Add files using upload-large-folder tool
Browse files- syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/_tabpfgen_generate.py +122 -0
- syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/gen_20260505_031455.log +3 -0
- syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/input_snapshot.json +3 -0
- syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/public_gate/normalized_schema_snapshot.json +3 -0
- syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/public_gate/public_gate_report.json +3 -0
- syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/public_gate/staged_input_manifest.json +3 -0
- syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/run_config.json +3 -0
- syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/runtime_result.json +3 -0
- syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/staged/public/staged_features.json +3 -0
- syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/staged/public/test.csv +3 -0
- syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/staged/public/train.csv +3 -0
- syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/staged/public/val.csv +3 -0
- syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/staged/tabpfgen/adapter_report.json +3 -0
- syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/staged/tabpfgen/adapter_transforms_applied.json +3 -0
- syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/staged/tabpfgen/model_input_manifest.json +3 -0
- syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/tabpfgen-n3-3918-20260505_031455.csv +3 -0
- syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/tabpfgen_meta.json +3 -0
- syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/train_20260505_031455.log +3 -0
syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/_tabpfgen_generate.py
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import os
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import numpy as np
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import pandas as pd
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import json
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from tabpfgen import TabPFGen
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df = pd.read_csv("/work/output-Benchmark-trainonly-v1/n3/tabpfgen/tabpfgen-n3-20260505_031455/staged/public/train.csv")
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target_col = "quality"
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target_missing = df[target_col].isna()
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if target_missing.any():
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dropped = int(target_missing.sum())
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df = df.loc[~target_missing].copy()
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print(
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f"[TabPFGen] Dropped {dropped} rows with missing target '{target_col}'"
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)
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if df.empty:
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raise ValueError(
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f"[TabPFGen] No rows remain after dropping missing target '{target_col}'"
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)
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feature_cols = [c for c in df.columns if c != target_col]
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cat_encodings = {}
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for col in feature_cols:
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if df[col].dtype == object or str(df[col].dtype) == 'category':
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cats = sorted(df[col].dropna().unique().tolist(), key=str)
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cat_map = {v: i for i, v in enumerate(cats)}
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df[col] = df[col].map(cat_map).astype(float)
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cat_encodings[col] = cats
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print(f"[TabPFGen] Label-encoded '{col}' ({len(cats)} categories)")
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target_cats = None
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if df[target_col].dtype == object or str(df[target_col].dtype) == 'category':
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cats = sorted(df[target_col].dropna().unique().tolist(), key=str)
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t_map = {v: i for i, v in enumerate(cats)}
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df[target_col] = df[target_col].map(t_map).astype(float)
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target_cats = cats
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print(f"[TabPFGen] Label-encoded target '{target_col}' ({len(cats)} categories)")
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X = df[feature_cols].values.astype(np.float32)
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y = df[target_col].values
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| 43 |
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fit_rows_cap = max(1, int(os.environ.get("TABPFGEN_FIT_MAX_ROWS", "50000")))
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if len(X) > fit_rows_cap:
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rng = np.random.default_rng(42)
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idx = np.sort(rng.choice(len(X), size=fit_rows_cap, replace=False))
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X = X[idx]
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y = y[idx]
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print(f"[TabPFGen] Downsampled fit rows -> {len(X)} (cap={fit_rows_cap})")
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target_n = int(3918)
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for i in range(X.shape[1]):
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col_vals = X[:, i]
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| 54 |
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mask = np.isnan(col_vals)
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if mask.any():
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mean_val = np.nanmean(col_vals)
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X[mask, i] = mean_val if not np.isnan(mean_val) else 0.0
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chunk_rows = max(1, int(os.environ.get("TABPFGEN_GEN_CHUNK_ROWS", "256")))
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device = (os.environ.get("TABPFGEN_DEVICE") or "auto").strip() or "auto"
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# TabPFGen v0.1.x API:仅支持 n_sgld_steps / sgld_* / device。
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# (旧版脚本中的 energy_*_chunk 与上游 TabPFGen 不一致,会导致 TypeError。)
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gen = TabPFGen(
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n_sgld_steps=1000,
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sgld_step_size=0.01,
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sgld_noise_scale=0.01,
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device=device,
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)
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print(f"[TabPFGen] Generating {target_n} rows via generate_classification (chunk_rows={chunk_rows}, device={device})")
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x_parts = []
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y_parts = []
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remaining = target_n
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| 75 |
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while remaining > 0:
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take = min(chunk_rows, remaining)
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X_part, y_part = gen.generate_classification(X, y, n_samples=take)
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x_parts.append(np.asarray(X_part))
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y_parts.append(np.asarray(y_part))
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remaining -= take
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print(f"[TabPFGen] chunk done: take={take}, remaining={remaining}")
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| 83 |
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X_syn = np.concatenate(x_parts, axis=0)
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y_syn = np.concatenate(y_parts, axis=0)
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syn_df = pd.DataFrame(X_syn, columns=feature_cols)
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syn_df[target_col] = y_syn
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| 88 |
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for col, cats in cat_encodings.items():
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codes = np.round(syn_df[col].values).astype(int)
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codes = np.clip(codes, 0, len(cats) - 1)
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syn_df[col] = [cats[c] for c in codes]
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| 94 |
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if target_cats is not None:
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codes = np.round(syn_df[target_col].values).astype(int)
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| 96 |
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codes = np.clip(codes, 0, len(target_cats) - 1)
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syn_df[target_col] = [target_cats[c] for c in codes]
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| 99 |
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if len(syn_df) > target_n:
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| 100 |
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print(f"[TabPFGen] Trimming rows: {len(syn_df)} -> {target_n}")
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syn_df = syn_df.iloc[:target_n].copy()
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elif len(syn_df) < target_n:
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deficit = target_n - len(syn_df)
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print(f"[TabPFGen] Padding rows: {len(syn_df)} -> {target_n} (deficit={deficit})")
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if len(syn_df) > 0:
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extra = syn_df.sample(n=deficit, replace=True, random_state=42)
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syn_df = pd.concat(
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| 108 |
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[syn_df.reset_index(drop=True), extra.reset_index(drop=True)],
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ignore_index=True,
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)
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else:
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syn_df = df[feature_cols + [target_col]].sample(
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| 113 |
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n=target_n, replace=True, random_state=42
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| 114 |
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).reset_index(drop=True)
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| 115 |
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| 116 |
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syn_df = syn_df[list(df.columns)]
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| 117 |
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if len(syn_df) != target_n:
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| 118 |
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raise RuntimeError(
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| 119 |
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f"[TabPFGen] Row alignment failed: got {len(syn_df)}, expected {target_n}"
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| 120 |
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)
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| 121 |
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syn_df.to_csv("/work/output-Benchmark-trainonly-v1/n3/tabpfgen/tabpfgen-n3-20260505_031455/tabpfgen-n3-3918-20260505_031455.csv", index=False)
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| 122 |
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print(f"[TabPFGen] Saved {len(syn_df)} rows -> /work/output-Benchmark-trainonly-v1/n3/tabpfgen/tabpfgen-n3-20260505_031455/tabpfgen-n3-3918-20260505_031455.csv")
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syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/gen_20260505_031455.log
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version https://git-lfs.github.com/spec/v1
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oid sha256:b59a6709891444a8c337dece738fa9daddd940e2aae7a77c2fbf69814c471f1f
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size 3671
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syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/input_snapshot.json
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version https://git-lfs.github.com/spec/v1
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oid sha256:b79a5fd7a2461408834df88eba8c103a1bb8680b2c1d0bbfd5b13aeb4cb9021a
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size 1347
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syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/public_gate/normalized_schema_snapshot.json
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version https://git-lfs.github.com/spec/v1
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oid sha256:f0d6ea2b78489a6f1d2a4546e12404214ae439c9439a9922bea713ec72b4b12a
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size 5698
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syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/public_gate/public_gate_report.json
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version https://git-lfs.github.com/spec/v1
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oid sha256:f0ef01a386dd32e531a00a2fe40df2aeed2cbeace8b0beab6956a3accd027a93
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size 914
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syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/public_gate/staged_input_manifest.json
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version https://git-lfs.github.com/spec/v1
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oid sha256:a95f5a20a9dc049314b5ccb13f5136712fbef7d22fd4ce66b48070ebec31d5d0
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size 6514
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syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/run_config.json
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version https://git-lfs.github.com/spec/v1
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oid sha256:1ab4d66c683740c738c6f723a1a047a9133608979ac5bd2d605557dca64589dc
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size 2089
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syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/runtime_result.json
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version https://git-lfs.github.com/spec/v1
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oid sha256:72a2cd20c43805e2e7522108c3ded5ca8d27fd00189c75895b94a36c9ed0538c
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size 887
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syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/staged/public/staged_features.json
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version https://git-lfs.github.com/spec/v1
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oid sha256:554e7aee4c0517bcf9d7810fc4a5563b6ed24d721bc267fee16aa28edd889143
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size 1179
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syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/staged/public/test.csv
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version https://git-lfs.github.com/spec/v1
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oid sha256:19e107152a94432e2a37ff045c00cfe35e1be30208b1553080d7dd0ede256d3b
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size 28944
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syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/staged/public/train.csv
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version https://git-lfs.github.com/spec/v1
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oid sha256:7813c8cca73ba4bfc6559215257b341c21e459980ad17ae6ddc809306bc9a0b9
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size 229945
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syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/staged/public/val.csv
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oid sha256:cf5979d9675567d9d6642640c9b84fc6c49e492604144723c30f50516c05cee6
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size 28791
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syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/staged/tabpfgen/adapter_report.json
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version https://git-lfs.github.com/spec/v1
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oid sha256:633e23289879e5ff941cfc41e763414d6e187a024dec8da8eda29f51825f59e8
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size 324
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syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/staged/tabpfgen/adapter_transforms_applied.json
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oid sha256:4f53cda18c2baa0c0354bb5f9a3ecbe5ed12ab4d8e11ba873c2f11161202b945
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size 2
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syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/staged/tabpfgen/model_input_manifest.json
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oid sha256:cccc0e7dd997f11f3e46aedae65ee5bc59b65e1412e66f5b6e521b9cf1a1e117
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size 6714
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syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/tabpfgen-n3-3918-20260505_031455.csv
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version https://git-lfs.github.com/spec/v1
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oid sha256:92c407ac2f14143fea48a2faf2e305bd2059284c72812aa25ae4d45a6223a19e
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size 446256
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syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/tabpfgen_meta.json
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version https://git-lfs.github.com/spec/v1
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| 3 |
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size 447
|
syntheticSuccess/n3/tabpfgen/tabpfgen-n3-20260505_031455/train_20260505_031455.log
ADDED
|
@@ -0,0 +1,3 @@
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|
|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:93ed99ac49745e2019fa06331263a9a9e4f30ad0ac4215247dcb64fcce94ab6e
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| 3 |
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size 595
|