TommyNgx commited on
Commit
b0c7d09
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1 Parent(s): 759906e

Update load_lib.R

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Files changed (1) hide show
  1. load_lib.R +40 -67
load_lib.R CHANGED
@@ -21,11 +21,11 @@ save_r_lib_zip <- function(zip_out = "/content/R_library.zip",
21
  # 2) LOAD: Unzip rồi dán đè packages vào R library hiện tại
22
  # =========================
23
  load_r_lib_zip <- function(zip_path,
24
- target_lib = .libPaths()[1],
25
- backup = TRUE,
26
- backup_dir = "/content",
27
- try_direct_unzip = TRUE,
28
- quiet = FALSE) {
29
 
30
  if (!file.exists(zip_path)) stop("Zip file not found: ", zip_path)
31
  dir.create(target_lib, recursive = TRUE, showWarnings = FALSE)
@@ -35,81 +35,54 @@ load_r_lib_zip <- function(zip_path,
35
  message("Target R lib: ", target_lib)
36
  }
37
 
38
- # 1) Backup (optional)
39
  backup_tar <- NULL
40
  if (backup) {
41
  backup_tar <- file.path(
42
  backup_dir,
43
  sprintf("R_lib_backup_%s.tar.gz", format(Sys.time(), "%Y%m%d_%H%M%S"))
44
  )
45
- old <- getwd(); on.exit(setwd(old), add = TRUE)
 
46
  setwd(dirname(target_lib))
47
  utils::tar(backup_tar, files = basename(target_lib), compression = "gzip")
48
  if (!quiet) message("🗄️ Backup saved: ", backup_tar)
49
  }
50
 
51
- # helper: check if directory looks like an R library (contains package folders with DESCRIPTION)
52
- has_packages <- function(dir) {
53
- any(file.exists(file.path(list.dirs(dir, recursive = FALSE, full.names = TRUE), "DESCRIPTION")))
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
54
  }
55
 
56
- # 2) Option A: Unzip directly into target_lib (fast path)
57
- direct_ok <- FALSE
58
- if (try_direct_unzip) {
59
- if (!quiet) message("➡️ Trying direct unzip into target_lib ...")
60
- # unzip trực tiếp; overwrite=TRUE sẽ đè file nếu trùng
61
- utils::unzip(zip_path, exdir = target_lib, overwrite = TRUE)
62
-
63
- # kiểm tra có package "rụng" vào đúng chỗ chưa
64
- if (has_packages(target_lib)) {
65
- direct_ok <- TRUE
66
- if (!quiet) message("✅ Direct unzip worked (packages detected in target_lib).")
67
- } else {
68
- if (!quiet) message("⚠️ Direct unzip did not place packages correctly. Falling back...")
69
- }
70
  }
71
 
72
- if (direct_ok) {
73
- invisible(list(
74
- zip_path = zip_path,
75
- target_lib = target_lib,
76
- method = "direct_unzip",
77
- backup_tar = backup_tar
78
- ))
79
- } else {
80
- # 3) Option B: Unzip to temp, then locate package dirs and copy/overwrite
81
- tmp <- tempfile("Rlib_unzip_")
82
- dir.create(tmp)
83
- utils::unzip(zip_path, exdir = tmp, overwrite = TRUE)
84
-
85
- # find all package directories (with DESCRIPTION)
86
- desc_files <- list.files(tmp, pattern = "^DESCRIPTION$", recursive = TRUE, full.names = TRUE)
87
- pkg_dirs <- unique(dirname(desc_files))
88
- if (length(pkg_dirs) == 0) stop("Không tìm thấy package nào (không thấy file DESCRIPTION) trong zip.")
89
-
90
- if (!quiet) message("Found packages: ", length(pkg_dirs), " (copying into target_lib...)")
91
-
92
- copied <- 0L
93
- for (src in pkg_dirs) {
94
- pkg <- basename(src)
95
- dest <- file.path(target_lib, pkg)
96
-
97
- system2("bash", c("-lc", paste("rm -rf", shQuote(dest))))
98
- system2("bash", c("-lc", paste("cp -a", shQuote(src), shQuote(target_lib))))
99
- copied <- copied + 1L
100
- }
101
-
102
- if (!quiet) {
103
- message("✅ Done. Overwritten packages: ", copied)
104
- message("Library paths now:"); print(.libPaths())
105
- }
106
-
107
- invisible(list(
108
- zip_path = zip_path,
109
- target_lib = target_lib,
110
- method = "copy_packages",
111
- overwritten = copied,
112
- backup_tar = backup_tar
113
- ))
114
- }
115
  }
 
21
  # 2) LOAD: Unzip rồi dán đè packages vào R library hiện tại
22
  # =========================
23
  load_r_lib_zip <- function(zip_path,
24
+ target_lib = .libPaths()[1],
25
+ backup = TRUE,
26
+ backup_dir = "/content",
27
+ overwrite = TRUE,
28
+ quiet = FALSE) {
29
 
30
  if (!file.exists(zip_path)) stop("Zip file not found: ", zip_path)
31
  dir.create(target_lib, recursive = TRUE, showWarnings = FALSE)
 
35
  message("Target R lib: ", target_lib)
36
  }
37
 
38
+ # (optional) backup thư mục library hiện tại
39
  backup_tar <- NULL
40
  if (backup) {
41
  backup_tar <- file.path(
42
  backup_dir,
43
  sprintf("R_lib_backup_%s.tar.gz", format(Sys.time(), "%Y%m%d_%H%M%S"))
44
  )
45
+ old <- getwd()
46
+ on.exit(setwd(old), add = TRUE)
47
  setwd(dirname(target_lib))
48
  utils::tar(backup_tar, files = basename(target_lib), compression = "gzip")
49
  if (!quiet) message("🗄️ Backup saved: ", backup_tar)
50
  }
51
 
52
+ # unzip ra folder tạm
53
+ tmp <- tempfile("Rlib_unzip_")
54
+ dir.create(tmp)
55
+ utils::unzip(zipfile = zip_path, exdir = tmp, overwrite = overwrite)
56
+
57
+ # tìm các folder package (có DESCRIPTION)
58
+ desc_files <- list.files(tmp, pattern = "^DESCRIPTION$", recursive = TRUE, full.names = TRUE)
59
+ pkg_dirs <- unique(dirname(desc_files))
60
+ if (length(pkg_dirs) == 0) stop("Không tìm thấy package nào (không thấy file DESCRIPTION) trong zip.")
61
+
62
+ if (!quiet) message("Found packages: ", length(pkg_dirs))
63
+
64
+ # copy đè từng package
65
+ copied <- 0L
66
+ for (src in pkg_dirs) {
67
+ pkg <- basename(src)
68
+ dest <- file.path(target_lib, pkg)
69
+
70
+ # xóa bản cũ để tránh sót file
71
+ system2("bash", c("-lc", paste("rm -rf", shQuote(dest))))
72
+ # copy bản mới vào target_lib
73
+ system2("bash", c("-lc", paste("cp -a", shQuote(src), shQuote(target_lib))))
74
+ copied <- copied + 1L
75
  }
76
 
77
+ if (!quiet) {
78
+ message("✅ Done. Overwritten packages: ", copied)
79
+ message("Library paths now:"); print(.libPaths())
 
 
 
 
 
 
 
 
 
 
 
80
  }
81
 
82
+ invisible(list(
83
+ zip_path = zip_path,
84
+ target_lib = target_lib,
85
+ overwritten = copied,
86
+ backup_tar = backup_tar
87
+ ))
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
88
  }