Update load_lib.R
Browse files- load_lib.R +40 -67
load_lib.R
CHANGED
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@@ -21,11 +21,11 @@ save_r_lib_zip <- function(zip_out = "/content/R_library.zip",
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# 2) LOAD: Unzip rồi dán đè packages vào R library hiện tại
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# =========================
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load_r_lib_zip <- function(zip_path,
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if (!file.exists(zip_path)) stop("Zip file not found: ", zip_path)
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dir.create(target_lib, recursive = TRUE, showWarnings = FALSE)
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@@ -35,81 +35,54 @@ load_r_lib_zip <- function(zip_path,
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message("Target R lib: ", target_lib)
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}
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#
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backup_tar <- NULL
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if (backup) {
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backup_tar <- file.path(
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backup_dir,
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sprintf("R_lib_backup_%s.tar.gz", format(Sys.time(), "%Y%m%d_%H%M%S"))
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)
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old <- getwd()
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setwd(dirname(target_lib))
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utils::tar(backup_tar, files = basename(target_lib), compression = "gzip")
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if (!quiet) message("🗄️ Backup saved: ", backup_tar)
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}
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#
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}
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if (!quiet) message("➡️ Trying direct unzip into target_lib ...")
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# unzip trực tiếp; overwrite=TRUE sẽ đè file nếu trùng
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utils::unzip(zip_path, exdir = target_lib, overwrite = TRUE)
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# kiểm tra có package "rụng" vào đúng chỗ chưa
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if (has_packages(target_lib)) {
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direct_ok <- TRUE
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if (!quiet) message("✅ Direct unzip worked (packages detected in target_lib).")
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} else {
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if (!quiet) message("⚠️ Direct unzip did not place packages correctly. Falling back...")
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}
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}
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))
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} else {
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# 3) Option B: Unzip to temp, then locate package dirs and copy/overwrite
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tmp <- tempfile("Rlib_unzip_")
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dir.create(tmp)
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utils::unzip(zip_path, exdir = tmp, overwrite = TRUE)
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# find all package directories (with DESCRIPTION)
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desc_files <- list.files(tmp, pattern = "^DESCRIPTION$", recursive = TRUE, full.names = TRUE)
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pkg_dirs <- unique(dirname(desc_files))
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if (length(pkg_dirs) == 0) stop("Không tìm thấy package nào (không thấy file DESCRIPTION) trong zip.")
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if (!quiet) message("Found packages: ", length(pkg_dirs), " (copying into target_lib...)")
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copied <- 0L
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for (src in pkg_dirs) {
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pkg <- basename(src)
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dest <- file.path(target_lib, pkg)
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system2("bash", c("-lc", paste("rm -rf", shQuote(dest))))
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system2("bash", c("-lc", paste("cp -a", shQuote(src), shQuote(target_lib))))
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copied <- copied + 1L
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}
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if (!quiet) {
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message("✅ Done. Overwritten packages: ", copied)
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message("Library paths now:"); print(.libPaths())
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}
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invisible(list(
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zip_path = zip_path,
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target_lib = target_lib,
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method = "copy_packages",
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overwritten = copied,
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backup_tar = backup_tar
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))
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}
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}
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# 2) LOAD: Unzip rồi dán đè packages vào R library hiện tại
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# =========================
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load_r_lib_zip <- function(zip_path,
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target_lib = .libPaths()[1],
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backup = TRUE,
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backup_dir = "/content",
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overwrite = TRUE,
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quiet = FALSE) {
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if (!file.exists(zip_path)) stop("Zip file not found: ", zip_path)
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dir.create(target_lib, recursive = TRUE, showWarnings = FALSE)
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message("Target R lib: ", target_lib)
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}
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# (optional) backup thư mục library hiện tại
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backup_tar <- NULL
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if (backup) {
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backup_tar <- file.path(
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backup_dir,
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sprintf("R_lib_backup_%s.tar.gz", format(Sys.time(), "%Y%m%d_%H%M%S"))
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)
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old <- getwd()
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on.exit(setwd(old), add = TRUE)
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setwd(dirname(target_lib))
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utils::tar(backup_tar, files = basename(target_lib), compression = "gzip")
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if (!quiet) message("🗄️ Backup saved: ", backup_tar)
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}
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# unzip ra folder tạm
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tmp <- tempfile("Rlib_unzip_")
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dir.create(tmp)
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utils::unzip(zipfile = zip_path, exdir = tmp, overwrite = overwrite)
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# tìm các folder package (có DESCRIPTION)
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desc_files <- list.files(tmp, pattern = "^DESCRIPTION$", recursive = TRUE, full.names = TRUE)
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pkg_dirs <- unique(dirname(desc_files))
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if (length(pkg_dirs) == 0) stop("Không tìm thấy package nào (không thấy file DESCRIPTION) trong zip.")
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if (!quiet) message("Found packages: ", length(pkg_dirs))
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# copy đè từng package
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copied <- 0L
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for (src in pkg_dirs) {
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pkg <- basename(src)
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dest <- file.path(target_lib, pkg)
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# xóa bản cũ để tránh sót file
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system2("bash", c("-lc", paste("rm -rf", shQuote(dest))))
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# copy bản mới vào target_lib
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system2("bash", c("-lc", paste("cp -a", shQuote(src), shQuote(target_lib))))
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copied <- copied + 1L
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}
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if (!quiet) {
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message("✅ Done. Overwritten packages: ", copied)
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message("Library paths now:"); print(.libPaths())
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}
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invisible(list(
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zip_path = zip_path,
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target_lib = target_lib,
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overwritten = copied,
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backup_tar = backup_tar
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))
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}
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