Datasets:
Upload panel_manifest.json with huggingface_hub
Browse files- panel_manifest.json +437 -0
panel_manifest.json
ADDED
|
@@ -0,0 +1,437 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"total_probes_requested": 10000,
|
| 3 |
+
"seed": 42,
|
| 4 |
+
"length_range": [
|
| 5 |
+
128,
|
| 6 |
+
1024
|
| 7 |
+
],
|
| 8 |
+
"elements": {
|
| 9 |
+
"promoter": {
|
| 10 |
+
"species_group": "Human",
|
| 11 |
+
"n_probes_target": 1400,
|
| 12 |
+
"datasets": [
|
| 13 |
+
{
|
| 14 |
+
"path": "data/GUE/prom/prom_300_all/train.csv",
|
| 15 |
+
"status": "OK",
|
| 16 |
+
"pool_size": 23672,
|
| 17 |
+
"target_n": 467,
|
| 18 |
+
"emitted_n": 467,
|
| 19 |
+
"sub_seed": 478163327
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"path": "data/GUE/prom/prom_300_notata/train.csv",
|
| 23 |
+
"status": "OK",
|
| 24 |
+
"pool_size": 21224,
|
| 25 |
+
"target_n": 467,
|
| 26 |
+
"emitted_n": 467,
|
| 27 |
+
"sub_seed": 107420369
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"path": "data/GUE/prom/prom_300_tata/train.csv",
|
| 31 |
+
"status": "OK",
|
| 32 |
+
"pool_size": 2444,
|
| 33 |
+
"target_n": 466,
|
| 34 |
+
"emitted_n": 466,
|
| 35 |
+
"sub_seed": 1181241943
|
| 36 |
+
}
|
| 37 |
+
],
|
| 38 |
+
"n_probes_emitted": 1400
|
| 39 |
+
},
|
| 40 |
+
"enhancer": {
|
| 41 |
+
"species_group": "Human",
|
| 42 |
+
"n_probes_target": 1400,
|
| 43 |
+
"datasets": [
|
| 44 |
+
{
|
| 45 |
+
"path": "data/dna_foundation_benchmark/enhancers/enhancer/train.csv",
|
| 46 |
+
"status": "OK",
|
| 47 |
+
"pool_size": 7484,
|
| 48 |
+
"target_n": 1400,
|
| 49 |
+
"emitted_n": 1400,
|
| 50 |
+
"sub_seed": 1051802512
|
| 51 |
+
}
|
| 52 |
+
],
|
| 53 |
+
"n_probes_emitted": 1400
|
| 54 |
+
},
|
| 55 |
+
"splice_donor": {
|
| 56 |
+
"species_group": "Human",
|
| 57 |
+
"n_probes_target": 600,
|
| 58 |
+
"datasets": [
|
| 59 |
+
{
|
| 60 |
+
"path": "data/GUE/splice/reconstructed/train.csv",
|
| 61 |
+
"status": "OK",
|
| 62 |
+
"pool_size": 8043,
|
| 63 |
+
"target_n": 600,
|
| 64 |
+
"emitted_n": 600,
|
| 65 |
+
"sub_seed": 958682846
|
| 66 |
+
}
|
| 67 |
+
],
|
| 68 |
+
"n_probes_emitted": 600
|
| 69 |
+
},
|
| 70 |
+
"splice_acceptor": {
|
| 71 |
+
"species_group": "Human",
|
| 72 |
+
"n_probes_target": 600,
|
| 73 |
+
"datasets": [
|
| 74 |
+
{
|
| 75 |
+
"path": "data/GUE/splice/reconstructed/train.csv",
|
| 76 |
+
"status": "OK",
|
| 77 |
+
"pool_size": 7988,
|
| 78 |
+
"target_n": 600,
|
| 79 |
+
"emitted_n": 600,
|
| 80 |
+
"sub_seed": 599310825
|
| 81 |
+
}
|
| 82 |
+
],
|
| 83 |
+
"n_probes_emitted": 600
|
| 84 |
+
},
|
| 85 |
+
"chromatin_access": {
|
| 86 |
+
"species_group": "Plant",
|
| 87 |
+
"n_probes_target": 450,
|
| 88 |
+
"datasets": [
|
| 89 |
+
{
|
| 90 |
+
"path": "data/PGB/chromatin_access/arabidopis_thaliana_train.fa",
|
| 91 |
+
"status": "OK",
|
| 92 |
+
"pool_size": 1078703,
|
| 93 |
+
"target_n": 64,
|
| 94 |
+
"emitted_n": 64,
|
| 95 |
+
"sub_seed": 440213415
|
| 96 |
+
},
|
| 97 |
+
{
|
| 98 |
+
"path": "data/PGB/chromatin_access/brachypodium_distachyon_train.fa",
|
| 99 |
+
"status": "OK",
|
| 100 |
+
"pool_size": 684113,
|
| 101 |
+
"target_n": 64,
|
| 102 |
+
"emitted_n": 64,
|
| 103 |
+
"sub_seed": 373399426
|
| 104 |
+
},
|
| 105 |
+
{
|
| 106 |
+
"path": "data/PGB/chromatin_access/oryza_sativa_MH63_RS2_train.fa",
|
| 107 |
+
"status": "OK",
|
| 108 |
+
"pool_size": 665049,
|
| 109 |
+
"target_n": 64,
|
| 110 |
+
"emitted_n": 64,
|
| 111 |
+
"sub_seed": 1812140441
|
| 112 |
+
},
|
| 113 |
+
{
|
| 114 |
+
"path": "data/PGB/chromatin_access/oryza_sativa_ZS97_RS2_train.fa",
|
| 115 |
+
"status": "OK",
|
| 116 |
+
"pool_size": 673218,
|
| 117 |
+
"target_n": 64,
|
| 118 |
+
"emitted_n": 64,
|
| 119 |
+
"sub_seed": 136505587
|
| 120 |
+
},
|
| 121 |
+
{
|
| 122 |
+
"path": "data/PGB/chromatin_access/setaria_italica_train.fa",
|
| 123 |
+
"status": "OK",
|
| 124 |
+
"pool_size": 756105,
|
| 125 |
+
"target_n": 64,
|
| 126 |
+
"emitted_n": 64,
|
| 127 |
+
"sub_seed": 127978094
|
| 128 |
+
},
|
| 129 |
+
{
|
| 130 |
+
"path": "data/PGB/chromatin_access/sorghum_bicolor_train.fa",
|
| 131 |
+
"status": "OK",
|
| 132 |
+
"pool_size": 637815,
|
| 133 |
+
"target_n": 65,
|
| 134 |
+
"emitted_n": 65,
|
| 135 |
+
"sub_seed": 402418010
|
| 136 |
+
},
|
| 137 |
+
{
|
| 138 |
+
"path": "data/PGB/chromatin_access/zea_mays_train.fa",
|
| 139 |
+
"status": "OK",
|
| 140 |
+
"pool_size": 173468,
|
| 141 |
+
"target_n": 65,
|
| 142 |
+
"emitted_n": 65,
|
| 143 |
+
"sub_seed": 939042955
|
| 144 |
+
}
|
| 145 |
+
],
|
| 146 |
+
"n_probes_emitted": 450
|
| 147 |
+
},
|
| 148 |
+
"polyA": {
|
| 149 |
+
"species_group": "Plant",
|
| 150 |
+
"n_probes_target": 350,
|
| 151 |
+
"datasets": [
|
| 152 |
+
{
|
| 153 |
+
"path": "data/PGB/poly_a/arabidopsis_thaliana_train.fa",
|
| 154 |
+
"status": "OK",
|
| 155 |
+
"pool_size": 170835,
|
| 156 |
+
"target_n": 58,
|
| 157 |
+
"emitted_n": 58,
|
| 158 |
+
"sub_seed": 999270936
|
| 159 |
+
},
|
| 160 |
+
{
|
| 161 |
+
"path": "data/PGB/poly_a/chlamydomonas_reinhardtii_train.fa",
|
| 162 |
+
"status": "OK",
|
| 163 |
+
"pool_size": 90319,
|
| 164 |
+
"target_n": 58,
|
| 165 |
+
"emitted_n": 58,
|
| 166 |
+
"sub_seed": 113971123
|
| 167 |
+
},
|
| 168 |
+
{
|
| 169 |
+
"path": "data/PGB/poly_a/medicago_truncatula_train.fa",
|
| 170 |
+
"status": "OK",
|
| 171 |
+
"pool_size": 47249,
|
| 172 |
+
"target_n": 58,
|
| 173 |
+
"emitted_n": 58,
|
| 174 |
+
"sub_seed": 854001193
|
| 175 |
+
},
|
| 176 |
+
{
|
| 177 |
+
"path": "data/PGB/poly_a/oryza_sativa_indica_group_train.fa",
|
| 178 |
+
"status": "OK",
|
| 179 |
+
"pool_size": 97278,
|
| 180 |
+
"target_n": 58,
|
| 181 |
+
"emitted_n": 58,
|
| 182 |
+
"sub_seed": 1801823908
|
| 183 |
+
},
|
| 184 |
+
{
|
| 185 |
+
"path": "data/PGB/poly_a/oryza_sativa_japonica_group_train.fa",
|
| 186 |
+
"status": "OK",
|
| 187 |
+
"pool_size": 120613,
|
| 188 |
+
"target_n": 59,
|
| 189 |
+
"emitted_n": 59,
|
| 190 |
+
"sub_seed": 946785248
|
| 191 |
+
},
|
| 192 |
+
{
|
| 193 |
+
"path": "data/PGB/poly_a/trifolium_pratense_train.fa",
|
| 194 |
+
"status": "OK",
|
| 195 |
+
"pool_size": 103779,
|
| 196 |
+
"target_n": 59,
|
| 197 |
+
"emitted_n": 59,
|
| 198 |
+
"sub_seed": 1929338154
|
| 199 |
+
}
|
| 200 |
+
],
|
| 201 |
+
"n_probes_emitted": 350
|
| 202 |
+
},
|
| 203 |
+
"lncRNA": {
|
| 204 |
+
"species_group": "Plant",
|
| 205 |
+
"n_probes_target": 300,
|
| 206 |
+
"datasets": [
|
| 207 |
+
{
|
| 208 |
+
"path": "data/PGB/lncrna/g_max_train.fa",
|
| 209 |
+
"status": "OK",
|
| 210 |
+
"pool_size": 9903,
|
| 211 |
+
"target_n": 50,
|
| 212 |
+
"emitted_n": 50,
|
| 213 |
+
"sub_seed": 1194819984
|
| 214 |
+
},
|
| 215 |
+
{
|
| 216 |
+
"path": "data/PGB/lncrna/m_esculenta_train.fa",
|
| 217 |
+
"status": "OK",
|
| 218 |
+
"pool_size": 4111,
|
| 219 |
+
"target_n": 50,
|
| 220 |
+
"emitted_n": 50,
|
| 221 |
+
"sub_seed": 27911967
|
| 222 |
+
},
|
| 223 |
+
{
|
| 224 |
+
"path": "data/PGB/lncrna/s_bicolor_train.fa",
|
| 225 |
+
"status": "OK",
|
| 226 |
+
"pool_size": 5906,
|
| 227 |
+
"target_n": 50,
|
| 228 |
+
"emitted_n": 50,
|
| 229 |
+
"sub_seed": 685731524
|
| 230 |
+
},
|
| 231 |
+
{
|
| 232 |
+
"path": "data/PGB/lncrna/s_lycopersicum_train.fa",
|
| 233 |
+
"status": "OK",
|
| 234 |
+
"pool_size": 6467,
|
| 235 |
+
"target_n": 50,
|
| 236 |
+
"emitted_n": 50,
|
| 237 |
+
"sub_seed": 1815115025
|
| 238 |
+
},
|
| 239 |
+
{
|
| 240 |
+
"path": "data/PGB/lncrna/t_aestivum_train.fa",
|
| 241 |
+
"status": "OK",
|
| 242 |
+
"pool_size": 10963,
|
| 243 |
+
"target_n": 50,
|
| 244 |
+
"emitted_n": 50,
|
| 245 |
+
"sub_seed": 1461364854
|
| 246 |
+
},
|
| 247 |
+
{
|
| 248 |
+
"path": "data/PGB/lncrna/z_mays_train.fa",
|
| 249 |
+
"status": "OK",
|
| 250 |
+
"pool_size": 8048,
|
| 251 |
+
"target_n": 50,
|
| 252 |
+
"emitted_n": 50,
|
| 253 |
+
"sub_seed": 1193448329
|
| 254 |
+
}
|
| 255 |
+
],
|
| 256 |
+
"n_probes_emitted": 300
|
| 257 |
+
},
|
| 258 |
+
"nascent_RNA": {
|
| 259 |
+
"species_group": "Plant",
|
| 260 |
+
"n_probes_target": 200,
|
| 261 |
+
"datasets": [
|
| 262 |
+
{
|
| 263 |
+
"path": "data/PGB/pro_seq/m_esculenta_train.fa",
|
| 264 |
+
"status": "OK",
|
| 265 |
+
"pool_size": 16852,
|
| 266 |
+
"target_n": 200,
|
| 267 |
+
"emitted_n": 200,
|
| 268 |
+
"sub_seed": 667779376
|
| 269 |
+
}
|
| 270 |
+
],
|
| 271 |
+
"n_probes_emitted": 200
|
| 272 |
+
},
|
| 273 |
+
"splicing_plant_donor": {
|
| 274 |
+
"species_group": "Plant",
|
| 275 |
+
"n_probes_target": 150,
|
| 276 |
+
"datasets": [
|
| 277 |
+
{
|
| 278 |
+
"path": "data/PGB/splicing/arabidopsis_thaliana_donor_train.fa",
|
| 279 |
+
"status": "OK",
|
| 280 |
+
"pool_size": 2588034,
|
| 281 |
+
"target_n": 150,
|
| 282 |
+
"emitted_n": 150,
|
| 283 |
+
"sub_seed": 924765563
|
| 284 |
+
}
|
| 285 |
+
],
|
| 286 |
+
"n_probes_emitted": 150
|
| 287 |
+
},
|
| 288 |
+
"splicing_plant_acceptor": {
|
| 289 |
+
"species_group": "Plant",
|
| 290 |
+
"n_probes_target": 150,
|
| 291 |
+
"datasets": [
|
| 292 |
+
{
|
| 293 |
+
"path": "data/PGB/splicing/arabidopsis_thaliana_acceptor_train.fa",
|
| 294 |
+
"status": "OK",
|
| 295 |
+
"pool_size": 1704844,
|
| 296 |
+
"target_n": 150,
|
| 297 |
+
"emitted_n": 150,
|
| 298 |
+
"sub_seed": 1445662585
|
| 299 |
+
}
|
| 300 |
+
],
|
| 301 |
+
"n_probes_emitted": 150
|
| 302 |
+
},
|
| 303 |
+
"yeast_genome": {
|
| 304 |
+
"species_group": "Fungi",
|
| 305 |
+
"n_probes_target": 1200,
|
| 306 |
+
"datasets": [
|
| 307 |
+
{
|
| 308 |
+
"path": "data/GUE/EMP/H3/train.csv",
|
| 309 |
+
"status": "OK",
|
| 310 |
+
"pool_size": 11971,
|
| 311 |
+
"target_n": 120,
|
| 312 |
+
"emitted_n": 120,
|
| 313 |
+
"sub_seed": 438989805
|
| 314 |
+
},
|
| 315 |
+
{
|
| 316 |
+
"path": "data/GUE/EMP/H3K14ac/train.csv",
|
| 317 |
+
"status": "OK",
|
| 318 |
+
"pool_size": 26438,
|
| 319 |
+
"target_n": 120,
|
| 320 |
+
"emitted_n": 120,
|
| 321 |
+
"sub_seed": 398340369
|
| 322 |
+
},
|
| 323 |
+
{
|
| 324 |
+
"path": "data/GUE/EMP/H3K36me3/train.csv",
|
| 325 |
+
"status": "OK",
|
| 326 |
+
"pool_size": 27904,
|
| 327 |
+
"target_n": 120,
|
| 328 |
+
"emitted_n": 120,
|
| 329 |
+
"sub_seed": 1631775357
|
| 330 |
+
},
|
| 331 |
+
{
|
| 332 |
+
"path": "data/GUE/EMP/H3K4me1/train.csv",
|
| 333 |
+
"status": "OK",
|
| 334 |
+
"pool_size": 25341,
|
| 335 |
+
"target_n": 120,
|
| 336 |
+
"emitted_n": 120,
|
| 337 |
+
"sub_seed": 415393687
|
| 338 |
+
},
|
| 339 |
+
{
|
| 340 |
+
"path": "data/GUE/EMP/H3K4me2/train.csv",
|
| 341 |
+
"status": "OK",
|
| 342 |
+
"pool_size": 24545,
|
| 343 |
+
"target_n": 120,
|
| 344 |
+
"emitted_n": 120,
|
| 345 |
+
"sub_seed": 1541804686
|
| 346 |
+
},
|
| 347 |
+
{
|
| 348 |
+
"path": "data/GUE/EMP/H3K4me3/train.csv",
|
| 349 |
+
"status": "OK",
|
| 350 |
+
"pool_size": 29439,
|
| 351 |
+
"target_n": 120,
|
| 352 |
+
"emitted_n": 120,
|
| 353 |
+
"sub_seed": 1477278577
|
| 354 |
+
},
|
| 355 |
+
{
|
| 356 |
+
"path": "data/GUE/EMP/H3K79me3/train.csv",
|
| 357 |
+
"status": "OK",
|
| 358 |
+
"pool_size": 23069,
|
| 359 |
+
"target_n": 120,
|
| 360 |
+
"emitted_n": 120,
|
| 361 |
+
"sub_seed": 1136108454
|
| 362 |
+
},
|
| 363 |
+
{
|
| 364 |
+
"path": "data/GUE/EMP/H3K9ac/train.csv",
|
| 365 |
+
"status": "OK",
|
| 366 |
+
"pool_size": 22224,
|
| 367 |
+
"target_n": 120,
|
| 368 |
+
"emitted_n": 120,
|
| 369 |
+
"sub_seed": 186618211
|
| 370 |
+
},
|
| 371 |
+
{
|
| 372 |
+
"path": "data/GUE/EMP/H4/train.csv",
|
| 373 |
+
"status": "OK",
|
| 374 |
+
"pool_size": 11679,
|
| 375 |
+
"target_n": 120,
|
| 376 |
+
"emitted_n": 120,
|
| 377 |
+
"sub_seed": 1973214822
|
| 378 |
+
},
|
| 379 |
+
{
|
| 380 |
+
"path": "data/GUE/EMP/H4ac/train.csv",
|
| 381 |
+
"status": "OK",
|
| 382 |
+
"pool_size": 27275,
|
| 383 |
+
"target_n": 120,
|
| 384 |
+
"emitted_n": 120,
|
| 385 |
+
"sub_seed": 536124280
|
| 386 |
+
}
|
| 387 |
+
],
|
| 388 |
+
"n_probes_emitted": 1200
|
| 389 |
+
},
|
| 390 |
+
"fungi_genome": {
|
| 391 |
+
"species_group": "Fungi",
|
| 392 |
+
"n_probes_target": 1500,
|
| 393 |
+
"datasets": [
|
| 394 |
+
{
|
| 395 |
+
"path": "data/GUE/fungi/species_20/train.csv",
|
| 396 |
+
"status": "OK",
|
| 397 |
+
"pool_size": 8000,
|
| 398 |
+
"target_n": 1500,
|
| 399 |
+
"emitted_n": 1500,
|
| 400 |
+
"sub_seed": 1625792787
|
| 401 |
+
}
|
| 402 |
+
],
|
| 403 |
+
"n_probes_emitted": 1500
|
| 404 |
+
},
|
| 405 |
+
"virus_variants": {
|
| 406 |
+
"species_group": "Virus",
|
| 407 |
+
"n_probes_target": 600,
|
| 408 |
+
"datasets": [
|
| 409 |
+
{
|
| 410 |
+
"path": "data/GUE/virus/covid/train.csv",
|
| 411 |
+
"status": "OK",
|
| 412 |
+
"pool_size": 70605,
|
| 413 |
+
"target_n": 600,
|
| 414 |
+
"emitted_n": 600,
|
| 415 |
+
"sub_seed": 338444264
|
| 416 |
+
}
|
| 417 |
+
],
|
| 418 |
+
"n_probes_emitted": 600
|
| 419 |
+
},
|
| 420 |
+
"virus_species": {
|
| 421 |
+
"species_group": "Virus",
|
| 422 |
+
"n_probes_target": 1100,
|
| 423 |
+
"datasets": [
|
| 424 |
+
{
|
| 425 |
+
"path": "data/GUE/virus/species_40/train.csv",
|
| 426 |
+
"status": "OK",
|
| 427 |
+
"pool_size": 4000,
|
| 428 |
+
"target_n": 1100,
|
| 429 |
+
"emitted_n": 1100,
|
| 430 |
+
"sub_seed": 1259191105
|
| 431 |
+
}
|
| 432 |
+
],
|
| 433 |
+
"n_probes_emitted": 1100
|
| 434 |
+
}
|
| 435 |
+
},
|
| 436 |
+
"total_probes_emitted": 10000
|
| 437 |
+
}
|