Datasets:

Modalities:
Image
Video
Languages:
English
Size:
< 1K
ArXiv:
Libraries:
Datasets
FiftyOne
License:
harpreetsahota commited on
Commit
2efb5a6
·
verified ·
1 Parent(s): 74991b5

Upload 2 files

Browse files
Files changed (2) hide show
  1. import_transphy3d.py +415 -0
  2. reconstruct_scenes.py +436 -0
import_transphy3d.py ADDED
@@ -0,0 +1,415 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/usr/bin/env python3
2
+ """Extract TransPhy3D sequences and import them into FiftyOne.
3
+
4
+ Pipeline
5
+ --------
6
+ 1. Read WebDataset tar files from the TransPhy3D test split.
7
+ 2. Extract per-frame assets to ``data/processed/{sequence_id}/``.
8
+ 3. Assemble RGB frames into ``rgb.mp4`` with ffmpeg.
9
+ 4. Create FiftyOne video samples with frame-level annotations.
10
+
11
+ Processed layout per sequence::
12
+
13
+ rgb.mp4
14
+ depth/{frame_id:08d}.png
15
+ normal/{frame_id:08d}.png
16
+ depth_json/{frame_id:08d}.json
17
+ metadata/{frame_id:08d}.json
18
+
19
+ FiftyOne stores depth and normals as :class:`fiftyone.core.labels.Heatmap`
20
+ fields that reference PNG files on disk via absolute ``map_path`` values.
21
+
22
+ Typical usage::
23
+
24
+ conda activate fiftyone
25
+ python import_transphy3d.py --overwrite
26
+
27
+ For grouped video + 3D reconstruction import, run :mod:`reconstruct_scenes`
28
+ after this script has produced processed assets.
29
+
30
+ Depth decoding (also used by reconstruction)::
31
+
32
+ depth_metric = png_uint16 / 65535 * max_depth
33
+ """
34
+
35
+ from __future__ import annotations
36
+
37
+ import argparse
38
+ import json
39
+ import re
40
+ import shutil
41
+ import subprocess
42
+ import tarfile
43
+ from collections import defaultdict
44
+ from pathlib import Path
45
+
46
+ import fiftyone as fo
47
+ from tqdm import tqdm
48
+
49
+ MEMBER_RE = re.compile(
50
+ r"^(.+?)_(\d+)\.(depth\.json|depth\.png|image\.png|metadata\.json|normal\.png)$"
51
+ )
52
+
53
+
54
+ def parse_member(name: str) -> tuple[str, int, str] | None:
55
+ """Parse a tar member name into ``(sequence_id, frame_id, extension)``."""
56
+ match = MEMBER_RE.match(name)
57
+ if not match:
58
+ return None
59
+ prefix, frame_id, ext = match.groups()
60
+ return prefix, int(frame_id), ext
61
+
62
+
63
+ def scene_type(sequence_id: str) -> str:
64
+ """Map a sequence id to a coarse scene category label."""
65
+ if "table_with_robot" in sequence_id:
66
+ return "table_with_robot"
67
+ return "materials"
68
+
69
+
70
+ def sequence_id_from_tar(tar_path: Path) -> str:
71
+ """Infer the sequence id prefix from the first valid tar member name."""
72
+ with tarfile.open(tar_path) as tf:
73
+ for name in tf.getnames():
74
+ parsed = parse_member(name)
75
+ if parsed is not None:
76
+ return parsed[0]
77
+ raise ValueError(f"Could not determine sequence id for {tar_path}")
78
+
79
+
80
+ def tar_sequence_map(tar_dir: Path) -> dict[str, Path]:
81
+ """Map sequence ids to their source tar paths."""
82
+ mapping: dict[str, Path] = {}
83
+ for tar_path in sorted(tar_dir.glob("*.tar")):
84
+ mapping[sequence_id_from_tar(tar_path)] = tar_path
85
+ return mapping
86
+
87
+
88
+ def load_tar_frames(tar_path: Path) -> dict[int, dict[str, bytes]]:
89
+ """Load all frame payloads from one WebDataset tar file."""
90
+ frames: dict[int, dict[str, bytes]] = defaultdict(dict)
91
+ with tarfile.open(tar_path) as tf:
92
+ for member in tf.getmembers():
93
+ parsed = parse_member(member.name)
94
+ if parsed is None:
95
+ continue
96
+ _, frame_id, ext = parsed
97
+ frames[frame_id][ext] = tf.extractfile(member).read()
98
+ return dict(frames)
99
+
100
+
101
+ def frame_asset_paths(seq_dir: Path, frame_id: int) -> dict[str, Path]:
102
+ """Return absolute paths for one frame's extracted on-disk assets."""
103
+ stem = f"{frame_id:08d}"
104
+ return {
105
+ "depth": (seq_dir / "depth" / f"{stem}.png").resolve(),
106
+ "normal": (seq_dir / "normal" / f"{stem}.png").resolve(),
107
+ "depth_json": (seq_dir / "depth_json" / f"{stem}.json").resolve(),
108
+ "metadata_json": (seq_dir / "metadata" / f"{stem}.json").resolve(),
109
+ }
110
+
111
+
112
+ def load_frame_calibration(paths: dict[str, Path]) -> tuple[float, dict]:
113
+ """Load ``max_depth`` and parsed ``metadata.json`` for one frame."""
114
+ depth_info = json.loads(paths["depth_json"].read_text())
115
+ metadata = json.loads(paths["metadata_json"].read_text())
116
+ return depth_info["max_depth"], metadata
117
+
118
+
119
+ def calibration_frame_fields(
120
+ frame_id: int,
121
+ sequence_id: str,
122
+ max_depth: float,
123
+ metadata: dict,
124
+ ) -> dict:
125
+ """Build parsed calibration fields for one video frame."""
126
+ cameras = metadata["camera_matrices"]
127
+ return {
128
+ "frame_id": metadata.get("frame_id", frame_id),
129
+ "sequence_id": metadata.get("sequence_id", sequence_id),
130
+ "max_depth": max_depth,
131
+ "camera_extrinsics": cameras["extrinsics"],
132
+ "camera_intrinsics": cameras["intrinsics"],
133
+ }
134
+
135
+
136
+ def frame_field_update(
137
+ frame_id: int,
138
+ sequence_id: str,
139
+ paths: dict[str, Path],
140
+ max_depth: float,
141
+ metadata: dict,
142
+ ) -> dict:
143
+ """Build the full FiftyOne frame-field payload for one video frame."""
144
+ return {
145
+ **calibration_frame_fields(frame_id, sequence_id, max_depth, metadata),
146
+ "depth_map": fo.Heatmap(map_path=str(paths["depth"]), range=[0, 65535]),
147
+ "normal_map": fo.Heatmap(map_path=str(paths["normal"])),
148
+ }
149
+
150
+
151
+ def sorted_frame_ids(seq_dir: Path) -> list[int]:
152
+ """Return sorted frame ids inferred from extracted depth PNG filenames."""
153
+ return sorted(int(path.stem) for path in (seq_dir / "depth").glob("*.png"))
154
+
155
+
156
+ def write_rgb_video(frames: dict[int, dict[str, bytes]], output_path: Path, fps: int) -> None:
157
+ """Assemble extracted ``image.png`` frames into an H.264 ``rgb.mp4`` file."""
158
+ output_path.parent.mkdir(parents=True, exist_ok=True)
159
+ frame_ids = sorted(frames)
160
+ temp_dir = output_path.parent / "_rgb_frames_tmp"
161
+ if temp_dir.exists():
162
+ shutil.rmtree(temp_dir)
163
+ temp_dir.mkdir(parents=True, exist_ok=True)
164
+
165
+ try:
166
+ for idx, frame_id in enumerate(frame_ids):
167
+ (temp_dir / f"frame_{idx:06d}.png").write_bytes(frames[frame_id]["image.png"])
168
+
169
+ subprocess.run(
170
+ [
171
+ "ffmpeg",
172
+ "-y",
173
+ "-hide_banner",
174
+ "-loglevel",
175
+ "error",
176
+ "-framerate",
177
+ str(fps),
178
+ "-i",
179
+ str(temp_dir / "frame_%06d.png"),
180
+ "-c:v",
181
+ "libx264",
182
+ "-pix_fmt",
183
+ "yuv420p",
184
+ str(output_path),
185
+ ],
186
+ check=True,
187
+ )
188
+ finally:
189
+ shutil.rmtree(temp_dir, ignore_errors=True)
190
+
191
+
192
+ def write_frame_assets(
193
+ frames: dict[int, dict[str, bytes]],
194
+ seq_dir: Path,
195
+ *,
196
+ write_png: bool = True,
197
+ write_json: bool = True,
198
+ ) -> None:
199
+ """Write selected per-frame assets for one sequence to disk."""
200
+ subdirs = []
201
+ if write_png:
202
+ subdirs.extend(("depth", "normal"))
203
+ if write_json:
204
+ subdirs.extend(("depth_json", "metadata"))
205
+ for name in subdirs:
206
+ (seq_dir / name).mkdir(parents=True, exist_ok=True)
207
+
208
+ for frame_id in sorted(frames):
209
+ frame = frames[frame_id]
210
+ paths = frame_asset_paths(seq_dir, frame_id)
211
+ if write_png:
212
+ paths["depth"].write_bytes(frame["depth.png"])
213
+ paths["normal"].write_bytes(frame["normal.png"])
214
+ if write_json:
215
+ paths["depth_json"].write_bytes(frame["depth.json"])
216
+ paths["metadata_json"].write_bytes(frame["metadata.json"])
217
+
218
+
219
+ def build_video_sample_from_disk(
220
+ sequence_id: str,
221
+ processed_root: Path,
222
+ source_tar: str,
223
+ ) -> fo.Sample:
224
+ """Build a FiftyOne video sample from already extracted processed assets."""
225
+ seq_dir = processed_root / sequence_id
226
+ video_path = (seq_dir / "rgb.mp4").resolve()
227
+ if not video_path.exists():
228
+ raise FileNotFoundError(f"Missing RGB video for sequence {sequence_id}: {video_path}")
229
+
230
+ frame_ids = sorted_frame_ids(seq_dir)
231
+ if not frame_ids:
232
+ raise ValueError(f"No extracted depth frames found for sequence {sequence_id}")
233
+
234
+ sample = fo.Sample(filepath=str(video_path))
235
+ sample["sequence_id"] = sequence_id
236
+ sample["source_tar"] = source_tar
237
+ sample["frame_count"] = len(frame_ids)
238
+ sample["scene_type"] = scene_type(sequence_id)
239
+ sample["tags"] = ["test"]
240
+
241
+ for frame_idx, frame_id in enumerate(frame_ids, start=1):
242
+ paths = frame_asset_paths(seq_dir, frame_id)
243
+ max_depth, metadata = load_frame_calibration(paths)
244
+ sample.frames[frame_idx] = fo.Frame(
245
+ **frame_field_update(frame_id, sequence_id, paths, max_depth, metadata)
246
+ )
247
+
248
+ return sample
249
+
250
+
251
+ def build_video_sample(
252
+ sequence_id: str,
253
+ tar_path: Path,
254
+ processed_root: Path,
255
+ fps: int,
256
+ ) -> fo.Sample:
257
+ """Extract one tar, write processed assets, and build a FiftyOne video sample."""
258
+ frames = load_tar_frames(tar_path)
259
+ if not frames:
260
+ raise ValueError(f"No frames found in {tar_path}")
261
+
262
+ seq_dir = processed_root / sequence_id
263
+ write_frame_assets(frames, seq_dir)
264
+ write_rgb_video(frames, seq_dir / "rgb.mp4", fps=fps)
265
+ return build_video_sample_from_disk(sequence_id, processed_root, tar_path.name)
266
+
267
+
268
+ def backfill_json_files(tar_dir: Path, processed_root: Path) -> None:
269
+ """Write ``depth_json/`` and ``metadata/`` files for every tar in ``tar_dir``."""
270
+ for sequence_id, tar_path in tqdm(tar_sequence_map(tar_dir).items(), desc="Writing JSON files"):
271
+ write_frame_assets(
272
+ load_tar_frames(tar_path),
273
+ processed_root / sequence_id,
274
+ write_png=False,
275
+ )
276
+
277
+
278
+ def refresh_calibration_fields(
279
+ tar_dir: Path,
280
+ processed_root: Path,
281
+ dataset_name: str,
282
+ ) -> fo.Dataset:
283
+ """Refresh on-disk JSON files and update parsed calibration frame fields."""
284
+ backfill_json_files(tar_dir, processed_root)
285
+
286
+ dataset = fo.load_dataset(dataset_name)
287
+ for sample in tqdm(dataset, desc="Updating calibration fields"):
288
+ seq_dir = processed_root / sample["sequence_id"]
289
+ frame_updates = {}
290
+ for frame_idx, frame_id in enumerate(sorted_frame_ids(seq_dir), start=1):
291
+ paths = frame_asset_paths(seq_dir, frame_id)
292
+ max_depth, metadata = load_frame_calibration(paths)
293
+ frame_updates[frame_idx] = calibration_frame_fields(
294
+ frame_id,
295
+ sample["sequence_id"],
296
+ max_depth,
297
+ metadata,
298
+ )
299
+
300
+ sample.frames.update(frame_updates)
301
+ sample.save()
302
+
303
+ return dataset
304
+
305
+
306
+ def import_dataset(
307
+ tar_dir: Path,
308
+ processed_root: Path,
309
+ dataset_name: str,
310
+ fps: int,
311
+ overwrite: bool,
312
+ ) -> fo.Dataset:
313
+ """Extract all tars and create a persistent FiftyOne video dataset."""
314
+ tar_map = tar_sequence_map(tar_dir)
315
+ if not tar_map:
316
+ raise FileNotFoundError(f"No tar files found in {tar_dir}")
317
+
318
+ if dataset_name in fo.list_datasets():
319
+ if not overwrite:
320
+ raise ValueError(
321
+ f"Dataset '{dataset_name}' already exists. Pass --overwrite to replace it."
322
+ )
323
+ fo.delete_dataset(dataset_name)
324
+
325
+ dataset = fo.Dataset(dataset_name)
326
+ dataset.persistent = True
327
+
328
+ samples = [
329
+ build_video_sample(sequence_id, tar_path, processed_root, fps)
330
+ for sequence_id, tar_path in tqdm(tar_map.items(), desc="Processing sequences")
331
+ ]
332
+ dataset.add_samples(samples)
333
+ dataset.compute_metadata()
334
+ return dataset
335
+
336
+
337
+ def print_dataset_summary(dataset: fo.Dataset) -> None:
338
+ """Print a short import summary for the created or updated dataset."""
339
+ frame_counts = dataset.values("frame_count")
340
+ preview = frame_counts[:3] if frame_counts else []
341
+ print(f"Dataset: {dataset.name}")
342
+ print(f"Samples: {len(dataset)}")
343
+ print(f"Media type: {dataset.media_type}")
344
+ print(f"Frames per sample (first 3): {preview}")
345
+ print(f"Total frame documents: {dataset.count('frames')}")
346
+ print(f"Sample fields: {list(dataset.get_field_schema().keys())}")
347
+ print(f"Frame fields: {list(dataset.get_frame_field_schema().keys())}")
348
+
349
+
350
+ def main() -> None:
351
+ parser = argparse.ArgumentParser(description=__doc__)
352
+ parser.add_argument(
353
+ "--tar-dir",
354
+ type=Path,
355
+ default=Path("data/tars/test"),
356
+ help="Directory containing downloaded WebDataset tar files",
357
+ )
358
+ parser.add_argument(
359
+ "--processed-root",
360
+ type=Path,
361
+ default=Path("data/processed"),
362
+ help="Directory where extracted PNG/JSON assets and rgb.mp4 files are written",
363
+ )
364
+ parser.add_argument(
365
+ "--dataset-name",
366
+ default="TransPhy3D",
367
+ help="Name of the FiftyOne dataset to create or update",
368
+ )
369
+ parser.add_argument(
370
+ "--fps",
371
+ type=int,
372
+ default=30,
373
+ help="FPS used when assembling rgb.mp4 from extracted PNG frames",
374
+ )
375
+ parser.add_argument(
376
+ "--overwrite",
377
+ action="store_true",
378
+ help="Replace an existing FiftyOne dataset with the same name",
379
+ )
380
+ parser.add_argument(
381
+ "--update-json-only",
382
+ action="store_true",
383
+ help="Refresh on-disk JSON files and update calibration frame fields",
384
+ )
385
+ parser.add_argument(
386
+ "--extract-json-only",
387
+ action="store_true",
388
+ help="Write depth_json/ and metadata/ files to disk only",
389
+ )
390
+ args = parser.parse_args()
391
+
392
+ if args.extract_json_only and args.update_json_only:
393
+ parser.error("Choose only one of --extract-json-only or --update-json-only")
394
+
395
+ if args.extract_json_only:
396
+ backfill_json_files(args.tar_dir, args.processed_root)
397
+ print(f"Wrote JSON files under {args.processed_root}")
398
+ return
399
+
400
+ if args.update_json_only:
401
+ dataset = refresh_calibration_fields(args.tar_dir, args.processed_root, args.dataset_name)
402
+ else:
403
+ dataset = import_dataset(
404
+ args.tar_dir,
405
+ args.processed_root,
406
+ args.dataset_name,
407
+ args.fps,
408
+ args.overwrite,
409
+ )
410
+
411
+ print_dataset_summary(dataset)
412
+
413
+
414
+ if __name__ == "__main__":
415
+ main()
reconstruct_scenes.py ADDED
@@ -0,0 +1,436 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/usr/bin/env python3
2
+ """Build merged RGB point clouds and grouped FiftyOne scenes for TransPhy3D.
3
+
4
+ Pipeline
5
+ --------
6
+ 1. Read per-frame depth PNGs, ``depth.json``, and ``metadata.json`` from disk.
7
+ 2. Match each depth frame to the corresponding RGB frame in ``rgb.mp4``.
8
+ 3. Back-project depth pixels into a shared world coordinate system.
9
+ 4. Color each 3D point from the RGB image.
10
+ 5. Merge all frames into one point cloud per sequence.
11
+ 6. Export ``scene.pcd`` and a FiftyOne ``scene.fo3d`` scene file.
12
+
13
+ Optionally builds a grouped FiftyOne dataset with two linked slices per
14
+ sequence: ``video`` (RGB video + frame annotations) and ``reconstruction``
15
+ (merged point cloud in ``scene.fo3d``).
16
+
17
+ Run with the ``fiftyone`` conda environment::
18
+
19
+ conda activate fiftyone
20
+ python reconstruct_scenes.py --build-dataset --overwrite
21
+
22
+ Math reference
23
+ --------------
24
+ Depth decoding::
25
+
26
+ Z = png_value / 65535 * max_depth
27
+
28
+ Pinhole back-projection::
29
+
30
+ X = (u - cx) * Z / fx
31
+ Y = (v - cy) * Z / fy
32
+
33
+ World coordinates::
34
+
35
+ [Xw, Yw, Zw, 1]^T = T @ [X, Y, Z, 1]^T
36
+ """
37
+
38
+ from __future__ import annotations
39
+
40
+ import argparse
41
+ import json
42
+ from pathlib import Path
43
+
44
+ import cv2
45
+ import fiftyone as fo
46
+ import numpy as np
47
+ import open3d as o3d
48
+ from PIL import Image
49
+ from tqdm import tqdm
50
+
51
+ from import_transphy3d import (
52
+ build_video_sample_from_disk,
53
+ scene_type,
54
+ sorted_frame_ids,
55
+ tar_sequence_map,
56
+ )
57
+
58
+
59
+ def pixel_intrinsics(k_norm: list[list[float]], width: int, height: int) -> np.ndarray:
60
+ """Convert normalized camera intrinsics to a pixel-space ``K`` matrix."""
61
+ k = np.eye(3, dtype=np.float64)
62
+ k[0, 0] = k_norm[0][0] * width
63
+ k[1, 1] = k_norm[1][1] * height
64
+ k[0, 2] = k_norm[0][2] * width
65
+ k[1, 2] = k_norm[1][2] * height
66
+ return k
67
+
68
+
69
+ def decode_depth(depth_path: Path, max_depth: float) -> np.ndarray:
70
+ """Decode a 16-bit depth PNG into metric depth values."""
71
+ depth_u16 = np.array(Image.open(depth_path), dtype=np.uint16)
72
+ return depth_u16.astype(np.float64) / 65535.0 * max_depth
73
+
74
+
75
+ def load_frame_calibration(seq_dir: Path, frame_id: int) -> tuple[float, np.ndarray, np.ndarray]:
76
+ """Load metric depth scale and camera matrices for one frame."""
77
+ stem = f"{frame_id:08d}"
78
+ max_depth = json.loads((seq_dir / "depth_json" / f"{stem}.json").read_text())["max_depth"]
79
+ cameras = json.loads((seq_dir / "metadata" / f"{stem}.json").read_text())["camera_matrices"]
80
+ extrinsics = np.array(cameras["extrinsics"], dtype=np.float64)
81
+ intrinsics = np.array(cameras["intrinsics"], dtype=np.float64)
82
+ return max_depth, extrinsics, intrinsics
83
+
84
+
85
+ def subsample_valid_depth(
86
+ depth: np.ndarray,
87
+ stride: int,
88
+ ) -> tuple[np.ndarray, np.ndarray, np.ndarray]:
89
+ """Return subsampled pixel coordinates and depth values with valid measurements."""
90
+ v_coords, u_coords = np.mgrid[0 : depth.shape[0] : stride, 0 : depth.shape[1] : stride]
91
+ depths = depth[v_coords, u_coords]
92
+ valid = np.isfinite(depths) & (depths > 0)
93
+ return u_coords, v_coords, depths, valid
94
+
95
+
96
+ def camera_to_world(
97
+ u: np.ndarray,
98
+ v: np.ndarray,
99
+ depth: np.ndarray,
100
+ k: np.ndarray,
101
+ extrinsics: np.ndarray,
102
+ *,
103
+ z_sign: float,
104
+ use_inverse: bool,
105
+ ) -> np.ndarray:
106
+ """Back-project pixel coordinates into world-space 3D points."""
107
+ x = (u - k[0, 2]) * depth / k[0, 0]
108
+ y = (v - k[1, 2]) * depth / k[1, 1]
109
+ z = z_sign * depth
110
+ pts_cam = np.stack([x, y, z, np.ones_like(z)], axis=1)
111
+ transform = np.linalg.inv(extrinsics) if use_inverse else extrinsics
112
+ return (transform @ pts_cam.T).T[:, :3]
113
+
114
+
115
+ def backproject_pixels(
116
+ depth: np.ndarray,
117
+ rgb: np.ndarray,
118
+ k: np.ndarray,
119
+ extrinsics: np.ndarray,
120
+ *,
121
+ stride: int,
122
+ z_sign: float,
123
+ use_inverse: bool,
124
+ ) -> tuple[np.ndarray, np.ndarray]:
125
+ """Back-project a depth/RGB frame pair into colored world points."""
126
+ u_coords, v_coords, depths, valid = subsample_valid_depth(depth, stride)
127
+ if not np.any(valid):
128
+ return np.empty((0, 3)), np.empty((0, 3))
129
+
130
+ u = u_coords[valid].astype(np.float64)
131
+ v = v_coords[valid].astype(np.float64)
132
+ d = depths[valid]
133
+ points = camera_to_world(u, v, d, k, extrinsics, z_sign=z_sign, use_inverse=use_inverse)
134
+ colors = rgb[v_coords[valid], u_coords[valid]].astype(np.float64) / 255.0
135
+ return points, colors
136
+
137
+
138
+ def reprojection_error(
139
+ points_world: np.ndarray,
140
+ u_orig: np.ndarray,
141
+ v_orig: np.ndarray,
142
+ k: np.ndarray,
143
+ extrinsics: np.ndarray,
144
+ *,
145
+ z_sign: float,
146
+ use_inverse: bool,
147
+ ) -> float:
148
+ """Mean pixel reprojection error for a candidate camera convention."""
149
+ transform = extrinsics if use_inverse else np.linalg.inv(extrinsics)
150
+ pts_cam = (transform @ np.hstack([points_world, np.ones((len(points_world), 1))]).T).T[:, :3]
151
+ valid = pts_cam[:, 2] > 1e-6
152
+ if not np.any(valid):
153
+ return np.inf
154
+
155
+ u_proj = k[0, 0] * pts_cam[valid, 0] / pts_cam[valid, 2] + k[0, 2]
156
+ v_proj = k[1, 1] * pts_cam[valid, 1] / pts_cam[valid, 2] + k[1, 2]
157
+ return float(np.hypot(u_proj - u_orig[valid], v_proj - v_orig[valid]).mean())
158
+
159
+
160
+ def choose_backprojection_convention(
161
+ depth: np.ndarray,
162
+ k: np.ndarray,
163
+ extrinsics: np.ndarray,
164
+ *,
165
+ stride: int,
166
+ ) -> tuple[float, bool]:
167
+ """Pick the camera convention with the lowest reprojection error."""
168
+ u_coords, v_coords, depths, valid = subsample_valid_depth(depth, max(stride, 4))
169
+ u_sample = u_coords[valid][:5000].astype(np.float64)
170
+ v_sample = v_coords[valid][:5000].astype(np.float64)
171
+ d_sample = depths[valid][:5000]
172
+
173
+ best_error = np.inf
174
+ best_z_sign = 1.0
175
+ best_use_inverse = False
176
+
177
+ for z_sign in (1.0, -1.0):
178
+ for use_inverse in (False, True):
179
+ points = camera_to_world(
180
+ u_sample,
181
+ v_sample,
182
+ d_sample,
183
+ k,
184
+ extrinsics,
185
+ z_sign=z_sign,
186
+ use_inverse=use_inverse,
187
+ )
188
+ err = reprojection_error(
189
+ points,
190
+ u_sample,
191
+ v_sample,
192
+ k,
193
+ extrinsics,
194
+ z_sign=z_sign,
195
+ use_inverse=use_inverse,
196
+ )
197
+ if err < best_error:
198
+ best_error = err
199
+ best_z_sign = z_sign
200
+ best_use_inverse = use_inverse
201
+
202
+ return best_z_sign, best_use_inverse
203
+
204
+
205
+ def reconstruct_sequence(
206
+ seq_dir: Path,
207
+ *,
208
+ stride: int,
209
+ voxel_size: float,
210
+ max_depth_ratio: float,
211
+ ) -> tuple[Path, Path, int]:
212
+ """Reconstruct one sequence into a merged RGB-colored point cloud."""
213
+ frame_ids = sorted_frame_ids(seq_dir)
214
+ if not frame_ids:
215
+ raise ValueError(f"No depth frames found in {seq_dir / 'depth'}")
216
+
217
+ video_path = seq_dir / "rgb.mp4"
218
+ cap = cv2.VideoCapture(str(video_path))
219
+ if not cap.isOpened():
220
+ raise RuntimeError(f"Could not open video: {video_path}")
221
+
222
+ all_points: list[np.ndarray] = []
223
+ all_colors: list[np.ndarray] = []
224
+ z_sign = 1.0
225
+ use_inverse = False
226
+ k: np.ndarray | None = None
227
+
228
+ try:
229
+ for frame_index, frame_id in enumerate(frame_ids):
230
+ ok, frame_bgr = cap.read()
231
+ if not ok:
232
+ raise RuntimeError(f"Could not read frame {frame_index} from {video_path}")
233
+
234
+ rgb = cv2.cvtColor(frame_bgr, cv2.COLOR_BGR2RGB)
235
+ max_depth, extrinsics, intrinsics = load_frame_calibration(seq_dir, frame_id)
236
+ depth = decode_depth(seq_dir / "depth" / f"{frame_id:08d}.png", max_depth)
237
+ depth[depth > max_depth * max_depth_ratio] = 0
238
+
239
+ if k is None:
240
+ height, width = rgb.shape[:2]
241
+ k = pixel_intrinsics(intrinsics.tolist(), width, height)
242
+ z_sign, use_inverse = choose_backprojection_convention(
243
+ depth,
244
+ k,
245
+ extrinsics,
246
+ stride=stride,
247
+ )
248
+
249
+ points, colors = backproject_pixels(
250
+ depth,
251
+ rgb,
252
+ k,
253
+ extrinsics,
254
+ stride=stride,
255
+ z_sign=z_sign,
256
+ use_inverse=use_inverse,
257
+ )
258
+ if len(points):
259
+ all_points.append(points)
260
+ all_colors.append(colors)
261
+ finally:
262
+ cap.release()
263
+
264
+ if not all_points:
265
+ raise ValueError(f"No valid depth points reconstructed for {seq_dir.name}")
266
+
267
+ pcd = o3d.geometry.PointCloud()
268
+ pcd.points = o3d.utility.Vector3dVector(np.vstack(all_points))
269
+ pcd.colors = o3d.utility.Vector3dVector(np.vstack(all_colors))
270
+ if voxel_size > 0:
271
+ pcd = pcd.voxel_down_sample(voxel_size)
272
+
273
+ pcd_path = (seq_dir / "scene.pcd").resolve()
274
+ fo3d_path = (seq_dir / "scene.fo3d").resolve()
275
+ o3d.io.write_point_cloud(str(pcd_path), pcd)
276
+
277
+ scene = fo.Scene(camera=fo.PerspectiveCamera(up="Z"))
278
+ cloud = fo.PointCloud("reconstruction", str(pcd_path), flag_for_projection=True)
279
+ cloud.default_material.point_size = 2
280
+ scene.add(cloud)
281
+ scene.write(str(fo3d_path))
282
+
283
+ return pcd_path, fo3d_path, len(pcd.points)
284
+
285
+
286
+ def build_grouped_dataset(
287
+ processed_root: Path,
288
+ tar_dir: Path,
289
+ target_dataset_name: str,
290
+ overwrite: bool,
291
+ ) -> fo.Dataset:
292
+ """Create a grouped FiftyOne dataset with video and reconstruction slices."""
293
+ if target_dataset_name in fo.list_datasets():
294
+ if not overwrite:
295
+ raise ValueError(
296
+ f"Dataset '{target_dataset_name}' already exists. "
297
+ "Pass --overwrite to replace it."
298
+ )
299
+ fo.delete_dataset(target_dataset_name)
300
+
301
+ target = fo.Dataset(target_dataset_name)
302
+ target.persistent = True
303
+ target.add_group_field("group", default="video")
304
+
305
+ samples = []
306
+ for sequence_id, tar_path in tqdm(tar_sequence_map(tar_dir).items(), desc="Building grouped dataset"):
307
+ seq_dir = processed_root / sequence_id
308
+ fo3d_path = (seq_dir / "scene.fo3d").resolve()
309
+ if not fo3d_path.exists():
310
+ raise FileNotFoundError(f"Missing reconstruction for {sequence_id}")
311
+
312
+ group = fo.Group()
313
+ video = build_video_sample_from_disk(sequence_id, processed_root, tar_path.name)
314
+ video["group"] = group.element("video")
315
+
316
+ reconstruction = fo.Sample(
317
+ filepath=str(fo3d_path),
318
+ group=group.element("reconstruction"),
319
+ )
320
+ reconstruction["sequence_id"] = sequence_id
321
+ reconstruction["scene_type"] = scene_type(sequence_id)
322
+ reconstruction["point_cloud_path"] = str((seq_dir / "scene.pcd").resolve())
323
+ reconstruction["tags"] = ["test", "reconstruction"]
324
+ samples.extend([video, reconstruction])
325
+
326
+ target.add_samples(samples)
327
+ target.compute_metadata()
328
+ return target
329
+
330
+
331
+ def list_sequence_dirs(processed_root: Path, sequence: str | None) -> list[Path]:
332
+ """Return sequence directories to reconstruct."""
333
+ if sequence:
334
+ seq_dir = processed_root / sequence
335
+ if not seq_dir.is_dir():
336
+ raise FileNotFoundError(f"Sequence directory not found: {seq_dir}")
337
+ return [seq_dir]
338
+ return sorted(path for path in processed_root.iterdir() if path.is_dir())
339
+
340
+
341
+ def print_grouped_summary(dataset: fo.Dataset) -> None:
342
+ """Print a short summary after building the grouped dataset."""
343
+ print(f"Grouped dataset: {dataset.name}")
344
+ print(f"Groups: {len(dataset)}")
345
+ print(f"Slices: {dataset.group_slices}")
346
+ print(f"Media types: {dataset.group_media_types}")
347
+ print(f"Total frame documents: {dataset.count('frames')}")
348
+
349
+
350
+ def main() -> None:
351
+ parser = argparse.ArgumentParser(description=__doc__)
352
+ parser.add_argument(
353
+ "--processed-root",
354
+ type=Path,
355
+ default=Path("data/processed"),
356
+ help="Root directory containing per-sequence processed assets",
357
+ )
358
+ parser.add_argument(
359
+ "--tar-dir",
360
+ type=Path,
361
+ default=Path("data/tars/test"),
362
+ help="Directory of source WebDataset tar files",
363
+ )
364
+ parser.add_argument(
365
+ "--sequence",
366
+ default=None,
367
+ help="Reconstruct a single sequence id instead of all sequences",
368
+ )
369
+ parser.add_argument(
370
+ "--stride",
371
+ type=int,
372
+ default=4,
373
+ help="Pixel subsampling stride during back-projection",
374
+ )
375
+ parser.add_argument(
376
+ "--voxel-size",
377
+ type=float,
378
+ default=0.01,
379
+ help="Open3D voxel size for downsampling; 0 disables downsampling",
380
+ )
381
+ parser.add_argument(
382
+ "--max-depth-ratio",
383
+ type=float,
384
+ default=0.999,
385
+ help="Zero depths above max_depth * ratio to remove far-plane saturation",
386
+ )
387
+ parser.add_argument(
388
+ "--build-dataset",
389
+ action="store_true",
390
+ help="After reconstruction, build the grouped FiftyOne dataset",
391
+ )
392
+ parser.add_argument(
393
+ "--build-dataset-only",
394
+ action="store_true",
395
+ help="Skip reconstruction and only build the grouped FiftyOne dataset",
396
+ )
397
+ parser.add_argument(
398
+ "--target-dataset",
399
+ default="TransPhy3D",
400
+ help="Name of the grouped FiftyOne dataset to create",
401
+ )
402
+ parser.add_argument(
403
+ "--overwrite",
404
+ action="store_true",
405
+ help="Replace an existing FiftyOne dataset with the same name",
406
+ )
407
+ args = parser.parse_args()
408
+
409
+ if args.build_dataset and args.build_dataset_only:
410
+ parser.error("Choose only one of --build-dataset or --build-dataset-only")
411
+
412
+ if not args.build_dataset_only:
413
+ for seq_dir in tqdm(
414
+ list_sequence_dirs(args.processed_root, args.sequence),
415
+ desc="Reconstructing sequences",
416
+ ):
417
+ _, fo3d_path, n_points = reconstruct_sequence(
418
+ seq_dir,
419
+ stride=args.stride,
420
+ voxel_size=args.voxel_size,
421
+ max_depth_ratio=args.max_depth_ratio,
422
+ )
423
+ print(f"{seq_dir.name}: {n_points:,} points -> {fo3d_path.name}")
424
+
425
+ if args.build_dataset or args.build_dataset_only:
426
+ dataset = build_grouped_dataset(
427
+ args.processed_root,
428
+ args.tar_dir,
429
+ args.target_dataset,
430
+ args.overwrite,
431
+ )
432
+ print_grouped_summary(dataset)
433
+
434
+
435
+ if __name__ == "__main__":
436
+ main()