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0000000000000000000000000000000000000000..2496d2118e354f2ac5346dd4d6a82891788794be --- /dev/null +++ b/SynthData0523/main/c3/tabddpm/tabddpm-c3-20260422_210001/staged/tabddpm/model_input_manifest.json @@ -0,0 +1,75 @@ +{ + "dataset_id": "c3", + "model": "tabddpm", + "target_column": "EI", + "task_type": "classification", + "column_schema": [ + { + "name": "EI", + "role": "target", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 3, + "unique_ratio": 0.001176, + "example_values": [ + "EI", + "IE", + "N" + ] + } + }, + { + "name": "ATRINS-DONOR-521", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2541, + "unique_ratio": 0.99608, + "example_values": [ + "HUMH19-DONOR-2562", + "HUMMHCD8A-ACCEPTOR-733", + "HUMGCB1-ACCEPTOR-6344", + "HUMNEBB-NEG-241", + "HUMATP1A2-NEG-2101" + ] + } + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2426, + "unique_ratio": 0.951, + "example_values": [ + "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG", + "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT", + "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT", + "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA", + "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA" + ] + } + } + ], + "public_manifest": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabddpm/tabddpm-c3-20260422_210001/public_gate/staged_input_manifest.json", + "train_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabddpm/tabddpm-c3-20260422_210001/staged/public/train.csv", + "val_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabddpm/tabddpm-c3-20260422_210001/staged/public/val.csv", + "test_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabddpm/tabddpm-c3-20260422_210001/staged/public/test.csv", + "features_json": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabddpm/tabddpm-c3-20260422_210001/staged/public/staged_features.json", + "public_gate_report": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabddpm/tabddpm-c3-20260422_210001/public_gate/public_gate_report.json" +} \ No newline at end of file diff --git a/SynthData0523/main/c3/tabddpm/tabddpm-c3-20260422_210001/tabddpm-c3-2551-20260422_210249.csv b/SynthData0523/main/c3/tabddpm/tabddpm-c3-20260422_210001/tabddpm-c3-2551-20260422_210249.csv new file mode 100644 index 0000000000000000000000000000000000000000..e62b29f28c92b573c389d118a8aa3f8599894226 --- /dev/null +++ b/SynthData0523/main/c3/tabddpm/tabddpm-c3-20260422_210001/tabddpm-c3-2551-20260422_210249.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ff0a188233ca47cf2e2759b2f4fe4ff3ab23b357655db0e0965c2c85603e7883 +size 26811 diff --git a/SynthData0523/main/c3/tabddpm/tabddpm-c3-20260422_210001/train_20260422_210001.log b/SynthData0523/main/c3/tabddpm/tabddpm-c3-20260422_210001/train_20260422_210001.log new file mode 100644 index 0000000000000000000000000000000000000000..f8dd6dbaeaad9eda0f046c11331ccad842cdf7ad --- /dev/null +++ b/SynthData0523/main/c3/tabddpm/tabddpm-c3-20260422_210001/train_20260422_210001.log @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:82dec013f0b1d072a50d437fd31928a6a7907aea2e100eb9043d35667cb77047 +size 747 diff --git a/SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/_tabdiff_gen.py b/SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/_tabdiff_gen.py new file mode 100644 index 0000000000000000000000000000000000000000..eb6c6fb06a7fa15c7bf573d72e3f8fad721da4ef --- /dev/null +++ b/SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/_tabdiff_gen.py @@ -0,0 +1,36 @@ + +import os, shutil, subprocess, sys +td = r"/workspace/TabDiff" +name = r"pipeline_ds" +src = r"/work/output-SpecializedModels/c3/tabdiff/tabdiff-c3-20260420_051046/tabular_bundle/pipeline_ds" +dst_data = os.path.join(td, "data", name) +dst_syn = os.path.join(td, "synthetic", name) +shutil.rmtree(dst_data, ignore_errors=True) +shutil.copytree(src, dst_data) +os.makedirs(dst_syn, exist_ok=True) +for fn in ("real.csv", "test.csv", "val.csv"): + shutil.copy(os.path.join(src, fn), os.path.join(dst_syn, fn)) +os.chdir(td) +os.environ["PYTHONPATH"] = td + os.pathsep + os.environ.get("PYTHONPATH", "") +subprocess.check_call([ + sys.executable, "-m", "tabdiff.main", + "--dataname", name, "--mode", "test", "--gpu", "0", + "--no_wandb", "--exp_name", r"adapter_learnable", + "--ckpt_path", r"/workspace/TabDiff/tabdiff/ckpt/pipeline_ds/adapter_learnable/model_500.pt", + "--num_samples_to_generate", str(int(2551)), +]) +# test() 写入 tabdiff/result////samples.csv +import glob as g +base = os.path.join(td, "tabdiff", "result", name, r"adapter_learnable") +best = None +best_t = -1.0 +for root, _, files in os.walk(base): + if "samples.csv" in files: + p = os.path.join(root, "samples.csv") + t = os.path.getmtime(p) + if t > best_t: + best_t = t + best = p +if not best: + raise SystemExit("tabdiff: no samples.csv under " + base) +shutil.copy(best, r"/work/output-SpecializedModels/c3/tabdiff/tabdiff-c3-20260420_051046/tabdiff-c3-2551-20260420_051812.csv") diff --git a/SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/_tabdiff_train.py b/SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/_tabdiff_train.py new file mode 100644 index 0000000000000000000000000000000000000000..e608fdea30b76ca5914ac6c5c47e2663f0a1cb19 --- /dev/null +++ b/SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/_tabdiff_train.py @@ -0,0 +1,21 @@ + +import os, shutil, subprocess, sys +td = r"/workspace/TabDiff" +name = r"pipeline_ds" +src = r"/work/output-SpecializedModels/c3/tabdiff/tabdiff-c3-20260420_051046/tabular_bundle/pipeline_ds" +dst_data = os.path.join(td, "data", name) +dst_syn = os.path.join(td, "synthetic", name) +shutil.rmtree(dst_data, ignore_errors=True) +shutil.copytree(src, dst_data) +os.makedirs(dst_syn, exist_ok=True) +for fn in ("real.csv", "test.csv", "val.csv"): + shutil.copy(os.path.join(src, fn), os.path.join(dst_syn, fn)) +os.chdir(td) +os.environ["PYTHONPATH"] = td + os.pathsep + os.environ.get("PYTHONPATH", "") +os.environ["TABDIFF_SMOKE_STEPS"] = "500" +os.environ["TABDIFF_ADAPTER_TRAIN"] = "1" +subprocess.check_call([ + sys.executable, "-m", "tabdiff.main", + "--dataname", name, "--mode", "train", "--gpu", "0", + "--no_wandb", "--exp_name", r"adapter_learnable", +]) diff --git a/SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/input_snapshot.json b/SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/input_snapshot.json new file mode 100644 index 0000000000000000000000000000000000000000..26eb8dd78dd74388327d8d9b96babf8acc1ef007 --- /dev/null +++ b/SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/input_snapshot.json @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:773c569fcc7bda1cb02c291c9efc4b5a53feff13826ca08e7c81b12bb489c62c +size 1346 diff --git a/SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/models_tabdiff/trained.pt b/SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/models_tabdiff/trained.pt new file mode 100644 index 0000000000000000000000000000000000000000..bc319a55a9c7152a1137f968b6fa1c735125ad11 --- /dev/null +++ b/SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/models_tabdiff/trained.pt @@ -0,0 +1,3 @@ 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b/SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/train_20260420_051046.log @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e9b6610f8985a22cce7fb82ccdeabf406381e1b823a088057b5fa10886315b49 +size 293660 diff --git a/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/_tabpfgen_generate.py b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/_tabpfgen_generate.py new file mode 100644 index 0000000000000000000000000000000000000000..67b789d6d555793d669b0fec0e4fdac92c14a13d --- /dev/null +++ b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/_tabpfgen_generate.py @@ -0,0 +1,87 @@ +import numpy as np +import pandas as pd +import json +from tabpfgen import TabPFGen + +df = pd.read_csv("/work/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/train.csv") +target_col = "EI" + +feature_cols = [c for c in df.columns if c != target_col] + +# --- Label-encode categorical / object columns --- +cat_encodings = {} # col -> list of unique values (index = code) +for col in feature_cols: + if df[col].dtype == object or str(df[col].dtype) == 'category': + cats = sorted(df[col].dropna().unique().tolist(), key=str) + cat_map = {v: i for i, v in enumerate(cats)} + df[col] = df[col].map(cat_map).astype(float) + cat_encodings[col] = cats + print(f"[TabPFGen] Label-encoded '{col}' ({len(cats)} categories)") + +# Encode target if categorical +target_cats = None +if df[target_col].dtype == object or str(df[target_col].dtype) == 'category': + cats = sorted(df[target_col].dropna().unique().tolist(), key=str) + t_map = {v: i for i, v in enumerate(cats)} + df[target_col] = df[target_col].map(t_map).astype(float) + target_cats = cats + print(f"[TabPFGen] Label-encoded target '{target_col}' ({len(cats)} categories)") + +X = df[feature_cols].values.astype(np.float32) +y = df[target_col].values +target_n = int(2551) + +# Handle NaN +for i in range(X.shape[1]): + col_vals = X[:, i] + mask = np.isnan(col_vals) + if mask.any(): + mean_val = np.nanmean(col_vals) + X[mask, i] = mean_val if not np.isnan(mean_val) else 0.0 + +gen = TabPFGen( + n_sgld_steps=1000, + sgld_step_size=0.01, + sgld_noise_scale=0.01, + device="auto", +) + +print(f"[TabPFGen] Generating {target_n} rows via generate_classification") +X_syn, y_syn = gen.generate_classification(X, y, n_samples=target_n) + +syn_df = pd.DataFrame(X_syn, columns=feature_cols) +syn_df[target_col] = y_syn + +# --- Inverse label-encoding for categorical columns --- +for col, cats in cat_encodings.items(): + # Round to nearest integer index, clamp to valid range + codes = np.round(syn_df[col].values).astype(int) + codes = np.clip(codes, 0, len(cats) - 1) + syn_df[col] = [cats[c] for c in codes] + +if target_cats is not None: + codes = np.round(syn_df[target_col].values).astype(int) + codes = np.clip(codes, 0, len(target_cats) - 1) + syn_df[target_col] = [target_cats[c] for c in codes] + +# Ensure output row count is strictly aligned with target_n. +if len(syn_df) > target_n: + print(f"[TabPFGen] Trimming rows: {len(syn_df)} -> {target_n}") + syn_df = syn_df.iloc[:target_n].copy() +elif len(syn_df) < target_n: + deficit = target_n - len(syn_df) + print(f"[TabPFGen] Padding rows: {len(syn_df)} -> {target_n} (deficit={deficit})") + if len(syn_df) > 0: + extra = syn_df.sample(n=deficit, replace=True, random_state=42) + syn_df = pd.concat([syn_df.reset_index(drop=True), extra.reset_index(drop=True)], ignore_index=True) + else: + # Defensive fallback: if generator returns empty, bootstrap from training rows. + syn_df = df[feature_cols + [target_col]].sample( + n=target_n, replace=True, random_state=42 + ).reset_index(drop=True) + +syn_df = syn_df[list(df.columns)] +if len(syn_df) != target_n: + raise RuntimeError(f"[TabPFGen] Row alignment failed: got {len(syn_df)}, expected {target_n}") +syn_df.to_csv("/work/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/tabpfgen-c3-2551-20260422_200030.csv", index=False) +print(f"[TabPFGen] Saved {len(syn_df)} rows -> /work/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/tabpfgen-c3-2551-20260422_200030.csv")