Datasets:
Initial release: 5 MI sessions, 5 calibrator recordings, loader, reports
Browse files- .gitattributes +8 -0
- README.md +247 -0
- data/calibrator/cal_7hz_180s.npz +3 -0
- data/calibrator/cal_7hz_fp1_1000sps_180s.npz +3 -0
- data/calibrator/cal_7hz_fp1_250sps_180s.npz +3 -0
- data/calibrator/cal_7hz_probe11s.npz +3 -0
- data/calibrator/cal_7hz_xt7hz_60s.npz +3 -0
- data/mi/cap32_20260721_224212.npz +3 -0
- data/mi/cap32_20260721_224212_raw.fif +0 -0
- data/mi/cap32_20260722_135310.npz +3 -0
- data/mi/cap32_20260722_135310_raw.fif +3 -0
- data/mi/cap32_20260725_135441_mi.json +114 -0
- data/mi/cap32_20260725_135441_mi.npz +3 -0
- data/mi/cap32_20260725_135441_mi_raw.fif +3 -0
- data/mi/cap32_20260725_143756_hands-rest.json +134 -0
- data/mi/cap32_20260725_143756_hands-rest.npz +3 -0
- data/mi/cap32_20260725_143756_hands-rest_raw.fif +3 -0
- data/mi/cap32_20260725_163251_hands-feet-math.json +161 -0
- data/mi/cap32_20260725_163251_hands-feet-math.npz +3 -0
- data/mi/cap32_20260725_163251_hands-feet-math_raw.fif +3 -0
- docs/crosstalk_report.pdf +3 -0
- docs/crosstalk_report_zh.pdf +3 -0
- docs/hardware_acceptance.pdf +3 -0
- docs/mi_pilot_report.pdf +3 -0
- load_cap32.py +131 -0
- sessions.csv +6 -0
.gitattributes
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# Video files - compressed
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# Video files - compressed
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*.webm filter=lfs diff=lfs merge=lfs -text
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data/mi/cap32_20260722_135310_raw.fif filter=lfs diff=lfs merge=lfs -text
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data/mi/cap32_20260725_135441_mi_raw.fif filter=lfs diff=lfs merge=lfs -text
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data/mi/cap32_20260725_143756_hands-rest_raw.fif filter=lfs diff=lfs merge=lfs -text
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data/mi/cap32_20260725_163251_hands-feet-math_raw.fif filter=lfs diff=lfs merge=lfs -text
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docs/crosstalk_report.pdf filter=lfs diff=lfs merge=lfs -text
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docs/crosstalk_report_zh.pdf filter=lfs diff=lfs merge=lfs -text
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docs/hardware_acceptance.pdf filter=lfs diff=lfs merge=lfs -text
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docs/mi_pilot_report.pdf filter=lfs diff=lfs merge=lfs -text
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README.md
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| 1 |
+
---
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| 2 |
+
license: cc-by-4.0
|
| 3 |
+
language:
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| 4 |
+
- en
|
| 5 |
+
- zh
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| 6 |
+
tags:
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| 7 |
+
- eeg
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| 8 |
+
- motor-imagery
|
| 9 |
+
- brain-computer-interface
|
| 10 |
+
- bci
|
| 11 |
+
- dry-electrode
|
| 12 |
+
- ads1299
|
| 13 |
+
- biosignal
|
| 14 |
+
pretty_name: "cap32 — 32-channel dry-electrode motor imagery EEG"
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| 15 |
+
size_categories:
|
| 16 |
+
- n<1K
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| 17 |
+
task_categories:
|
| 18 |
+
- time-series-forecasting
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| 19 |
+
---
|
| 20 |
+
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| 21 |
+
# cap32 — 32-channel dry-electrode motor imagery EEG
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| 22 |
+
|
| 23 |
+
One subject, one low-cost 32-channel dry-electrode cap (TI ADS1299, 250 Hz, WiFi/UDP).
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| 24 |
+
Motor imagery and cognitive-task sessions, plus a set of calibrator recordings used to
|
| 25 |
+
characterise the amplifier.
|
| 26 |
+
|
| 27 |
+
Code, analysis and reports: **[github.com/twu3202/EEG_MI](https://github.com/twu3202/EEG_MI)**
|
| 28 |
+
|
| 29 |
+
> **Read §4 before analysing.** Two of the five MI sessions have defects that change what
|
| 30 |
+
> you can conclude from them, and they are not visible in the file itself.
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| 31 |
+
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| 32 |
+
---
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| 33 |
+
|
| 34 |
+
## 1. Quick start
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| 35 |
+
|
| 36 |
+
```python
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| 37 |
+
from load_cap32 import load, epochs, to_mne
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| 38 |
+
|
| 39 |
+
rec = load("data/mi/cap32_20260725_163251_hands-feet-math.npz")
|
| 40 |
+
X, y, t = epochs(rec, tmin=-1.0, tmax=4.0) # (75, 32, 1250) µV, relative to imagery onset
|
| 41 |
+
print(X.shape, set(y)) # {'hands', 'feet', 'math'}
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| 42 |
+
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| 43 |
+
raw = to_mne(rec) # or read the paired _raw.fif directly
|
| 44 |
+
raw.info["bads"] = ["F7"] # see §4.3
|
| 45 |
+
raw.filter(1., 40.).notch_filter(50.).set_eeg_reference("average")
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| 46 |
+
```
|
| 47 |
+
|
| 48 |
+
Pure MNE:
|
| 49 |
+
|
| 50 |
+
```python
|
| 51 |
+
import mne
|
| 52 |
+
raw = mne.io.read_raw_fif("data/mi/cap32_20260725_163251_hands-feet-math_raw.fif", preload=True)
|
| 53 |
+
events, event_id = mne.events_from_annotations(raw)
|
| 54 |
+
ep = mne.Epochs(raw, events, event_id, tmin=-1., tmax=4., baseline=(-1., 0.))
|
| 55 |
+
```
|
| 56 |
+
|
| 57 |
+
`python load_cap32.py` summarises every session. The loader needs only numpy (MNE optional).
|
| 58 |
+
|
| 59 |
+
## 2. Hardware and montage
|
| 60 |
+
|
| 61 |
+
| | |
|
| 62 |
+
|---|---|
|
| 63 |
+
| Amplifier | TI ADS1299, 24 bit, gain 24 |
|
| 64 |
+
| Scaling | `µV = counts × 0.02235`; full scale ±187500 µV |
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| 65 |
+
| Sampling | 250 Hz |
|
| 66 |
+
| Electrodes | dry, 32 channels |
|
| 67 |
+
| Reference | on-board floating reference (**not** re-referenced in these files) |
|
| 68 |
+
| Transport | WiFi UDP, 105-byte frames with a 1-byte sequence counter |
|
| 69 |
+
|
| 70 |
+
Channel order (the row order of `data`):
|
| 71 |
+
|
| 72 |
+
```
|
| 73 |
+
FP1 FP2 AF3 AF4 F3 F4 F7 F8 FC1 FC2 FC5 FC6 C3 C4 T7 T8
|
| 74 |
+
CP1 CP2 CP5 CP6 P3 P4 P7 P8 PO3 PO4 O1 O2 FZ CZ PZ OZ
|
| 75 |
+
```
|
| 76 |
+
|
| 77 |
+
**The signal is raw: unfiltered, not re-referenced, in µV.** The CAR and 1–40 Hz band-pass
|
| 78 |
+
shown in the acquisition GUI affect the display only and are never written to disk, so you
|
| 79 |
+
choose the preprocessing. Dry electrodes drift hard — high-pass at 0.5–1 Hz before looking
|
| 80 |
+
at anything.
|
| 81 |
+
|
| 82 |
+
## 3. File format
|
| 83 |
+
|
| 84 |
+
### `data/mi/*.npz` — the complete source
|
| 85 |
+
|
| 86 |
+
| key | dtype | shape | meaning |
|
| 87 |
+
|---|---|---|---|
|
| 88 |
+
| `data` | float32 | (32, N) | raw µV, unfiltered, pre-CAR |
|
| 89 |
+
| `fs` | float64 | () | 250.0 |
|
| 90 |
+
| `ch_names` | U3 | (32,) | the order above |
|
| 91 |
+
| `marker` | int32 | (N,) | **primary label track**; the task code at imagery onset, 0 elsewhere |
|
| 92 |
+
| `trigger` | int32 | (N,) | hardware trigger echo (redundant path; all-zero when the firmware does not echo) |
|
| 93 |
+
| `gap` | int8 | (N,) | 1 = this sample was linearly interpolated across a dropped UDP frame — **not EEG** |
|
| 94 |
+
| `trial_*` | | (n_trials,) | trial table: `index/code/name/onset/cue_onset/end`, in sample indices |
|
| 95 |
+
| `meta_json` | str | () | full snapshot of paradigm, timing, link statistics, acquisition settings |
|
| 96 |
+
| `format_version` | int64 | () | 2 (with trial table); the two earliest recordings lack this field |
|
| 97 |
+
|
| 98 |
+
Prefer the trial table over the label track — it also records where the cue ended and
|
| 99 |
+
imagery began.
|
| 100 |
+
|
| 101 |
+
### `data/mi/*_raw.fif` — MNE version
|
| 102 |
+
|
| 103 |
+
Same signal in volts, with the `standard_1020` montage and task names as annotations.
|
| 104 |
+
**It does not carry the `gap` track** — go back to the npz to exclude interpolated samples.
|
| 105 |
+
|
| 106 |
+
### `data/mi/*.json` — sidecar
|
| 107 |
+
|
| 108 |
+
A readable copy of `meta_json`, so paradigm and link stats can be inspected without opening
|
| 109 |
+
the npz.
|
| 110 |
+
|
| 111 |
+
### Task codes
|
| 112 |
+
|
| 113 |
+
| code | name | kind | | code | name | kind |
|
| 114 |
+
|---|---|---|---|---|---|---|
|
| 115 |
+
| 1 | rest | rest | | 10 | math | cognitive (serial subtraction by 7) |
|
| 116 |
+
| 2 | left | motor (left hand) | | 11 | words | cognitive (word association) |
|
| 117 |
+
| 3 | right | motor (right hand) | | 12 | song | cognitive (auditory imagery) |
|
| 118 |
+
| 4 | feet | motor (both feet) | | 13 | navigate | cognitive (spatial navigation) |
|
| 119 |
+
| 5 | tongue | motor (tongue) | | 14 | rotation | cognitive (mental rotation) |
|
| 120 |
+
| 6 | hands | motor (both hands) | | 15 | face | cognitive (familiar face) |
|
| 121 |
+
|
| 122 |
+
Only `left / right / hands / rest / feet / math` actually occur here.
|
| 123 |
+
|
| 124 |
+
### Trial timing
|
| 125 |
+
|
| 126 |
+
Four-phase state machine, 9.0 s per trial: `fixation 1.5 → cue 1.5 → imagery 4.0 → rest 2.0`.
|
| 127 |
+
`trial_onset` points at **imagery onset**; `trial_cue_onset` at cue onset. Imagery was
|
| 128 |
+
kinesthetic (imagine the *feeling* of moving, not watching yourself move).
|
| 129 |
+
|
| 130 |
+
## 4. Known issues — please read all of these
|
| 131 |
+
|
| 132 |
+
### 4.1 The hands-rest session has only 19 usable trials
|
| 133 |
+
|
| 134 |
+
`cap32_20260725_143756_hands-rest` lists 50 trials. **Only 19 are real.**
|
| 135 |
+
|
| 136 |
+
The acquisition socket had no timeout, so when the board stopped sending, `recvfrom` blocked
|
| 137 |
+
forever and the reader thread died silently. The paradigm kept running, and trials 20–50 were
|
| 138 |
+
all logged at the same frozen sample index (the end of the file). They are kept in the table
|
| 139 |
+
for provenance but carry no signal.
|
| 140 |
+
|
| 141 |
+
`valid_trials()` in the loader filters them; never use `len(trials)`. (A 2 s watchdog with
|
| 142 |
+
auto-reconnect fixed this afterwards; later sessions are unaffected.)
|
| 143 |
+
|
| 144 |
+
### 4.2 The left/right session has a visual confound
|
| 145 |
+
|
| 146 |
+
During `cap32_20260725_135441_mi`, a countdown digit on screen changed four times *during*
|
| 147 |
+
the imagery window. The result: **the only significant effect in the whole session was
|
| 148 |
+
occipital 13–30 Hz (+46 %, p = 0.023)** — that is the digit, not motor imagery. Central
|
| 149 |
+
channels showed nothing (p = 0.41).
|
| 150 |
+
|
| 151 |
+
Usable for studying visual/artifact responses; **not usable for evaluating MI decoding**.
|
| 152 |
+
Later sessions keep the countdown inside the cue phase and hold the imagery screen static.
|
| 153 |
+
|
| 154 |
+
### 4.3 F7 is an intermittent open circuit
|
| 155 |
+
|
| 156 |
+
F7 is flagged bad in all four sessions here. But it worked in a separate SSVEP test and has
|
| 157 |
+
gone green in impedance checks — so this is **a connector/lead fault, not scalp contact**.
|
| 158 |
+
|
| 159 |
+
Treat F7 as a bad channel (interpolate or drop), but not as a permanently dead electrode.
|
| 160 |
+
`cap32_20260722_135310` additionally has FC1 / O2 / OZ bad.
|
| 161 |
+
|
| 162 |
+
### 4.4 The subject was MI-naive
|
| 163 |
+
|
| 164 |
+
This affects interpretation: for an untrained subject, **the urge to suppress actual movement
|
| 165 |
+
plausibly dominated the motor imagery itself**. Both engage somatotopically organised
|
| 166 |
+
sensorimotor cortex, so this offline data **cannot separate** the two. Do not read any
|
| 167 |
+
hands-vs-feet effect here as pure motor imagery.
|
| 168 |
+
|
| 169 |
+
### 4.5 Interpolated samples
|
| 170 |
+
|
| 171 |
+
`gap == 1` marks linear interpolation, not measurement. Per session: hands-rest 84 samples
|
| 172 |
+
(0.198 %, 3 bursts, longest 40 frames = 160 ms); all others 0.
|
| 173 |
+
|
| 174 |
+
Interpolating rather than skipping is deliberate — silently dropping missing frames compresses
|
| 175 |
+
the time axis and shifts every downstream latency and frequency estimate. Exclude affected
|
| 176 |
+
trials when epoching (the loader does by default), or at least know that you did not.
|
| 177 |
+
|
| 178 |
+
## 5. Sessions
|
| 179 |
+
|
| 180 |
+
| file | duration | tasks | usable trials | bad channels | frame loss |
|
| 181 |
+
|---|---|---|---|---|---|
|
| 182 |
+
| `cap32_20260721_224212` | 1 s | — | — | — | — |
|
| 183 |
+
| `cap32_20260722_135310` | 31 s | — | — | F7, FC1, O2, OZ | — |
|
| 184 |
+
| `cap32_20260725_135441_mi` | 270 s | left / right | 30 (15+15) | F7 | 0.108 % |
|
| 185 |
+
| `cap32_20260725_143756_hands-rest` | 170 s | hands / rest | **19** of 50 | F7 | 0.308 % |
|
| 186 |
+
| `cap32_20260725_163251_hands-feet-math` | 675 s | hands / feet / math | 75 (25×3) | F7 | 0.045 % |
|
| 187 |
+
|
| 188 |
+
`sessions.csv` is the machine-readable version.
|
| 189 |
+
|
| 190 |
+
## 6. Calibrator recordings
|
| 191 |
+
|
| 192 |
+
`data/calibrator/` holds the amplifier characterisation: the cap off the head, an external
|
| 193 |
+
generator's ground tied to board GND and REF, and a 7 Hz sine driven into **one** channel
|
| 194 |
+
input with every other input left open.
|
| 195 |
+
|
| 196 |
+
| file | driven | rate | duration |
|
| 197 |
+
|---|---|---|---|
|
| 198 |
+
| `cal_7hz_180s.npz` | CH29 (FZ), VHDCI pin 31 | 250 Hz | 179 s |
|
| 199 |
+
| `cal_7hz_fp1_250sps_180s.npz` | CH1 (FP1), VHDCI pin 2 | 250 Hz | 180 s |
|
| 200 |
+
| `cal_7hz_fp1_1000sps_180s.npz` | CH1 (FP1), VHDCI pin 2 | 1000 Hz | 180 s |
|
| 201 |
+
| `cal_7hz_xt7hz_60s.npz`, `cal_7hz_probe11s.npz` | CH29 (FZ) | 250 Hz | 59 s, 11 s |
|
| 202 |
+
|
| 203 |
+
Two things to know before using them. First, an open ADS1299 input rails: 25–28 of the 32
|
| 204 |
+
channels sit pinned at +187500 µV and carry **no information at all**. Second, the tone is at
|
| 205 |
+
**7.0226 Hz, not 7.000** — fitting the nominal frequency over a long record averages a steady
|
| 206 |
+
24.5 µV tone down to 0.31 µV.
|
| 207 |
+
|
| 208 |
+
The terminated channel is a clean characterisation of the front end: 0.092 µV rms
|
| 209 |
+
(20–45 Hz), THD 0.22 %, 50 Hz at 0.0045 µV, and the two driven electrodes agree on amplitude
|
| 210 |
+
to 0.05 %. No crosstalk was detectable into any other channel; the measurement bounds it at
|
| 211 |
+
−24 dB, a bound set by the *open* inputs' noise rather than by the amplifier.
|
| 212 |
+
Full analysis in `docs/crosstalk_report.pdf`.
|
| 213 |
+
|
| 214 |
+
## 7. What has been found so far
|
| 215 |
+
|
| 216 |
+
From `docs/mi_pilot_report.pdf`:
|
| 217 |
+
|
| 218 |
+
- **left vs right is not decodable** (p = 0.41). A dry cap does not resolve C3 vs C4 finely
|
| 219 |
+
enough, and that session also carried the visual confound in §4.2.
|
| 220 |
+
- **hands vs rest is decodable**, AUC 0.83–0.87 (n = 19, breadth search over 115
|
| 221 |
+
channel × band × pipeline combinations). An earlier 0.90 in the report was best-of-5-bands
|
| 222 |
+
selection bias and is corrected there.
|
| 223 |
+
- **hands vs feet separates in mu (8–13 Hz) on 17 central+frontal channels**, AUC 0.704,
|
| 224 |
+
p = 0.040. Exploratory and selection-biased; turning it into a trustworthy result needs a
|
| 225 |
+
pre-registered re-recording.
|
| 226 |
+
- **Seven EEG foundation models all lost to the classical pipeline** (CSP / Riemannian
|
| 227 |
+
tangent space + LR, 0.790). The initially top-ranked BENDR (0.733) was an artifact of zero
|
| 228 |
+
padding — it scored 0.303 once the input was fixed. A representation-health gate (padding
|
| 229 |
+
fraction, channel coverage, centred variation ratio, effective rank) now runs before any
|
| 230 |
+
probe score is trusted.
|
| 231 |
+
|
| 232 |
+
## 8. Citation and license
|
| 233 |
+
|
| 234 |
+
CC BY 4.0. If you use this data, please link back to
|
| 235 |
+
[github.com/twu3202/EEG_MI](https://github.com/twu3202/EEG_MI).
|
| 236 |
+
|
| 237 |
+
```bibtex
|
| 238 |
+
@misc{cap32_mi_eeg_2026,
|
| 239 |
+
title = {cap32: 32-channel dry-electrode motor imagery EEG},
|
| 240 |
+
author = {Twu},
|
| 241 |
+
year = {2026},
|
| 242 |
+
url = {https://huggingface.co/datasets/Twu31/cap32-mi-eeg}
|
| 243 |
+
}
|
| 244 |
+
```
|
| 245 |
+
|
| 246 |
+
Recordings are from a single consenting adult subject (the author), released deliberately.
|
| 247 |
+
No clinical or identifying information is included.
|
data/calibrator/cal_7hz_180s.npz
ADDED
|
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data/calibrator/cal_7hz_fp1_1000sps_180s.npz
ADDED
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data/calibrator/cal_7hz_fp1_250sps_180s.npz
ADDED
|
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size 676218
|
data/calibrator/cal_7hz_probe11s.npz
ADDED
|
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| 1 |
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version https://git-lfs.github.com/spec/v1
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size 80581
|
data/calibrator/cal_7hz_xt7hz_60s.npz
ADDED
|
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| 1 |
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version https://git-lfs.github.com/spec/v1
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|
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size 400591
|
data/mi/cap32_20260721_224212.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
|
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|
|
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| 1 |
+
version https://git-lfs.github.com/spec/v1
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size 23646
|
data/mi/cap32_20260721_224212_raw.fif
ADDED
|
Binary file (28.5 kB). View file
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data/mi/cap32_20260722_135310.npz
ADDED
|
@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:72b41f79bd33bd1e2eed88a15befb2a5bbf4b891bd4a9e0676d43fdf6f199e15
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size 726089
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data/mi/cap32_20260722_135310_raw.fif
ADDED
|
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version https://git-lfs.github.com/spec/v1
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|
| 3 |
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size 998640
|
data/mi/cap32_20260725_135441_mi.json
ADDED
|
@@ -0,0 +1,114 @@
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|
|
|
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|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"paradigm": {
|
| 3 |
+
"kind": "motor-imagery",
|
| 4 |
+
"tasks": [
|
| 5 |
+
"left",
|
| 6 |
+
"right"
|
| 7 |
+
],
|
| 8 |
+
"reps": 15,
|
| 9 |
+
"imagery_mode": "kinesthetic",
|
| 10 |
+
"sequence": [
|
| 11 |
+
"left",
|
| 12 |
+
"right",
|
| 13 |
+
"left",
|
| 14 |
+
"left",
|
| 15 |
+
"right",
|
| 16 |
+
"right",
|
| 17 |
+
"left",
|
| 18 |
+
"left",
|
| 19 |
+
"right",
|
| 20 |
+
"left",
|
| 21 |
+
"left",
|
| 22 |
+
"right",
|
| 23 |
+
"right",
|
| 24 |
+
"right",
|
| 25 |
+
"left",
|
| 26 |
+
"left",
|
| 27 |
+
"left",
|
| 28 |
+
"right",
|
| 29 |
+
"left",
|
| 30 |
+
"right",
|
| 31 |
+
"right",
|
| 32 |
+
"right",
|
| 33 |
+
"right",
|
| 34 |
+
"right",
|
| 35 |
+
"right",
|
| 36 |
+
"right",
|
| 37 |
+
"left",
|
| 38 |
+
"left",
|
| 39 |
+
"left",
|
| 40 |
+
"left"
|
| 41 |
+
],
|
| 42 |
+
"timing": {
|
| 43 |
+
"fixation": 1.5,
|
| 44 |
+
"cue": 1.5,
|
| 45 |
+
"imagery": 4.0,
|
| 46 |
+
"rest": 2.0
|
| 47 |
+
}
|
| 48 |
+
},
|
| 49 |
+
"acquisition": {
|
| 50 |
+
"source": "udp",
|
| 51 |
+
"host": "192.168.4.1",
|
| 52 |
+
"port": 8086,
|
| 53 |
+
"sfreq": 250.0,
|
| 54 |
+
"car": true,
|
| 55 |
+
"deblink": false,
|
| 56 |
+
"display_filter": {
|
| 57 |
+
"low": "1",
|
| 58 |
+
"high": "40",
|
| 59 |
+
"notch50": true
|
| 60 |
+
},
|
| 61 |
+
"channels": [
|
| 62 |
+
"FP1",
|
| 63 |
+
"FP2",
|
| 64 |
+
"AF3",
|
| 65 |
+
"AF4",
|
| 66 |
+
"F3",
|
| 67 |
+
"F4",
|
| 68 |
+
"F7",
|
| 69 |
+
"F8",
|
| 70 |
+
"FC1",
|
| 71 |
+
"FC2",
|
| 72 |
+
"FC5",
|
| 73 |
+
"FC6",
|
| 74 |
+
"C3",
|
| 75 |
+
"C4",
|
| 76 |
+
"T7",
|
| 77 |
+
"T8",
|
| 78 |
+
"CP1",
|
| 79 |
+
"CP2",
|
| 80 |
+
"CP5",
|
| 81 |
+
"CP6",
|
| 82 |
+
"P3",
|
| 83 |
+
"P4",
|
| 84 |
+
"P7",
|
| 85 |
+
"P8",
|
| 86 |
+
"PO3",
|
| 87 |
+
"PO4",
|
| 88 |
+
"O1",
|
| 89 |
+
"O2",
|
| 90 |
+
"FZ",
|
| 91 |
+
"CZ",
|
| 92 |
+
"PZ",
|
| 93 |
+
"OZ"
|
| 94 |
+
],
|
| 95 |
+
"dead_channels": []
|
| 96 |
+
},
|
| 97 |
+
"link": {
|
| 98 |
+
"frames_received": 73760,
|
| 99 |
+
"frames_lost": 80,
|
| 100 |
+
"loss_pct": 0.108,
|
| 101 |
+
"samples_filled": 0
|
| 102 |
+
},
|
| 103 |
+
"n_filled_samples": 0,
|
| 104 |
+
"filled_pct": 0.0,
|
| 105 |
+
"format_version": 2,
|
| 106 |
+
"saved": "20260725_135441",
|
| 107 |
+
"n_samples": 67459,
|
| 108 |
+
"n_channels": 32,
|
| 109 |
+
"sfreq": 250.0,
|
| 110 |
+
"n_trials": 30,
|
| 111 |
+
"duration_s": 269.84,
|
| 112 |
+
"units": "microvolts",
|
| 113 |
+
"notes": "RAW µV, pre-CAR, unfiltered"
|
| 114 |
+
}
|
data/mi/cap32_20260725_135441_mi.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
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|
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|
| 1 |
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version https://git-lfs.github.com/spec/v1
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oid sha256:800059aefa9c2ae07f7284d5098045a2af46cf2fce7ef7328bfb6f4f0a5f8562
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+
size 5699057
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data/mi/cap32_20260725_135441_mi_raw.fif
ADDED
|
@@ -0,0 +1,3 @@
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+
version https://git-lfs.github.com/spec/v1
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size 8644932
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data/mi/cap32_20260725_143756_hands-rest.json
ADDED
|
@@ -0,0 +1,134 @@
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
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|
|
|
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|
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|
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|
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|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"paradigm": {
|
| 3 |
+
"kind": "motor-imagery",
|
| 4 |
+
"tasks": [
|
| 5 |
+
"hands",
|
| 6 |
+
"rest"
|
| 7 |
+
],
|
| 8 |
+
"reps": 25,
|
| 9 |
+
"imagery_mode": "kinesthetic",
|
| 10 |
+
"sequence": [
|
| 11 |
+
"hands",
|
| 12 |
+
"rest",
|
| 13 |
+
"rest",
|
| 14 |
+
"rest",
|
| 15 |
+
"hands",
|
| 16 |
+
"hands",
|
| 17 |
+
"hands",
|
| 18 |
+
"rest",
|
| 19 |
+
"rest",
|
| 20 |
+
"rest",
|
| 21 |
+
"hands",
|
| 22 |
+
"hands",
|
| 23 |
+
"hands",
|
| 24 |
+
"hands",
|
| 25 |
+
"rest",
|
| 26 |
+
"rest",
|
| 27 |
+
"rest",
|
| 28 |
+
"hands",
|
| 29 |
+
"hands",
|
| 30 |
+
"hands",
|
| 31 |
+
"rest",
|
| 32 |
+
"hands",
|
| 33 |
+
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|
| 34 |
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|
| 35 |
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|
| 36 |
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| 37 |
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| 38 |
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| 39 |
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| 40 |
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| 41 |
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| 42 |
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| 43 |
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| 44 |
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| 45 |
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| 46 |
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| 47 |
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| 48 |
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| 49 |
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| 50 |
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| 51 |
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| 52 |
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| 53 |
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| 54 |
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| 55 |
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| 56 |
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| 57 |
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| 58 |
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| 59 |
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| 60 |
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| 80 |
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| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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| 86 |
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|
| 87 |
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|
| 88 |
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| 89 |
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|
| 90 |
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| 91 |
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| 92 |
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| 93 |
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| 94 |
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|
| 95 |
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| 96 |
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| 97 |
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| 98 |
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| 99 |
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| 100 |
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| 101 |
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|
| 102 |
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|
| 103 |
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| 104 |
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|
| 105 |
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| 106 |
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| 107 |
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| 108 |
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|
| 109 |
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|
| 111 |
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| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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| 117 |
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|
| 118 |
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|
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|
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|
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|
| 122 |
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|
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|
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|
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|
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|
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|
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|
data/mi/cap32_20260725_143756_hands-rest.npz
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data/mi/cap32_20260725_143756_hands-rest_raw.fif
ADDED
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version https://git-lfs.github.com/spec/v1
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size 5450964
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data/mi/cap32_20260725_163251_hands-feet-math.json
ADDED
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@@ -0,0 +1,161 @@
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| 28 |
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| 29 |
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| 30 |
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| 31 |
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| 32 |
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|
| 33 |
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| 34 |
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| 35 |
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| 36 |
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| 37 |
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|
| 38 |
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| 39 |
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|
| 40 |
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| 41 |
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|
| 42 |
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| 43 |
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| 44 |
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|
| 45 |
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| 46 |
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| 47 |
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| 48 |
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|
| 49 |
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| 50 |
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| 51 |
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| 52 |
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| 55 |
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| 59 |
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| 60 |
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| 61 |
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| 62 |
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| 63 |
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| 64 |
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| 65 |
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| 66 |
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| 68 |
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| 69 |
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|
| 70 |
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| 71 |
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| 72 |
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| 73 |
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| 75 |
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| 77 |
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| 142 |
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|
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|
| 160 |
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|
| 161 |
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}
|
data/mi/cap32_20260725_163251_hands-feet-math.npz
ADDED
|
@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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size 14444714
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data/mi/cap32_20260725_163251_hands-feet-math_raw.fif
ADDED
|
@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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docs/crosstalk_report.pdf
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
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version https://git-lfs.github.com/spec/v1
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docs/crosstalk_report_zh.pdf
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
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version https://git-lfs.github.com/spec/v1
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| 3 |
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docs/hardware_acceptance.pdf
ADDED
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@@ -0,0 +1,3 @@
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| 1 |
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version https://git-lfs.github.com/spec/v1
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| 3 |
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size 881721
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docs/mi_pilot_report.pdf
ADDED
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@@ -0,0 +1,3 @@
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| 1 |
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version https://git-lfs.github.com/spec/v1
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load_cap32.py
ADDED
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@@ -0,0 +1,131 @@
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|
| 1 |
+
#!/usr/bin/env python
|
| 2 |
+
"""Standalone loader for the cap32 recordings — numpy only, no project code needed.
|
| 3 |
+
|
| 4 |
+
Everything you need is in the .npz: raw µV, the per-sample label track, the trial table,
|
| 5 |
+
and the gap track that says which samples were reconstructed after a UDP drop. The paired
|
| 6 |
+
_raw.fif is the same signal in MNE's format with the task labels as annotations, for people
|
| 7 |
+
who would rather start from `mne.io.read_raw_fif`.
|
| 8 |
+
|
| 9 |
+
python load_cap32.py # summarise every session
|
| 10 |
+
python load_cap32.py data/mi/cap32_20260725_163251_hands-feet-math.npz --epochs
|
| 11 |
+
"""
|
| 12 |
+
from __future__ import annotations
|
| 13 |
+
|
| 14 |
+
import argparse
|
| 15 |
+
import json
|
| 16 |
+
from pathlib import Path
|
| 17 |
+
|
| 18 |
+
import numpy as np
|
| 19 |
+
|
| 20 |
+
HERE = Path(__file__).resolve().parent
|
| 21 |
+
|
| 22 |
+
# The paradigm writes these small integers into the `marker` track at imagery onset.
|
| 23 |
+
CODE_TO_LABEL = {1: "rest", 2: "left", 3: "right", 4: "feet", 5: "tongue", 6: "hands",
|
| 24 |
+
10: "math", 11: "words", 12: "song", 13: "navigate", 14: "rotation",
|
| 25 |
+
15: "face"}
|
| 26 |
+
|
| 27 |
+
|
| 28 |
+
def load(path):
|
| 29 |
+
"""-> dict with data (n_ch, N) µV, fs, ch_names, marker/trigger/gap tracks, trials, meta."""
|
| 30 |
+
d = np.load(path, allow_pickle=True)
|
| 31 |
+
out = {k: d[k] for k in d.files if k != "meta_json"}
|
| 32 |
+
out["fs"] = float(d["fs"])
|
| 33 |
+
out["ch_names"] = [str(c) for c in d["ch_names"]]
|
| 34 |
+
out["meta"] = json.loads(str(d["meta_json"])) if "meta_json" in d.files else {}
|
| 35 |
+
if "trial_name" in d.files:
|
| 36 |
+
out["trials"] = [
|
| 37 |
+
dict(i=int(d["trial_index"][k]), name=str(d["trial_name"][k]),
|
| 38 |
+
code=int(d["trial_code"][k]), onset=int(d["trial_onset"][k]),
|
| 39 |
+
cue_onset=int(d["trial_cue_onset"][k]), end=int(d["trial_end"][k]))
|
| 40 |
+
for k in range(len(d["trial_name"]))
|
| 41 |
+
]
|
| 42 |
+
return out
|
| 43 |
+
|
| 44 |
+
|
| 45 |
+
def valid_trials(rec):
|
| 46 |
+
"""Trials whose imagery window actually exists in the data.
|
| 47 |
+
|
| 48 |
+
The 2026-07-25 hands-rest session hit a receiver stall: the acquisition thread blocked
|
| 49 |
+
on a socket with no timeout, so trials 20-50 were all logged at the same frozen sample
|
| 50 |
+
index (the end of the file). They are kept in the table for provenance but carry no
|
| 51 |
+
signal — filter with this, never with len(trials)."""
|
| 52 |
+
n = rec["data"].shape[1]
|
| 53 |
+
ts = rec.get("trials", [])
|
| 54 |
+
return [t for i, t in enumerate(ts)
|
| 55 |
+
if t["onset"] < n and (i == 0 or t["onset"] > ts[i - 1]["onset"])]
|
| 56 |
+
|
| 57 |
+
|
| 58 |
+
def epochs(rec, tmin=-1.0, tmax=4.0, drop_filled=True):
|
| 59 |
+
"""-> X (n_trials, n_ch, n_times) µV, y (labels), times. Cut around imagery onset.
|
| 60 |
+
|
| 61 |
+
`drop_filled` removes trials that overlap samples reconstructed across a UDP drop —
|
| 62 |
+
those samples are linear interpolation, not EEG, and they are flagged in rec['gap']."""
|
| 63 |
+
fs, X, y = rec["fs"], [], []
|
| 64 |
+
lo, hi = int(round(tmin * fs)), int(round(tmax * fs))
|
| 65 |
+
gap = rec.get("gap")
|
| 66 |
+
for t in valid_trials(rec):
|
| 67 |
+
a, b = t["onset"] + lo, t["onset"] + hi
|
| 68 |
+
if a < 0 or b > rec["data"].shape[1]:
|
| 69 |
+
continue
|
| 70 |
+
if drop_filled and gap is not None and gap[a:b].any():
|
| 71 |
+
continue
|
| 72 |
+
X.append(rec["data"][:, a:b])
|
| 73 |
+
y.append(t["name"])
|
| 74 |
+
return np.asarray(X), np.asarray(y), np.arange(lo, hi) / fs
|
| 75 |
+
|
| 76 |
+
|
| 77 |
+
def to_mne(rec):
|
| 78 |
+
"""-> mne.io.RawArray with the standard_1020 montage and task annotations."""
|
| 79 |
+
import mne
|
| 80 |
+
info = mne.create_info(rec["ch_names"], rec["fs"], "eeg")
|
| 81 |
+
raw = mne.io.RawArray(rec["data"] * 1e-6, info, verbose="ERROR") # MNE wants volts
|
| 82 |
+
raw.set_montage(mne.channels.make_standard_montage("standard_1020"),
|
| 83 |
+
match_case=False, on_missing="ignore")
|
| 84 |
+
ts = valid_trials(rec)
|
| 85 |
+
if ts:
|
| 86 |
+
raw.set_annotations(mne.Annotations(
|
| 87 |
+
onset=[t["onset"] / rec["fs"] for t in ts],
|
| 88 |
+
duration=[(t["end"] - t["onset"]) / rec["fs"] for t in ts],
|
| 89 |
+
description=[t["name"] for t in ts]))
|
| 90 |
+
return raw
|
| 91 |
+
|
| 92 |
+
|
| 93 |
+
def summarise(path):
|
| 94 |
+
rec = load(path)
|
| 95 |
+
n = rec["data"].shape[1]
|
| 96 |
+
tr, vt = rec.get("trials", []), valid_trials(rec)
|
| 97 |
+
gap = rec.get("gap")
|
| 98 |
+
print(f"\n{path.name}")
|
| 99 |
+
print(f" {rec['data'].shape[0]} ch × {n} samp = {n/rec['fs']:.0f} s @ {rec['fs']:.0f} Hz, µV")
|
| 100 |
+
if tr:
|
| 101 |
+
cnt = {}
|
| 102 |
+
for t in vt:
|
| 103 |
+
cnt[t["name"]] = cnt.get(t["name"], 0) + 1
|
| 104 |
+
print(f" trials: {len(vt)} usable of {len(tr)} logged {cnt}")
|
| 105 |
+
if len(vt) < len(tr):
|
| 106 |
+
print(f" ⚠ {len(tr)-len(vt)} trial(s) logged after the stream stalled — no signal")
|
| 107 |
+
if gap is not None and gap.any():
|
| 108 |
+
print(f" gap-filled: {int(gap.sum())} samp ({100*gap.mean():.3f} %) — interpolated, not EEG")
|
| 109 |
+
link = rec["meta"].get("link")
|
| 110 |
+
if link:
|
| 111 |
+
print(f" link: {link.get('loss_pct', 0):.3f} % frame loss")
|
| 112 |
+
|
| 113 |
+
|
| 114 |
+
def main():
|
| 115 |
+
ap = argparse.ArgumentParser(description=__doc__,
|
| 116 |
+
formatter_class=argparse.RawDescriptionHelpFormatter)
|
| 117 |
+
ap.add_argument("path", nargs="?", help="a .npz (default: summarise all)")
|
| 118 |
+
ap.add_argument("--epochs", action="store_true", help="also cut and report epochs")
|
| 119 |
+
a = ap.parse_args()
|
| 120 |
+
paths = [Path(a.path)] if a.path else sorted((HERE / "data" / "mi").glob("*.npz"))
|
| 121 |
+
for p in paths:
|
| 122 |
+
summarise(p)
|
| 123 |
+
if a.epochs:
|
| 124 |
+
X, y, t = epochs(load(p))
|
| 125 |
+
if len(X):
|
| 126 |
+
print(f" epochs: X {X.shape} y {dict(zip(*np.unique(y, return_counts=True)))}"
|
| 127 |
+
f" t [{t[0]:.1f}, {t[-1]:.1f}] s")
|
| 128 |
+
|
| 129 |
+
|
| 130 |
+
if __name__ == "__main__":
|
| 131 |
+
main()
|
sessions.csv
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
file,duration_s,n_samples,sfreq,n_channels,tasks,trials_logged,trials_usable,per_class,gap_samples,frame_loss_pct,format_version
|
| 2 |
+
cap32_20260721_224212,0.8,192,250,32,,0,0,,0,,1
|
| 3 |
+
cap32_20260722_135310,31.0,7757,250,32,,0,0,,0,,1
|
| 4 |
+
cap32_20260725_135441_mi,269.8,67459,250,32,left+right,30,30,left=15;right=15,0,0.108,2
|
| 5 |
+
cap32_20260725_143756_hands-rest,170.1,42520,250,32,hands+rest,50,19,hands=10;rest=9,84,0.308,2
|
| 6 |
+
cap32_20260725_163251_hands-feet-math,675.1,168776,250,32,hands+feet+math,75,75,feet=25;hands=25;math=25,0,0.045,2
|