TopoSlots-MotionData / scripts /visualize_canonical.py
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"""
Visualize canonical naming, side tags, and symmetry pairs across all datasets.
Produces:
1. Per-dataset skeleton with joints colored by side tag (L=red, R=blue, C=gray)
2. Canonical name labels on joints
3. Symmetry pairs connected by dashed lines
4. Cross-dataset canonical consistency heatmap
"""
import sys
import os
from pathlib import Path
import numpy as np
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import Axes3D
import matplotlib.patches as mpatches
project_root = Path(__file__).parent.parent
sys.path.insert(0, str(project_root))
from src.data.skeleton_graph import SkeletonGraph
from scripts.preprocess_bvh import forward_kinematics
RESULT_DIR = project_root / 'results' / 'canonical_check'
RESULT_DIR.mkdir(parents=True, exist_ok=True)
SIDE_COLORS = {'left': '#e74c3c', 'right': '#3498db', 'center': '#95a5a6'}
def plot_skeleton_canonical(ax, positions, parents, side_tags, canonical_names,
symmetry_pairs, title, label_fontsize=6):
"""Plot skeleton with side-colored joints and canonical name labels."""
J = len(parents)
pos = positions
# Draw bones
for j in range(J):
p = parents[j]
if p >= 0:
ax.plot3D([pos[j, 0], pos[p, 0]], [pos[j, 2], pos[p, 2]],
[pos[j, 1], pos[p, 1]], color='#bdc3c7', linewidth=1.5, zorder=1)
# Draw symmetry pairs as dashed lines
for i, j in symmetry_pairs:
if i < J and j < J:
mid_y = (pos[i, 1] + pos[j, 1]) / 2
ax.plot3D([pos[i, 0], pos[j, 0]], [pos[i, 2], pos[j, 2]],
[pos[i, 1], pos[j, 1]], color='#2ecc71', linewidth=0.8,
linestyle='--', alpha=0.5, zorder=2)
# Draw joints colored by side
for j in range(J):
color = SIDE_COLORS.get(side_tags[j], '#95a5a6')
ax.scatter3D([pos[j, 0]], [pos[j, 2]], [pos[j, 1]],
color=color, s=30, zorder=3, edgecolors='black', linewidths=0.3)
# Label joints with canonical names (subsample if too many)
step = max(1, J // 15)
for j in range(0, J, step):
ax.text(pos[j, 0], pos[j, 2], pos[j, 1] + 0.02,
canonical_names[j], fontsize=label_fontsize, ha='center', va='bottom',
color='black', alpha=0.8)
ax.set_title(title, fontsize=10, fontweight='bold')
ax.set_xlabel('X', fontsize=7)
ax.set_ylabel('Z', fontsize=7)
ax.set_zlabel('Y', fontsize=7)
ax.tick_params(labelsize=5)
# Equal axes
mid = pos.mean(axis=0)
span = max(pos.max(axis=0) - pos.min(axis=0)) / 2 + 0.05
ax.set_xlim(mid[0] - span, mid[0] + span)
ax.set_ylim(mid[2] - span, mid[2] + span)
ax.set_zlim(mid[1] - span, mid[1] + span)
def get_rest_pose(dataset_path, dataset_id):
"""Get rest pose joint positions from first motion."""
motions_dir = dataset_path / 'motions'
files = sorted(os.listdir(motions_dir))
if not files:
return None
d = dict(np.load(motions_dir / files[0], allow_pickle=True))
return d['joint_positions'][0] # first frame
def visualize_human_datasets():
"""Plot 1: All 6 human datasets side by side."""
fig = plt.figure(figsize=(24, 8))
datasets = ['humanml3d', 'lafan1', '100style', 'bandai_namco', 'cmu_mocap', 'mixamo']
for idx, ds in enumerate(datasets):
ds_path = project_root / 'data' / 'processed' / ds
s = dict(np.load(ds_path / 'skeleton.npz', allow_pickle=True))
sg = SkeletonGraph.from_dict(s)
canon = [str(n) for n in s['canonical_names']]
rest_pos = get_rest_pose(ds_path, ds)
if rest_pos is None:
continue
ax = fig.add_subplot(1, 6, idx + 1, projection='3d')
plot_skeleton_canonical(
ax, rest_pos, sg.parent_indices, sg.side_tags, canon,
sg.symmetry_pairs,
f'{ds}\n{sg.num_joints}j, {len(sg.symmetry_pairs)} sym pairs',
label_fontsize=5 if sg.num_joints > 30 else 6,
)
# Legend
patches = [
mpatches.Patch(color=SIDE_COLORS['left'], label='Left'),
mpatches.Patch(color=SIDE_COLORS['right'], label='Right'),
mpatches.Patch(color=SIDE_COLORS['center'], label='Center'),
mpatches.Patch(color='#2ecc71', label='Symmetry pair'),
]
fig.legend(handles=patches, loc='lower center', ncol=4, fontsize=9)
plt.suptitle('Human Datasets — Canonical Names + Side Tags + Symmetry',
fontsize=14, fontweight='bold')
plt.tight_layout(rect=[0, 0.05, 1, 0.95])
out = RESULT_DIR / 'human_canonical_overview.png'
plt.savefig(out, dpi=150, bbox_inches='tight')
plt.close()
print(f'Saved: {out}')
def visualize_zoo_animals():
"""Plot 2: Diverse Zoo animals with canonical names."""
species = ['Dog', 'Cat', 'Horse', 'Eagle', 'Trex', 'Spider',
'Ant', 'Anaconda', 'Dragon', 'Crab', 'Elephant', 'Bat']
fig = plt.figure(figsize=(24, 18))
zoo_path = project_root / 'data' / 'processed' / 'truebones_zoo'
motions_dir = zoo_path / 'motions'
# Find one motion per species
species_motions = {}
for f in sorted(os.listdir(motions_dir)):
d = dict(np.load(motions_dir / f, allow_pickle=True))
sp = str(d.get('species', ''))
if sp in species and sp not in species_motions:
species_motions[sp] = d
for idx, sp in enumerate(species):
if sp not in species_motions:
continue
d = species_motions[sp]
skel_path = zoo_path / 'skeletons' / f'{sp}.npz'
if not skel_path.exists():
continue
s = dict(np.load(skel_path, allow_pickle=True))
sg = SkeletonGraph.from_dict(s)
canon = [str(n) for n in s['canonical_names']]
rest_pos = d['joint_positions'][0]
ax = fig.add_subplot(3, 4, idx + 1, projection='3d')
plot_skeleton_canonical(
ax, rest_pos, sg.parent_indices, sg.side_tags, canon,
sg.symmetry_pairs,
f'{sp} ({sg.num_joints}j, {len(sg.symmetry_pairs)} sym)',
label_fontsize=5,
)
patches = [
mpatches.Patch(color=SIDE_COLORS['left'], label='Left'),
mpatches.Patch(color=SIDE_COLORS['right'], label='Right'),
mpatches.Patch(color=SIDE_COLORS['center'], label='Center'),
mpatches.Patch(color='#2ecc71', label='Symmetry pair'),
]
fig.legend(handles=patches, loc='lower center', ncol=4, fontsize=10)
plt.suptitle('Truebones Zoo — Canonical Names + Side Tags + Symmetry',
fontsize=14, fontweight='bold')
plt.tight_layout(rect=[0, 0.04, 1, 0.96])
out = RESULT_DIR / 'zoo_canonical_overview.png'
plt.savefig(out, dpi=150, bbox_inches='tight')
plt.close()
print(f'Saved: {out}')
def visualize_cross_dataset_consistency():
"""Plot 3: Heatmap showing canonical name consistency across datasets."""
# Collect canonical names for core body parts across datasets
core_parts = [
'pelvis', 'spine lower', 'spine mid', 'spine upper', 'neck', 'head',
'left collar', 'left upper arm', 'left forearm', 'left hand',
'right collar', 'right upper arm', 'right forearm', 'right hand',
'left upper leg', 'left lower leg', 'left foot', 'left toe',
'right upper leg', 'right lower leg', 'right foot', 'right toe',
]
datasets = ['humanml3d', 'lafan1', '100style', 'bandai_namco', 'cmu_mocap', 'mixamo']
matrix = np.zeros((len(core_parts), len(datasets)), dtype=np.float32)
for j, ds in enumerate(datasets):
s = dict(np.load(f'data/processed/{ds}/skeleton.npz', allow_pickle=True))
canon_set = set(str(n) for n in s['canonical_names'])
for i, part in enumerate(core_parts):
matrix[i, j] = 1.0 if part in canon_set else 0.0
fig, ax = plt.subplots(figsize=(10, 12))
im = ax.imshow(matrix, cmap='RdYlGn', aspect='auto', vmin=0, vmax=1)
ax.set_xticks(range(len(datasets)))
ax.set_xticklabels(datasets, rotation=45, ha='right', fontsize=9)
ax.set_yticks(range(len(core_parts)))
ax.set_yticklabels(core_parts, fontsize=9)
# Annotate cells
for i in range(len(core_parts)):
for j in range(len(datasets)):
text = '✓' if matrix[i, j] > 0.5 else '✗'
color = 'white' if matrix[i, j] > 0.5 else 'red'
ax.text(j, i, text, ha='center', va='center', fontsize=10, color=color)
ax.set_title('Cross-Dataset Canonical Name Coverage\n(22 core human body parts)',
fontsize=12, fontweight='bold')
plt.colorbar(im, ax=ax, label='Present in dataset', shrink=0.6)
plt.tight_layout()
out = RESULT_DIR / 'canonical_consistency_heatmap.png'
plt.savefig(out, dpi=150, bbox_inches='tight')
plt.close()
print(f'Saved: {out}')
def visualize_side_tag_stats():
"""Plot 4: Bar chart of side tag distribution per dataset."""
all_data = []
labels = []
datasets = ['humanml3d', 'lafan1', '100style', 'bandai_namco', 'cmu_mocap', 'mixamo']
for ds in datasets:
s = dict(np.load(f'data/processed/{ds}/skeleton.npz', allow_pickle=True))
sg = SkeletonGraph.from_dict(s)
n_l = sum(1 for t in sg.side_tags if t == 'left')
n_r = sum(1 for t in sg.side_tags if t == 'right')
n_c = sum(1 for t in sg.side_tags if t == 'center')
all_data.append((n_l, n_r, n_c, len(sg.symmetry_pairs)))
labels.append(f'{ds}\n({sg.num_joints}j)')
# Add Zoo species
for sp in ['Dog', 'Cat', 'Horse', 'Eagle', 'Trex', 'Spider', 'Anaconda', 'Dragon']:
s = dict(np.load(f'data/processed/truebones_zoo/skeletons/{sp}.npz', allow_pickle=True))
sg = SkeletonGraph.from_dict(s)
n_l = sum(1 for t in sg.side_tags if t == 'left')
n_r = sum(1 for t in sg.side_tags if t == 'right')
n_c = sum(1 for t in sg.side_tags if t == 'center')
all_data.append((n_l, n_r, n_c, len(sg.symmetry_pairs)))
labels.append(f'{sp}\n({sg.num_joints}j)')
fig, (ax1, ax2) = plt.subplots(2, 1, figsize=(16, 10))
x = range(len(labels))
lefts = [d[0] for d in all_data]
rights = [d[1] for d in all_data]
centers = [d[2] for d in all_data]
syms = [d[3] for d in all_data]
ax1.bar(x, lefts, color=SIDE_COLORS['left'], label='Left', alpha=0.8)
ax1.bar(x, rights, bottom=lefts, color=SIDE_COLORS['right'], label='Right', alpha=0.8)
ax1.bar(x, centers, bottom=[l+r for l,r in zip(lefts, rights)],
color=SIDE_COLORS['center'], label='Center', alpha=0.8)
ax1.set_xticks(x)
ax1.set_xticklabels(labels, fontsize=8)
ax1.set_ylabel('Joint Count')
ax1.set_title('Side Tag Distribution per Dataset/Species', fontweight='bold')
ax1.legend()
ax1.axvline(x=5.5, color='black', linestyle='--', alpha=0.3)
ax1.text(2.5, max(lefts)*2.5, 'Human', ha='center', fontsize=10, style='italic')
ax1.text(9.5, max(lefts)*2.5, 'Zoo Animals', ha='center', fontsize=10, style='italic')
ax2.bar(x, syms, color='#2ecc71', alpha=0.8)
ax2.set_xticks(x)
ax2.set_xticklabels(labels, fontsize=8)
ax2.set_ylabel('Symmetry Pairs')
ax2.set_title('Detected Symmetry Pairs per Dataset/Species', fontweight='bold')
ax2.axvline(x=5.5, color='black', linestyle='--', alpha=0.3)
plt.tight_layout()
out = RESULT_DIR / 'side_tag_stats.png'
plt.savefig(out, dpi=150, bbox_inches='tight')
plt.close()
print(f'Saved: {out}')
if __name__ == '__main__':
print('Generating canonical name visualizations...\n')
visualize_human_datasets()
visualize_zoo_animals()
visualize_cross_dataset_consistency()
visualize_side_tag_stats()
print(f'\nAll saved to: {RESULT_DIR}/')