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| #Brian Refsdal's parallel_map, from astropython.org | |
| #Not sure what license this is released under, but until I know better: | |
| # | |
| #Copyright (c) 2010, Brian Refsdal | |
| #All rights reserved. | |
| # | |
| #Redistribution and use in source and binary forms, with or without | |
| #modification, are permitted provided that the following conditions are | |
| #met: | |
| # | |
| #1. Redistributions of source code must retain the above copyright | |
| #notice, this list of conditions and the following disclaimer. | |
| # | |
| #2. Redistributions in binary form must reproduce the above copyright | |
| #notice, this list of conditions and the following disclaimer in the | |
| #documentation and/or other materials provided with the distribution. | |
| # | |
| #3. The name of the author may not be used to endorse or promote | |
| #products derived from this software without specific prior written | |
| #permission. | |
| # | |
| #THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS | |
| #"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT | |
| #LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR | |
| #A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT | |
| #HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, | |
| #SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT | |
| #LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, | |
| #DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY | |
| #THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT | |
| #(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE | |
| #OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. | |
| from __future__ import print_function | |
| import numpy | |
| _multi=False | |
| _ncpus=1 | |
| try: | |
| # May raise ImportError | |
| import multiprocessing | |
| _multi=True | |
| # May raise NotImplementedError | |
| _ncpus = multiprocessing.cpu_count() | |
| except: | |
| pass | |
| __all__ = ('parallel_map',) | |
| def worker(f, ii, chunk, out_q, err_q, lock): | |
| """ | |
| A worker function that maps an input function over a | |
| slice of the input iterable. | |
| :param f : callable function that accepts argument from iterable | |
| :param ii : process ID | |
| :param chunk: slice of input iterable | |
| :param out_q: thread-safe output queue | |
| :param err_q: thread-safe queue to populate on exception | |
| :param lock : thread-safe lock to protect a resource | |
| ( useful in extending parallel_map() ) | |
| """ | |
| vals = [] | |
| # iterate over slice | |
| for val in chunk: | |
| try: | |
| result = f(val) | |
| except Exception as e: | |
| err_q.put(e) | |
| return | |
| vals.append(result) | |
| # output the result and task ID to output queue | |
| out_q.put( (ii, vals) ) | |
| def run_tasks(procs, err_q, out_q, num): | |
| """ | |
| A function that executes populated processes and processes | |
| the resultant array. Checks error queue for any exceptions. | |
| :param procs: list of Process objects | |
| :param out_q: thread-safe output queue | |
| :param err_q: thread-safe queue to populate on exception | |
| :param num : length of resultant array | |
| """ | |
| # function to terminate processes that are still running. | |
| die = (lambda vals : [val.terminate() for val in vals | |
| if val.exitcode is None]) | |
| try: | |
| for proc in procs: | |
| proc.start() | |
| for proc in procs: | |
| proc.join() | |
| except Exception as e: | |
| # kill all slave processes on ctrl-C | |
| try: | |
| die(procs) | |
| finally: | |
| raise e | |
| if not err_q.empty(): | |
| # kill all on any exception from any one slave | |
| try: | |
| die(procs) | |
| finally: | |
| raise err_q.get() | |
| # Processes finish in arbitrary order. Process IDs double | |
| # as index in the resultant array. | |
| results=[None]*num; | |
| while not out_q.empty(): | |
| idx, result = out_q.get() | |
| results[idx] = result | |
| # Remove extra dimension added by array_split | |
| return list(numpy.concatenate(results)) | |
| def parallel_map(function, sequence, numcores=None): | |
| """ | |
| A parallelized version of the native Python map function that | |
| utilizes the Python multiprocessing module to divide and | |
| conquer sequence. | |
| parallel_map does not yet support multiple argument sequences. | |
| :param function: callable function that accepts argument from iterable | |
| :param sequence: iterable sequence | |
| :param numcores: number of cores to use | |
| """ | |
| if not callable(function): | |
| raise TypeError("input function '%s' is not callable" % | |
| repr(function)) | |
| if not numpy.iterable(sequence): | |
| raise TypeError("input '%s' is not iterable" % | |
| repr(sequence)) | |
| size = len(sequence) | |
| if not _multi or size == 1: | |
| return map(function, sequence) | |
| if numcores is None: | |
| numcores = _ncpus | |
| # Returns a started SyncManager object which can be used for sharing | |
| # objects between processes. The returned manager object corresponds | |
| # to a spawned child process and has methods which will create shared | |
| # objects and return corresponding proxies. | |
| manager = multiprocessing.Manager() | |
| # Create FIFO queue and lock shared objects and return proxies to them. | |
| # The managers handles a server process that manages shared objects that | |
| # each slave process has access to. Bottom line -- thread-safe. | |
| out_q = manager.Queue() | |
| err_q = manager.Queue() | |
| lock = manager.Lock() | |
| # if sequence is less than numcores, only use len sequence number of | |
| # processes | |
| if size < numcores: | |
| numcores = size | |
| # group sequence into numcores-worth of chunks | |
| sequence = numpy.array_split(sequence, numcores) | |
| procs = [multiprocessing.Process(target=worker, | |
| args=(function, ii, chunk, out_q, err_q, lock)) | |
| for ii, chunk in enumerate(sequence)] | |
| return run_tasks(procs, err_q, out_q, numcores) | |
| if __name__ == "__main__": | |
| """ | |
| Unit test of parallel_map() | |
| Create an arbitrary length list of references to a single | |
| matrix containing random floats and compute the eigenvals | |
| in serial and parallel. Compare the results and timings. | |
| """ | |
| import time | |
| numtasks = 5 | |
| #size = (1024,1024) | |
| size = (512,512) | |
| vals = numpy.random.rand(*size) | |
| f = numpy.linalg.eigvals | |
| iterable = [vals]*numtasks | |
| print ('Running numpy.linalg.eigvals %iX on matrix size [%i,%i]' % | |
| (numtasks,size[0],size[1])) | |
| tt = time.time() | |
| presult = parallel_map(f, iterable) | |
| print('parallel map in %g secs' % (time.time()-tt)) | |
| tt = time.time() | |
| result = map(f, iterable) | |
| print('serial map in %g secs' % (time.time()-tt)) | |
| assert (numpy.asarray(result) == numpy.asarray(presult)).all() | |