diff --git a/.gitattributes b/.gitattributes index ff2481b6e7042be83c97293882d6d055d46c6ba2..b2508c57862538fdb1a1001644e862dd19db2ed3 100644 --- a/.gitattributes +++ b/.gitattributes @@ -4272,3 +4272,28 @@ SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/tabular_bundle/pipeline SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/tabular_bundle/pipeline_ds/y_train.npy filter=lfs diff=lfs merge=lfs -text SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/tabular_bundle/pipeline_ds/y_val.npy filter=lfs diff=lfs merge=lfs -text SynthData0523/main/c3/tabdiff/tabdiff-c3-20260420_051046/train_20260420_051046.log filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/gen_20260422_200030.log filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/test.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/train.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/val.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/tabpfgen-c3-2551-20260422_200030.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/train_20260422_200030.log filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_cat_test.npy filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_cat_train.npy filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_num_test.npy filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_num_train.npy filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/test.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/train.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/y_test.npy filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/y_train.npy filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/gen_20260421_004207.log filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/test.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/train.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/val.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/synthetic/tabsyn_c3/real.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/synthetic/tabsyn_c3/test.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/tabsyn-c3-2551-20260421_004207.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/train_20260420_233446.log filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/gen_20260322_205517.log filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/gen_20260330_065244.log filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/models_300epochs/train_20260322_205426.log filter=lfs diff=lfs merge=lfs -text diff --git a/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/gen_20260422_200030.log b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/gen_20260422_200030.log new file mode 100644 index 0000000000000000000000000000000000000000..89ec6b81879fbd0b952fdd3cde1be34b2bb7a790 --- /dev/null +++ b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/gen_20260422_200030.log @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d48e20d8b271d25eb7aa45cba2528e6856073932b346d2c0952eb98be295f86b +size 756 diff --git a/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/input_snapshot.json b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/input_snapshot.json new file mode 100644 index 0000000000000000000000000000000000000000..b8b8213d18cf16009fb3be15bb09901845312b4c --- /dev/null +++ b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/input_snapshot.json @@ -0,0 +1,36 @@ +{ + "dataset_id": "c3", + "model": "tabpfgen", + "inputs": { + "train_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-train.csv", + "exists": true, + "size": 213326, + "sha256": "a1ee97b37e9abc68953c8bb4c99a5f8535c68b121c60de73d3e23fd4beb516f3" + }, + "val_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-val.csv", + "exists": true, + "size": 26805, + "sha256": "5f384eded9999ef705f6b10ae0d20ce981a1b92339d451e7feb3946e95fdcbd9" + }, + "test_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-test.csv", + "exists": true, + "size": 26871, + "sha256": "3f0c932764d3321b9bc1ae15932af108b80382f4c89248839c02f48e1d08ffad" + }, + "profile_json": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c3/c3-dataset_profile.json", + "exists": true, + "size": 2635, + "sha256": "dfb01e28765bec4ac04cdb273987b23581194b35638d6450dac66f4525614335" + }, + "contract_json": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c3/c3-dataset_contract_v1.json", + "exists": true, + "size": 2422, + "sha256": "a408b4f800a67fc20e9bc37e847c54de7ed6f608b93d440c3933dead213acfca" + } + } +} \ No newline at end of file diff --git a/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/normalized_schema_snapshot.json b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/normalized_schema_snapshot.json new file mode 100644 index 0000000000000000000000000000000000000000..0922a1b5c96b82e247c8d185110e0243aae9da16 --- /dev/null +++ b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/normalized_schema_snapshot.json @@ -0,0 +1,68 @@ +{ + "dataset_id": "c3", + "target_column": "EI", + "task_type": "classification", + "columns": [ + { + "name": "EI", + "role": "target", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 3, + "unique_ratio": 0.001176, + "example_values": [ + "EI", + "IE", + "N" + ] + } + }, + { + "name": "ATRINS-DONOR-521", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2541, + "unique_ratio": 0.99608, + "example_values": [ + "HUMH19-DONOR-2562", + "HUMMHCD8A-ACCEPTOR-733", + "HUMGCB1-ACCEPTOR-6344", + "HUMNEBB-NEG-241", + "HUMATP1A2-NEG-2101" + ] + } + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2426, + "unique_ratio": 0.951, + "example_values": [ + "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG", + "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT", + "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT", + "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA", + "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA" + ] + } + } + ] +} \ No newline at end of file diff --git a/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/public_gate_report.json b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/public_gate_report.json new file mode 100644 index 0000000000000000000000000000000000000000..587dc038d3d62e7428a64b5f92748c4509768e0f --- /dev/null +++ b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/public_gate_report.json @@ -0,0 +1,37 @@ +{ + "dataset_id": "c3", + "status": "pass", + "checks": [ + { + "check_id": "PG001_csv_parse_ok", + "status": "pass" + }, + { + "check_id": "PG002_split_header_consistent", + "status": "pass" + }, + { + "check_id": "PG003_profile_header_match", + "status": "pass" + }, + { + "check_id": "PG004_missing_token_normalized", + "status": "pass" + }, + { + "check_id": "PG005_semantic_type_validated", + "status": "pass" + }, + { + "check_id": "PG006_target_defined_and_valid", + "status": "pass" + } + ], + "target_column": "EI", + "task_type": "classification", + "input_splits": { + "train": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-train.csv", + "val": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-val.csv", + "test": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-test.csv" + } +} \ No newline at end of file diff --git a/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/staged_input_manifest.json b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/staged_input_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..5382b1022da2a6ee5889f8b36424333cc3bbbea5 --- /dev/null +++ b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/staged_input_manifest.json @@ -0,0 +1,73 @@ +{ + "dataset_id": "c3", + "target_column": "EI", + "task_type": "classification", + "train_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/train.csv", + "val_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/val.csv", + "test_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/test.csv", + "features_json": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/staged_features.json", + "public_gate_report": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/public_gate_report.json", + "column_schema": [ + { + "name": "EI", + "role": "target", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 3, + "unique_ratio": 0.001176, + "example_values": [ + "EI", + "IE", + "N" + ] + } + }, + { + "name": "ATRINS-DONOR-521", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2541, + "unique_ratio": 0.99608, + "example_values": [ + "HUMH19-DONOR-2562", + "HUMMHCD8A-ACCEPTOR-733", + "HUMGCB1-ACCEPTOR-6344", + "HUMNEBB-NEG-241", + "HUMATP1A2-NEG-2101" + ] + } + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2426, + "unique_ratio": 0.951, + "example_values": [ + "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG", + "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT", + "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT", + "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA", + "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA" + ] + } + } + ] +} \ No newline at end of file diff --git a/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/runtime_result.json b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/runtime_result.json new file mode 100644 index 0000000000000000000000000000000000000000..090ff918e423b96186374ad49ca63dbedbc06275 --- /dev/null +++ b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/runtime_result.json @@ -0,0 +1,15 @@ +{ + "dataset_id": "c3", + "model": "tabpfgen", + "run_id": "tabpfgen-c3-20260422_200030", + "public_gate_status": "pass", + "adapter_ready_status": "pass", + "train_status": "success", + "generate_status": "success", + "reason_code": null, + "reason_detail": null, + "artifacts": { + "synthetic_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/tabpfgen-c3-2551-20260422_200030.csv", + "model_path": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030" + } +} \ No newline at end of file diff --git a/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/staged_features.json b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/staged_features.json new file mode 100644 index 0000000000000000000000000000000000000000..657b01b6821a9e4997cc1065875671114d6defd0 --- /dev/null +++ b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/staged_features.json @@ -0,0 +1,17 @@ +[ + { + "feature_name": "EI", + "data_type": "categorical", + "is_target": true + }, + { + "feature_name": "ATRINS-DONOR-521", + "data_type": "ID", + "is_target": false + }, + { + "feature_name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "data_type": "ID", + "is_target": false + } +] \ No newline at end of file diff --git a/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/test.csv b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/test.csv new file mode 100644 index 0000000000000000000000000000000000000000..4d2e8892996799a3e69ee94e725d635fe92ca849 --- /dev/null +++ b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/test.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:be0c5bad6c59669b0f6ea2a0c953d0bb03ce62ce625357b1b136eabc2de34d99 +size 26550 diff --git a/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/train.csv b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/train.csv new file mode 100644 index 0000000000000000000000000000000000000000..158c54c0861baa492a6d65351885710b096aacfe --- /dev/null +++ b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/train.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f4b86543124166673bed177c1bb1e1806d04bbc8aaaa2c545b57c7b538aad82c +size 210774 diff --git a/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/val.csv b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/val.csv new file mode 100644 index 0000000000000000000000000000000000000000..d9782ae547f984fd116294f15c027bd9df761099 --- /dev/null +++ b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/val.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:db595b372b40df454d8ad8152b81c613321b79f80033c020da635825581237ea +size 26486 diff --git a/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/tabpfgen/adapter_report.json b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/tabpfgen/adapter_report.json new file mode 100644 index 0000000000000000000000000000000000000000..0c8b08b7b21c9f9f2b832601d57a4bcafc50576a --- /dev/null +++ b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/tabpfgen/adapter_report.json @@ -0,0 +1,7 @@ +{ + "adapter_ready_status": "pass", + "adapter_fail_reason_code": null, + "adapter_fail_detail": null, + "adapter_transforms_applied": [], + "model_input_manifest": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/tabpfgen/model_input_manifest.json" +} \ No newline at end of file diff --git a/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/tabpfgen/adapter_transforms_applied.json b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/tabpfgen/adapter_transforms_applied.json new file mode 100644 index 0000000000000000000000000000000000000000..0637a088a01e8ddab3bf3fa98dbe804cbde1a0dc --- /dev/null +++ b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/tabpfgen/adapter_transforms_applied.json @@ -0,0 +1 @@ +[] \ No newline at end of file diff --git a/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/tabpfgen/model_input_manifest.json b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/tabpfgen/model_input_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..f9345c20b3ea7e1fe57d0f34e174b2b81cbc7254 --- /dev/null +++ b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/tabpfgen/model_input_manifest.json @@ -0,0 +1,75 @@ +{ + "dataset_id": "c3", + "model": "tabpfgen", + "target_column": "EI", + "task_type": "classification", + "column_schema": [ + { + "name": "EI", + "role": "target", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 3, + "unique_ratio": 0.001176, + "example_values": [ + "EI", + "IE", + "N" + ] + } + }, + { + "name": "ATRINS-DONOR-521", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2541, + "unique_ratio": 0.99608, + "example_values": [ + "HUMH19-DONOR-2562", + "HUMMHCD8A-ACCEPTOR-733", + "HUMGCB1-ACCEPTOR-6344", + "HUMNEBB-NEG-241", + "HUMATP1A2-NEG-2101" + ] + } + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2426, + "unique_ratio": 0.951, + "example_values": [ + "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG", + "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT", + "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT", + "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA", + "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA" + ] + } + } + ], + "public_manifest": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/staged_input_manifest.json", + "train_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/train.csv", + "val_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/val.csv", + "test_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/test.csv", + "features_json": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/staged_features.json", + "public_gate_report": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/public_gate/public_gate_report.json" +} \ No newline at end of file diff --git a/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/tabpfgen-c3-2551-20260422_200030.csv b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/tabpfgen-c3-2551-20260422_200030.csv new file mode 100644 index 0000000000000000000000000000000000000000..045609b2d5e21211361ec6ca9628b31511632d7e --- /dev/null +++ b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/tabpfgen-c3-2551-20260422_200030.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8a10c44893160ff1b2d7e4d5be10705df520ccbfd98f7b909c073009268a48ff +size 210353 diff --git a/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/tabpfgen_meta.json b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/tabpfgen_meta.json new file mode 100644 index 0000000000000000000000000000000000000000..f034bb3fb331e82e4f769696b7169504ab7b66fb --- /dev/null +++ b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/tabpfgen_meta.json @@ -0,0 +1,8 @@ +{ + "csv_path": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/train.csv", + "json_path": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabpfgen/tabpfgen-c3-20260422_200030/staged/public/staged_features.json", + "target_col": "EI", + "is_classification": true, + "n_rows": 2551, + "n_cols": 3 +} \ No newline at end of file diff --git a/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/train_20260422_200030.log b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/train_20260422_200030.log new file mode 100644 index 0000000000000000000000000000000000000000..ef0a288dbaec5580a0d3f8101fc0e5fb62803bad --- /dev/null +++ b/SynthData0523/main/c3/tabpfgen/tabpfgen-c3-20260422_200030/train_20260422_200030.log @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fb6be65831df75149e19ff03a87b88bb4acc9cc1fec02de1888fd8bf8749c84a +size 186 diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/_tabsyn_sample.py b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/_tabsyn_sample.py new file mode 100644 index 0000000000000000000000000000000000000000..8fc0fb0f74799308e436b3569bf139474a01f580 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/_tabsyn_sample.py @@ -0,0 +1,39 @@ +import os, sys, subprocess + +work_dir = "/work/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446" +dataname = "tabsyn_c3" +output_csv = "/work/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/tabsyn-c3-2551-20260421_004207.csv" +tabsyn_root = "/workspace/tabsyn" + +assert os.path.exists(tabsyn_root), f"TabSyn source not mounted: {tabsyn_root}" + +old = os.environ.get("PYTHONPATH", "") +os.environ["PYTHONPATH"] = tabsyn_root + (os.pathsep + old if old else "") +sys.path.insert(0, tabsyn_root) + +os.chdir(tabsyn_root) + +# Ensure data symlink exists +data_link = os.path.join(tabsyn_root, "data", dataname) +data_src = os.path.join(work_dir, "data", dataname) +os.makedirs(os.path.join(tabsyn_root, "data"), exist_ok=True) +if os.path.exists(data_link): + os.remove(data_link) +os.symlink(data_src, data_link) + +print(f"[TabSyn] Sampling 2551 rows") +env = os.environ.copy() +env.setdefault("TABSYN_RESUME", "1") +ret = subprocess.run( + [sys.executable, "main.py", + "--dataname", dataname, + "--mode", "sample", + "--method", "tabsyn", + "--gpu", "0", + "--save_path", output_csv], + cwd=tabsyn_root, + env=env +) +if ret.returncode != 0: + sys.exit(ret.returncode) +print(f"[TabSyn] Saved -> {output_csv}") diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/_tabsyn_train.py b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/_tabsyn_train.py new file mode 100644 index 0000000000000000000000000000000000000000..c5c956ad06207a13cffb707b0feaf6f0e13e7939 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/_tabsyn_train.py @@ -0,0 +1,62 @@ +import os, sys, subprocess + +work_dir = "/work/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446" +dataname = "tabsyn_c3" +tabsyn_root = "/workspace/tabsyn" + +assert os.path.exists(tabsyn_root), f"TabSyn source not mounted: {tabsyn_root}" + +old = os.environ.get("PYTHONPATH", "") +os.environ["PYTHONPATH"] = tabsyn_root + (os.pathsep + old if old else "") +sys.path.insert(0, tabsyn_root) + +os.chdir(tabsyn_root) + +# Symlink data dir into TabSyn data/ +data_link = os.path.join(tabsyn_root, "data", dataname) +data_src = os.path.join(work_dir, "data", dataname) +os.makedirs(os.path.join(tabsyn_root, "data"), exist_ok=True) +if os.path.exists(data_link): + os.remove(data_link) +os.symlink(data_src, data_link) + +env = os.environ.copy() +env.setdefault("TABSYN_RESUME", "1") +_te = None +if _te is not None: + env["TABSYN_VAE_EPOCHS"] = str(_te) + env["TABSYN_DIFFUSION_MAX_EPOCHS"] = str(max(_te + 1, 2)) + +# Data preprocessing is done on the host side (_prepare_data_dir) +# which creates .npy files, train/test CSVs, and info.json + +# Step 1: Train VAE (produces latent embeddings) +print(f"[TabSyn] Step 1/2: Training VAE in {tabsyn_root}, dataname={dataname}") +ret = subprocess.run( + [sys.executable, "main.py", + "--dataname", dataname, + "--mode", "train", + "--method", "vae", + "--gpu", "0"], + cwd=tabsyn_root, + env=env +) +if ret.returncode != 0: + print("[TabSyn] VAE training failed") + sys.exit(ret.returncode) + +# Step 2: Train diffusion model on latent space +print(f"[TabSyn] Step 2/2: Training diffusion model") +ret = subprocess.run( + [sys.executable, "main.py", + "--dataname", dataname, + "--mode", "train", + "--method", "tabsyn", + "--gpu", "0"], + cwd=tabsyn_root, + env=env +) +if ret.returncode != 0: + print("[TabSyn] Diffusion training failed") + sys.exit(ret.returncode) +print("[TabSyn] Training complete (VAE + Diffusion)") diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_cat_test.npy b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_cat_test.npy new file mode 100644 index 0000000000000000000000000000000000000000..57490268f9d6e191d9f1d5c5c76fbc08f25b8dad --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_cat_test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fcceec7eda6e86ff9799b933ebfaaa423aca45ad851421202b7942e900a6bb75 +size 2688 diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_cat_train.npy b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_cat_train.npy new file mode 100644 index 0000000000000000000000000000000000000000..3660809bbf57a9a38b3a4d8da6d83e2cdcd5bad5 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_cat_train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b85c1a776dc70914445c558fd168d71dee05235e7a0f217023d0b77be66bcd62 +size 23080 diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_num_test.npy b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_num_test.npy new file mode 100644 index 0000000000000000000000000000000000000000..48b8a88ecab2d98484d9b814d4830cb0383ea1aa --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_num_test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0e76d28bbabe00cb78a9b8a121088f0fd5d74935716d02c3f83ee37d63f3dba6 +size 1408 diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_num_train.npy b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_num_train.npy new file mode 100644 index 0000000000000000000000000000000000000000..0ed685c583d78a90e773dbb6c4b5a8216e599582 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/X_num_train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ee8bfbf882599c36f3320ced30aa9db82a354d2c6ca43ce4b6112f2771e90704 +size 11604 diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/info.json b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/info.json new file mode 100644 index 0000000000000000000000000000000000000000..48795e5ec1690385a556e5f431093424fa3416a0 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/info.json @@ -0,0 +1,57 @@ +{ + "name": "tabsyn_c3", + "task_type": "multiclass", + "n_num_features": 1, + "n_cat_features": 1, + "train_size": 2869, + "num_col_idx": [ + 1 + ], + "cat_col_idx": [ + 2 + ], + "target_col_idx": [ + 0 + ], + "column_names": [ + "EI", + "ATRINS-DONOR-521", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG" + ], + "train_num": 2869, + "test_num": 320, + "header": 0, + "file_type": "csv", + "data_path": "data/tabsyn_c3/train.csv", + "test_path": null, + "idx_mapping": { + "0": 2, + "1": 0, + "2": 1 + }, + "inverse_idx_mapping": { + "2": 0, + "0": 1, + "1": 2 + }, + "idx_name_mapping": { + "0": "EI", + "1": "ATRINS-DONOR-521", + "2": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG" + }, + "n_classes": 3, + "metadata": { + "columns": { + "1": { + "sdtype": "numerical", + "computer_representation": "Float" + }, + "2": { + "sdtype": "categorical" + }, + "0": { + "sdtype": "categorical" + } + } + } +} \ No newline at end of file diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/test.csv b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/test.csv new file mode 100644 index 0000000000000000000000000000000000000000..568c3a41fdc10c9cd93a2cbff6695bb13b1c94b0 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/test.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9e7236117a72795aa9a0bae6cac4f022ecdd249168315f9a2f989f668bc35b4a +size 2084 diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/train.csv b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/train.csv new file mode 100644 index 0000000000000000000000000000000000000000..2c829ae3517303e73430aec4d48b53660746d179 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/train.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8318611a30eea3817eab5e2a68bc0c6b4dad8b9ff813c663c4432a9cefcfc014 +size 32169 diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/y_test.npy b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/y_test.npy new file mode 100644 index 0000000000000000000000000000000000000000..245c1c37958e28263a591a3c5a8bc9f2e29d354e --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/y_test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0cd650637cdf97db773850db1e519c5d9b4f8c2d32ea31eab717b94cdc1229a4 +size 2688 diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/y_train.npy b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/y_train.npy new file mode 100644 index 0000000000000000000000000000000000000000..58f77be0d0bd537698e6d1d272e5cce3ab9f0e85 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/data/tabsyn_c3/y_train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:81f8cc42b7ff5049f57014356392f8a4819d64c437bfd9f8daa073cf982522f0 +size 23080 diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/gen_20260421_004207.log b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/gen_20260421_004207.log new file mode 100644 index 0000000000000000000000000000000000000000..cb4c62427356d65a39d96a6dd68135c624133419 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/gen_20260421_004207.log @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2eedc1eb9edf4fc9e786bd053470588a42ef62aba5f4ef0bc0dfc8a80e2ed7fe +size 665 diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/input_snapshot.json b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/input_snapshot.json new file mode 100644 index 0000000000000000000000000000000000000000..6517b0e40e9307fbbbc071d753027de7ea71c45d --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/input_snapshot.json @@ -0,0 +1,36 @@ +{ + "dataset_id": "c3", + "model": "tabsyn", + "inputs": { + "train_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-train.csv", + "exists": true, + "size": 213326, + "sha256": "a1ee97b37e9abc68953c8bb4c99a5f8535c68b121c60de73d3e23fd4beb516f3" + }, + "val_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-val.csv", + "exists": true, + "size": 26805, + "sha256": "5f384eded9999ef705f6b10ae0d20ce981a1b92339d451e7feb3946e95fdcbd9" + }, + "test_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-test.csv", + "exists": true, + "size": 26871, + "sha256": "3f0c932764d3321b9bc1ae15932af108b80382f4c89248839c02f48e1d08ffad" + }, + "profile_json": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c3/c3-dataset_profile.json", + "exists": true, + "size": 2635, + "sha256": "dfb01e28765bec4ac04cdb273987b23581194b35638d6450dac66f4525614335" + }, + "contract_json": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c3/c3-dataset_contract_v1.json", + "exists": true, + "size": 2422, + "sha256": "a408b4f800a67fc20e9bc37e847c54de7ed6f608b93d440c3933dead213acfca" + } + } +} \ No newline at end of file diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/normalized_schema_snapshot.json b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/normalized_schema_snapshot.json new file mode 100644 index 0000000000000000000000000000000000000000..0922a1b5c96b82e247c8d185110e0243aae9da16 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/normalized_schema_snapshot.json @@ -0,0 +1,68 @@ +{ + "dataset_id": "c3", + "target_column": "EI", + "task_type": "classification", + "columns": [ + { + "name": "EI", + "role": "target", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 3, + "unique_ratio": 0.001176, + "example_values": [ + "EI", + "IE", + "N" + ] + } + }, + { + "name": "ATRINS-DONOR-521", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2541, + "unique_ratio": 0.99608, + "example_values": [ + "HUMH19-DONOR-2562", + "HUMMHCD8A-ACCEPTOR-733", + "HUMGCB1-ACCEPTOR-6344", + "HUMNEBB-NEG-241", + "HUMATP1A2-NEG-2101" + ] + } + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2426, + "unique_ratio": 0.951, + "example_values": [ + "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG", + "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT", + "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT", + "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA", + "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA" + ] + } + } + ] +} \ No newline at end of file diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/public_gate_report.json b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/public_gate_report.json new file mode 100644 index 0000000000000000000000000000000000000000..587dc038d3d62e7428a64b5f92748c4509768e0f --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/public_gate_report.json @@ -0,0 +1,37 @@ +{ + "dataset_id": "c3", + "status": "pass", + "checks": [ + { + "check_id": "PG001_csv_parse_ok", + "status": "pass" + }, + { + "check_id": "PG002_split_header_consistent", + "status": "pass" + }, + { + "check_id": "PG003_profile_header_match", + "status": "pass" + }, + { + "check_id": "PG004_missing_token_normalized", + "status": "pass" + }, + { + "check_id": "PG005_semantic_type_validated", + "status": "pass" + }, + { + "check_id": "PG006_target_defined_and_valid", + "status": "pass" + } + ], + "target_column": "EI", + "task_type": "classification", + "input_splits": { + "train": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-train.csv", + "val": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-val.csv", + "test": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-test.csv" + } +} \ No newline at end of file diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/staged_input_manifest.json b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/staged_input_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..e906a18e4353d0b2bfc718c38216b1c40af049c7 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/staged_input_manifest.json @@ -0,0 +1,73 @@ +{ + "dataset_id": "c3", + "target_column": "EI", + "task_type": "classification", + "train_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/train.csv", + "val_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/val.csv", + "test_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/test.csv", + "features_json": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/staged_features.json", + "public_gate_report": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/public_gate_report.json", + "column_schema": [ + { + "name": "EI", + "role": "target", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 3, + "unique_ratio": 0.001176, + "example_values": [ + "EI", + "IE", + "N" + ] + } + }, + { + "name": "ATRINS-DONOR-521", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2541, + "unique_ratio": 0.99608, + "example_values": [ + "HUMH19-DONOR-2562", + "HUMMHCD8A-ACCEPTOR-733", + "HUMGCB1-ACCEPTOR-6344", + "HUMNEBB-NEG-241", + "HUMATP1A2-NEG-2101" + ] + } + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2426, + "unique_ratio": 0.951, + "example_values": [ + "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG", + "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT", + "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT", + "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA", + "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA" + ] + } + } + ] +} \ No newline at end of file diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/runtime_result.json b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/runtime_result.json new file mode 100644 index 0000000000000000000000000000000000000000..517634f89c6a286e56f18876c3648e31467ba790 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/runtime_result.json @@ -0,0 +1,15 @@ +{ + "dataset_id": "c3", + "model": "tabsyn", + "run_id": "tabsyn-c3-20260420_233446", + "public_gate_status": "pass", + "adapter_ready_status": "pass", + "train_status": "success", + "generate_status": "success", + "reason_code": null, + "reason_detail": null, + "artifacts": { + "synthetic_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/tabsyn-c3-2551-20260421_004207.csv", + "model_path": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446" + } +} \ No newline at end of file diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/staged_features.json b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/staged_features.json new file mode 100644 index 0000000000000000000000000000000000000000..657b01b6821a9e4997cc1065875671114d6defd0 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/staged_features.json @@ -0,0 +1,17 @@ +[ + { + "feature_name": "EI", + "data_type": "categorical", + "is_target": true + }, + { + "feature_name": "ATRINS-DONOR-521", + "data_type": "ID", + "is_target": false + }, + { + "feature_name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "data_type": "ID", + "is_target": false + } +] \ No newline at end of file diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/test.csv b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/test.csv new file mode 100644 index 0000000000000000000000000000000000000000..4d2e8892996799a3e69ee94e725d635fe92ca849 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/test.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:be0c5bad6c59669b0f6ea2a0c953d0bb03ce62ce625357b1b136eabc2de34d99 +size 26550 diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/train.csv b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/train.csv new file mode 100644 index 0000000000000000000000000000000000000000..158c54c0861baa492a6d65351885710b096aacfe --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/train.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f4b86543124166673bed177c1bb1e1806d04bbc8aaaa2c545b57c7b538aad82c +size 210774 diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/val.csv b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/val.csv new file mode 100644 index 0000000000000000000000000000000000000000..d9782ae547f984fd116294f15c027bd9df761099 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/val.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:db595b372b40df454d8ad8152b81c613321b79f80033c020da635825581237ea +size 26486 diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/tabsyn/adapter_report.json b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/tabsyn/adapter_report.json new file mode 100644 index 0000000000000000000000000000000000000000..0a0c288c8fbe97d24c79eea282f8998db3f7cba6 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/tabsyn/adapter_report.json @@ -0,0 +1,7 @@ +{ + "adapter_ready_status": "pass", + "adapter_fail_reason_code": null, + "adapter_fail_detail": null, + "adapter_transforms_applied": [], + "model_input_manifest": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/staged/tabsyn/model_input_manifest.json" +} \ No newline at end of file diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/tabsyn/adapter_transforms_applied.json b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/tabsyn/adapter_transforms_applied.json new file mode 100644 index 0000000000000000000000000000000000000000..0637a088a01e8ddab3bf3fa98dbe804cbde1a0dc --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/tabsyn/adapter_transforms_applied.json @@ -0,0 +1 @@ +[] \ No newline at end of file diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/tabsyn/model_input_manifest.json b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/tabsyn/model_input_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..10520e544068059b6ef2e41b62a652afedc58a42 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/staged/tabsyn/model_input_manifest.json @@ -0,0 +1,75 @@ +{ + "dataset_id": "c3", + "model": "tabsyn", + "target_column": "EI", + "task_type": "classification", + "column_schema": [ + { + "name": "EI", + "role": "target", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 3, + "unique_ratio": 0.001176, + "example_values": [ + "EI", + "IE", + "N" + ] + } + }, + { + "name": "ATRINS-DONOR-521", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2541, + "unique_ratio": 0.99608, + "example_values": [ + "HUMH19-DONOR-2562", + "HUMMHCD8A-ACCEPTOR-733", + "HUMGCB1-ACCEPTOR-6344", + "HUMNEBB-NEG-241", + "HUMATP1A2-NEG-2101" + ] + } + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2426, + "unique_ratio": 0.951, + "example_values": [ + "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG", + "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT", + "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT", + "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA", + "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA" + ] + } + } + ], + "public_manifest": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/staged_input_manifest.json", + "train_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/train.csv", + "val_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/val.csv", + "test_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/test.csv", + "features_json": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/staged/public/staged_features.json", + "public_gate_report": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/tabsyn/tabsyn-c3-20260420_233446/public_gate/public_gate_report.json" +} \ No newline at end of file diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/synthetic/tabsyn_c3/real.csv b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/synthetic/tabsyn_c3/real.csv new file mode 100644 index 0000000000000000000000000000000000000000..2c829ae3517303e73430aec4d48b53660746d179 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/synthetic/tabsyn_c3/real.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8318611a30eea3817eab5e2a68bc0c6b4dad8b9ff813c663c4432a9cefcfc014 +size 32169 diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/synthetic/tabsyn_c3/test.csv b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/synthetic/tabsyn_c3/test.csv new file mode 100644 index 0000000000000000000000000000000000000000..568c3a41fdc10c9cd93a2cbff6695bb13b1c94b0 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/synthetic/tabsyn_c3/test.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9e7236117a72795aa9a0bae6cac4f022ecdd249168315f9a2f989f668bc35b4a +size 2084 diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/tabsyn-c3-2551-20260421_004207.csv b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/tabsyn-c3-2551-20260421_004207.csv new file mode 100644 index 0000000000000000000000000000000000000000..f4baa3c91998732a073a5f82fe61ed5a24290726 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/tabsyn-c3-2551-20260421_004207.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:786774393ca3f60bca374014012d21ee43516d4e23e89c058a7f52eaa2295354 +size 41931 diff --git a/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/train_20260420_233446.log b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/train_20260420_233446.log new file mode 100644 index 0000000000000000000000000000000000000000..eafd7200b5559958e1e6d09304a0d3275d4ab3c1 --- /dev/null +++ b/SynthData0523/main/c3/tabsyn/tabsyn-c3-20260420_233446/train_20260420_233446.log @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7118dbf6f6edb958b4d00586435a08939d60e39489392c498232ecade098edf8 +size 2531016 diff --git a/SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/_tvae_generate.py b/SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/_tvae_generate.py new file mode 100644 index 0000000000000000000000000000000000000000..c154b769719560250e35057c74e05135beb19d1b --- /dev/null +++ b/SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/_tvae_generate.py @@ -0,0 +1,5 @@ +from ctgan.synthesizers.tvae import TVAE +model = TVAE.load("/work/output-SpecializedModels/c3/tvae/tvae-c3-20260322_205426/models_300epochs/tvae_300epochs.pt") +samples = model.sample(2551) +samples.to_csv("/work/output-SpecializedModels/c3/tvae/tvae-c3-20260322_205426/tvae-c3-2551-20260330_065244.csv", index=False) +print(f"[TVAE] Generated 2551 rows -> /work/output-SpecializedModels/c3/tvae/tvae-c3-20260322_205426/tvae-c3-2551-20260330_065244.csv") diff --git a/SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/_tvae_train.py b/SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/_tvae_train.py new file mode 100644 index 0000000000000000000000000000000000000000..3f4d2e4a6604d9525fe457159246cd6121dd8934 --- /dev/null +++ b/SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/_tvae_train.py @@ -0,0 +1,16 @@ +import json, sys +import pandas as pd +from ctgan.data import read_csv +from ctgan.synthesizers.tvae import TVAE + +csv_path = "/work/output-SpecializedModels/c3/tvae/tvae-c3-20260322_205426/staged/public/train.csv" +meta_path = "/work/output-SpecializedModels/c3/tvae/tvae-c3-20260322_205426/tvae_metadata.json" +save_path = "/work/output-SpecializedModels/c3/tvae/tvae-c3-20260322_205426/models_300epochs/tvae_300epochs.pt" +epochs = 300 + +data, discrete_columns = read_csv(csv_path, meta_path, header=True, discrete=None) +print(f"[TVAE] Training on {len(data)} rows, {len(data.columns)} cols, epochs={epochs}") +model = TVAE(epochs=epochs, batch_size=500) +model.fit(data, discrete_columns) +model.save(save_path) +print(f"[TVAE] Model saved -> {save_path}") diff --git a/SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/gen_20260322_205517.log b/SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/gen_20260322_205517.log new file mode 100644 index 0000000000000000000000000000000000000000..631e484cc8af375b036ea21216d55189ae215530 --- /dev/null +++ b/SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/gen_20260322_205517.log @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:322026ca861f2521165912a7bb2ac73444ecf2eb1cc804173a74b2ab34955de6 +size 126 diff --git a/SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/gen_20260330_065244.log b/SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/gen_20260330_065244.log new file mode 100644 index 0000000000000000000000000000000000000000..11b9c4f8793b01785fe276c0306492e86c47d5eb --- /dev/null +++ b/SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/gen_20260330_065244.log @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8633e92b992a170dc5bc0b06885f3cfea523a1ee3a65f94b3d54ec0f62cc7885 +size 126 diff --git a/SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/input_snapshot.json b/SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/input_snapshot.json new file mode 100644 index 0000000000000000000000000000000000000000..f273664f1666136046d455c7750e44a34ea5dac2 --- /dev/null +++ b/SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/input_snapshot.json @@ -0,0 +1,36 @@ +{ + "dataset_id": "c3", + "model": "tvae", + "inputs": { + "train_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-train.csv", + "exists": true, + "size": 213326, + "sha256": "a1ee97b37e9abc68953c8bb4c99a5f8535c68b121c60de73d3e23fd4beb516f3" + }, + "val_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-val.csv", + "exists": true, + "size": 26805, + "sha256": "5f384eded9999ef705f6b10ae0d20ce981a1b92339d451e7feb3946e95fdcbd9" + }, + "test_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-test.csv", + "exists": true, + "size": 26871, + "sha256": "3f0c932764d3321b9bc1ae15932af108b80382f4c89248839c02f48e1d08ffad" + }, + "profile_json": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c3/c3-dataset_profile.json", + "exists": true, + "size": 2635, + "sha256": "dfb01e28765bec4ac04cdb273987b23581194b35638d6450dac66f4525614335" + }, + "contract_json": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c3/c3-dataset_contract_v1.json", + "exists": true, + "size": 2422, + "sha256": "a408b4f800a67fc20e9bc37e847c54de7ed6f608b93d440c3933dead213acfca" + } + } +} \ No newline at end of file diff --git a/SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/models_300epochs/train_20260322_205426.log b/SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/models_300epochs/train_20260322_205426.log new file mode 100644 index 0000000000000000000000000000000000000000..d32d774347d7eeb2758ebb37215c4fc04a9ced19 --- /dev/null +++ b/SynthData0523/main/c3/tvae/tvae-c3-20260322_205426/models_300epochs/train_20260322_205426.log @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c130907100507c4a37f2de1e0cab6e01241ffeb241f8ea3ea22fa2edb2eb94e5 +size 169