Datasets:
File size: 7,862 Bytes
8b26347 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 | # Main panel summary
- Total probes emitted: **10000** (target 10000)
- Seed: 42
- Length range: 128-1024 bp
## Per-element breakdown
| element | group | target | emitted | datasets |
|:------------------------|:--------|---------:|----------:|-----------:|
| promoter | Human | 1400 | 1400 | 3 |
| enhancer | Human | 1400 | 1400 | 1 |
| splice_donor | Human | 600 | 600 | 1 |
| splice_acceptor | Human | 600 | 600 | 1 |
| chromatin_access | Plant | 450 | 450 | 7 |
| polyA | Plant | 350 | 350 | 6 |
| lncRNA | Plant | 300 | 300 | 6 |
| nascent_RNA | Plant | 200 | 200 | 1 |
| splicing_plant_donor | Plant | 150 | 150 | 1 |
| splicing_plant_acceptor | Plant | 150 | 150 | 1 |
| yeast_genome | Fungi | 1200 | 1200 | 10 |
| fungi_genome | Fungi | 1500 | 1500 | 1 |
| virus_variants | Virus | 600 | 600 | 1 |
| virus_species | Virus | 1100 | 1100 | 1 |
## Length distribution
| count | mean | std | min | 25% | 50% | 75% | max |
|--------:|-------:|------:|------:|------:|------:|------:|------:|
| 10000 | 610.1 | 334.9 | 156 | 300 | 500 | 1024 | 1024 |
## Species × functional element cross-tab
| functional_element | species | n |
|:------------------------|:--------------------------|-----:|
| chromatin_access | Arabidopsis thaliana | 64 |
| chromatin_access | Brachypodium distachyon | 64 |
| chromatin_access | Oryza sativa MH63 | 64 |
| chromatin_access | Oryza sativa ZS97 | 64 |
| chromatin_access | Setaria italica | 64 |
| chromatin_access | Sorghum bicolor | 65 |
| chromatin_access | Zea mays | 65 |
| enhancer | Homo sapiens | 1400 |
| fungi_genome | fungi_sp_0 | 75 |
| fungi_genome | fungi_sp_1 | 75 |
| fungi_genome | fungi_sp_10 | 75 |
| fungi_genome | fungi_sp_11 | 75 |
| fungi_genome | fungi_sp_12 | 75 |
| fungi_genome | fungi_sp_13 | 75 |
| fungi_genome | fungi_sp_14 | 75 |
| fungi_genome | fungi_sp_15 | 75 |
| fungi_genome | fungi_sp_16 | 75 |
| fungi_genome | fungi_sp_17 | 75 |
| fungi_genome | fungi_sp_18 | 75 |
| fungi_genome | fungi_sp_19 | 75 |
| fungi_genome | fungi_sp_2 | 75 |
| fungi_genome | fungi_sp_3 | 75 |
| fungi_genome | fungi_sp_4 | 75 |
| fungi_genome | fungi_sp_5 | 75 |
| fungi_genome | fungi_sp_6 | 75 |
| fungi_genome | fungi_sp_7 | 75 |
| fungi_genome | fungi_sp_8 | 75 |
| fungi_genome | fungi_sp_9 | 75 |
| lncRNA | Glycine max | 50 |
| lncRNA | Manihot esculenta | 50 |
| lncRNA | Solanum lycopersicum | 50 |
| lncRNA | Sorghum bicolor | 50 |
| lncRNA | Triticum aestivum | 50 |
| lncRNA | Zea mays | 50 |
| nascent_RNA | Manihot esculenta | 200 |
| polyA | Arabidopsis thaliana | 58 |
| polyA | Chlamydomonas reinhardtii | 58 |
| polyA | Medicago truncatula | 58 |
| polyA | Oryza sativa indica | 58 |
| polyA | Oryza sativa japonica | 59 |
| polyA | Trifolium pratense | 59 |
| promoter | Homo sapiens | 1400 |
| splice_acceptor | Homo sapiens | 600 |
| splice_donor | Homo sapiens | 600 |
| splicing_plant_acceptor | Arabidopsis thaliana | 150 |
| splicing_plant_donor | Arabidopsis thaliana | 150 |
| virus_species | virus_sp_0 | 44 |
| virus_species | virus_sp_1 | 44 |
| virus_species | virus_sp_10 | 44 |
| virus_species | virus_sp_11 | 44 |
| virus_species | virus_sp_12 | 44 |
| virus_species | virus_sp_13 | 44 |
| virus_species | virus_sp_14 | 44 |
| virus_species | virus_sp_15 | 44 |
| virus_species | virus_sp_16 | 44 |
| virus_species | virus_sp_17 | 44 |
| virus_species | virus_sp_18 | 44 |
| virus_species | virus_sp_19 | 44 |
| virus_species | virus_sp_2 | 44 |
| virus_species | virus_sp_20 | 44 |
| virus_species | virus_sp_21 | 44 |
| virus_species | virus_sp_22 | 44 |
| virus_species | virus_sp_23 | 44 |
| virus_species | virus_sp_24 | 44 |
| virus_species | virus_sp_3 | 44 |
| virus_species | virus_sp_4 | 44 |
| virus_species | virus_sp_5 | 44 |
| virus_species | virus_sp_6 | 44 |
| virus_species | virus_sp_7 | 44 |
| virus_species | virus_sp_8 | 44 |
| virus_species | virus_sp_9 | 44 |
| virus_variants | covid_var_0 | 67 |
| virus_variants | covid_var_1 | 67 |
| virus_variants | covid_var_2 | 66 |
| virus_variants | covid_var_3 | 67 |
| virus_variants | covid_var_4 | 66 |
| virus_variants | covid_var_5 | 67 |
| virus_variants | covid_var_6 | 66 |
| virus_variants | covid_var_7 | 67 |
| virus_variants | covid_var_8 | 67 |
| yeast_genome | Saccharomyces cerevisiae | 1200 |
## GC content by element
| functional_element | count | mean | min | max |
|:------------------------|--------:|-------:|------:|------:|
| chromatin_access | 450 | 0.49 | 0.239 | 0.75 |
| enhancer | 1400 | 0.483 | 0.2 | 0.81 |
| fungi_genome | 1500 | 0.462 | 0.033 | 0.665 |
| lncRNA | 300 | 0.458 | 0.218 | 0.763 |
| nascent_RNA | 200 | 0.287 | 0.128 | 0.424 |
| polyA | 350 | 0.404 | 0.218 | 0.672 |
| promoter | 1400 | 0.593 | 0.29 | 0.877 |
| splice_acceptor | 600 | 0.487 | 0.252 | 0.838 |
| splice_donor | 600 | 0.46 | 0.242 | 0.712 |
| splicing_plant_acceptor | 150 | 0.393 | 0.261 | 0.505 |
| splicing_plant_donor | 150 | 0.389 | 0.236 | 0.513 |
| virus_species | 1100 | 0.354 | 0.149 | 0.741 |
| virus_variants | 600 | 0.381 | 0.322 | 0.484 |
| yeast_genome | 1200 | 0.383 | 0.232 | 0.552 |
|