{ "cells": [ { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "The clinical data contains 816 patients.\n", "the number of positive cases is:115\n", "the number of negtive cases is:701\n", "75\n", "661\n", "40 0000279724\n", "41 0000301982\n", "42 0000292626\n", "43 0000272021\n", "44 0000293099\n", " ... \n", "110 0000287095\n", "111 0000284687\n", "112 0000300298\n", "113 0000242134\n", "114 0000250277\n", "Name: ID, Length: 75, dtype: object\n", "661\n" ] } ], "source": [ "#重采样的样本2025-0226 (不能随意运行第一段代码 训练测试的数据会改变) OS\n", "import os\n", "import shutil\n", "import pandas as pd\n", "from sklearn.model_selection import train_test_split\n", "import SimpleITK as sitk\n", "\n", "root_dir = '/home/xtm/kyr_data/original_data/combined/Before'\n", "# train_dir = '/home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample_0226'\n", "# test_dir = '/home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0221_OS/OS_test_0226'\n", "clinical_data_path = '/home/xtm/kyr_data/original_data/clinic data/kyr_English_zhongshan_clin_fea.xlsx' # 请将此路径替换为实际的临床数据文件路径\n", "data_dir = '/home/xtm/kyr_data/original_data/combined'\n", "\n", "\n", "# 加载临床数据\n", "clinical_data = pd.read_excel(clinical_data_path)\n", "\n", "# 去除列名中的空格\n", "clinical_data.columns = clinical_data.columns.str.strip()\n", "\n", "# 确保临床数据中包含'ID'和'OS'列\n", "if 'ID' not in clinical_data.columns or 'OS' not in clinical_data.columns:\n", " raise ValueError(\"The clinical data must include the 'ID' and 'OS' columns.\")\n", "\n", "# 获取root_dir中所有子目录的名称\n", "patient_dirs = set(d for d in os.listdir(root_dir) if os.path.isdir(os.path.join(root_dir, d)))\n", "\n", "# 过滤出在root_dir中存在对应子目录的患者数据\n", "clinical_data = clinical_data[clinical_data['ID'].astype(str).isin(patient_dirs)]\n", "\n", "#检查每个病人所需的的病例文件是否存在 缺失任何病例文件则剔除该病人\n", "def necessary_data(base_dir,patient_id):\n", " #实验所需的文件\n", " before_image_path_t1 = os.path.join(data_dir, 'Before', patient_id, 'T1.nii.gz')\n", " before_image_path_t2 = os.path.join(data_dir, 'Before', patient_id, 'T2.nii.gz')\n", " before_mask_path = os.path.join(data_dir, 'Before', patient_id, 'mask_all.nii.gz')\n", "\n", " after_image_path_t1 = os.path.join(data_dir, 'After_registed', patient_id, 'T1.nii.gz')\n", " after_image_path_t2 = os.path.join(data_dir, 'After_registed', patient_id, 'T2.nii.gz')\n", " after_mask_path = os.path.join(data_dir, 'After_registed', patient_id, 'mask_all.nii.gz')\n", " \n", " # 检查所有文件是否存在\n", " required_files = [before_image_path_t1, before_image_path_t2, before_mask_path, \n", " after_image_path_t1, after_image_path_t2, after_mask_path]\n", " \n", " for file_path in required_files:\n", " if not os.path.exists(file_path):\n", " print(f\"Missing file for patient {patient_id}: {file_path}\")\n", " return False\n", " return True\n", "\n", "#遍历所有的ID检查文件是否齐全\n", "valid_patient_ids = []\n", "for patient_id in clinical_data['ID']:\n", " if necessary_data(root_dir, patient_id):\n", " valid_patient_ids.append(patient_id)\n", " else:\n", " print(f\"Missing data for patient {patient_id}\")\n", " \n", "#过滤出文件齐全的病人 815\n", "clinical_data = clinical_data[clinical_data['ID'].isin(valid_patient_ids)]\n", "print(f\"The clinical data contains {len(clinical_data)} patients.\")\n", "\n", "\n", "print(f\"The clinical data contains {len(clinical_data)} patients.\")\n", "\n", "# 阴性 阳性病例\n", "positive_cases = clinical_data[clinical_data['OS'] == 1]\n", "negtive_cases = clinical_data[clinical_data['OS'] == 0]\n", "\n", "print(f\"the number of positive cases is:{len(positive_cases)}\")\n", "print(f\"the number of negtive cases is:{len(negtive_cases)}\")\n", "\n", "#打乱阴性病例和阳性病例\n", "positive_cases = positive_cases.sample(frac=1).reset_index(drop=True)\n", "negtive_cases = negtive_cases.sample(frac=1).reset_index(drop=True)\n", "\n", "# 划分训练集和测试集 阴性阳性各随机抽40个作为测试集 其余用作训练集\n", "test_positive = positive_cases.head(40)\n", "test_negative = negtive_cases.head(40)\n", "\n", "#合并为测试集\n", "test_patient = pd.concat([test_positive, test_negative])\n", "\n", "# 获取剩余的阳性和阴性病例\n", "conditate_train_positive = positive_cases.tail(len(positive_cases) - 40)\n", "candidate_train_negtive = negtive_cases.tail(len(negtive_cases) - 40)\n", "\n", "print(len(conditate_train_positive))\n", "print(len(candidate_train_negtive))\n", "\n", "#计算需要重复采样多少次阳性样本来匹配阴性样本数量\n", "num_samples = len(candidate_train_negtive)-len(conditate_train_positive)\n", "\n", "\n", "#生成训练阳性样本的目录 并且要加后缀 让训练集的比例达到661：661\n", "\n", "print(conditate_train_positive['ID'])\n", "\n", "resample_positive_data = conditate_train_positive.sample(len(candidate_train_negtive),replace = True,random_state=42)\n", "\n", "\n", "print(len(resample_positive_data['ID'])) #661\n", "# resample_positive_data.to_csv('/home/kyr/Dataset-draft/kyr-0225/resample_positive_data.csv',index=False)\n", "\n", "#对剩余的阳性样本加后缀\n", "#设定重采样的轮数\n", "resample_num = 1\n", "\n", "# 创建一个字典来追踪每个ID的出现次数\n", "id_count = {}\n", "\n", "#创建一个列表来存储重采样的文件名\n", "resample_filenames = []\n", "\n", "# 按顺序重复采样阳性病例，直到数量匹配\n", "resample_positive_data = conditate_train_positive.copy()\n", "\n", "# 按顺序重复阳性样本\n", "while len(resample_positive_data) < len(candidate_train_negtive):\n", " resample_positive_data = pd.concat([resample_positive_data, conditate_train_positive], ignore_index=True)\n", " \n", "# 截取匹配数量的阳性样本\n", "resample_positive_data = resample_positive_data.head(len(candidate_train_negtive))\n", " \n", "# #遍历重采样的阳性数据\n", "# for i,row in resample_positive_data.iterrows():\n", "# patient_id = row['ID']\n", " \n", "# #若改id已经出现过，增加计数器\n", "# if patient_id in id_count:\n", "# id_count[patient_id] += 1\n", "# else:\n", "# id_count[patient_id] = 1\n", " \n", "# #根据出现次数生成唯一的后缀\n", "# unique_suffix = id_count[patient_id] #获取键为patient_id的值（次数）\n", " \n", "# #查找每个患者的图像文件\n", "# patient_png_dir = os.path.join(root_dir,str(patient_id), \"combine.png\")\n", " \n", "# #检查文件是否存在\n", "# if os.path.exists(patient_png_dir):\n", "# #生成重采样的文件名\n", "# resample_directory = os.path.join(train_dir,f\"{patient_id}_{unique_suffix}\")\n", " \n", "# # 创建该目录（如果不存在）\n", "# os.makedirs(resample_directory, exist_ok=True)\n", " \n", "# # 复制图像文件到新的目录\n", "# new_file_path = os.path.join(resample_directory, f\"{patient_id}.png\")\n", "# shutil.copy(patient_png_dir, new_file_path)\n", " \n", "# #输出带有后缀的文件名\n", "# print(\"Resampled successfully!\")\n", " \n" ] }, { "cell_type": "code", "execution_count": 7, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "75\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298175/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298175/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298175/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298175/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298175/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298175/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298175/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298175/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [15, 16, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [15, 16, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "24\n", "24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_1/slicer_24_1.png\n", "Saving slicer 2 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_1/slicer_24_2.png\n", "Saving slicer 3 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_1/slicer_24_3.png\n", "Saving slicer 4 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_1/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000298175.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_2/slicer_26_1.png\n", "Saving slicer 2 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_2/slicer_26_2.png\n", "Saving slicer 3 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_2/slicer_26_3.png\n", "Saving slicer 4 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_2/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000298175.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_3/slicer_25_1.png\n", "Saving slicer 2 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_3/slicer_25_2.png\n", "Saving slicer 3 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_3/slicer_25_3.png\n", "Saving slicer 4 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_3/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000298175.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_4/slicer_28_1.png\n", "Saving slicer 2 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_4/slicer_28_2.png\n", "Saving slicer 3 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_4/slicer_28_3.png\n", "Saving slicer 4 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_4/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000298175.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_5/slicer_27_1.png\n", "Saving slicer 2 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_5/slicer_27_2.png\n", "Saving slicer 3 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_5/slicer_27_3.png\n", "Saving slicer 4 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_5/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000298175.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_6/slicer_29_1.png\n", "Saving slicer 2 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_6/slicer_29_2.png\n", "Saving slicer 3 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_6/slicer_29_3.png\n", "Saving slicer 4 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_6/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000298175.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_7/slicer_30_1.png\n", "Saving slicer 2 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_7/slicer_30_2.png\n", "Saving slicer 3 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_7/slicer_30_3.png\n", "Saving slicer 4 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_7/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000298175.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_8/slicer_31_1.png\n", "Saving slicer 2 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_8/slicer_31_2.png\n", "Saving slicer 3 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_8/slicer_31_3.png\n", "Saving slicer 4 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_8/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000298175.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_9/slicer_23_1.png\n", "Saving slicer 2 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_9/slicer_23_2.png\n", "Saving slicer 3 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_9/slicer_23_3.png\n", "Saving slicer 4 for patient 0000298175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298175_9/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000298175.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000275271/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000275271/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000275271/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000275271/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275271/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275271/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275271/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275271/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30]\n", "24\n", "24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_1/slicer_29_1.png\n", "Saving slicer 2 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_1/slicer_29_2.png\n", "Saving slicer 3 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_1/slicer_29_3.png\n", "Saving slicer 4 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_1/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000275271.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_2/slicer_28_1.png\n", "Saving slicer 2 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_2/slicer_28_2.png\n", "Saving slicer 3 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_2/slicer_28_3.png\n", "Saving slicer 4 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_2/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000275271.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_3/slicer_27_1.png\n", "Saving slicer 2 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_3/slicer_27_2.png\n", "Saving slicer 3 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_3/slicer_27_3.png\n", "Saving slicer 4 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_3/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000275271.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_4/slicer_26_1.png\n", "Saving slicer 2 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_4/slicer_26_2.png\n", "Saving slicer 3 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_4/slicer_26_3.png\n", "Saving slicer 4 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_4/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000275271.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_5/slicer_20_1.png\n", "Saving slicer 2 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_5/slicer_20_2.png\n", "Saving slicer 3 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_5/slicer_20_3.png\n", "Saving slicer 4 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_5/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000275271.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_6/slicer_21_1.png\n", "Saving slicer 2 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_6/slicer_21_2.png\n", "Saving slicer 3 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_6/slicer_21_3.png\n", "Saving slicer 4 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_6/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000275271.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_7/slicer_17_1.png\n", "Saving slicer 2 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_7/slicer_17_2.png\n", "Saving slicer 3 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_7/slicer_17_3.png\n", "Saving slicer 4 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_7/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000275271.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_8/slicer_16_1.png\n", "Saving slicer 2 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_8/slicer_16_2.png\n", "Saving slicer 3 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_8/slicer_16_3.png\n", "Saving slicer 4 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_8/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000275271.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_9/slicer_19_1.png\n", "Saving slicer 2 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_9/slicer_19_2.png\n", "Saving slicer 3 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_9/slicer_19_3.png\n", "Saving slicer 4 for patient 0000275271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275271_9/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000275271.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000312845/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000312845/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000312845/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000312845/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312845/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312845/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312845/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312845/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [18, 19, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [18, 19, 23, 24, 25, 26, 27, 28, 29, 30]\n", "13\n", "13\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_1/slicer_27_1.png\n", "Saving slicer 2 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_1/slicer_27_2.png\n", "Saving slicer 3 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_1/slicer_27_3.png\n", "Saving slicer 4 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_1/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000312845.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_2/slicer_28_1.png\n", "Saving slicer 2 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_2/slicer_28_2.png\n", "Saving slicer 3 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_2/slicer_28_3.png\n", "Saving slicer 4 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_2/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000312845.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_3/slicer_26_1.png\n", "Saving slicer 2 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_3/slicer_26_2.png\n", "Saving slicer 3 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_3/slicer_26_3.png\n", "Saving slicer 4 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_3/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000312845.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_4/slicer_25_1.png\n", "Saving slicer 2 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_4/slicer_25_2.png\n", "Saving slicer 3 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_4/slicer_25_3.png\n", "Saving slicer 4 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_4/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000312845.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_5/slicer_29_1.png\n", "Saving slicer 2 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_5/slicer_29_2.png\n", "Saving slicer 3 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_5/slicer_29_3.png\n", "Saving slicer 4 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_5/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000312845.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_6/slicer_24_1.png\n", "Saving slicer 2 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_6/slicer_24_2.png\n", "Saving slicer 3 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_6/slicer_24_3.png\n", "Saving slicer 4 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_6/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000312845.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_7/slicer_23_1.png\n", "Saving slicer 2 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_7/slicer_23_2.png\n", "Saving slicer 3 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_7/slicer_23_3.png\n", "Saving slicer 4 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_7/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000312845.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_8/slicer_30_1.png\n", "Saving slicer 2 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_8/slicer_30_2.png\n", "Saving slicer 3 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_8/slicer_30_3.png\n", "Saving slicer 4 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_8/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000312845.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_9/slicer_22_1.png\n", "Saving slicer 2 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_9/slicer_22_2.png\n", "Saving slicer 3 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_9/slicer_22_3.png\n", "Saving slicer 4 for patient 0000312845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000312845_9/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000312845.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272021/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272021/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272021/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272021/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272021/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272021/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272021/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272021/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "26\n", "26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_1/slicer_29_1.png\n", "Saving slicer 2 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_1/slicer_29_2.png\n", "Saving slicer 3 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_1/slicer_29_3.png\n", "Saving slicer 4 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_1/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000272021.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_2/slicer_15_1.png\n", "Saving slicer 2 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_2/slicer_15_2.png\n", "Saving slicer 3 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_2/slicer_15_3.png\n", "Saving slicer 4 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_2/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000272021.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_3/slicer_16_1.png\n", "Saving slicer 2 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_3/slicer_16_2.png\n", "Saving slicer 3 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_3/slicer_16_3.png\n", "Saving slicer 4 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_3/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000272021.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_4/slicer_14_1.png\n", "Saving slicer 2 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_4/slicer_14_2.png\n", "Saving slicer 3 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_4/slicer_14_3.png\n", "Saving slicer 4 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_4/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000272021.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_5/slicer_18_1.png\n", "Saving slicer 2 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_5/slicer_18_2.png\n", "Saving slicer 3 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_5/slicer_18_3.png\n", "Saving slicer 4 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_5/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000272021.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_6/slicer_27_1.png\n", "Saving slicer 2 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_6/slicer_27_2.png\n", "Saving slicer 3 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_6/slicer_27_3.png\n", "Saving slicer 4 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_6/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000272021.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_7/slicer_17_1.png\n", "Saving slicer 2 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_7/slicer_17_2.png\n", "Saving slicer 3 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_7/slicer_17_3.png\n", "Saving slicer 4 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_7/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000272021.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_8/slicer_13_1.png\n", "Saving slicer 2 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_8/slicer_13_2.png\n", "Saving slicer 3 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_8/slicer_13_3.png\n", "Saving slicer 4 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_8/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000272021.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_9/slicer_28_1.png\n", "Saving slicer 2 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_9/slicer_28_2.png\n", "Saving slicer 3 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_9/slicer_28_3.png\n", "Saving slicer 4 for patient 0000272021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000272021_9/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000272021.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293099/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293099/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293099/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293099/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293099/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293099/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293099/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293099/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [6, 7, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "21\n", "21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_1/slicer_28_1.png\n", "Saving slicer 2 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_1/slicer_28_2.png\n", "Saving slicer 3 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_1/slicer_28_3.png\n", "Saving slicer 4 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_1/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000293099.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_2/slicer_16_1.png\n", "Saving slicer 2 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_2/slicer_16_2.png\n", "Saving slicer 3 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_2/slicer_16_3.png\n", "Saving slicer 4 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_2/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000293099.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_3/slicer_17_1.png\n", "Saving slicer 2 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_3/slicer_17_2.png\n", "Saving slicer 3 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_3/slicer_17_3.png\n", "Saving slicer 4 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_3/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000293099.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_4/slicer_18_1.png\n", "Saving slicer 2 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_4/slicer_18_2.png\n", "Saving slicer 3 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_4/slicer_18_3.png\n", "Saving slicer 4 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_4/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000293099.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_5/slicer_29_1.png\n", "Saving slicer 2 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_5/slicer_29_2.png\n", "Saving slicer 3 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_5/slicer_29_3.png\n", "Saving slicer 4 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_5/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000293099.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_6/slicer_15_1.png\n", "Saving slicer 2 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_6/slicer_15_2.png\n", "Saving slicer 3 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_6/slicer_15_3.png\n", "Saving slicer 4 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_6/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000293099.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_7/slicer_27_1.png\n", "Saving slicer 2 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_7/slicer_27_2.png\n", "Saving slicer 3 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_7/slicer_27_3.png\n", "Saving slicer 4 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_7/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000293099.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_8/slicer_26_1.png\n", "Saving slicer 2 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_8/slicer_26_2.png\n", "Saving slicer 3 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_8/slicer_26_3.png\n", "Saving slicer 4 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_8/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000293099.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_9/slicer_20_1.png\n", "Saving slicer 2 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_9/slicer_20_2.png\n", "Saving slicer 3 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_9/slicer_20_3.png\n", "Saving slicer 4 for patient 0000293099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293099_9/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000293099.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302389/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302389/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302389/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302389/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302389/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302389/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302389/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302389/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 16, 17, 18, 19, 20, 21, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "Before T2 ROI slices: [14, 16, 17, 18, 19, 20, 21, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "After T1 ROI slices: [17, 18, 19, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36]\n", "After T2 ROI slices: [17, 18, 19, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36]\n", "16\n", "16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_1/slicer_30_1.png\n", "Saving slicer 2 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_1/slicer_30_2.png\n", "Saving slicer 3 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_1/slicer_30_3.png\n", "Saving slicer 4 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_1/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000302389.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_2/slicer_31_1.png\n", "Saving slicer 2 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_2/slicer_31_2.png\n", "Saving slicer 3 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_2/slicer_31_3.png\n", "Saving slicer 4 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_2/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000302389.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_3/slicer_32_1.png\n", "Saving slicer 2 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_3/slicer_32_2.png\n", "Saving slicer 3 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_3/slicer_32_3.png\n", "Saving slicer 4 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_3/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000302389.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_4/slicer_33_1.png\n", "Saving slicer 2 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_4/slicer_33_2.png\n", "Saving slicer 3 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_4/slicer_33_3.png\n", "Saving slicer 4 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_4/slicer_33_4.png\n", "Successfully saved 4 slices for patient 0000302389.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_5/slicer_29_1.png\n", "Saving slicer 2 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_5/slicer_29_2.png\n", "Saving slicer 3 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_5/slicer_29_3.png\n", "Saving slicer 4 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_5/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000302389.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_6/slicer_28_1.png\n", "Saving slicer 2 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_6/slicer_28_2.png\n", "Saving slicer 3 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_6/slicer_28_3.png\n", "Saving slicer 4 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_6/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000302389.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_7/slicer_34_1.png\n", "Saving slicer 2 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_7/slicer_34_2.png\n", "Saving slicer 3 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_7/slicer_34_3.png\n", "Saving slicer 4 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_7/slicer_34_4.png\n", "Successfully saved 4 slices for patient 0000302389.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_8/slicer_27_1.png\n", "Saving slicer 2 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_8/slicer_27_2.png\n", "Saving slicer 3 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_8/slicer_27_3.png\n", "Saving slicer 4 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_8/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000302389.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [26] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [26] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_9/slicer_26_1.png\n", "Saving slicer 2 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_9/slicer_26_2.png\n", "Saving slicer 3 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_9/slicer_26_3.png\n", "Saving slicer 4 for patient 0000302389 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000302389_9/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000302389.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000288070/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000288070/mask_all.nii.gz\n", "Image shape: (36, 374, 384), Mask shape: (36, 374, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000288070/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000288070/mask_all.nii.gz\n", "Image shape: (36, 374, 384), Mask shape: (36, 374, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288070/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288070/mask_all.nii.gz\n", "Image shape: (36, 374, 384), Mask shape: (36, 374, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288070/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288070/mask_all.nii.gz\n", "Image shape: (36, 374, 384), Mask shape: (36, 374, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 24, 25, 26, 27]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 24, 25, 26, 27]\n", "22\n", "22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_1/slicer_15_1.png\n", "Saving slicer 2 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_1/slicer_15_2.png\n", "Saving slicer 3 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_1/slicer_15_3.png\n", "Saving slicer 4 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_1/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000288070.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_2/slicer_26_1.png\n", "Saving slicer 2 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_2/slicer_26_2.png\n", "Saving slicer 3 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_2/slicer_26_3.png\n", "Saving slicer 4 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_2/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000288070.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_3/slicer_16_1.png\n", "Saving slicer 2 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_3/slicer_16_2.png\n", "Saving slicer 3 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_3/slicer_16_3.png\n", "Saving slicer 4 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_3/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000288070.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_4/slicer_17_1.png\n", "Saving slicer 2 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_4/slicer_17_2.png\n", "Saving slicer 3 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_4/slicer_17_3.png\n", "Saving slicer 4 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_4/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000288070.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_5/slicer_14_1.png\n", "Saving slicer 2 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_5/slicer_14_2.png\n", "Saving slicer 3 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_5/slicer_14_3.png\n", "Saving slicer 4 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_5/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000288070.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_6/slicer_13_1.png\n", "Saving slicer 2 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_6/slicer_13_2.png\n", "Saving slicer 3 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_6/slicer_13_3.png\n", "Saving slicer 4 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_6/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000288070.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_7/slicer_27_1.png\n", "Saving slicer 2 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_7/slicer_27_2.png\n", "Saving slicer 3 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_7/slicer_27_3.png\n", "Saving slicer 4 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_7/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000288070.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_8/slicer_12_1.png\n", "Saving slicer 2 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_8/slicer_12_2.png\n", "Saving slicer 3 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_8/slicer_12_3.png\n", "Saving slicer 4 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_8/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000288070.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_9/slicer_18_1.png\n", "Saving slicer 2 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_9/slicer_18_2.png\n", "Saving slicer 3 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_9/slicer_18_3.png\n", "Saving slicer 4 for patient 0000288070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000288070_9/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000288070.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000258249/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000258249/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000258249/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000258249/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258249/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258249/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258249/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258249/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "23\n", "23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_1/slicer_26_1.png\n", "Saving slicer 2 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_1/slicer_26_2.png\n", "Saving slicer 3 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_1/slicer_26_3.png\n", "Saving slicer 4 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_1/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000258249.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_2/slicer_25_1.png\n", "Saving slicer 2 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_2/slicer_25_2.png\n", "Saving slicer 3 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_2/slicer_25_3.png\n", "Saving slicer 4 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_2/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000258249.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_3/slicer_23_1.png\n", "Saving slicer 2 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_3/slicer_23_2.png\n", "Saving slicer 3 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_3/slicer_23_3.png\n", "Saving slicer 4 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_3/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000258249.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_4/slicer_24_1.png\n", "Saving slicer 2 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_4/slicer_24_2.png\n", "Saving slicer 3 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_4/slicer_24_3.png\n", "Saving slicer 4 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_4/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000258249.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_5/slicer_15_1.png\n", "Saving slicer 2 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_5/slicer_15_2.png\n", "Saving slicer 3 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_5/slicer_15_3.png\n", "Saving slicer 4 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_5/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000258249.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_6/slicer_14_1.png\n", "Saving slicer 2 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_6/slicer_14_2.png\n", "Saving slicer 3 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_6/slicer_14_3.png\n", "Saving slicer 4 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_6/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000258249.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_7/slicer_16_1.png\n", "Saving slicer 2 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_7/slicer_16_2.png\n", "Saving slicer 3 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_7/slicer_16_3.png\n", "Saving slicer 4 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_7/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000258249.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_8/slicer_22_1.png\n", "Saving slicer 2 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_8/slicer_22_2.png\n", "Saving slicer 3 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_8/slicer_22_3.png\n", "Saving slicer 4 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_8/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000258249.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_9/slicer_17_1.png\n", "Saving slicer 2 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_9/slicer_17_2.png\n", "Saving slicer 3 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_9/slicer_17_3.png\n", "Saving slicer 4 for patient 0000258249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258249_9/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000258249.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267484/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267484/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267484/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267484/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267484/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267484/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267484/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267484/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "22\n", "22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_1/slicer_26_1.png\n", "Saving slicer 2 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_1/slicer_26_2.png\n", "Saving slicer 3 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_1/slicer_26_3.png\n", "Saving slicer 4 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_1/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000267484.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_2/slicer_27_1.png\n", "Saving slicer 2 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_2/slicer_27_2.png\n", "Saving slicer 3 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_2/slicer_27_3.png\n", "Saving slicer 4 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_2/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000267484.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_3/slicer_14_1.png\n", "Saving slicer 2 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_3/slicer_14_2.png\n", "Saving slicer 3 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_3/slicer_14_3.png\n", "Saving slicer 4 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_3/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000267484.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_4/slicer_25_1.png\n", "Saving slicer 2 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_4/slicer_25_2.png\n", "Saving slicer 3 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_4/slicer_25_3.png\n", "Saving slicer 4 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_4/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000267484.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_5/slicer_24_1.png\n", "Saving slicer 2 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_5/slicer_24_2.png\n", "Saving slicer 3 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_5/slicer_24_3.png\n", "Saving slicer 4 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_5/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000267484.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_6/slicer_17_1.png\n", "Saving slicer 2 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_6/slicer_17_2.png\n", "Saving slicer 3 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_6/slicer_17_3.png\n", "Saving slicer 4 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_6/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000267484.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_7/slicer_28_1.png\n", "Saving slicer 2 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_7/slicer_28_2.png\n", "Saving slicer 3 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_7/slicer_28_3.png\n", "Saving slicer 4 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_7/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000267484.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_8/slicer_23_1.png\n", "Saving slicer 2 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_8/slicer_23_2.png\n", "Saving slicer 3 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_8/slicer_23_3.png\n", "Saving slicer 4 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_8/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000267484.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_9/slicer_15_1.png\n", "Saving slicer 2 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_9/slicer_15_2.png\n", "Saving slicer 3 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_9/slicer_15_3.png\n", "Saving slicer 4 for patient 0000267484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267484_9/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000267484.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283926/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283926/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283926/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283926/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283926/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283926/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283926/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283926/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "After T1 ROI slices: [10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T2 ROI slices: [10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "27\n", "27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_1/slicer_31_1.png\n", "Saving slicer 2 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_1/slicer_31_2.png\n", "Saving slicer 3 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_1/slicer_31_3.png\n", "Saving slicer 4 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_1/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000283926.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_2/slicer_32_1.png\n", "Saving slicer 2 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_2/slicer_32_2.png\n", "Saving slicer 3 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_2/slicer_32_3.png\n", "Saving slicer 4 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_2/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000283926.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_3/slicer_30_1.png\n", "Saving slicer 2 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_3/slicer_30_2.png\n", "Saving slicer 3 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_3/slicer_30_3.png\n", "Saving slicer 4 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_3/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000283926.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_4/slicer_33_1.png\n", "Saving slicer 2 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_4/slicer_33_2.png\n", "Saving slicer 3 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_4/slicer_33_3.png\n", "Saving slicer 4 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_4/slicer_33_4.png\n", "Successfully saved 4 slices for patient 0000283926.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_5/slicer_29_1.png\n", "Saving slicer 2 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_5/slicer_29_2.png\n", "Saving slicer 3 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_5/slicer_29_3.png\n", "Saving slicer 4 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_5/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000283926.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_6/slicer_28_1.png\n", "Saving slicer 2 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_6/slicer_28_2.png\n", "Saving slicer 3 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_6/slicer_28_3.png\n", "Saving slicer 4 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_6/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000283926.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_7/slicer_21_1.png\n", "Saving slicer 2 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_7/slicer_21_2.png\n", "Saving slicer 3 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_7/slicer_21_3.png\n", "Saving slicer 4 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_7/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000283926.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_8/slicer_22_1.png\n", "Saving slicer 2 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_8/slicer_22_2.png\n", "Saving slicer 3 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_8/slicer_22_3.png\n", "Saving slicer 4 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_8/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000283926.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_9/slicer_23_1.png\n", "Saving slicer 2 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_9/slicer_23_2.png\n", "Saving slicer 3 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_9/slicer_23_3.png\n", "Saving slicer 4 for patient 0000283926 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283926_9/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000283926.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298873/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298873/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298873/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298873/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298873/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298873/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298873/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298873/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "19\n", "19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_1/slicer_28_1.png\n", "Saving slicer 2 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_1/slicer_28_2.png\n", "Saving slicer 3 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_1/slicer_28_3.png\n", "Saving slicer 4 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_1/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000298873.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_2/slicer_27_1.png\n", "Saving slicer 2 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_2/slicer_27_2.png\n", "Saving slicer 3 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_2/slicer_27_3.png\n", "Saving slicer 4 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_2/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000298873.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_3/slicer_26_1.png\n", "Saving slicer 2 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_3/slicer_26_2.png\n", "Saving slicer 3 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_3/slicer_26_3.png\n", "Saving slicer 4 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_3/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000298873.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_4/slicer_25_1.png\n", "Saving slicer 2 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_4/slicer_25_2.png\n", "Saving slicer 3 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_4/slicer_25_3.png\n", "Saving slicer 4 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_4/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000298873.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_5/slicer_29_1.png\n", "Saving slicer 2 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_5/slicer_29_2.png\n", "Saving slicer 3 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_5/slicer_29_3.png\n", "Saving slicer 4 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_5/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000298873.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [30] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [30] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_6/slicer_30_1.png\n", "Saving slicer 2 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_6/slicer_30_2.png\n", "Saving slicer 3 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_6/slicer_30_3.png\n", "Saving slicer 4 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_6/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000298873.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_7/slicer_24_1.png\n", "Saving slicer 2 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_7/slicer_24_2.png\n", "Saving slicer 3 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_7/slicer_24_3.png\n", "Saving slicer 4 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_7/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000298873.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_8/slicer_23_1.png\n", "Saving slicer 2 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_8/slicer_23_2.png\n", "Saving slicer 3 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_8/slicer_23_3.png\n", "Saving slicer 4 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_8/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000298873.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_9/slicer_22_1.png\n", "Saving slicer 2 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_9/slicer_22_2.png\n", "Saving slicer 3 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_9/slicer_22_3.png\n", "Saving slicer 4 for patient 0000298873 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298873_9/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000298873.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000247793/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000247793/mask_all.nii.gz\n", "Unexpected error: Exception thrown in SimpleITK ImageFileReader_Execute: /tmp/SimpleITK-build/ITK/Modules/IO/NIFTI/src/itkNiftiImageIO.cxx:2124:\n", "ITK ERROR: ITK only supports orthonormal direction cosines. No orthonormal definition found!\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000305452/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000305452/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000305452/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000305452/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305452/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305452/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305452/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305452/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 25, 26, 27, 28]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 25, 26, 27, 28]\n", "18\n", "18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_1/slicer_19_1.png\n", "Saving slicer 2 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_1/slicer_19_2.png\n", "Saving slicer 3 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_1/slicer_19_3.png\n", "Saving slicer 4 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_1/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000305452.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_2/slicer_18_1.png\n", "Saving slicer 2 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_2/slicer_18_2.png\n", "Saving slicer 3 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_2/slicer_18_3.png\n", "Saving slicer 4 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_2/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000305452.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_3/slicer_16_1.png\n", "Saving slicer 2 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_3/slicer_16_2.png\n", "Saving slicer 3 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_3/slicer_16_3.png\n", "Saving slicer 4 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_3/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000305452.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_4/slicer_17_1.png\n", "Saving slicer 2 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_4/slicer_17_2.png\n", "Saving slicer 3 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_4/slicer_17_3.png\n", "Saving slicer 4 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_4/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000305452.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_5/slicer_15_1.png\n", "Saving slicer 2 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_5/slicer_15_2.png\n", "Saving slicer 3 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_5/slicer_15_3.png\n", "Saving slicer 4 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_5/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000305452.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_6/slicer_28_1.png\n", "Saving slicer 2 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_6/slicer_28_2.png\n", "Saving slicer 3 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_6/slicer_28_3.png\n", "Saving slicer 4 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_6/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000305452.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_7/slicer_20_1.png\n", "Saving slicer 2 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_7/slicer_20_2.png\n", "Saving slicer 3 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_7/slicer_20_3.png\n", "Saving slicer 4 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_7/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000305452.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_8/slicer_27_1.png\n", "Saving slicer 2 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_8/slicer_27_2.png\n", "Saving slicer 3 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_8/slicer_27_3.png\n", "Saving slicer 4 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_8/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000305452.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_9/slicer_14_1.png\n", "Saving slicer 2 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_9/slicer_14_2.png\n", "Saving slicer 3 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_9/slicer_14_3.png\n", "Saving slicer 4 for patient 0000305452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000305452_9/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000305452.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280323/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280323/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280323/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280323/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280323/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280323/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280323/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280323/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [18, 19, 20, 21, 22, 23, 24, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [18, 19, 20, 21, 22, 23, 24, 26, 27, 28, 29, 30]\n", "18\n", "18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_1/slicer_29_1.png\n", "Saving slicer 2 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_1/slicer_29_2.png\n", "Saving slicer 3 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_1/slicer_29_3.png\n", "Saving slicer 4 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_1/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000280323.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_2/slicer_28_1.png\n", "Saving slicer 2 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_2/slicer_28_2.png\n", "Saving slicer 3 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_2/slicer_28_3.png\n", "Saving slicer 4 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_2/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000280323.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_3/slicer_30_1.png\n", "Saving slicer 2 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_3/slicer_30_2.png\n", "Saving slicer 3 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_3/slicer_30_3.png\n", "Saving slicer 4 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_3/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000280323.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_4/slicer_27_1.png\n", "Saving slicer 2 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_4/slicer_27_2.png\n", "Saving slicer 3 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_4/slicer_27_3.png\n", "Saving slicer 4 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_4/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000280323.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_5/slicer_20_1.png\n", "Saving slicer 2 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_5/slicer_20_2.png\n", "Saving slicer 3 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_5/slicer_20_3.png\n", "Saving slicer 4 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_5/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000280323.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_6/slicer_26_1.png\n", "Saving slicer 2 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_6/slicer_26_2.png\n", "Saving slicer 3 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_6/slicer_26_3.png\n", "Saving slicer 4 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_6/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000280323.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_7/slicer_19_1.png\n", "Saving slicer 2 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_7/slicer_19_2.png\n", "Saving slicer 3 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_7/slicer_19_3.png\n", "Saving slicer 4 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_7/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000280323.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_8/slicer_21_1.png\n", "Saving slicer 2 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_8/slicer_21_2.png\n", "Saving slicer 3 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_8/slicer_21_3.png\n", "Saving slicer 4 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_8/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000280323.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_9/slicer_22_1.png\n", "Saving slicer 2 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_9/slicer_22_2.png\n", "Saving slicer 3 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_9/slicer_22_3.png\n", "Saving slicer 4 for patient 0000280323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000280323_9/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000280323.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000258637/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000258637/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000258637/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000258637/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258637/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258637/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258637/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258637/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [7, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [22, 23, 24, 25, 26, 27]\n", "18\n", "18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_1/slicer_23_1.png\n", "Saving slicer 2 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_1/slicer_23_2.png\n", "Saving slicer 3 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_1/slicer_23_3.png\n", "Saving slicer 4 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_1/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000258637.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_2/slicer_24_1.png\n", "Saving slicer 2 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_2/slicer_24_2.png\n", "Saving slicer 3 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_2/slicer_24_3.png\n", "Saving slicer 4 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_2/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000258637.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_3/slicer_25_1.png\n", "Saving slicer 2 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_3/slicer_25_2.png\n", "Saving slicer 3 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_3/slicer_25_3.png\n", "Saving slicer 4 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_3/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000258637.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_4/slicer_26_1.png\n", "Saving slicer 2 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_4/slicer_26_2.png\n", "Saving slicer 3 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_4/slicer_26_3.png\n", "Saving slicer 4 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_4/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000258637.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_5/slicer_22_1.png\n", "Saving slicer 2 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_5/slicer_22_2.png\n", "Saving slicer 3 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_5/slicer_22_3.png\n", "Saving slicer 4 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_5/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000258637.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_6/slicer_27_1.png\n", "Saving slicer 2 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_6/slicer_27_2.png\n", "Saving slicer 3 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_6/slicer_27_3.png\n", "Saving slicer 4 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_6/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000258637.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_7/slicer_21_1.png\n", "Saving slicer 2 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_7/slicer_21_2.png\n", "Saving slicer 3 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_7/slicer_21_3.png\n", "Saving slicer 4 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_7/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000258637.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [28] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [28] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_8/slicer_28_1.png\n", "Saving slicer 2 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_8/slicer_28_2.png\n", "Saving slicer 3 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_8/slicer_28_3.png\n", "Saving slicer 4 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_8/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000258637.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_9/slicer_19_1.png\n", "Saving slicer 2 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_9/slicer_19_2.png\n", "Saving slicer 3 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_9/slicer_19_3.png\n", "Saving slicer 4 for patient 0000258637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000258637_9/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000258637.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000250277/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000250277/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000250277/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000250277/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250277/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250277/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250277/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250277/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "18\n", "18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_1/slicer_27_1.png\n", "Saving slicer 2 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_1/slicer_27_2.png\n", "Saving slicer 3 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_1/slicer_27_3.png\n", "Saving slicer 4 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_1/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000250277.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_2/slicer_28_1.png\n", "Saving slicer 2 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_2/slicer_28_2.png\n", "Saving slicer 3 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_2/slicer_28_3.png\n", "Saving slicer 4 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_2/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000250277.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_3/slicer_30_1.png\n", "Saving slicer 2 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_3/slicer_30_2.png\n", "Saving slicer 3 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_3/slicer_30_3.png\n", "Saving slicer 4 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_3/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000250277.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_4/slicer_29_1.png\n", "Saving slicer 2 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_4/slicer_29_2.png\n", "Saving slicer 3 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_4/slicer_29_3.png\n", "Saving slicer 4 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_4/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000250277.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_5/slicer_26_1.png\n", "Saving slicer 2 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_5/slicer_26_2.png\n", "Saving slicer 3 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_5/slicer_26_3.png\n", "Saving slicer 4 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_5/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000250277.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_6/slicer_25_1.png\n", "Saving slicer 2 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_6/slicer_25_2.png\n", "Saving slicer 3 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_6/slicer_25_3.png\n", "Saving slicer 4 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_6/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000250277.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_7/slicer_32_1.png\n", "Saving slicer 2 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_7/slicer_32_2.png\n", "Saving slicer 3 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_7/slicer_32_3.png\n", "Saving slicer 4 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_7/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000250277.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_8/slicer_31_1.png\n", "Saving slicer 2 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_8/slicer_31_2.png\n", "Saving slicer 3 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_8/slicer_31_3.png\n", "Saving slicer 4 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_8/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000250277.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_9/slicer_24_1.png\n", "Saving slicer 2 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_9/slicer_24_2.png\n", "Saving slicer 3 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_9/slicer_24_3.png\n", "Saving slicer 4 for patient 0000250277 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000250277_9/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000250277.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292626/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292626/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292626/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292626/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292626/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292626/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292626/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292626/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "28\n", "28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_1/slicer_16_1.png\n", "Saving slicer 2 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_1/slicer_16_2.png\n", "Saving slicer 3 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_1/slicer_16_3.png\n", "Saving slicer 4 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_1/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000292626.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_2/slicer_17_1.png\n", "Saving slicer 2 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_2/slicer_17_2.png\n", "Saving slicer 3 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_2/slicer_17_3.png\n", "Saving slicer 4 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_2/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000292626.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_3/slicer_18_1.png\n", "Saving slicer 2 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_3/slicer_18_2.png\n", "Saving slicer 3 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_3/slicer_18_3.png\n", "Saving slicer 4 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_3/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000292626.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_4/slicer_19_1.png\n", "Saving slicer 2 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_4/slicer_19_2.png\n", "Saving slicer 3 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_4/slicer_19_3.png\n", "Saving slicer 4 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_4/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000292626.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_5/slicer_15_1.png\n", "Saving slicer 2 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_5/slicer_15_2.png\n", "Saving slicer 3 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_5/slicer_15_3.png\n", "Saving slicer 4 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_5/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000292626.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_6/slicer_10_1.png\n", "Saving slicer 2 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_6/slicer_10_2.png\n", "Saving slicer 3 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_6/slicer_10_3.png\n", "Saving slicer 4 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_6/slicer_10_4.png\n", "Successfully saved 4 slices for patient 0000292626.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_7/slicer_20_1.png\n", "Saving slicer 2 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_7/slicer_20_2.png\n", "Saving slicer 3 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_7/slicer_20_3.png\n", "Saving slicer 4 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_7/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000292626.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_8/slicer_14_1.png\n", "Saving slicer 2 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_8/slicer_14_2.png\n", "Saving slicer 3 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_8/slicer_14_3.png\n", "Saving slicer 4 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_8/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000292626.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_9/slicer_9_1.png\n", "Saving slicer 2 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_9/slicer_9_2.png\n", "Saving slicer 3 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_9/slicer_9_3.png\n", "Saving slicer 4 for patient 0000292626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000292626_9/slicer_9_4.png\n", "Successfully saved 4 slices for patient 0000292626.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000273661/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000273661/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000273661/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000273661/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273661/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273661/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273661/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273661/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23]\n", "Before T2 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23]\n", "After T1 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23]\n", "After T2 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23]\n", "24\n", "24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_1/slicer_12_1.png\n", "Saving slicer 2 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_1/slicer_12_2.png\n", "Saving slicer 3 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_1/slicer_12_3.png\n", "Saving slicer 4 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_1/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000273661.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_2/slicer_13_1.png\n", "Saving slicer 2 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_2/slicer_13_2.png\n", "Saving slicer 3 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_2/slicer_13_3.png\n", "Saving slicer 4 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_2/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000273661.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_3/slicer_11_1.png\n", "Saving slicer 2 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_3/slicer_11_2.png\n", "Saving slicer 3 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_3/slicer_11_3.png\n", "Saving slicer 4 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_3/slicer_11_4.png\n", "Successfully saved 4 slices for patient 0000273661.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_4/slicer_14_1.png\n", "Saving slicer 2 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_4/slicer_14_2.png\n", "Saving slicer 3 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_4/slicer_14_3.png\n", "Saving slicer 4 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_4/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000273661.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_5/slicer_1_1.png\n", "Saving slicer 2 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_5/slicer_1_2.png\n", "Saving slicer 3 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_5/slicer_1_3.png\n", "Saving slicer 4 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_5/slicer_1_4.png\n", "Successfully saved 4 slices for patient 0000273661.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_6/slicer_10_1.png\n", "Saving slicer 2 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_6/slicer_10_2.png\n", "Saving slicer 3 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_6/slicer_10_3.png\n", "Saving slicer 4 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_6/slicer_10_4.png\n", "Successfully saved 4 slices for patient 0000273661.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_7/slicer_2_1.png\n", "Saving slicer 2 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_7/slicer_2_2.png\n", "Saving slicer 3 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_7/slicer_2_3.png\n", "Saving slicer 4 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_7/slicer_2_4.png\n", "Successfully saved 4 slices for patient 0000273661.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_8/slicer_9_1.png\n", "Saving slicer 2 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_8/slicer_9_2.png\n", "Saving slicer 3 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_8/slicer_9_3.png\n", "Saving slicer 4 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_8/slicer_9_4.png\n", "Successfully saved 4 slices for patient 0000273661.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_9/slicer_3_1.png\n", "Saving slicer 2 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_9/slicer_3_2.png\n", "Saving slicer 3 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_9/slicer_3_3.png\n", "Saving slicer 4 for patient 0000273661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273661_9/slicer_3_4.png\n", "Successfully saved 4 slices for patient 0000273661.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284734/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284734/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284734/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284734/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284734/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284734/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284734/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284734/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 24, 25, 26, 27, 28, 29]\n", "27\n", "27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_1/slicer_16_1.png\n", "Saving slicer 2 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_1/slicer_16_2.png\n", "Saving slicer 3 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_1/slicer_16_3.png\n", "Saving slicer 4 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_1/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000284734.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_2/slicer_17_1.png\n", "Saving slicer 2 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_2/slicer_17_2.png\n", "Saving slicer 3 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_2/slicer_17_3.png\n", "Saving slicer 4 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_2/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000284734.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_3/slicer_15_1.png\n", "Saving slicer 2 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_3/slicer_15_2.png\n", "Saving slicer 3 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_3/slicer_15_3.png\n", "Saving slicer 4 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_3/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000284734.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_4/slicer_14_1.png\n", "Saving slicer 2 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_4/slicer_14_2.png\n", "Saving slicer 3 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_4/slicer_14_3.png\n", "Saving slicer 4 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_4/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000284734.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_5/slicer_18_1.png\n", "Saving slicer 2 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_5/slicer_18_2.png\n", "Saving slicer 3 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_5/slicer_18_3.png\n", "Saving slicer 4 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_5/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000284734.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_6/slicer_13_1.png\n", "Saving slicer 2 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_6/slicer_13_2.png\n", "Saving slicer 3 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_6/slicer_13_3.png\n", "Saving slicer 4 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_6/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000284734.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_7/slicer_12_1.png\n", "Saving slicer 2 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_7/slicer_12_2.png\n", "Saving slicer 3 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_7/slicer_12_3.png\n", "Saving slicer 4 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_7/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000284734.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_8/slicer_26_1.png\n", "Saving slicer 2 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_8/slicer_26_2.png\n", "Saving slicer 3 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_8/slicer_26_3.png\n", "Saving slicer 4 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_8/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000284734.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_9/slicer_28_1.png\n", "Saving slicer 2 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_9/slicer_28_2.png\n", "Saving slicer 3 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_9/slicer_28_3.png\n", "Saving slicer 4 for patient 0000284734 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284734_9/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000284734.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000301982/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000301982/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000301982/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000301982/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301982/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301982/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301982/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301982/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 23, 24, 25]\n", "After T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 23, 24, 25]\n", "20\n", "20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_1/slicer_13_1.png\n", "Saving slicer 2 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_1/slicer_13_2.png\n", "Saving slicer 3 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_1/slicer_13_3.png\n", "Saving slicer 4 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_1/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000301982.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_2/slicer_14_1.png\n", "Saving slicer 2 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_2/slicer_14_2.png\n", "Saving slicer 3 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_2/slicer_14_3.png\n", "Saving slicer 4 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_2/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000301982.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_3/slicer_12_1.png\n", "Saving slicer 2 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_3/slicer_12_2.png\n", "Saving slicer 3 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_3/slicer_12_3.png\n", "Saving slicer 4 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_3/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000301982.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_4/slicer_15_1.png\n", "Saving slicer 2 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_4/slicer_15_2.png\n", "Saving slicer 3 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_4/slicer_15_3.png\n", "Saving slicer 4 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_4/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000301982.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_5/slicer_11_1.png\n", "Saving slicer 2 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_5/slicer_11_2.png\n", "Saving slicer 3 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_5/slicer_11_3.png\n", "Saving slicer 4 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_5/slicer_11_4.png\n", "Successfully saved 4 slices for patient 0000301982.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_6/slicer_10_1.png\n", "Saving slicer 2 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_6/slicer_10_2.png\n", "Saving slicer 3 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_6/slicer_10_3.png\n", "Saving slicer 4 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_6/slicer_10_4.png\n", "Successfully saved 4 slices for patient 0000301982.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_7/slicer_24_1.png\n", "Saving slicer 2 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_7/slicer_24_2.png\n", "Saving slicer 3 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_7/slicer_24_3.png\n", "Saving slicer 4 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_7/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000301982.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_8/slicer_9_1.png\n", "Saving slicer 2 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_8/slicer_9_2.png\n", "Saving slicer 3 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_8/slicer_9_3.png\n", "Saving slicer 4 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_8/slicer_9_4.png\n", "Successfully saved 4 slices for patient 0000301982.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_9/slicer_23_1.png\n", "Saving slicer 2 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_9/slicer_23_2.png\n", "Saving slicer 3 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_9/slicer_23_3.png\n", "Saving slicer 4 for patient 0000301982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000301982_9/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000301982.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284687/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284687/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284687/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284687/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284687/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284687/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284687/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284687/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "19\n", "19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_1/slicer_29_1.png\n", "Saving slicer 2 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_1/slicer_29_2.png\n", "Saving slicer 3 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_1/slicer_29_3.png\n", "Saving slicer 4 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_1/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000284687.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_2/slicer_30_1.png\n", "Saving slicer 2 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_2/slicer_30_2.png\n", "Saving slicer 3 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_2/slicer_30_3.png\n", "Saving slicer 4 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_2/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000284687.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_3/slicer_27_1.png\n", "Saving slicer 2 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_3/slicer_27_2.png\n", "Saving slicer 3 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_3/slicer_27_3.png\n", "Saving slicer 4 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_3/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000284687.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_4/slicer_28_1.png\n", "Saving slicer 2 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_4/slicer_28_2.png\n", "Saving slicer 3 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_4/slicer_28_3.png\n", "Saving slicer 4 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_4/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000284687.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_5/slicer_31_1.png\n", "Saving slicer 2 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_5/slicer_31_2.png\n", "Saving slicer 3 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_5/slicer_31_3.png\n", "Saving slicer 4 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_5/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000284687.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_6/slicer_26_1.png\n", "Saving slicer 2 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_6/slicer_26_2.png\n", "Saving slicer 3 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_6/slicer_26_3.png\n", "Saving slicer 4 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_6/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000284687.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_7/slicer_32_1.png\n", "Saving slicer 2 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_7/slicer_32_2.png\n", "Saving slicer 3 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_7/slicer_32_3.png\n", "Saving slicer 4 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_7/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000284687.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_8/slicer_25_1.png\n", "Saving slicer 2 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_8/slicer_25_2.png\n", "Saving slicer 3 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_8/slicer_25_3.png\n", "Saving slicer 4 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_8/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000284687.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [33] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [33] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_9/slicer_33_1.png\n", "Saving slicer 2 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_9/slicer_33_2.png\n", "Saving slicer 3 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_9/slicer_33_3.png\n", "Saving slicer 4 for patient 0000284687 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000284687_9/slicer_33_4.png\n", "Successfully saved 4 slices for patient 0000284687.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249692/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249692/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249692/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249692/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249692/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249692/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249692/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249692/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "19\n", "19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_1/slicer_28_1.png\n", "Saving slicer 2 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_1/slicer_28_2.png\n", "Saving slicer 3 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_1/slicer_28_3.png\n", "Saving slicer 4 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_1/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000249692.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_2/slicer_29_1.png\n", "Saving slicer 2 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_2/slicer_29_2.png\n", "Saving slicer 3 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_2/slicer_29_3.png\n", "Saving slicer 4 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_2/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000249692.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [31] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [31] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_3/slicer_31_1.png\n", "Saving slicer 2 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_3/slicer_31_2.png\n", "Saving slicer 3 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_3/slicer_31_3.png\n", "Saving slicer 4 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_3/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000249692.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_4/slicer_27_1.png\n", "Saving slicer 2 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_4/slicer_27_2.png\n", "Saving slicer 3 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_4/slicer_27_3.png\n", "Saving slicer 4 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_4/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000249692.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_5/slicer_26_1.png\n", "Saving slicer 2 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_5/slicer_26_2.png\n", "Saving slicer 3 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_5/slicer_26_3.png\n", "Saving slicer 4 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_5/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000249692.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_6/slicer_25_1.png\n", "Saving slicer 2 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_6/slicer_25_2.png\n", "Saving slicer 3 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_6/slicer_25_3.png\n", "Saving slicer 4 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_6/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000249692.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_7/slicer_17_1.png\n", "Saving slicer 2 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_7/slicer_17_2.png\n", "Saving slicer 3 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_7/slicer_17_3.png\n", "Saving slicer 4 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_7/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000249692.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_8/slicer_16_1.png\n", "Saving slicer 2 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_8/slicer_16_2.png\n", "Saving slicer 3 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_8/slicer_16_3.png\n", "Saving slicer 4 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_8/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000249692.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_9/slicer_24_1.png\n", "Saving slicer 2 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_9/slicer_24_2.png\n", "Saving slicer 3 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_9/slicer_24_3.png\n", "Saving slicer 4 for patient 0000249692 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249692_9/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000249692.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279167/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279167/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279167/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279167/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279167/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279167/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279167/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279167/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [16, 17, 18, 19, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31]\n", "13\n", "13\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_1/slicer_28_1.png\n", "Saving slicer 2 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_1/slicer_28_2.png\n", "Saving slicer 3 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_1/slicer_28_3.png\n", "Saving slicer 4 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_1/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000279167.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_2/slicer_29_1.png\n", "Saving slicer 2 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_2/slicer_29_2.png\n", "Saving slicer 3 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_2/slicer_29_3.png\n", "Saving slicer 4 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_2/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000279167.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_3/slicer_27_1.png\n", "Saving slicer 2 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_3/slicer_27_2.png\n", "Saving slicer 3 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_3/slicer_27_3.png\n", "Saving slicer 4 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_3/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000279167.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_4/slicer_26_1.png\n", "Saving slicer 2 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_4/slicer_26_2.png\n", "Saving slicer 3 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_4/slicer_26_3.png\n", "Saving slicer 4 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_4/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000279167.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_5/slicer_30_1.png\n", "Saving slicer 2 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_5/slicer_30_2.png\n", "Saving slicer 3 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_5/slicer_30_3.png\n", "Saving slicer 4 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_5/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000279167.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_6/slicer_32_1.png\n", "Saving slicer 2 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_6/slicer_32_2.png\n", "Saving slicer 3 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_6/slicer_32_3.png\n", "Saving slicer 4 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_6/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000279167.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_7/slicer_31_1.png\n", "Saving slicer 2 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_7/slicer_31_2.png\n", "Saving slicer 3 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_7/slicer_31_3.png\n", "Saving slicer 4 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_7/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000279167.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_8/slicer_25_1.png\n", "Saving slicer 2 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_8/slicer_25_2.png\n", "Saving slicer 3 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_8/slicer_25_3.png\n", "Saving slicer 4 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_8/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000279167.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [33] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [33] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_9/slicer_33_1.png\n", "Saving slicer 2 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_9/slicer_33_2.png\n", "Saving slicer 3 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_9/slicer_33_3.png\n", "Saving slicer 4 for patient 0000279167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279167_9/slicer_33_4.png\n", "Successfully saved 4 slices for patient 0000279167.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000237773/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000237773/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000237773/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000237773/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237773/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237773/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237773/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237773/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "14\n", "14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_1/slicer_23_1.png\n", "Saving slicer 2 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_1/slicer_23_2.png\n", "Saving slicer 3 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_1/slicer_23_3.png\n", "Saving slicer 4 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_1/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000237773.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_2/slicer_24_1.png\n", "Saving slicer 2 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_2/slicer_24_2.png\n", "Saving slicer 3 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_2/slicer_24_3.png\n", "Saving slicer 4 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_2/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000237773.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_3/slicer_25_1.png\n", "Saving slicer 2 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_3/slicer_25_2.png\n", "Saving slicer 3 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_3/slicer_25_3.png\n", "Saving slicer 4 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_3/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000237773.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_4/slicer_22_1.png\n", "Saving slicer 2 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_4/slicer_22_2.png\n", "Saving slicer 3 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_4/slicer_22_3.png\n", "Saving slicer 4 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_4/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000237773.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_5/slicer_21_1.png\n", "Saving slicer 2 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_5/slicer_21_2.png\n", "Saving slicer 3 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_5/slicer_21_3.png\n", "Saving slicer 4 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_5/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000237773.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_6/slicer_26_1.png\n", "Saving slicer 2 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_6/slicer_26_2.png\n", "Saving slicer 3 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_6/slicer_26_3.png\n", "Saving slicer 4 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_6/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000237773.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_7/slicer_20_1.png\n", "Saving slicer 2 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_7/slicer_20_2.png\n", "Saving slicer 3 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_7/slicer_20_3.png\n", "Saving slicer 4 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_7/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000237773.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_8/slicer_16_1.png\n", "Saving slicer 2 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_8/slicer_16_2.png\n", "Saving slicer 3 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_8/slicer_16_3.png\n", "Saving slicer 4 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_8/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000237773.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_9/slicer_19_1.png\n", "Saving slicer 2 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_9/slicer_19_2.png\n", "Saving slicer 3 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_9/slicer_19_3.png\n", "Saving slicer 4 for patient 0000237773 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237773_9/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000237773.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300298/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300298/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300298/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300298/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300298/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300298/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300298/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300298/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 11, 12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [8, 9, 11, 12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "21\n", "21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_1/slicer_23_1.png\n", "Saving slicer 2 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_1/slicer_23_2.png\n", "Saving slicer 3 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_1/slicer_23_3.png\n", "Saving slicer 4 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_1/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000300298.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_2/slicer_25_1.png\n", "Saving slicer 2 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_2/slicer_25_2.png\n", "Saving slicer 3 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_2/slicer_25_3.png\n", "Saving slicer 4 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_2/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000300298.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_3/slicer_24_1.png\n", "Saving slicer 2 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_3/slicer_24_2.png\n", "Saving slicer 3 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_3/slicer_24_3.png\n", "Saving slicer 4 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_3/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000300298.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_4/slicer_26_1.png\n", "Saving slicer 2 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_4/slicer_26_2.png\n", "Saving slicer 3 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_4/slicer_26_3.png\n", "Saving slicer 4 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_4/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000300298.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_5/slicer_27_1.png\n", "Saving slicer 2 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_5/slicer_27_2.png\n", "Saving slicer 3 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_5/slicer_27_3.png\n", "Saving slicer 4 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_5/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000300298.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_6/slicer_22_1.png\n", "Saving slicer 2 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_6/slicer_22_2.png\n", "Saving slicer 3 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_6/slicer_22_3.png\n", "Saving slicer 4 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_6/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000300298.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_7/slicer_28_1.png\n", "Saving slicer 2 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_7/slicer_28_2.png\n", "Saving slicer 3 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_7/slicer_28_3.png\n", "Saving slicer 4 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_7/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000300298.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_8/slicer_29_1.png\n", "Saving slicer 2 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_8/slicer_29_2.png\n", "Saving slicer 3 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_8/slicer_29_3.png\n", "Saving slicer 4 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_8/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000300298.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_9/slicer_30_1.png\n", "Saving slicer 2 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_9/slicer_30_2.png\n", "Saving slicer 3 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_9/slicer_30_3.png\n", "Saving slicer 4 for patient 0000300298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000300298_9/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000300298.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000241900/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000241900/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000241900/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000241900/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241900/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241900/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241900/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241900/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 25, 26, 27, 28, 29]\n", "26\n", "26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_1/slicer_17_1.png\n", "Saving slicer 2 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_1/slicer_17_2.png\n", "Saving slicer 3 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_1/slicer_17_3.png\n", "Saving slicer 4 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_1/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000241900.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_2/slicer_16_1.png\n", "Saving slicer 2 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_2/slicer_16_2.png\n", "Saving slicer 3 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_2/slicer_16_3.png\n", "Saving slicer 4 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_2/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000241900.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_3/slicer_18_1.png\n", "Saving slicer 2 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_3/slicer_18_2.png\n", "Saving slicer 3 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_3/slicer_18_3.png\n", "Saving slicer 4 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_3/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000241900.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_4/slicer_15_1.png\n", "Saving slicer 2 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_4/slicer_15_2.png\n", "Saving slicer 3 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_4/slicer_15_3.png\n", "Saving slicer 4 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_4/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000241900.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_5/slicer_19_1.png\n", "Saving slicer 2 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_5/slicer_19_2.png\n", "Saving slicer 3 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_5/slicer_19_3.png\n", "Saving slicer 4 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_5/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000241900.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_6/slicer_28_1.png\n", "Saving slicer 2 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_6/slicer_28_2.png\n", "Saving slicer 3 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_6/slicer_28_3.png\n", "Saving slicer 4 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_6/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000241900.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_7/slicer_14_1.png\n", "Saving slicer 2 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_7/slicer_14_2.png\n", "Saving slicer 3 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_7/slicer_14_3.png\n", "Saving slicer 4 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_7/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000241900.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_8/slicer_20_1.png\n", "Saving slicer 2 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_8/slicer_20_2.png\n", "Saving slicer 3 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_8/slicer_20_3.png\n", "Saving slicer 4 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_8/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000241900.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_9/slicer_13_1.png\n", "Saving slicer 2 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_9/slicer_13_2.png\n", "Saving slicer 3 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_9/slicer_13_3.png\n", "Saving slicer 4 for patient 0000241900 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000241900_9/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000241900.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279724/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279724/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279724/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279724/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279724/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279724/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279724/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279724/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "20\n", "20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_1/slicer_27_1.png\n", "Saving slicer 2 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_1/slicer_27_2.png\n", "Saving slicer 3 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_1/slicer_27_3.png\n", "Saving slicer 4 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_1/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000279724.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_2/slicer_28_1.png\n", "Saving slicer 2 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_2/slicer_28_2.png\n", "Saving slicer 3 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_2/slicer_28_3.png\n", "Saving slicer 4 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_2/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000279724.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_3/slicer_29_1.png\n", "Saving slicer 2 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_3/slicer_29_2.png\n", "Saving slicer 3 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_3/slicer_29_3.png\n", "Saving slicer 4 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_3/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000279724.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_4/slicer_26_1.png\n", "Saving slicer 2 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_4/slicer_26_2.png\n", "Saving slicer 3 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_4/slicer_26_3.png\n", "Saving slicer 4 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_4/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000279724.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_5/slicer_20_1.png\n", "Saving slicer 2 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_5/slicer_20_2.png\n", "Saving slicer 3 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_5/slicer_20_3.png\n", "Saving slicer 4 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_5/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000279724.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_6/slicer_21_1.png\n", "Saving slicer 2 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_6/slicer_21_2.png\n", "Saving slicer 3 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_6/slicer_21_3.png\n", "Saving slicer 4 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_6/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000279724.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [30] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [30] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_7/slicer_30_1.png\n", "Saving slicer 2 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_7/slicer_30_2.png\n", "Saving slicer 3 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_7/slicer_30_3.png\n", "Saving slicer 4 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_7/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000279724.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_8/slicer_25_1.png\n", "Saving slicer 2 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_8/slicer_25_2.png\n", "Saving slicer 3 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_8/slicer_25_3.png\n", "Saving slicer 4 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_8/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000279724.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_9/slicer_19_1.png\n", "Saving slicer 2 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_9/slicer_19_2.png\n", "Saving slicer 3 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_9/slicer_19_3.png\n", "Saving slicer 4 for patient 0000279724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279724_9/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000279724.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000234661/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000234661/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000234661/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000234661/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000234661/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000234661/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000234661/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000234661/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [4, 5, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [10, 11, 12, 15, 16, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [10, 11, 12, 15, 16, 22, 23, 24, 25, 26]\n", "23\n", "23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_1/slicer_24_1.png\n", "Saving slicer 2 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_1/slicer_24_2.png\n", "Saving slicer 3 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_1/slicer_24_3.png\n", "Saving slicer 4 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_1/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000234661.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_2/slicer_23_1.png\n", "Saving slicer 2 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_2/slicer_23_2.png\n", "Saving slicer 3 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_2/slicer_23_3.png\n", "Saving slicer 4 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_2/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000234661.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_3/slicer_25_1.png\n", "Saving slicer 2 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_3/slicer_25_2.png\n", "Saving slicer 3 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_3/slicer_25_3.png\n", "Saving slicer 4 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_3/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000234661.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_4/slicer_22_1.png\n", "Saving slicer 2 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_4/slicer_22_2.png\n", "Saving slicer 3 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_4/slicer_22_3.png\n", "Saving slicer 4 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_4/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000234661.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_5/slicer_26_1.png\n", "Saving slicer 2 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_5/slicer_26_2.png\n", "Saving slicer 3 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_5/slicer_26_3.png\n", "Saving slicer 4 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_5/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000234661.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [27] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [27] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_6/slicer_27_1.png\n", "Saving slicer 2 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_6/slicer_27_2.png\n", "Saving slicer 3 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_6/slicer_27_3.png\n", "Saving slicer 4 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_6/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000234661.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [28] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [28] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_7/slicer_28_1.png\n", "Saving slicer 2 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_7/slicer_28_2.png\n", "Saving slicer 3 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_7/slicer_28_3.png\n", "Saving slicer 4 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_7/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000234661.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_8/slicer_21_1.png\n", "Saving slicer 2 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_8/slicer_21_2.png\n", "Saving slicer 3 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_8/slicer_21_3.png\n", "Saving slicer 4 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_8/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000234661.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_9/slicer_17_1.png\n", "Saving slicer 2 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_9/slicer_17_2.png\n", "Saving slicer 3 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_9/slicer_17_3.png\n", "Saving slicer 4 for patient 0000234661 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234661_9/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000234661.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000232724/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000232724/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000232724/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000232724/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000232724/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000232724/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000232724/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000232724/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "18\n", "18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_1/slicer_26_1.png\n", "Saving slicer 2 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_1/slicer_26_2.png\n", "Saving slicer 3 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_1/slicer_26_3.png\n", "Saving slicer 4 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_1/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000232724.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_2/slicer_28_1.png\n", "Saving slicer 2 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_2/slicer_28_2.png\n", "Saving slicer 3 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_2/slicer_28_3.png\n", "Saving slicer 4 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_2/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000232724.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_3/slicer_27_1.png\n", "Saving slicer 2 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_3/slicer_27_2.png\n", "Saving slicer 3 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_3/slicer_27_3.png\n", "Saving slicer 4 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_3/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000232724.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_4/slicer_29_1.png\n", "Saving slicer 2 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_4/slicer_29_2.png\n", "Saving slicer 3 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_4/slicer_29_3.png\n", "Saving slicer 4 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_4/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000232724.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_5/slicer_25_1.png\n", "Saving slicer 2 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_5/slicer_25_2.png\n", "Saving slicer 3 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_5/slicer_25_3.png\n", "Saving slicer 4 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_5/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000232724.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_6/slicer_24_1.png\n", "Saving slicer 2 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_6/slicer_24_2.png\n", "Saving slicer 3 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_6/slicer_24_3.png\n", "Saving slicer 4 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_6/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000232724.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_7/slicer_30_1.png\n", "Saving slicer 2 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_7/slicer_30_2.png\n", "Saving slicer 3 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_7/slicer_30_3.png\n", "Saving slicer 4 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_7/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000232724.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_8/slicer_23_1.png\n", "Saving slicer 2 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_8/slicer_23_2.png\n", "Saving slicer 3 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_8/slicer_23_3.png\n", "Saving slicer 4 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_8/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000232724.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_9/slicer_22_1.png\n", "Saving slicer 2 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_9/slicer_22_2.png\n", "Saving slicer 3 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_9/slicer_22_3.png\n", "Saving slicer 4 for patient 0000232724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000232724_9/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000232724.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255984/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255984/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255984/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255984/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255984/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255984/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255984/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255984/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [3, 4, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "23\n", "23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_1/slicer_24_1.png\n", "Saving slicer 2 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_1/slicer_24_2.png\n", "Saving slicer 3 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_1/slicer_24_3.png\n", "Saving slicer 4 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_1/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000255984.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_2/slicer_25_1.png\n", "Saving slicer 2 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_2/slicer_25_2.png\n", "Saving slicer 3 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_2/slicer_25_3.png\n", "Saving slicer 4 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_2/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000255984.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_3/slicer_26_1.png\n", "Saving slicer 2 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_3/slicer_26_2.png\n", "Saving slicer 3 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_3/slicer_26_3.png\n", "Saving slicer 4 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_3/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000255984.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_4/slicer_27_1.png\n", "Saving slicer 2 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_4/slicer_27_2.png\n", "Saving slicer 3 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_4/slicer_27_3.png\n", "Saving slicer 4 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_4/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000255984.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_5/slicer_28_1.png\n", "Saving slicer 2 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_5/slicer_28_2.png\n", "Saving slicer 3 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_5/slicer_28_3.png\n", "Saving slicer 4 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_5/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000255984.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_6/slicer_20_1.png\n", "Saving slicer 2 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_6/slicer_20_2.png\n", "Saving slicer 3 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_6/slicer_20_3.png\n", "Saving slicer 4 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_6/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000255984.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_7/slicer_29_1.png\n", "Saving slicer 2 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_7/slicer_29_2.png\n", "Saving slicer 3 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_7/slicer_29_3.png\n", "Saving slicer 4 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_7/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000255984.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_8/slicer_23_1.png\n", "Saving slicer 2 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_8/slicer_23_2.png\n", "Saving slicer 3 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_8/slicer_23_3.png\n", "Saving slicer 4 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_8/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000255984.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_9/slicer_19_1.png\n", "Saving slicer 2 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_9/slicer_19_2.png\n", "Saving slicer 3 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_9/slicer_19_3.png\n", "Saving slicer 4 for patient 0000255984 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000255984_9/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000255984.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000273070/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000273070/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000273070/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000273070/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273070/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273070/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273070/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273070/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "15\n", "15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_1/slicer_28_1.png\n", "Saving slicer 2 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_1/slicer_28_2.png\n", "Saving slicer 3 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_1/slicer_28_3.png\n", "Saving slicer 4 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_1/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000273070.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_2/slicer_29_1.png\n", "Saving slicer 2 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_2/slicer_29_2.png\n", "Saving slicer 3 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_2/slicer_29_3.png\n", "Saving slicer 4 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_2/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000273070.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_3/slicer_27_1.png\n", "Saving slicer 2 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_3/slicer_27_2.png\n", "Saving slicer 3 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_3/slicer_27_3.png\n", "Saving slicer 4 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_3/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000273070.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_4/slicer_26_1.png\n", "Saving slicer 2 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_4/slicer_26_2.png\n", "Saving slicer 3 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_4/slicer_26_3.png\n", "Saving slicer 4 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_4/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000273070.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_5/slicer_25_1.png\n", "Saving slicer 2 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_5/slicer_25_2.png\n", "Saving slicer 3 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_5/slicer_25_3.png\n", "Saving slicer 4 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_5/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000273070.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_6/slicer_24_1.png\n", "Saving slicer 2 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_6/slicer_24_2.png\n", "Saving slicer 3 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_6/slicer_24_3.png\n", "Saving slicer 4 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_6/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000273070.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_7/slicer_23_1.png\n", "Saving slicer 2 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_7/slicer_23_2.png\n", "Saving slicer 3 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_7/slicer_23_3.png\n", "Saving slicer 4 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_7/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000273070.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_8/slicer_30_1.png\n", "Saving slicer 2 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_8/slicer_30_2.png\n", "Saving slicer 3 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_8/slicer_30_3.png\n", "Saving slicer 4 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_8/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000273070.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_9/slicer_22_1.png\n", "Saving slicer 2 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_9/slicer_22_2.png\n", "Saving slicer 3 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_9/slicer_22_3.png\n", "Saving slicer 4 for patient 0000273070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000273070_9/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000273070.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000277869/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000277869/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000277869/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000277869/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277869/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277869/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277869/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277869/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 27, 28]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 27, 28]\n", "After T1 ROI slices: [18, 19, 20, 21, 22, 27]\n", "After T2 ROI slices: [18, 19, 20, 21, 22, 27]\n", "22\n", "22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [28] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [28] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_1/slicer_28_1.png\n", "Saving slicer 2 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_1/slicer_28_2.png\n", "Saving slicer 3 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_1/slicer_28_3.png\n", "Saving slicer 4 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_1/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000277869.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_2/slicer_27_1.png\n", "Saving slicer 2 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_2/slicer_27_2.png\n", "Saving slicer 3 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_2/slicer_27_3.png\n", "Saving slicer 4 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_2/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000277869.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_3/slicer_20_1.png\n", "Saving slicer 2 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_3/slicer_20_2.png\n", "Saving slicer 3 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_3/slicer_20_3.png\n", "Saving slicer 4 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_3/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000277869.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_4/slicer_19_1.png\n", "Saving slicer 2 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_4/slicer_19_2.png\n", "Saving slicer 3 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_4/slicer_19_3.png\n", "Saving slicer 4 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_4/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000277869.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_5/slicer_21_1.png\n", "Saving slicer 2 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_5/slicer_21_2.png\n", "Saving slicer 3 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_5/slicer_21_3.png\n", "Saving slicer 4 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_5/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000277869.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_6/slicer_18_1.png\n", "Saving slicer 2 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_6/slicer_18_2.png\n", "Saving slicer 3 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_6/slicer_18_3.png\n", "Saving slicer 4 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_6/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000277869.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_7/slicer_22_1.png\n", "Saving slicer 2 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_7/slicer_22_2.png\n", "Saving slicer 3 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_7/slicer_22_3.png\n", "Saving slicer 4 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_7/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000277869.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [7] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [7] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_8/slicer_7_1.png\n", "Saving slicer 2 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_8/slicer_7_2.png\n", "Saving slicer 3 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_8/slicer_7_3.png\n", "Saving slicer 4 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_8/slicer_7_4.png\n", "Successfully saved 4 slices for patient 0000277869.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_9/slicer_17_1.png\n", "Saving slicer 2 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_9/slicer_17_2.png\n", "Saving slicer 3 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_9/slicer_17_3.png\n", "Saving slicer 4 for patient 0000277869 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000277869_9/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000277869.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279540/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279540/mask_all.nii.gz\n", "Image shape: (36, 432, 432), Mask shape: (36, 432, 432)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279540/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279540/mask_all.nii.gz\n", "Image shape: (36, 432, 432), Mask shape: (36, 432, 432)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279540/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279540/mask_all.nii.gz\n", "Image shape: (36, 432, 432), Mask shape: (36, 432, 432)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279540/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279540/mask_all.nii.gz\n", "Image shape: (36, 432, 432), Mask shape: (36, 432, 432)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [11, 12, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [17, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [17, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "18\n", "18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_1/slicer_27_1.png\n", "Saving slicer 2 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_1/slicer_27_2.png\n", "Saving slicer 3 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_1/slicer_27_3.png\n", "Saving slicer 4 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_1/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000279540.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_2/slicer_26_1.png\n", "Saving slicer 2 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_2/slicer_26_2.png\n", "Saving slicer 3 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_2/slicer_26_3.png\n", "Saving slicer 4 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_2/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000279540.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_3/slicer_29_1.png\n", "Saving slicer 2 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_3/slicer_29_2.png\n", "Saving slicer 3 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_3/slicer_29_3.png\n", "Saving slicer 4 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_3/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000279540.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_4/slicer_28_1.png\n", "Saving slicer 2 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_4/slicer_28_2.png\n", "Saving slicer 3 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_4/slicer_28_3.png\n", "Saving slicer 4 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_4/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000279540.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_5/slicer_25_1.png\n", "Saving slicer 2 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_5/slicer_25_2.png\n", "Saving slicer 3 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_5/slicer_25_3.png\n", "Saving slicer 4 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_5/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000279540.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_6/slicer_30_1.png\n", "Saving slicer 2 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_6/slicer_30_2.png\n", "Saving slicer 3 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_6/slicer_30_3.png\n", "Saving slicer 4 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_6/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000279540.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_7/slicer_31_1.png\n", "Saving slicer 2 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_7/slicer_31_2.png\n", "Saving slicer 3 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_7/slicer_31_3.png\n", "Saving slicer 4 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_7/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000279540.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_8/slicer_24_1.png\n", "Saving slicer 2 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_8/slicer_24_2.png\n", "Saving slicer 3 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_8/slicer_24_3.png\n", "Saving slicer 4 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_8/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000279540.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_9/slicer_32_1.png\n", "Saving slicer 2 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_9/slicer_32_2.png\n", "Saving slicer 3 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_9/slicer_32_3.png\n", "Saving slicer 4 for patient 0000279540 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279540_9/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000279540.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000304885/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000304885/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000304885/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000304885/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304885/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304885/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304885/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304885/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36]\n", "Before T2 ROI slices: [3, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35]\n", "23\n", "23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_1/slicer_30_1.png\n", "Saving slicer 2 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_1/slicer_30_2.png\n", "Saving slicer 3 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_1/slicer_30_3.png\n", "Saving slicer 4 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_1/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000304885.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_2/slicer_31_1.png\n", "Saving slicer 2 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_2/slicer_31_2.png\n", "Saving slicer 3 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_2/slicer_31_3.png\n", "Saving slicer 4 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_2/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000304885.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_3/slicer_34_1.png\n", "Saving slicer 2 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_3/slicer_34_2.png\n", "Saving slicer 3 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_3/slicer_34_3.png\n", "Saving slicer 4 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_3/slicer_34_4.png\n", "Successfully saved 4 slices for patient 0000304885.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_4/slicer_29_1.png\n", "Saving slicer 2 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_4/slicer_29_2.png\n", "Saving slicer 3 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_4/slicer_29_3.png\n", "Saving slicer 4 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_4/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000304885.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_5/slicer_32_1.png\n", "Saving slicer 2 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_5/slicer_32_2.png\n", "Saving slicer 3 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_5/slicer_32_3.png\n", "Saving slicer 4 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_5/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000304885.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_6/slicer_35_1.png\n", "Saving slicer 2 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_6/slicer_35_2.png\n", "Saving slicer 3 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_6/slicer_35_3.png\n", "Saving slicer 4 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_6/slicer_35_4.png\n", "Successfully saved 4 slices for patient 0000304885.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_7/slicer_33_1.png\n", "Saving slicer 2 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_7/slicer_33_2.png\n", "Saving slicer 3 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_7/slicer_33_3.png\n", "Saving slicer 4 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_7/slicer_33_4.png\n", "Successfully saved 4 slices for patient 0000304885.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_8/slicer_28_1.png\n", "Saving slicer 2 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_8/slicer_28_2.png\n", "Saving slicer 3 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_8/slicer_28_3.png\n", "Saving slicer 4 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_8/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000304885.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [36] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [36] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_9/slicer_36_1.png\n", "Saving slicer 2 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_9/slicer_36_2.png\n", "Saving slicer 3 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_9/slicer_36_3.png\n", "Saving slicer 4 for patient 0000304885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304885_9/slicer_36_4.png\n", "Successfully saved 4 slices for patient 0000304885.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248281/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248281/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248281/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248281/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248281/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248281/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248281/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248281/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [2, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "25\n", "25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_1/slicer_25_1.png\n", "Saving slicer 2 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_1/slicer_25_2.png\n", "Saving slicer 3 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_1/slicer_25_3.png\n", "Saving slicer 4 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_1/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000248281.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_2/slicer_24_1.png\n", "Saving slicer 2 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_2/slicer_24_2.png\n", "Saving slicer 3 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_2/slicer_24_3.png\n", "Saving slicer 4 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_2/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000248281.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_3/slicer_15_1.png\n", "Saving slicer 2 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_3/slicer_15_2.png\n", "Saving slicer 3 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_3/slicer_15_3.png\n", "Saving slicer 4 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_3/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000248281.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_4/slicer_14_1.png\n", "Saving slicer 2 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_4/slicer_14_2.png\n", "Saving slicer 3 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_4/slicer_14_3.png\n", "Saving slicer 4 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_4/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000248281.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_5/slicer_16_1.png\n", "Saving slicer 2 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_5/slicer_16_2.png\n", "Saving slicer 3 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_5/slicer_16_3.png\n", "Saving slicer 4 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_5/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000248281.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_6/slicer_13_1.png\n", "Saving slicer 2 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_6/slicer_13_2.png\n", "Saving slicer 3 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_6/slicer_13_3.png\n", "Saving slicer 4 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_6/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000248281.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_7/slicer_12_1.png\n", "Saving slicer 2 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_7/slicer_12_2.png\n", "Saving slicer 3 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_7/slicer_12_3.png\n", "Saving slicer 4 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_7/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000248281.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_8/slicer_17_1.png\n", "Saving slicer 2 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_8/slicer_17_2.png\n", "Saving slicer 3 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_8/slicer_17_3.png\n", "Saving slicer 4 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_8/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000248281.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_9/slicer_26_1.png\n", "Saving slicer 2 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_9/slicer_26_2.png\n", "Saving slicer 3 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_9/slicer_26_3.png\n", "Saving slicer 4 for patient 0000248281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248281_9/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000248281.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000234802/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000234802/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000234802/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000234802/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000234802/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000234802/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000234802/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000234802/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24]\n", "16\n", "16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_1/slicer_15_1.png\n", "Saving slicer 2 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_1/slicer_15_2.png\n", "Saving slicer 3 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_1/slicer_15_3.png\n", "Saving slicer 4 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_1/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000234802.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_2/slicer_14_1.png\n", "Saving slicer 2 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_2/slicer_14_2.png\n", "Saving slicer 3 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_2/slicer_14_3.png\n", "Saving slicer 4 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_2/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000234802.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_3/slicer_16_1.png\n", "Saving slicer 2 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_3/slicer_16_2.png\n", "Saving slicer 3 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_3/slicer_16_3.png\n", "Saving slicer 4 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_3/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000234802.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_4/slicer_24_1.png\n", "Saving slicer 2 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_4/slicer_24_2.png\n", "Saving slicer 3 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_4/slicer_24_3.png\n", "Saving slicer 4 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_4/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000234802.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_5/slicer_17_1.png\n", "Saving slicer 2 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_5/slicer_17_2.png\n", "Saving slicer 3 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_5/slicer_17_3.png\n", "Saving slicer 4 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_5/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000234802.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_6/slicer_18_1.png\n", "Saving slicer 2 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_6/slicer_18_2.png\n", "Saving slicer 3 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_6/slicer_18_3.png\n", "Saving slicer 4 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_6/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000234802.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_7/slicer_23_1.png\n", "Saving slicer 2 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_7/slicer_23_2.png\n", "Saving slicer 3 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_7/slicer_23_3.png\n", "Saving slicer 4 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_7/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000234802.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_8/slicer_13_1.png\n", "Saving slicer 2 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_8/slicer_13_2.png\n", "Saving slicer 3 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_8/slicer_13_3.png\n", "Saving slicer 4 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_8/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000234802.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_9/slicer_22_1.png\n", "Saving slicer 2 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_9/slicer_22_2.png\n", "Saving slicer 3 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_9/slicer_22_3.png\n", "Saving slicer 4 for patient 0000234802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000234802_9/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000234802.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000308992/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000308992/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000308992/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000308992/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308992/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308992/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308992/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308992/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "18\n", "18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_1/slicer_27_1.png\n", "Saving slicer 2 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_1/slicer_27_2.png\n", "Saving slicer 3 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_1/slicer_27_3.png\n", "Saving slicer 4 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_1/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000308992.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_2/slicer_28_1.png\n", "Saving slicer 2 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_2/slicer_28_2.png\n", "Saving slicer 3 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_2/slicer_28_3.png\n", "Saving slicer 4 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_2/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000308992.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_3/slicer_26_1.png\n", "Saving slicer 2 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_3/slicer_26_2.png\n", "Saving slicer 3 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_3/slicer_26_3.png\n", "Saving slicer 4 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_3/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000308992.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_4/slicer_30_1.png\n", "Saving slicer 2 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_4/slicer_30_2.png\n", "Saving slicer 3 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_4/slicer_30_3.png\n", "Saving slicer 4 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_4/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000308992.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_5/slicer_29_1.png\n", "Saving slicer 2 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_5/slicer_29_2.png\n", "Saving slicer 3 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_5/slicer_29_3.png\n", "Saving slicer 4 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_5/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000308992.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_6/slicer_25_1.png\n", "Saving slicer 2 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_6/slicer_25_2.png\n", "Saving slicer 3 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_6/slicer_25_3.png\n", "Saving slicer 4 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_6/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000308992.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_7/slicer_24_1.png\n", "Saving slicer 2 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_7/slicer_24_2.png\n", "Saving slicer 3 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_7/slicer_24_3.png\n", "Saving slicer 4 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_7/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000308992.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_8/slicer_31_1.png\n", "Saving slicer 2 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_8/slicer_31_2.png\n", "Saving slicer 3 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_8/slicer_31_3.png\n", "Saving slicer 4 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_8/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000308992.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_9/slicer_18_1.png\n", "Saving slicer 2 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_9/slicer_18_2.png\n", "Saving slicer 3 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_9/slicer_18_3.png\n", "Saving slicer 4 for patient 0000308992 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000308992_9/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000308992.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256497/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256497/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256497/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256497/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256497/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256497/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256497/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256497/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [1, 2, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [1, 2, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25]\n", "24\n", "24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_1/slicer_25_1.png\n", "Saving slicer 2 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_1/slicer_25_2.png\n", "Saving slicer 3 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_1/slicer_25_3.png\n", "Saving slicer 4 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_1/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000256497.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_2/slicer_14_1.png\n", "Saving slicer 2 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_2/slicer_14_2.png\n", "Saving slicer 3 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_2/slicer_14_3.png\n", "Saving slicer 4 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_2/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000256497.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_3/slicer_15_1.png\n", "Saving slicer 2 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_3/slicer_15_2.png\n", "Saving slicer 3 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_3/slicer_15_3.png\n", "Saving slicer 4 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_3/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000256497.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_4/slicer_13_1.png\n", "Saving slicer 2 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_4/slicer_13_2.png\n", "Saving slicer 3 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_4/slicer_13_3.png\n", "Saving slicer 4 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_4/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000256497.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_5/slicer_16_1.png\n", "Saving slicer 2 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_5/slicer_16_2.png\n", "Saving slicer 3 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_5/slicer_16_3.png\n", "Saving slicer 4 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_5/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000256497.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [26] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [26] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_6/slicer_26_1.png\n", "Saving slicer 2 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_6/slicer_26_2.png\n", "Saving slicer 3 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_6/slicer_26_3.png\n", "Saving slicer 4 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_6/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000256497.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_7/slicer_12_1.png\n", "Saving slicer 2 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_7/slicer_12_2.png\n", "Saving slicer 3 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_7/slicer_12_3.png\n", "Saving slicer 4 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_7/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000256497.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_8/slicer_23_1.png\n", "Saving slicer 2 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_8/slicer_23_2.png\n", "Saving slicer 3 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_8/slicer_23_3.png\n", "Saving slicer 4 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_8/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000256497.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_9/slicer_22_1.png\n", "Saving slicer 2 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_9/slicer_22_2.png\n", "Saving slicer 3 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_9/slicer_22_3.png\n", "Saving slicer 4 for patient 0000256497 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000256497_9/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000256497.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000265790/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000265790/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000265790/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000265790/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265790/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265790/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265790/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265790/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29, 30]\n", "17\n", "17\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_1/slicer_28_1.png\n", "Saving slicer 2 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_1/slicer_28_2.png\n", "Saving slicer 3 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_1/slicer_28_3.png\n", "Saving slicer 4 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_1/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000265790.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_2/slicer_29_1.png\n", "Saving slicer 2 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_2/slicer_29_2.png\n", "Saving slicer 3 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_2/slicer_29_3.png\n", "Saving slicer 4 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_2/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000265790.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_3/slicer_27_1.png\n", "Saving slicer 2 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_3/slicer_27_2.png\n", "Saving slicer 3 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_3/slicer_27_3.png\n", "Saving slicer 4 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_3/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000265790.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_4/slicer_26_1.png\n", "Saving slicer 2 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_4/slicer_26_2.png\n", "Saving slicer 3 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_4/slicer_26_3.png\n", "Saving slicer 4 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_4/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000265790.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_5/slicer_30_1.png\n", "Saving slicer 2 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_5/slicer_30_2.png\n", "Saving slicer 3 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_5/slicer_30_3.png\n", "Saving slicer 4 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_5/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000265790.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_6/slicer_25_1.png\n", "Saving slicer 2 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_6/slicer_25_2.png\n", "Saving slicer 3 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_6/slicer_25_3.png\n", "Saving slicer 4 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_6/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000265790.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_7/slicer_24_1.png\n", "Saving slicer 2 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_7/slicer_24_2.png\n", "Saving slicer 3 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_7/slicer_24_3.png\n", "Saving slicer 4 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_7/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000265790.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_8/slicer_17_1.png\n", "Saving slicer 2 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_8/slicer_17_2.png\n", "Saving slicer 3 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_8/slicer_17_3.png\n", "Saving slicer 4 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_8/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000265790.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_9/slicer_18_1.png\n", "Saving slicer 2 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_9/slicer_18_2.png\n", "Saving slicer 3 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_9/slicer_18_3.png\n", "Saving slicer 4 for patient 0000265790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265790_9/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000265790.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286520/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286520/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286520/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286520/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286520/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286520/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286520/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286520/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [16, 17, 18, 19, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 24, 25, 26, 27, 28, 29, 30]\n", "16\n", "16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_1/slicer_28_1.png\n", "Saving slicer 2 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_1/slicer_28_2.png\n", "Saving slicer 3 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_1/slicer_28_3.png\n", "Saving slicer 4 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_1/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000286520.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_2/slicer_29_1.png\n", "Saving slicer 2 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_2/slicer_29_2.png\n", "Saving slicer 3 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_2/slicer_29_3.png\n", "Saving slicer 4 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_2/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000286520.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_3/slicer_27_1.png\n", "Saving slicer 2 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_3/slicer_27_2.png\n", "Saving slicer 3 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_3/slicer_27_3.png\n", "Saving slicer 4 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_3/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000286520.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_4/slicer_26_1.png\n", "Saving slicer 2 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_4/slicer_26_2.png\n", "Saving slicer 3 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_4/slicer_26_3.png\n", "Saving slicer 4 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_4/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000286520.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_5/slicer_30_1.png\n", "Saving slicer 2 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_5/slicer_30_2.png\n", "Saving slicer 3 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_5/slicer_30_3.png\n", "Saving slicer 4 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_5/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000286520.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [31] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [31] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_6/slicer_31_1.png\n", "Saving slicer 2 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_6/slicer_31_2.png\n", "Saving slicer 3 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_6/slicer_31_3.png\n", "Saving slicer 4 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_6/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000286520.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [33] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [33] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_7/slicer_33_1.png\n", "Saving slicer 2 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_7/slicer_33_2.png\n", "Saving slicer 3 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_7/slicer_33_3.png\n", "Saving slicer 4 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_7/slicer_33_4.png\n", "Successfully saved 4 slices for patient 0000286520.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_8/slicer_32_1.png\n", "Saving slicer 2 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_8/slicer_32_2.png\n", "Saving slicer 3 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_8/slicer_32_3.png\n", "Saving slicer 4 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_8/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000286520.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_9/slicer_25_1.png\n", "Saving slicer 2 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_9/slicer_25_2.png\n", "Saving slicer 3 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_9/slicer_25_3.png\n", "Saving slicer 4 for patient 0000286520 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000286520_9/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000286520.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274945/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274945/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274945/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274945/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274945/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274945/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274945/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274945/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [18, 19, 20, 21, 22, 23, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T2 ROI slices: [18, 19, 20, 21, 22, 23, 26, 27, 28, 29, 30, 31, 32, 33]\n", "15\n", "15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_1/slicer_27_1.png\n", "Saving slicer 2 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_1/slicer_27_2.png\n", "Saving slicer 3 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_1/slicer_27_3.png\n", "Saving slicer 4 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_1/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000274945.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_2/slicer_28_1.png\n", "Saving slicer 2 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_2/slicer_28_2.png\n", "Saving slicer 3 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_2/slicer_28_3.png\n", "Saving slicer 4 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_2/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000274945.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_3/slicer_29_1.png\n", "Saving slicer 2 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_3/slicer_29_2.png\n", "Saving slicer 3 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_3/slicer_29_3.png\n", "Saving slicer 4 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_3/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000274945.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_4/slicer_30_1.png\n", "Saving slicer 2 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_4/slicer_30_2.png\n", "Saving slicer 3 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_4/slicer_30_3.png\n", "Saving slicer 4 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_4/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000274945.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_5/slicer_26_1.png\n", "Saving slicer 2 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_5/slicer_26_2.png\n", "Saving slicer 3 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_5/slicer_26_3.png\n", "Saving slicer 4 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_5/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000274945.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_6/slicer_31_1.png\n", "Saving slicer 2 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_6/slicer_31_2.png\n", "Saving slicer 3 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_6/slicer_31_3.png\n", "Saving slicer 4 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_6/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000274945.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_7/slicer_32_1.png\n", "Saving slicer 2 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_7/slicer_32_2.png\n", "Saving slicer 3 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_7/slicer_32_3.png\n", "Saving slicer 4 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_7/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000274945.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_8/slicer_21_1.png\n", "Saving slicer 2 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_8/slicer_21_2.png\n", "Saving slicer 3 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_8/slicer_21_3.png\n", "Saving slicer 4 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_8/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000274945.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_9/slicer_19_1.png\n", "Saving slicer 2 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_9/slicer_19_2.png\n", "Saving slicer 3 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_9/slicer_19_3.png\n", "Saving slicer 4 for patient 0000274945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274945_9/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000274945.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000238035/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000238035/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000238035/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000238035/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000238035/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000238035/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000238035/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000238035/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [8, 11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 25, 26, 27, 28, 29, 30]\n", "21\n", "21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_1/slicer_29_1.png\n", "Saving slicer 2 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_1/slicer_29_2.png\n", "Saving slicer 3 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_1/slicer_29_3.png\n", "Saving slicer 4 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_1/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000238035.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_2/slicer_28_1.png\n", "Saving slicer 2 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_2/slicer_28_2.png\n", "Saving slicer 3 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_2/slicer_28_3.png\n", "Saving slicer 4 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_2/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000238035.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_3/slicer_27_1.png\n", "Saving slicer 2 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_3/slicer_27_2.png\n", "Saving slicer 3 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_3/slicer_27_3.png\n", "Saving slicer 4 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_3/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000238035.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_4/slicer_26_1.png\n", "Saving slicer 2 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_4/slicer_26_2.png\n", "Saving slicer 3 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_4/slicer_26_3.png\n", "Saving slicer 4 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_4/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000238035.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_5/slicer_22_1.png\n", "Saving slicer 2 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_5/slicer_22_2.png\n", "Saving slicer 3 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_5/slicer_22_3.png\n", "Saving slicer 4 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_5/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000238035.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_6/slicer_21_1.png\n", "Saving slicer 2 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_6/slicer_21_2.png\n", "Saving slicer 3 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_6/slicer_21_3.png\n", "Saving slicer 4 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_6/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000238035.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [24] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [24] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_7/slicer_24_1.png\n", "Saving slicer 2 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_7/slicer_24_2.png\n", "Saving slicer 3 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_7/slicer_24_3.png\n", "Saving slicer 4 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_7/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000238035.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_8/slicer_23_1.png\n", "Saving slicer 2 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_8/slicer_23_2.png\n", "Saving slicer 3 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_8/slicer_23_3.png\n", "Saving slicer 4 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_8/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000238035.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_9/slicer_20_1.png\n", "Saving slicer 2 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_9/slicer_20_2.png\n", "Saving slicer 3 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_9/slicer_20_3.png\n", "Saving slicer 4 for patient 0000238035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238035_9/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000238035.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266998/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266998/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266998/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266998/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266998/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266998/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266998/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266998/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [17, 18, 19, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [17, 18, 19, 23, 24, 25, 26, 27, 28]\n", "16\n", "16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_1/slicer_27_1.png\n", "Saving slicer 2 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_1/slicer_27_2.png\n", "Saving slicer 3 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_1/slicer_27_3.png\n", "Saving slicer 4 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_1/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000266998.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_2/slicer_25_1.png\n", "Saving slicer 2 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_2/slicer_25_2.png\n", "Saving slicer 3 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_2/slicer_25_3.png\n", "Saving slicer 4 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_2/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000266998.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_3/slicer_26_1.png\n", "Saving slicer 2 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_3/slicer_26_2.png\n", "Saving slicer 3 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_3/slicer_26_3.png\n", "Saving slicer 4 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_3/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000266998.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_4/slicer_28_1.png\n", "Saving slicer 2 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_4/slicer_28_2.png\n", "Saving slicer 3 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_4/slicer_28_3.png\n", "Saving slicer 4 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_4/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000266998.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_5/slicer_24_1.png\n", "Saving slicer 2 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_5/slicer_24_2.png\n", "Saving slicer 3 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_5/slicer_24_3.png\n", "Saving slicer 4 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_5/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000266998.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_6/slicer_23_1.png\n", "Saving slicer 2 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_6/slicer_23_2.png\n", "Saving slicer 3 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_6/slicer_23_3.png\n", "Saving slicer 4 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_6/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000266998.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_7/slicer_20_1.png\n", "Saving slicer 2 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_7/slicer_20_2.png\n", "Saving slicer 3 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_7/slicer_20_3.png\n", "Saving slicer 4 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_7/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000266998.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_8/slicer_22_1.png\n", "Saving slicer 2 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_8/slicer_22_2.png\n", "Saving slicer 3 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_8/slicer_22_3.png\n", "Saving slicer 4 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_8/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000266998.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_9/slicer_21_1.png\n", "Saving slicer 2 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_9/slicer_21_2.png\n", "Saving slicer 3 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_9/slicer_21_3.png\n", "Saving slicer 4 for patient 0000266998 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000266998_9/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000266998.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000265451/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000265451/mask_all.nii.gz\n", "Image shape: (40, 384, 384), Mask shape: (40, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000265451/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000265451/mask_all.nii.gz\n", "Image shape: (40, 384, 384), Mask shape: (40, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265451/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265451/mask_all.nii.gz\n", "Image shape: (40, 384, 384), Mask shape: (40, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265451/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265451/mask_all.nii.gz\n", "Image shape: (40, 384, 384), Mask shape: (40, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [7, 8, 9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [12, 13, 16, 17, 18, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [12, 13, 16, 17, 18, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "26\n", "26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_1/slicer_28_1.png\n", "Saving slicer 2 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_1/slicer_28_2.png\n", "Saving slicer 3 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_1/slicer_28_3.png\n", "Saving slicer 4 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_1/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000265451.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_2/slicer_29_1.png\n", "Saving slicer 2 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_2/slicer_29_2.png\n", "Saving slicer 3 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_2/slicer_29_3.png\n", "Saving slicer 4 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_2/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000265451.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_3/slicer_30_1.png\n", "Saving slicer 2 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_3/slicer_30_2.png\n", "Saving slicer 3 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_3/slicer_30_3.png\n", "Saving slicer 4 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_3/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000265451.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_4/slicer_27_1.png\n", "Saving slicer 2 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_4/slicer_27_2.png\n", "Saving slicer 3 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_4/slicer_27_3.png\n", "Saving slicer 4 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_4/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000265451.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_5/slicer_26_1.png\n", "Saving slicer 2 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_5/slicer_26_2.png\n", "Saving slicer 3 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_5/slicer_26_3.png\n", "Saving slicer 4 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_5/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000265451.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_6/slicer_31_1.png\n", "Saving slicer 2 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_6/slicer_31_2.png\n", "Saving slicer 3 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_6/slicer_31_3.png\n", "Saving slicer 4 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_6/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000265451.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_7/slicer_32_1.png\n", "Saving slicer 2 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_7/slicer_32_2.png\n", "Saving slicer 3 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_7/slicer_32_3.png\n", "Saving slicer 4 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_7/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000265451.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_8/slicer_25_1.png\n", "Saving slicer 2 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_8/slicer_25_2.png\n", "Saving slicer 3 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_8/slicer_25_3.png\n", "Saving slicer 4 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_8/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000265451.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [33] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [33] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_9/slicer_33_1.png\n", "Saving slicer 2 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_9/slicer_33_2.png\n", "Saving slicer 3 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_9/slicer_33_3.png\n", "Saving slicer 4 for patient 0000265451 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000265451_9/slicer_33_4.png\n", "Successfully saved 4 slices for patient 0000265451.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279251/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279251/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279251/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279251/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279251/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279251/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279251/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279251/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [13, 14, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [13, 14, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "19\n", "19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_1/slicer_27_1.png\n", "Saving slicer 2 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_1/slicer_27_2.png\n", "Saving slicer 3 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_1/slicer_27_3.png\n", "Saving slicer 4 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_1/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000279251.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_2/slicer_24_1.png\n", "Saving slicer 2 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_2/slicer_24_2.png\n", "Saving slicer 3 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_2/slicer_24_3.png\n", "Saving slicer 4 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_2/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000279251.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_3/slicer_26_1.png\n", "Saving slicer 2 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_3/slicer_26_2.png\n", "Saving slicer 3 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_3/slicer_26_3.png\n", "Saving slicer 4 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_3/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000279251.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_4/slicer_25_1.png\n", "Saving slicer 2 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_4/slicer_25_2.png\n", "Saving slicer 3 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_4/slicer_25_3.png\n", "Saving slicer 4 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_4/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000279251.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_5/slicer_21_1.png\n", "Saving slicer 2 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_5/slicer_21_2.png\n", "Saving slicer 3 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_5/slicer_21_3.png\n", "Saving slicer 4 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_5/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000279251.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_6/slicer_22_1.png\n", "Saving slicer 2 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_6/slicer_22_2.png\n", "Saving slicer 3 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_6/slicer_22_3.png\n", "Saving slicer 4 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_6/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000279251.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_7/slicer_23_1.png\n", "Saving slicer 2 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_7/slicer_23_2.png\n", "Saving slicer 3 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_7/slicer_23_3.png\n", "Saving slicer 4 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_7/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000279251.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_8/slicer_20_1.png\n", "Saving slicer 2 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_8/slicer_20_2.png\n", "Saving slicer 3 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_8/slicer_20_3.png\n", "Saving slicer 4 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_8/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000279251.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_9/slicer_19_1.png\n", "Saving slicer 2 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_9/slicer_19_2.png\n", "Saving slicer 3 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_9/slicer_19_3.png\n", "Saving slicer 4 for patient 0000279251 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000279251_9/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000279251.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000238087/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000238087/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000238087/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000238087/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000238087/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000238087/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000238087/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000238087/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 30]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 30]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "18\n", "18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_1/slicer_23_1.png\n", "Saving slicer 2 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_1/slicer_23_2.png\n", "Saving slicer 3 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_1/slicer_23_3.png\n", "Saving slicer 4 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_1/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000238087.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_2/slicer_25_1.png\n", "Saving slicer 2 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_2/slicer_25_2.png\n", "Saving slicer 3 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_2/slicer_25_3.png\n", "Saving slicer 4 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_2/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000238087.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_3/slicer_24_1.png\n", "Saving slicer 2 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_3/slicer_24_2.png\n", "Saving slicer 3 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_3/slicer_24_3.png\n", "Saving slicer 4 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_3/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000238087.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_4/slicer_16_1.png\n", "Saving slicer 2 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_4/slicer_16_2.png\n", "Saving slicer 3 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_4/slicer_16_3.png\n", "Saving slicer 4 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_4/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000238087.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_5/slicer_22_1.png\n", "Saving slicer 2 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_5/slicer_22_2.png\n", "Saving slicer 3 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_5/slicer_22_3.png\n", "Saving slicer 4 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_5/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000238087.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_6/slicer_17_1.png\n", "Saving slicer 2 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_6/slicer_17_2.png\n", "Saving slicer 3 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_6/slicer_17_3.png\n", "Saving slicer 4 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_6/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000238087.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_7/slicer_15_1.png\n", "Saving slicer 2 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_7/slicer_15_2.png\n", "Saving slicer 3 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_7/slicer_15_3.png\n", "Saving slicer 4 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_7/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000238087.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_8/slicer_27_1.png\n", "Saving slicer 2 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_8/slicer_27_2.png\n", "Saving slicer 3 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_8/slicer_27_3.png\n", "Saving slicer 4 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_8/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000238087.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_9/slicer_14_1.png\n", "Saving slicer 2 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_9/slicer_14_2.png\n", "Saving slicer 3 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_9/slicer_14_3.png\n", "Saving slicer 4 for patient 0000238087 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000238087_9/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000238087.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000261839/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000261839/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000261839/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000261839/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261839/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261839/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261839/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261839/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "22\n", "22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_1/slicer_26_1.png\n", "Saving slicer 2 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_1/slicer_26_2.png\n", "Saving slicer 3 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_1/slicer_26_3.png\n", "Saving slicer 4 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_1/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000261839.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_2/slicer_25_1.png\n", "Saving slicer 2 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_2/slicer_25_2.png\n", "Saving slicer 3 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_2/slicer_25_3.png\n", "Saving slicer 4 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_2/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000261839.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_3/slicer_18_1.png\n", "Saving slicer 2 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_3/slicer_18_2.png\n", "Saving slicer 3 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_3/slicer_18_3.png\n", "Saving slicer 4 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_3/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000261839.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_4/slicer_17_1.png\n", "Saving slicer 2 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_4/slicer_17_2.png\n", "Saving slicer 3 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_4/slicer_17_3.png\n", "Saving slicer 4 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_4/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000261839.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_5/slicer_27_1.png\n", "Saving slicer 2 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_5/slicer_27_2.png\n", "Saving slicer 3 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_5/slicer_27_3.png\n", "Saving slicer 4 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_5/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000261839.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_6/slicer_24_1.png\n", "Saving slicer 2 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_6/slicer_24_2.png\n", "Saving slicer 3 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_6/slicer_24_3.png\n", "Saving slicer 4 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_6/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000261839.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_7/slicer_23_1.png\n", "Saving slicer 2 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_7/slicer_23_2.png\n", "Saving slicer 3 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_7/slicer_23_3.png\n", "Saving slicer 4 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_7/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000261839.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_8/slicer_16_1.png\n", "Saving slicer 2 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_8/slicer_16_2.png\n", "Saving slicer 3 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_8/slicer_16_3.png\n", "Saving slicer 4 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_8/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000261839.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_9/slicer_19_1.png\n", "Saving slicer 2 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_9/slicer_19_2.png\n", "Saving slicer 3 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_9/slicer_19_3.png\n", "Saving slicer 4 for patient 0000261839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000261839_9/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000261839.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000307320/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000307320/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000307320/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000307320/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307320/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307320/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307320/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307320/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "21\n", "21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_1/slicer_27_1.png\n", "Saving slicer 2 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_1/slicer_27_2.png\n", "Saving slicer 3 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_1/slicer_27_3.png\n", "Saving slicer 4 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_1/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000307320.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_2/slicer_26_1.png\n", "Saving slicer 2 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_2/slicer_26_2.png\n", "Saving slicer 3 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_2/slicer_26_3.png\n", "Saving slicer 4 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_2/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000307320.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_3/slicer_28_1.png\n", "Saving slicer 2 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_3/slicer_28_2.png\n", "Saving slicer 3 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_3/slicer_28_3.png\n", "Saving slicer 4 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_3/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000307320.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_4/slicer_25_1.png\n", "Saving slicer 2 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_4/slicer_25_2.png\n", "Saving slicer 3 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_4/slicer_25_3.png\n", "Saving slicer 4 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_4/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000307320.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_5/slicer_24_1.png\n", "Saving slicer 2 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_5/slicer_24_2.png\n", "Saving slicer 3 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_5/slicer_24_3.png\n", "Saving slicer 4 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_5/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000307320.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_6/slicer_29_1.png\n", "Saving slicer 2 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_6/slicer_29_2.png\n", "Saving slicer 3 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_6/slicer_29_3.png\n", "Saving slicer 4 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_6/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000307320.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_7/slicer_23_1.png\n", "Saving slicer 2 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_7/slicer_23_2.png\n", "Saving slicer 3 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_7/slicer_23_3.png\n", "Saving slicer 4 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_7/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000307320.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_8/slicer_30_1.png\n", "Saving slicer 2 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_8/slicer_30_2.png\n", "Saving slicer 3 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_8/slicer_30_3.png\n", "Saving slicer 4 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_8/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000307320.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_9/slicer_20_1.png\n", "Saving slicer 2 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_9/slicer_20_2.png\n", "Saving slicer 3 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_9/slicer_20_3.png\n", "Saving slicer 4 for patient 0000307320 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000307320_9/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000307320.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000296870/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000296870/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000296870/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000296870/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296870/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296870/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296870/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296870/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30]\n", "17\n", "17\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_1/slicer_29_1.png\n", "Saving slicer 2 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_1/slicer_29_2.png\n", "Saving slicer 3 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_1/slicer_29_3.png\n", "Saving slicer 4 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_1/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000296870.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_2/slicer_27_1.png\n", "Saving slicer 2 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_2/slicer_27_2.png\n", "Saving slicer 3 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_2/slicer_27_3.png\n", "Saving slicer 4 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_2/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000296870.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_3/slicer_28_1.png\n", "Saving slicer 2 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_3/slicer_28_2.png\n", "Saving slicer 3 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_3/slicer_28_3.png\n", "Saving slicer 4 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_3/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000296870.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_4/slicer_26_1.png\n", "Saving slicer 2 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_4/slicer_26_2.png\n", "Saving slicer 3 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_4/slicer_26_3.png\n", "Saving slicer 4 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_4/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000296870.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_5/slicer_20_1.png\n", "Saving slicer 2 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_5/slicer_20_2.png\n", "Saving slicer 3 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_5/slicer_20_3.png\n", "Saving slicer 4 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_5/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000296870.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_6/slicer_22_1.png\n", "Saving slicer 2 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_6/slicer_22_2.png\n", "Saving slicer 3 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_6/slicer_22_3.png\n", "Saving slicer 4 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_6/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000296870.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_7/slicer_19_1.png\n", "Saving slicer 2 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_7/slicer_19_2.png\n", "Saving slicer 3 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_7/slicer_19_3.png\n", "Saving slicer 4 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_7/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000296870.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_8/slicer_21_1.png\n", "Saving slicer 2 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_8/slicer_21_2.png\n", "Saving slicer 3 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_8/slicer_21_3.png\n", "Saving slicer 4 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_8/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000296870.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_9/slicer_18_1.png\n", "Saving slicer 2 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_9/slicer_18_2.png\n", "Saving slicer 3 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_9/slicer_18_3.png\n", "Saving slicer 4 for patient 0000296870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000296870_9/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000296870.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000253162/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000253162/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000253162/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000253162/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253162/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253162/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253162/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253162/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "25\n", "25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_1/slicer_27_1.png\n", "Saving slicer 2 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_1/slicer_27_2.png\n", "Saving slicer 3 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_1/slicer_27_3.png\n", "Saving slicer 4 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_1/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000253162.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_2/slicer_30_1.png\n", "Saving slicer 2 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_2/slicer_30_2.png\n", "Saving slicer 3 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_2/slicer_30_3.png\n", "Saving slicer 4 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_2/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000253162.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_3/slicer_28_1.png\n", "Saving slicer 2 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_3/slicer_28_2.png\n", "Saving slicer 3 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_3/slicer_28_3.png\n", "Saving slicer 4 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_3/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000253162.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_4/slicer_29_1.png\n", "Saving slicer 2 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_4/slicer_29_2.png\n", "Saving slicer 3 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_4/slicer_29_3.png\n", "Saving slicer 4 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_4/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000253162.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_5/slicer_26_1.png\n", "Saving slicer 2 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_5/slicer_26_2.png\n", "Saving slicer 3 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_5/slicer_26_3.png\n", "Saving slicer 4 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_5/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000253162.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [31] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [31] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_6/slicer_31_1.png\n", "Saving slicer 2 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_6/slicer_31_2.png\n", "Saving slicer 3 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_6/slicer_31_3.png\n", "Saving slicer 4 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_6/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000253162.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_7/slicer_25_1.png\n", "Saving slicer 2 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_7/slicer_25_2.png\n", "Saving slicer 3 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_7/slicer_25_3.png\n", "Saving slicer 4 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_7/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000253162.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_8/slicer_24_1.png\n", "Saving slicer 2 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_8/slicer_24_2.png\n", "Saving slicer 3 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_8/slicer_24_3.png\n", "Saving slicer 4 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_8/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000253162.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_9/slicer_17_1.png\n", "Saving slicer 2 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_9/slicer_17_2.png\n", "Saving slicer 3 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_9/slicer_17_3.png\n", "Saving slicer 4 for patient 0000253162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000253162_9/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000253162.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000233512/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000233512/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000233512/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000233512/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000233512/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000233512/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000233512/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000233512/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "14\n", "14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_1/slicer_22_1.png\n", "Saving slicer 2 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_1/slicer_22_2.png\n", "Saving slicer 3 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_1/slicer_22_3.png\n", "Saving slicer 4 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_1/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000233512.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_2/slicer_21_1.png\n", "Saving slicer 2 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_2/slicer_21_2.png\n", "Saving slicer 3 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_2/slicer_21_3.png\n", "Saving slicer 4 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_2/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000233512.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_3/slicer_24_1.png\n", "Saving slicer 2 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_3/slicer_24_2.png\n", "Saving slicer 3 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_3/slicer_24_3.png\n", "Saving slicer 4 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_3/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000233512.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [27] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [27] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_4/slicer_27_1.png\n", "Saving slicer 2 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_4/slicer_27_2.png\n", "Saving slicer 3 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_4/slicer_27_3.png\n", "Saving slicer 4 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_4/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000233512.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_5/slicer_26_1.png\n", "Saving slicer 2 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_5/slicer_26_2.png\n", "Saving slicer 3 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_5/slicer_26_3.png\n", "Saving slicer 4 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_5/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000233512.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_6/slicer_25_1.png\n", "Saving slicer 2 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_6/slicer_25_2.png\n", "Saving slicer 3 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_6/slicer_25_3.png\n", "Saving slicer 4 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_6/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000233512.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_7/slicer_23_1.png\n", "Saving slicer 2 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_7/slicer_23_2.png\n", "Saving slicer 3 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_7/slicer_23_3.png\n", "Saving slicer 4 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_7/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000233512.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_8/slicer_20_1.png\n", "Saving slicer 2 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_8/slicer_20_2.png\n", "Saving slicer 3 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_8/slicer_20_3.png\n", "Saving slicer 4 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_8/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000233512.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_9/slicer_19_1.png\n", "Saving slicer 2 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_9/slicer_19_2.png\n", "Saving slicer 3 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_9/slicer_19_3.png\n", "Saving slicer 4 for patient 0000233512 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000233512_9/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000233512.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249885/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249885/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249885/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249885/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249885/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249885/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249885/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249885/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 25, 26, 27, 28, 29, 30, 31]\n", "16\n", "16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_1/slicer_29_1.png\n", "Saving slicer 2 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_1/slicer_29_2.png\n", "Saving slicer 3 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_1/slicer_29_3.png\n", "Saving slicer 4 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_1/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000249885.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_2/slicer_27_1.png\n", "Saving slicer 2 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_2/slicer_27_2.png\n", "Saving slicer 3 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_2/slicer_27_3.png\n", "Saving slicer 4 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_2/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000249885.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_3/slicer_28_1.png\n", "Saving slicer 2 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_3/slicer_28_2.png\n", "Saving slicer 3 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_3/slicer_28_3.png\n", "Saving slicer 4 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_3/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000249885.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_4/slicer_26_1.png\n", "Saving slicer 2 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_4/slicer_26_2.png\n", "Saving slicer 3 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_4/slicer_26_3.png\n", "Saving slicer 4 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_4/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000249885.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_5/slicer_25_1.png\n", "Saving slicer 2 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_5/slicer_25_2.png\n", "Saving slicer 3 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_5/slicer_25_3.png\n", "Saving slicer 4 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_5/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000249885.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [23] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [23] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_6/slicer_23_1.png\n", "Saving slicer 2 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_6/slicer_23_2.png\n", "Saving slicer 3 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_6/slicer_23_3.png\n", "Saving slicer 4 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_6/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000249885.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [24] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [24] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_7/slicer_24_1.png\n", "Saving slicer 2 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_7/slicer_24_2.png\n", "Saving slicer 3 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_7/slicer_24_3.png\n", "Saving slicer 4 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_7/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000249885.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_8/slicer_30_1.png\n", "Saving slicer 2 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_8/slicer_30_2.png\n", "Saving slicer 3 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_8/slicer_30_3.png\n", "Saving slicer 4 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_8/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000249885.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_9/slicer_22_1.png\n", "Saving slicer 2 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_9/slicer_22_2.png\n", "Saving slicer 3 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_9/slicer_22_3.png\n", "Saving slicer 4 for patient 0000249885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000249885_9/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000249885.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245870/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245870/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245870/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245870/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245870/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245870/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245870/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245870/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [18, 19, 20, 21, 22, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T2 ROI slices: [18, 19, 20, 21, 22, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "23\n", "23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_1/slicer_31_1.png\n", "Saving slicer 2 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_1/slicer_31_2.png\n", "Saving slicer 3 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_1/slicer_31_3.png\n", "Saving slicer 4 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_1/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000245870.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_2/slicer_30_1.png\n", "Saving slicer 2 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_2/slicer_30_2.png\n", "Saving slicer 3 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_2/slicer_30_3.png\n", "Saving slicer 4 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_2/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000245870.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_3/slicer_32_1.png\n", "Saving slicer 2 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_3/slicer_32_2.png\n", "Saving slicer 3 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_3/slicer_32_3.png\n", "Saving slicer 4 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_3/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000245870.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_4/slicer_33_1.png\n", "Saving slicer 2 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_4/slicer_33_2.png\n", "Saving slicer 3 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_4/slicer_33_3.png\n", "Saving slicer 4 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_4/slicer_33_4.png\n", "Successfully saved 4 slices for patient 0000245870.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_5/slicer_29_1.png\n", "Saving slicer 2 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_5/slicer_29_2.png\n", "Saving slicer 3 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_5/slicer_29_3.png\n", "Saving slicer 4 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_5/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000245870.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_6/slicer_28_1.png\n", "Saving slicer 2 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_6/slicer_28_2.png\n", "Saving slicer 3 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_6/slicer_28_3.png\n", "Saving slicer 4 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_6/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000245870.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_7/slicer_27_1.png\n", "Saving slicer 2 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_7/slicer_27_2.png\n", "Saving slicer 3 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_7/slicer_27_3.png\n", "Saving slicer 4 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_7/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000245870.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_8/slicer_20_1.png\n", "Saving slicer 2 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_8/slicer_20_2.png\n", "Saving slicer 3 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_8/slicer_20_3.png\n", "Saving slicer 4 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_8/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000245870.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_9/slicer_21_1.png\n", "Saving slicer 2 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_9/slicer_21_2.png\n", "Saving slicer 3 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_9/slicer_21_3.png\n", "Saving slicer 4 for patient 0000245870 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245870_9/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000245870.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248891/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248891/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248891/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248891/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248891/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248891/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248891/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248891/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "32\n", "32\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_1/slicer_25_1.png\n", "Saving slicer 2 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_1/slicer_25_2.png\n", "Saving slicer 3 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_1/slicer_25_3.png\n", "Saving slicer 4 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_1/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000248891.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_2/slicer_24_1.png\n", "Saving slicer 2 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_2/slicer_24_2.png\n", "Saving slicer 3 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_2/slicer_24_3.png\n", "Saving slicer 4 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_2/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000248891.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_3/slicer_26_1.png\n", "Saving slicer 2 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_3/slicer_26_2.png\n", "Saving slicer 3 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_3/slicer_26_3.png\n", "Saving slicer 4 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_3/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000248891.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_4/slicer_27_1.png\n", "Saving slicer 2 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_4/slicer_27_2.png\n", "Saving slicer 3 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_4/slicer_27_3.png\n", "Saving slicer 4 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_4/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000248891.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_5/slicer_23_1.png\n", "Saving slicer 2 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_5/slicer_23_2.png\n", "Saving slicer 3 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_5/slicer_23_3.png\n", "Saving slicer 4 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_5/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000248891.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_6/slicer_28_1.png\n", "Saving slicer 2 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_6/slicer_28_2.png\n", "Saving slicer 3 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_6/slicer_28_3.png\n", "Saving slicer 4 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_6/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000248891.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_7/slicer_22_1.png\n", "Saving slicer 2 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_7/slicer_22_2.png\n", "Saving slicer 3 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_7/slicer_22_3.png\n", "Saving slicer 4 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_7/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000248891.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_8/slicer_21_1.png\n", "Saving slicer 2 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_8/slicer_21_2.png\n", "Saving slicer 3 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_8/slicer_21_3.png\n", "Saving slicer 4 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_8/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000248891.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_9/slicer_20_1.png\n", "Saving slicer 2 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_9/slicer_20_2.png\n", "Saving slicer 3 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_9/slicer_20_3.png\n", "Saving slicer 4 for patient 0000248891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000248891_9/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000248891.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000304660/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000304660/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000304660/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000304660/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304660/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304660/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304660/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304660/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "15\n", "15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_1/slicer_28_1.png\n", "Saving slicer 2 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_1/slicer_28_2.png\n", "Saving slicer 3 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_1/slicer_28_3.png\n", "Saving slicer 4 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_1/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000304660.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_2/slicer_29_1.png\n", "Saving slicer 2 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_2/slicer_29_2.png\n", "Saving slicer 3 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_2/slicer_29_3.png\n", "Saving slicer 4 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_2/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000304660.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_3/slicer_27_1.png\n", "Saving slicer 2 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_3/slicer_27_2.png\n", "Saving slicer 3 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_3/slicer_27_3.png\n", "Saving slicer 4 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_3/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000304660.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_4/slicer_30_1.png\n", "Saving slicer 2 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_4/slicer_30_2.png\n", "Saving slicer 3 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_4/slicer_30_3.png\n", "Saving slicer 4 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_4/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000304660.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_5/slicer_26_1.png\n", "Saving slicer 2 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_5/slicer_26_2.png\n", "Saving slicer 3 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_5/slicer_26_3.png\n", "Saving slicer 4 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_5/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000304660.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_6/slicer_25_1.png\n", "Saving slicer 2 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_6/slicer_25_2.png\n", "Saving slicer 3 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_6/slicer_25_3.png\n", "Saving slicer 4 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_6/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000304660.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_7/slicer_31_1.png\n", "Saving slicer 2 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_7/slicer_31_2.png\n", "Saving slicer 3 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_7/slicer_31_3.png\n", "Saving slicer 4 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_7/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000304660.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_8/slicer_24_1.png\n", "Saving slicer 2 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_8/slicer_24_2.png\n", "Saving slicer 3 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_8/slicer_24_3.png\n", "Saving slicer 4 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_8/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000304660.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_9/slicer_19_1.png\n", "Saving slicer 2 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_9/slicer_19_2.png\n", "Saving slicer 3 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_9/slicer_19_3.png\n", "Saving slicer 4 for patient 0000304660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000304660_9/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000304660.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295663/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295663/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295663/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295663/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295663/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295663/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295663/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295663/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [9, 10, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [16, 17, 18, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T2 ROI slices: [16, 17, 18, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "19\n", "19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_1/slicer_25_1.png\n", "Saving slicer 2 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_1/slicer_25_2.png\n", "Saving slicer 3 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_1/slicer_25_3.png\n", "Saving slicer 4 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_1/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000295663.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_2/slicer_26_1.png\n", "Saving slicer 2 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_2/slicer_26_2.png\n", "Saving slicer 3 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_2/slicer_26_3.png\n", "Saving slicer 4 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_2/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000295663.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_3/slicer_27_1.png\n", "Saving slicer 2 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_3/slicer_27_2.png\n", "Saving slicer 3 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_3/slicer_27_3.png\n", "Saving slicer 4 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_3/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000295663.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_4/slicer_29_1.png\n", "Saving slicer 2 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_4/slicer_29_2.png\n", "Saving slicer 3 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_4/slicer_29_3.png\n", "Saving slicer 4 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_4/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000295663.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_5/slicer_30_1.png\n", "Saving slicer 2 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_5/slicer_30_2.png\n", "Saving slicer 3 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_5/slicer_30_3.png\n", "Saving slicer 4 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_5/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000295663.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_6/slicer_28_1.png\n", "Saving slicer 2 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_6/slicer_28_2.png\n", "Saving slicer 3 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_6/slicer_28_3.png\n", "Saving slicer 4 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_6/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000295663.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_7/slicer_31_1.png\n", "Saving slicer 2 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_7/slicer_31_2.png\n", "Saving slicer 3 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_7/slicer_31_3.png\n", "Saving slicer 4 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_7/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000295663.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_8/slicer_32_1.png\n", "Saving slicer 2 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_8/slicer_32_2.png\n", "Saving slicer 3 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_8/slicer_32_3.png\n", "Saving slicer 4 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_8/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000295663.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_9/slicer_33_1.png\n", "Saving slicer 2 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_9/slicer_33_2.png\n", "Saving slicer 3 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_9/slicer_33_3.png\n", "Saving slicer 4 for patient 0000295663 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000295663_9/slicer_33_4.png\n", "Successfully saved 4 slices for patient 0000295663.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293387/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293387/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293387/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293387/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293387/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293387/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293387/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293387/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [10, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 26, 27, 28, 29]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 26, 27, 28, 29]\n", "17\n", "17\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_1/slicer_19_1.png\n", "Saving slicer 2 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_1/slicer_19_2.png\n", "Saving slicer 3 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_1/slicer_19_3.png\n", "Saving slicer 4 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_1/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000293387.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_2/slicer_28_1.png\n", "Saving slicer 2 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_2/slicer_28_2.png\n", "Saving slicer 3 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_2/slicer_28_3.png\n", "Saving slicer 4 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_2/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000293387.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_3/slicer_20_1.png\n", "Saving slicer 2 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_3/slicer_20_2.png\n", "Saving slicer 3 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_3/slicer_20_3.png\n", "Saving slicer 4 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_3/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000293387.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_4/slicer_27_1.png\n", "Saving slicer 2 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_4/slicer_27_2.png\n", "Saving slicer 3 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_4/slicer_27_3.png\n", "Saving slicer 4 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_4/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000293387.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_5/slicer_18_1.png\n", "Saving slicer 2 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_5/slicer_18_2.png\n", "Saving slicer 3 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_5/slicer_18_3.png\n", "Saving slicer 4 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_5/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000293387.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_6/slicer_26_1.png\n", "Saving slicer 2 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_6/slicer_26_2.png\n", "Saving slicer 3 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_6/slicer_26_3.png\n", "Saving slicer 4 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_6/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000293387.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_7/slicer_29_1.png\n", "Saving slicer 2 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_7/slicer_29_2.png\n", "Saving slicer 3 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_7/slicer_29_3.png\n", "Saving slicer 4 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_7/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000293387.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [25] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [25] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_8/slicer_25_1.png\n", "Saving slicer 2 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_8/slicer_25_2.png\n", "Saving slicer 3 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_8/slicer_25_3.png\n", "Saving slicer 4 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_8/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000293387.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_9/slicer_21_1.png\n", "Saving slicer 2 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_9/slicer_21_2.png\n", "Saving slicer 3 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_9/slicer_21_3.png\n", "Saving slicer 4 for patient 0000293387 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000293387_9/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000293387.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287095/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287095/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287095/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287095/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287095/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287095/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287095/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287095/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [12, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "19\n", "19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_1/slicer_29_1.png\n", "Saving slicer 2 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_1/slicer_29_2.png\n", "Saving slicer 3 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_1/slicer_29_3.png\n", "Saving slicer 4 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_1/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000287095.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_2/slicer_31_1.png\n", "Saving slicer 2 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_2/slicer_31_2.png\n", "Saving slicer 3 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_2/slicer_31_3.png\n", "Saving slicer 4 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_2/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000287095.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_3/slicer_26_1.png\n", "Saving slicer 2 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_3/slicer_26_2.png\n", "Saving slicer 3 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_3/slicer_26_3.png\n", "Saving slicer 4 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_3/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000287095.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_4/slicer_32_1.png\n", "Saving slicer 2 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_4/slicer_32_2.png\n", "Saving slicer 3 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_4/slicer_32_3.png\n", "Saving slicer 4 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_4/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000287095.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_5/slicer_28_1.png\n", "Saving slicer 2 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_5/slicer_28_2.png\n", "Saving slicer 3 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_5/slicer_28_3.png\n", "Saving slicer 4 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_5/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000287095.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_6/slicer_30_1.png\n", "Saving slicer 2 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_6/slicer_30_2.png\n", "Saving slicer 3 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_6/slicer_30_3.png\n", "Saving slicer 4 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_6/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000287095.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_7/slicer_27_1.png\n", "Saving slicer 2 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_7/slicer_27_2.png\n", "Saving slicer 3 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_7/slicer_27_3.png\n", "Saving slicer 4 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_7/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000287095.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_8/slicer_25_1.png\n", "Saving slicer 2 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_8/slicer_25_2.png\n", "Saving slicer 3 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_8/slicer_25_3.png\n", "Saving slicer 4 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_8/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000287095.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_9/slicer_24_1.png\n", "Saving slicer 2 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_9/slicer_24_2.png\n", "Saving slicer 3 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_9/slicer_24_3.png\n", "Saving slicer 4 for patient 0000287095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000287095_9/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000287095.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000271157/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000271157/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000271157/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000271157/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271157/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271157/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271157/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271157/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [6, 7, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [6, 7, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "25\n", "25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_1/slicer_20_1.png\n", "Saving slicer 2 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_1/slicer_20_2.png\n", "Saving slicer 3 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_1/slicer_20_3.png\n", "Saving slicer 4 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_1/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000271157.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_2/slicer_29_1.png\n", "Saving slicer 2 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_2/slicer_29_2.png\n", "Saving slicer 3 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_2/slicer_29_3.png\n", "Saving slicer 4 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_2/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000271157.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_3/slicer_19_1.png\n", "Saving slicer 2 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_3/slicer_19_2.png\n", "Saving slicer 3 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_3/slicer_19_3.png\n", "Saving slicer 4 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_3/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000271157.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_4/slicer_18_1.png\n", "Saving slicer 2 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_4/slicer_18_2.png\n", "Saving slicer 3 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_4/slicer_18_3.png\n", "Saving slicer 4 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_4/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000271157.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_5/slicer_21_1.png\n", "Saving slicer 2 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_5/slicer_21_2.png\n", "Saving slicer 3 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_5/slicer_21_3.png\n", "Saving slicer 4 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_5/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000271157.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_6/slicer_17_1.png\n", "Saving slicer 2 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_6/slicer_17_2.png\n", "Saving slicer 3 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_6/slicer_17_3.png\n", "Saving slicer 4 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_6/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000271157.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_7/slicer_22_1.png\n", "Saving slicer 2 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_7/slicer_22_2.png\n", "Saving slicer 3 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_7/slicer_22_3.png\n", "Saving slicer 4 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_7/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000271157.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_8/slicer_27_1.png\n", "Saving slicer 2 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_8/slicer_27_2.png\n", "Saving slicer 3 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_8/slicer_27_3.png\n", "Saving slicer 4 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_8/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000271157.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_9/slicer_23_1.png\n", "Saving slicer 2 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_9/slicer_23_2.png\n", "Saving slicer 3 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_9/slicer_23_3.png\n", "Saving slicer 4 for patient 0000271157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000271157_9/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000271157.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000278621/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000278621/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000278621/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000278621/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278621/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278621/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278621/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278621/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "26\n", "26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_1/slicer_27_1.png\n", "Saving slicer 2 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_1/slicer_27_2.png\n", "Saving slicer 3 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_1/slicer_27_3.png\n", "Saving slicer 4 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_1/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000278621.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_2/slicer_25_1.png\n", "Saving slicer 2 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_2/slicer_25_2.png\n", "Saving slicer 3 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_2/slicer_25_3.png\n", "Saving slicer 4 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_2/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000278621.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_3/slicer_29_1.png\n", "Saving slicer 2 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_3/slicer_29_2.png\n", "Saving slicer 3 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_3/slicer_29_3.png\n", "Saving slicer 4 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_3/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000278621.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_4/slicer_26_1.png\n", "Saving slicer 2 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_4/slicer_26_2.png\n", "Saving slicer 3 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_4/slicer_26_3.png\n", "Saving slicer 4 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_4/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000278621.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_5/slicer_28_1.png\n", "Saving slicer 2 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_5/slicer_28_2.png\n", "Saving slicer 3 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_5/slicer_28_3.png\n", "Saving slicer 4 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_5/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000278621.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_6/slicer_30_1.png\n", "Saving slicer 2 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_6/slicer_30_2.png\n", "Saving slicer 3 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_6/slicer_30_3.png\n", "Saving slicer 4 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_6/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000278621.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_7/slicer_24_1.png\n", "Saving slicer 2 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_7/slicer_24_2.png\n", "Saving slicer 3 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_7/slicer_24_3.png\n", "Saving slicer 4 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_7/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000278621.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [31] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [31] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_8/slicer_31_1.png\n", "Saving slicer 2 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_8/slicer_31_2.png\n", "Saving slicer 3 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_8/slicer_31_3.png\n", "Saving slicer 4 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_8/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000278621.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_9/slicer_17_1.png\n", "Saving slicer 2 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_9/slicer_17_2.png\n", "Saving slicer 3 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_9/slicer_17_3.png\n", "Saving slicer 4 for patient 0000278621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000278621_9/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000278621.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000264822/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000264822/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000264822/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000264822/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264822/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264822/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264822/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264822/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [8, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29]\n", "19\n", "19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_1/slicer_28_1.png\n", "Saving slicer 2 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_1/slicer_28_2.png\n", "Saving slicer 3 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_1/slicer_28_3.png\n", "Saving slicer 4 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_1/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000264822.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_2/slicer_19_1.png\n", "Saving slicer 2 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_2/slicer_19_2.png\n", "Saving slicer 3 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_2/slicer_19_3.png\n", "Saving slicer 4 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_2/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000264822.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_3/slicer_27_1.png\n", "Saving slicer 2 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_3/slicer_27_2.png\n", "Saving slicer 3 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_3/slicer_27_3.png\n", "Saving slicer 4 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_3/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000264822.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_4/slicer_25_1.png\n", "Saving slicer 2 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_4/slicer_25_2.png\n", "Saving slicer 3 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_4/slicer_25_3.png\n", "Saving slicer 4 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_4/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000264822.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_5/slicer_26_1.png\n", "Saving slicer 2 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_5/slicer_26_2.png\n", "Saving slicer 3 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_5/slicer_26_3.png\n", "Saving slicer 4 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_5/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000264822.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_6/slicer_18_1.png\n", "Saving slicer 2 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_6/slicer_18_2.png\n", "Saving slicer 3 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_6/slicer_18_3.png\n", "Saving slicer 4 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_6/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000264822.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_7/slicer_20_1.png\n", "Saving slicer 2 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_7/slicer_20_2.png\n", "Saving slicer 3 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_7/slicer_20_3.png\n", "Saving slicer 4 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_7/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000264822.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_8/slicer_17_1.png\n", "Saving slicer 2 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_8/slicer_17_2.png\n", "Saving slicer 3 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_8/slicer_17_3.png\n", "Saving slicer 4 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_8/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000264822.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_9/slicer_21_1.png\n", "Saving slicer 2 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_9/slicer_21_2.png\n", "Saving slicer 3 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_9/slicer_21_3.png\n", "Saving slicer 4 for patient 0000264822 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000264822_9/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000264822.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297492/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297492/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297492/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297492/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297492/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297492/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297492/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297492/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [17, 18, 19, 20, 23, 24, 25, 26]\n", "After T2 ROI slices: [17, 18, 19, 20, 23, 24, 25, 26]\n", "18\n", "18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [27] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [27] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_1/slicer_27_1.png\n", "Saving slicer 2 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_1/slicer_27_2.png\n", "Saving slicer 3 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_1/slicer_27_3.png\n", "Saving slicer 4 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_1/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000297492.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_2/slicer_26_1.png\n", "Saving slicer 2 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_2/slicer_26_2.png\n", "Saving slicer 3 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_2/slicer_26_3.png\n", "Saving slicer 4 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_2/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000297492.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [28] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [28] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_3/slicer_28_1.png\n", "Saving slicer 2 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_3/slicer_28_2.png\n", "Saving slicer 3 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_3/slicer_28_3.png\n", "Saving slicer 4 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_3/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000297492.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_4/slicer_17_1.png\n", "Saving slicer 2 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_4/slicer_17_2.png\n", "Saving slicer 3 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_4/slicer_17_3.png\n", "Saving slicer 4 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_4/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000297492.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_5/slicer_25_1.png\n", "Saving slicer 2 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_5/slicer_25_2.png\n", "Saving slicer 3 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_5/slicer_25_3.png\n", "Saving slicer 4 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_5/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000297492.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_6/slicer_23_1.png\n", "Saving slicer 2 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_6/slicer_23_2.png\n", "Saving slicer 3 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_6/slicer_23_3.png\n", "Saving slicer 4 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_6/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000297492.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_7/slicer_24_1.png\n", "Saving slicer 2 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_7/slicer_24_2.png\n", "Saving slicer 3 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_7/slicer_24_3.png\n", "Saving slicer 4 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_7/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000297492.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_8/slicer_15_1.png\n", "Saving slicer 2 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_8/slicer_15_2.png\n", "Saving slicer 3 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_8/slicer_15_3.png\n", "Saving slicer 4 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_8/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000297492.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_9/slicer_29_1.png\n", "Saving slicer 2 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_9/slicer_29_2.png\n", "Saving slicer 3 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_9/slicer_29_3.png\n", "Saving slicer 4 for patient 0000297492 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000297492_9/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000297492.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267209/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267209/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267209/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267209/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267209/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267209/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267209/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267209/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 19, 20, 21, 22, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [18, 19, 20, 21, 22, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [26, 27, 28, 29, 30, 31]\n", "13\n", "13\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_1/slicer_30_1.png\n", "Saving slicer 2 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_1/slicer_30_2.png\n", "Saving slicer 3 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_1/slicer_30_3.png\n", "Saving slicer 4 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_1/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000267209.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_2/slicer_29_1.png\n", "Saving slicer 2 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_2/slicer_29_2.png\n", "Saving slicer 3 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_2/slicer_29_3.png\n", "Saving slicer 4 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_2/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000267209.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_3/slicer_31_1.png\n", "Saving slicer 2 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_3/slicer_31_2.png\n", "Saving slicer 3 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_3/slicer_31_3.png\n", "Saving slicer 4 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_3/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000267209.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_4/slicer_28_1.png\n", "Saving slicer 2 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_4/slicer_28_2.png\n", "Saving slicer 3 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_4/slicer_28_3.png\n", "Saving slicer 4 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_4/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000267209.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_5/slicer_32_1.png\n", "Saving slicer 2 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_5/slicer_32_2.png\n", "Saving slicer 3 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_5/slicer_32_3.png\n", "Saving slicer 4 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_5/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000267209.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [33] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [33] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_6/slicer_33_1.png\n", "Saving slicer 2 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_6/slicer_33_2.png\n", "Saving slicer 3 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_6/slicer_33_3.png\n", "Saving slicer 4 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_6/slicer_33_4.png\n", "Successfully saved 4 slices for patient 0000267209.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_7/slicer_27_1.png\n", "Saving slicer 2 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_7/slicer_27_2.png\n", "Saving slicer 3 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_7/slicer_27_3.png\n", "Saving slicer 4 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_7/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000267209.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_8/slicer_26_1.png\n", "Saving slicer 2 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_8/slicer_26_2.png\n", "Saving slicer 3 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_8/slicer_26_3.png\n", "Saving slicer 4 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_8/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000267209.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_9/slicer_22_1.png\n", "Saving slicer 2 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_9/slicer_22_2.png\n", "Saving slicer 3 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_9/slicer_22_3.png\n", "Saving slicer 4 for patient 0000267209 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000267209_9/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000267209.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1113916/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1113916/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1113916/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1113916/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1113916/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1113916/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1113916/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1113916/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [9, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [9, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "22\n", "22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_1/slicer_25_1.png\n", "Saving slicer 2 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_1/slicer_25_2.png\n", "Saving slicer 3 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_1/slicer_25_3.png\n", "Saving slicer 4 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_1/slicer_25_4.png\n", "Successfully saved 4 slices for patient 00C1113916.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_2/slicer_26_1.png\n", "Saving slicer 2 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_2/slicer_26_2.png\n", "Saving slicer 3 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_2/slicer_26_3.png\n", "Saving slicer 4 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_2/slicer_26_4.png\n", "Successfully saved 4 slices for patient 00C1113916.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_3/slicer_23_1.png\n", "Saving slicer 2 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_3/slicer_23_2.png\n", "Saving slicer 3 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_3/slicer_23_3.png\n", "Saving slicer 4 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_3/slicer_23_4.png\n", "Successfully saved 4 slices for patient 00C1113916.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_4/slicer_24_1.png\n", "Saving slicer 2 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_4/slicer_24_2.png\n", "Saving slicer 3 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_4/slicer_24_3.png\n", "Saving slicer 4 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_4/slicer_24_4.png\n", "Successfully saved 4 slices for patient 00C1113916.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_5/slicer_27_1.png\n", "Saving slicer 2 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_5/slicer_27_2.png\n", "Saving slicer 3 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_5/slicer_27_3.png\n", "Saving slicer 4 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_5/slicer_27_4.png\n", "Successfully saved 4 slices for patient 00C1113916.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_6/slicer_28_1.png\n", "Saving slicer 2 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_6/slicer_28_2.png\n", "Saving slicer 3 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_6/slicer_28_3.png\n", "Saving slicer 4 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_6/slicer_28_4.png\n", "Successfully saved 4 slices for patient 00C1113916.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_7/slicer_29_1.png\n", "Saving slicer 2 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_7/slicer_29_2.png\n", "Saving slicer 3 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_7/slicer_29_3.png\n", "Saving slicer 4 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_7/slicer_29_4.png\n", "Successfully saved 4 slices for patient 00C1113916.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_8/slicer_22_1.png\n", "Saving slicer 2 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_8/slicer_22_2.png\n", "Saving slicer 3 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_8/slicer_22_3.png\n", "Saving slicer 4 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_8/slicer_22_4.png\n", "Successfully saved 4 slices for patient 00C1113916.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_9/slicer_21_1.png\n", "Saving slicer 2 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_9/slicer_21_2.png\n", "Saving slicer 3 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_9/slicer_21_3.png\n", "Saving slicer 4 for patient 00C1113916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/00C1113916_9/slicer_21_4.png\n", "Successfully saved 4 slices for patient 00C1113916.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298902/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298902/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298902/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298902/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298902/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298902/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298902/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298902/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "After T2 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "16\n", "16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_1/slicer_30_1.png\n", "Saving slicer 2 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_1/slicer_30_2.png\n", "Saving slicer 3 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_1/slicer_30_3.png\n", "Saving slicer 4 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_1/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000298902.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_2/slicer_29_1.png\n", "Saving slicer 2 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_2/slicer_29_2.png\n", "Saving slicer 3 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_2/slicer_29_3.png\n", "Saving slicer 4 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_2/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000298902.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_3/slicer_31_1.png\n", "Saving slicer 2 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_3/slicer_31_2.png\n", "Saving slicer 3 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_3/slicer_31_3.png\n", "Saving slicer 4 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_3/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000298902.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_4/slicer_28_1.png\n", "Saving slicer 2 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_4/slicer_28_2.png\n", "Saving slicer 3 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_4/slicer_28_3.png\n", "Saving slicer 4 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_4/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000298902.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_5/slicer_32_1.png\n", "Saving slicer 2 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_5/slicer_32_2.png\n", "Saving slicer 3 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_5/slicer_32_3.png\n", "Saving slicer 4 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_5/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000298902.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_6/slicer_27_1.png\n", "Saving slicer 2 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_6/slicer_27_2.png\n", "Saving slicer 3 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_6/slicer_27_3.png\n", "Saving slicer 4 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_6/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000298902.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_7/slicer_33_1.png\n", "Saving slicer 2 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_7/slicer_33_2.png\n", "Saving slicer 3 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_7/slicer_33_3.png\n", "Saving slicer 4 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_7/slicer_33_4.png\n", "Successfully saved 4 slices for patient 0000298902.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_8/slicer_26_1.png\n", "Saving slicer 2 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_8/slicer_26_2.png\n", "Saving slicer 3 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_8/slicer_26_3.png\n", "Saving slicer 4 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_8/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000298902.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_9/slicer_22_1.png\n", "Saving slicer 2 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_9/slicer_22_2.png\n", "Saving slicer 3 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_9/slicer_22_3.png\n", "Saving slicer 4 for patient 0000298902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000298902_9/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000298902.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282002/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282002/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282002/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282002/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282002/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282002/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282002/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282002/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "21\n", "21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_1/slicer_28_1.png\n", "Saving slicer 2 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_1/slicer_28_2.png\n", "Saving slicer 3 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_1/slicer_28_3.png\n", "Saving slicer 4 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_1/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000282002.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_2/slicer_27_1.png\n", "Saving slicer 2 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_2/slicer_27_2.png\n", "Saving slicer 3 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_2/slicer_27_3.png\n", "Saving slicer 4 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_2/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000282002.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_3/slicer_29_1.png\n", "Saving slicer 2 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_3/slicer_29_2.png\n", "Saving slicer 3 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_3/slicer_29_3.png\n", "Saving slicer 4 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_3/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000282002.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_4/slicer_26_1.png\n", "Saving slicer 2 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_4/slicer_26_2.png\n", "Saving slicer 3 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_4/slicer_26_3.png\n", "Saving slicer 4 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_4/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000282002.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_5/slicer_25_1.png\n", "Saving slicer 2 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_5/slicer_25_2.png\n", "Saving slicer 3 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_5/slicer_25_3.png\n", "Saving slicer 4 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_5/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000282002.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_6/slicer_24_1.png\n", "Saving slicer 2 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_6/slicer_24_2.png\n", "Saving slicer 3 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_6/slicer_24_3.png\n", "Saving slicer 4 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_6/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000282002.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_7/slicer_15_1.png\n", "Saving slicer 2 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_7/slicer_15_2.png\n", "Saving slicer 3 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_7/slicer_15_3.png\n", "Saving slicer 4 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_7/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000282002.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_8/slicer_30_1.png\n", "Saving slicer 2 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_8/slicer_30_2.png\n", "Saving slicer 3 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_8/slicer_30_3.png\n", "Saving slicer 4 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_8/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000282002.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_9/slicer_14_1.png\n", "Saving slicer 2 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_9/slicer_14_2.png\n", "Saving slicer 3 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_9/slicer_14_3.png\n", "Saving slicer 4 for patient 0000282002 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282002_9/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000282002.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245599/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245599/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245599/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245599/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245599/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245599/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245599/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245599/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "17\n", "17\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_1/slicer_29_1.png\n", "Saving slicer 2 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_1/slicer_29_2.png\n", "Saving slicer 3 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_1/slicer_29_3.png\n", "Saving slicer 4 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_1/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000245599.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_2/slicer_28_1.png\n", "Saving slicer 2 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_2/slicer_28_2.png\n", "Saving slicer 3 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_2/slicer_28_3.png\n", "Saving slicer 4 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_2/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000245599.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_3/slicer_30_1.png\n", "Saving slicer 2 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_3/slicer_30_2.png\n", "Saving slicer 3 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_3/slicer_30_3.png\n", "Saving slicer 4 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_3/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000245599.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_4/slicer_27_1.png\n", "Saving slicer 2 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_4/slicer_27_2.png\n", "Saving slicer 3 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_4/slicer_27_3.png\n", "Saving slicer 4 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_4/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000245599.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_5/slicer_26_1.png\n", "Saving slicer 2 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_5/slicer_26_2.png\n", "Saving slicer 3 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_5/slicer_26_3.png\n", "Saving slicer 4 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_5/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000245599.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_6/slicer_31_1.png\n", "Saving slicer 2 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_6/slicer_31_2.png\n", "Saving slicer 3 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_6/slicer_31_3.png\n", "Saving slicer 4 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_6/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000245599.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_7/slicer_25_1.png\n", "Saving slicer 2 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_7/slicer_25_2.png\n", "Saving slicer 3 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_7/slicer_25_3.png\n", "Saving slicer 4 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_7/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000245599.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_8/slicer_19_1.png\n", "Saving slicer 2 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_8/slicer_19_2.png\n", "Saving slicer 3 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_8/slicer_19_3.png\n", "Saving slicer 4 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_8/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000245599.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_9/slicer_20_1.png\n", "Saving slicer 2 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_9/slicer_20_2.png\n", "Saving slicer 3 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_9/slicer_20_3.png\n", "Saving slicer 4 for patient 0000245599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000245599_9/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000245599.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283283/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283283/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283283/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283283/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283283/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283283/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283283/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283283/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 26, 27, 28, 29]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 26, 27, 28, 29]\n", "13\n", "13\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_1/slicer_27_1.png\n", "Saving slicer 2 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_1/slicer_27_2.png\n", "Saving slicer 3 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_1/slicer_27_3.png\n", "Saving slicer 4 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_1/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000283283.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_2/slicer_29_1.png\n", "Saving slicer 2 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_2/slicer_29_2.png\n", "Saving slicer 3 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_2/slicer_29_3.png\n", "Saving slicer 4 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_2/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000283283.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_3/slicer_28_1.png\n", "Saving slicer 2 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_3/slicer_28_2.png\n", "Saving slicer 3 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_3/slicer_28_3.png\n", "Saving slicer 4 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_3/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000283283.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_4/slicer_26_1.png\n", "Saving slicer 2 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_4/slicer_26_2.png\n", "Saving slicer 3 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_4/slicer_26_3.png\n", "Saving slicer 4 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_4/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000283283.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_5/slicer_17_1.png\n", "Saving slicer 2 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_5/slicer_17_2.png\n", "Saving slicer 3 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_5/slicer_17_3.png\n", "Saving slicer 4 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_5/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000283283.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_6/slicer_20_1.png\n", "Saving slicer 2 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_6/slicer_20_2.png\n", "Saving slicer 3 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_6/slicer_20_3.png\n", "Saving slicer 4 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_6/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000283283.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_7/slicer_19_1.png\n", "Saving slicer 2 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_7/slicer_19_2.png\n", "Saving slicer 3 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_7/slicer_19_3.png\n", "Saving slicer 4 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_7/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000283283.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_8/slicer_18_1.png\n", "Saving slicer 2 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_8/slicer_18_2.png\n", "Saving slicer 3 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_8/slicer_18_3.png\n", "Saving slicer 4 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_8/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000283283.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [25] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [25] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_9/slicer_25_1.png\n", "Saving slicer 2 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_9/slicer_25_2.png\n", "Saving slicer 3 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_9/slicer_25_3.png\n", "Saving slicer 4 for patient 0000283283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000283283_9/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000283283.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282281/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282281/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282281/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282281/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282281/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282281/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282281/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282281/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31, 34]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31, 34]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "26\n", "26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_1/slicer_18_1.png\n", "Saving slicer 2 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_1/slicer_18_2.png\n", "Saving slicer 3 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_1/slicer_18_3.png\n", "Saving slicer 4 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_1/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000282281.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_2/slicer_17_1.png\n", "Saving slicer 2 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_2/slicer_17_2.png\n", "Saving slicer 3 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_2/slicer_17_3.png\n", "Saving slicer 4 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_2/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000282281.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_3/slicer_29_1.png\n", "Saving slicer 2 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_3/slicer_29_2.png\n", "Saving slicer 3 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_3/slicer_29_3.png\n", "Saving slicer 4 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_3/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000282281.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_4/slicer_15_1.png\n", "Saving slicer 2 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_4/slicer_15_2.png\n", "Saving slicer 3 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_4/slicer_15_3.png\n", "Saving slicer 4 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_4/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000282281.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_5/slicer_30_1.png\n", "Saving slicer 2 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_5/slicer_30_2.png\n", "Saving slicer 3 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_5/slicer_30_3.png\n", "Saving slicer 4 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_5/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000282281.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_6/slicer_16_1.png\n", "Saving slicer 2 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_6/slicer_16_2.png\n", "Saving slicer 3 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_6/slicer_16_3.png\n", "Saving slicer 4 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_6/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000282281.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_7/slicer_28_1.png\n", "Saving slicer 2 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_7/slicer_28_2.png\n", "Saving slicer 3 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_7/slicer_28_3.png\n", "Saving slicer 4 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_7/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000282281.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_8/slicer_14_1.png\n", "Saving slicer 2 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_8/slicer_14_2.png\n", "Saving slicer 3 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_8/slicer_14_3.png\n", "Saving slicer 4 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_8/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000282281.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_9/slicer_13_1.png\n", "Saving slicer 2 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_9/slicer_13_2.png\n", "Saving slicer 3 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_9/slicer_13_3.png\n", "Saving slicer 4 for patient 0000282281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000282281_9/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000282281.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000269151/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000269151/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000269151/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000269151/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269151/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269151/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269151/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269151/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [0, 1, 2, 3, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [0, 1, 2, 3, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27]\n", "28\n", "28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_1/slicer_25_1.png\n", "Saving slicer 2 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_1/slicer_25_2.png\n", "Saving slicer 3 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_1/slicer_25_3.png\n", "Saving slicer 4 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_1/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000269151.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_2/slicer_24_1.png\n", "Saving slicer 2 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_2/slicer_24_2.png\n", "Saving slicer 3 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_2/slicer_24_3.png\n", "Saving slicer 4 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_2/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000269151.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_3/slicer_26_1.png\n", "Saving slicer 2 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_3/slicer_26_2.png\n", "Saving slicer 3 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_3/slicer_26_3.png\n", "Saving slicer 4 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_3/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000269151.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_4/slicer_17_1.png\n", "Saving slicer 2 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_4/slicer_17_2.png\n", "Saving slicer 3 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_4/slicer_17_3.png\n", "Saving slicer 4 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_4/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000269151.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_5/slicer_15_1.png\n", "Saving slicer 2 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_5/slicer_15_2.png\n", "Saving slicer 3 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_5/slicer_15_3.png\n", "Saving slicer 4 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_5/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000269151.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_6/slicer_14_1.png\n", "Saving slicer 2 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_6/slicer_14_2.png\n", "Saving slicer 3 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_6/slicer_14_3.png\n", "Saving slicer 4 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_6/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000269151.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_7/slicer_16_1.png\n", "Saving slicer 2 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_7/slicer_16_2.png\n", "Saving slicer 3 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_7/slicer_16_3.png\n", "Saving slicer 4 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_7/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000269151.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_8/slicer_18_1.png\n", "Saving slicer 2 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_8/slicer_18_2.png\n", "Saving slicer 3 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_8/slicer_18_3.png\n", "Saving slicer 4 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_8/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000269151.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_9/slicer_23_1.png\n", "Saving slicer 2 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_9/slicer_23_2.png\n", "Saving slicer 3 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_9/slicer_23_3.png\n", "Saving slicer 4 for patient 0000269151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000269151_9/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000269151.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000242134/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000242134/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000242134/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000242134/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242134/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242134/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242134/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242134/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31]\n", "19\n", "19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_1/slicer_30_1.png\n", "Saving slicer 2 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_1/slicer_30_2.png\n", "Saving slicer 3 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_1/slicer_30_3.png\n", "Saving slicer 4 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_1/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000242134.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_2/slicer_31_1.png\n", "Saving slicer 2 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_2/slicer_31_2.png\n", "Saving slicer 3 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_2/slicer_31_3.png\n", "Saving slicer 4 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_2/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000242134.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_3/slicer_29_1.png\n", "Saving slicer 2 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_3/slicer_29_2.png\n", "Saving slicer 3 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_3/slicer_29_3.png\n", "Saving slicer 4 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_3/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000242134.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_4/slicer_28_1.png\n", "Saving slicer 2 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_4/slicer_28_2.png\n", "Saving slicer 3 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_4/slicer_28_3.png\n", "Saving slicer 4 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_4/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000242134.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_5/slicer_32_1.png\n", "Saving slicer 2 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_5/slicer_32_2.png\n", "Saving slicer 3 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_5/slicer_32_3.png\n", "Saving slicer 4 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_5/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000242134.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_6/slicer_27_1.png\n", "Saving slicer 2 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_6/slicer_27_2.png\n", "Saving slicer 3 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_6/slicer_27_3.png\n", "Saving slicer 4 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_6/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000242134.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [33] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [33] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_7/slicer_33_1.png\n", "Saving slicer 2 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_7/slicer_33_2.png\n", "Saving slicer 3 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_7/slicer_33_3.png\n", "Saving slicer 4 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_7/slicer_33_4.png\n", "Successfully saved 4 slices for patient 0000242134.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_8/slicer_26_1.png\n", "Saving slicer 2 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_8/slicer_26_2.png\n", "Saving slicer 3 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_8/slicer_26_3.png\n", "Saving slicer 4 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_8/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000242134.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_9/slicer_19_1.png\n", "Saving slicer 2 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_9/slicer_19_2.png\n", "Saving slicer 3 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_9/slicer_19_3.png\n", "Saving slicer 4 for patient 0000242134 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000242134_9/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000242134.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000237435/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000237435/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000237435/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000237435/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237435/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237435/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237435/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237435/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [16, 17, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31]\n", "11\n", "11\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_1/slicer_29_1.png\n", "Saving slicer 2 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_1/slicer_29_2.png\n", "Saving slicer 3 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_1/slicer_29_3.png\n", "Saving slicer 4 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_1/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000237435.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_2/slicer_30_1.png\n", "Saving slicer 2 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_2/slicer_30_2.png\n", "Saving slicer 3 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_2/slicer_30_3.png\n", "Saving slicer 4 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_2/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000237435.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_3/slicer_25_1.png\n", "Saving slicer 2 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_3/slicer_25_2.png\n", "Saving slicer 3 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_3/slicer_25_3.png\n", "Saving slicer 4 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_3/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000237435.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_4/slicer_27_1.png\n", "Saving slicer 2 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_4/slicer_27_2.png\n", "Saving slicer 3 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_4/slicer_27_3.png\n", "Saving slicer 4 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_4/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000237435.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_5/slicer_26_1.png\n", "Saving slicer 2 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_5/slicer_26_2.png\n", "Saving slicer 3 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_5/slicer_26_3.png\n", "Saving slicer 4 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_5/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000237435.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_6/slicer_28_1.png\n", "Saving slicer 2 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_6/slicer_28_2.png\n", "Saving slicer 3 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_6/slicer_28_3.png\n", "Saving slicer 4 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_6/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000237435.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_7/slicer_31_1.png\n", "Saving slicer 2 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_7/slicer_31_2.png\n", "Saving slicer 3 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_7/slicer_31_3.png\n", "Saving slicer 4 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_7/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000237435.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_8/slicer_24_1.png\n", "Saving slicer 2 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_8/slicer_24_2.png\n", "Saving slicer 3 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_8/slicer_24_3.png\n", "Saving slicer 4 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_8/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000237435.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_9/slicer_17_1.png\n", "Saving slicer 2 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_9/slicer_17_2.png\n", "Saving slicer 3 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_9/slicer_17_3.png\n", "Saving slicer 4 for patient 0000237435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000237435_9/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000237435.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274588/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274588/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274588/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274588/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274588/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274588/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274588/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274588/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "19\n", "19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_1/slicer_27_1.png\n", "Saving slicer 2 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_1/slicer_27_2.png\n", "Saving slicer 3 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_1/slicer_27_3.png\n", "Saving slicer 4 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_1/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000274588.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_2/slicer_26_1.png\n", "Saving slicer 2 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_2/slicer_26_2.png\n", "Saving slicer 3 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_2/slicer_26_3.png\n", "Saving slicer 4 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_2/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000274588.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_3/slicer_25_1.png\n", "Saving slicer 2 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_3/slicer_25_2.png\n", "Saving slicer 3 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_3/slicer_25_3.png\n", "Saving slicer 4 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_3/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000274588.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [28] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [28] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_4/slicer_28_1.png\n", "Saving slicer 2 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_4/slicer_28_2.png\n", "Saving slicer 3 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_4/slicer_28_3.png\n", "Saving slicer 4 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_4/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000274588.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_5/slicer_24_1.png\n", "Saving slicer 2 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_5/slicer_24_2.png\n", "Saving slicer 3 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_5/slicer_24_3.png\n", "Saving slicer 4 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_5/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000274588.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_6/slicer_23_1.png\n", "Saving slicer 2 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_6/slicer_23_2.png\n", "Saving slicer 3 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_6/slicer_23_3.png\n", "Saving slicer 4 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_6/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000274588.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_7/slicer_18_1.png\n", "Saving slicer 2 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_7/slicer_18_2.png\n", "Saving slicer 3 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_7/slicer_18_3.png\n", "Saving slicer 4 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_7/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000274588.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_8/slicer_16_1.png\n", "Saving slicer 2 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_8/slicer_16_2.png\n", "Saving slicer 3 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_8/slicer_16_3.png\n", "Saving slicer 4 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_8/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000274588.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_9/slicer_22_1.png\n", "Saving slicer 2 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_9/slicer_22_2.png\n", "Saving slicer 3 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_9/slicer_22_3.png\n", "Saving slicer 4 for patient 0000274588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000274588_9/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000274588.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000275246/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000275246/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000275246/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000275246/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275246/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275246/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275246/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275246/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [16, 17, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [16, 17, 24, 25, 26, 27, 28]\n", "22\n", "22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_1/slicer_28_1.png\n", "Saving slicer 2 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_1/slicer_28_2.png\n", "Saving slicer 3 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_1/slicer_28_3.png\n", "Saving slicer 4 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_1/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000275246.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_2/slicer_27_1.png\n", "Saving slicer 2 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_2/slicer_27_2.png\n", "Saving slicer 3 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_2/slicer_27_3.png\n", "Saving slicer 4 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_2/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000275246.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_3/slicer_25_1.png\n", "Saving slicer 2 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_3/slicer_25_2.png\n", "Saving slicer 3 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_3/slicer_25_3.png\n", "Saving slicer 4 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_3/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000275246.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_4/slicer_29_1.png\n", "Saving slicer 2 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_4/slicer_29_2.png\n", "Saving slicer 3 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_4/slicer_29_3.png\n", "Saving slicer 4 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_4/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000275246.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_5/slicer_26_1.png\n", "Saving slicer 2 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_5/slicer_26_2.png\n", "Saving slicer 3 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_5/slicer_26_3.png\n", "Saving slicer 4 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_5/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000275246.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_6/slicer_19_1.png\n", "Saving slicer 2 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_6/slicer_19_2.png\n", "Saving slicer 3 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_6/slicer_19_3.png\n", "Saving slicer 4 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_6/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000275246.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_7/slicer_20_1.png\n", "Saving slicer 2 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_7/slicer_20_2.png\n", "Saving slicer 3 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_7/slicer_20_3.png\n", "Saving slicer 4 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_7/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000275246.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_8/slicer_24_1.png\n", "Saving slicer 2 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_8/slicer_24_2.png\n", "Saving slicer 3 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_8/slicer_24_3.png\n", "Saving slicer 4 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_8/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000275246.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_9/slicer_17_1.png\n", "Saving slicer 2 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_9/slicer_17_2.png\n", "Saving slicer 3 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_9/slicer_17_3.png\n", "Saving slicer 4 for patient 0000275246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000275246_9/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000275246.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000243616/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000243616/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000243616/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000243616/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243616/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243616/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243616/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243616/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29]\n", "19\n", "19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_1/slicer_29_1.png\n", "Saving slicer 2 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_1/slicer_29_2.png\n", "Saving slicer 3 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_1/slicer_29_3.png\n", "Saving slicer 4 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_1/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000243616.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_2/slicer_18_1.png\n", "Saving slicer 2 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_2/slicer_18_2.png\n", "Saving slicer 3 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_2/slicer_18_3.png\n", "Saving slicer 4 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_2/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000243616.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_3/slicer_17_1.png\n", "Saving slicer 2 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_3/slicer_17_2.png\n", "Saving slicer 3 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_3/slicer_17_3.png\n", "Saving slicer 4 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_3/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000243616.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_4/slicer_28_1.png\n", "Saving slicer 2 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_4/slicer_28_2.png\n", "Saving slicer 3 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_4/slicer_28_3.png\n", "Saving slicer 4 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_4/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000243616.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_5/slicer_16_1.png\n", "Saving slicer 2 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_5/slicer_16_2.png\n", "Saving slicer 3 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_5/slicer_16_3.png\n", "Saving slicer 4 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_5/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000243616.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [30] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Slice layer [30] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_6/slicer_30_1.png\n", "Saving slicer 2 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_6/slicer_30_2.png\n", "Saving slicer 3 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_6/slicer_30_3.png\n", "Saving slicer 4 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_6/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000243616.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_7/slicer_26_1.png\n", "Saving slicer 2 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_7/slicer_26_2.png\n", "Saving slicer 3 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_7/slicer_26_3.png\n", "Saving slicer 4 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_7/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000243616.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_8/slicer_27_1.png\n", "Saving slicer 2 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_8/slicer_27_2.png\n", "Saving slicer 3 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_8/slicer_27_3.png\n", "Saving slicer 4 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_8/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000243616.\n", "\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_9/slicer_15_1.png\n", "Saving slicer 2 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_9/slicer_15_2.png\n", "Saving slicer 3 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_9/slicer_15_3.png\n", "Saving slicer 4 for patient 0000243616 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226/0000243616_9/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000243616.\n", "\n" ] } ], "source": [ "#重采样的 图片文件的抽取 治疗前按照病灶区域的大小来选取前9张 对应治疗后的索引 放入9个目录 2025-0226 对像：conditate_train_positive['ID'] (115-40)*9=666\n", "import os \n", "import SimpleITK as sitk\n", "import numpy as np\n", "import random\n", "import matplotlib.pyplot as plt\n", "import nibabel as nib\n", "from skimage.transform import resize\n", "from matplotlib import patches\n", "import cv2\n", "import sys\n", "\n", "def load_images(image_path, mask_path):\n", " # 检查文件是否存在\n", " if not os.path.exists(image_path):\n", " raise FileNotFoundError(f\"Original MRI file not found: {image_path}\")\n", " if not os.path.exists(mask_path):\n", " raise FileNotFoundError(f\"ROI mask file not found: {mask_path}\")\n", " \n", " # 读取原始MRI图像和mask文件\n", " print(f\"Loading image from: {image_path}\")\n", " image = sitk.ReadImage(image_path) \n", " print(f\"Loading mask from: {mask_path}\")\n", " mask = sitk.ReadImage(mask_path)\n", "\n", " # 转换为数组\n", " image_array = sitk.GetArrayFromImage(image)\n", " mask_array = sitk.GetArrayFromImage(mask)\n", "\n", " print(f\"Image shape: {image_array.shape}, Mask shape: {mask_array.shape}\")\n", "\n", " return image_array, mask_array\n", "\n", "def get_roi_slicers_index(mask_array):\n", " # 获取包含ROI的层索引\n", " print(f\"Getting ROI slicers index...\")\n", " roi_slicers_index = [i for i in range(mask_array.shape[0]) if np.any(mask_array[i])]\n", "\n", " if not roi_slicers_index:\n", " print(\"No layers containing ROI, ending operation!\")\n", " return []\n", " \n", " return roi_slicers_index\n", "\n", "def save_slicers(base_output_dir, patient_id, slicer, slicer_index, slicer_number):\n", " # 在base_output_dir下创建每个病人的目录\n", " patient_dir = os.path.join(base_output_dir)\n", " os.makedirs(patient_dir, exist_ok=True)\n", "\n", " slicer = np.asarray(slicer)\n", " # 去除维度为1的维度\n", " slicer = np.squeeze(slicer)\n", "\n", " file_name = f\"slicer_{slicer_index}_{slicer_number}.png\"\n", " file_path = os.path.join(patient_dir, file_name)\n", "\n", " print(f\"Saving slicer {slicer_number} for patient {patient_id} at {file_path}\")\n", "\n", " # 保存图像\n", " fig, ax = plt.subplots() \n", " ax.imshow(slicer, cmap='gray') # 显示对应切片\n", " ax.axis('off') # 关闭坐标轴\n", " plt.tight_layout()\n", "\n", " # 保存切片为图像文件，去掉白色背景\n", " fig.savefig(file_path, bbox_inches='tight', pad_inches=0, transparent=True)\n", " plt.close(fig) # 关闭图像\n", " \n", "def extract_roi_slicers(image_array,mask_array, roi_slicers_index): \n", " # 提取包含ROI的切片\n", " roi_slicers = []\n", " \n", " original_image = image_array[roi_slicers_index, :, :].astype(np.float16)\n", "\n", " # 检查层数据是否为空\n", " if np.max(mask_array[roi_slicers_index]) == 0:\n", " print(f\"Slice layer {roi_slicers_index} is all 0, skipping extraction!\")\n", " original_image = image_array[roi_slicers_index]\n", " \n", " roi_slicers.append(original_image)\n", "\n", " print(f\"A total of {len(roi_slicers)} slices were extracted!\")\n", "\n", " return roi_slicers #会返回只有一个元素的list ，取出这个元素即可\n", "\n", "def get_roi_areas(mask_array,slicer_index):\n", " #计算每一层切片的病灶区域的大小(病灶区域中非零值的数量)\n", " return np.sum(mask_array[slicer_index]>0) \n", "\n", "def process_patient_data(base_dir, patient_id, base_output_dir):\n", "\n", " # 指定患者数据\n", " before_image_path_t1 = os.path.join(base_dir, 'Before', patient_id, 'T1.nii.gz')\n", " before_image_path_t2 = os.path.join(base_dir, 'Before', patient_id, 'T2.nii.gz')\n", " before_mask_path = os.path.join(base_dir, 'Before', patient_id, 'mask_all.nii.gz')\n", "\n", " after_image_path_t1 = os.path.join(base_dir, 'After_registed', patient_id, 'T1.nii.gz')\n", " after_image_path_t2 = os.path.join(base_dir, 'After_registed', patient_id, 'T2.nii.gz') \n", " after_mask_path = os.path.join(base_dir, 'After_registed', patient_id, 'mask_all.nii.gz')\n", " \n", " try:\n", " # 加载患者数据\n", " before_image_array_t1, before_mask_array = load_images(before_image_path_t1, before_mask_path)\n", " before_image_array_t2, _ = load_images(before_image_path_t2, before_mask_path)\n", "\n", " after_image_array_t1, after_mask_array = load_images(after_image_path_t1, after_mask_path)\n", " after_image_array_t2, _ = load_images(after_image_path_t2, after_mask_path)\n", " except FileNotFoundError as e:\n", " print(f\"Error: {e}\") # 打印错误信息\n", " return # 跳过当前病人的处理\n", " except Exception as e:\n", " print(f\"Unexpected error: {e}\")\n", " return\n", "\n", " # 获取包含ROI的层索引（返回列表）\n", " before_T1_ROI_slicers_index = get_roi_slicers_index(before_mask_array)\n", " before_T2_ROI_slicers_index = get_roi_slicers_index(before_mask_array)\n", "\n", " after_T1_ROI_slicers_index = get_roi_slicers_index(after_mask_array)\n", " after_T2_ROI_slicers_index = get_roi_slicers_index(after_mask_array)\n", "\n", " print(f\"Before T1 ROI slices: {before_T1_ROI_slicers_index}\")\n", " print(f\"Before T2 ROI slices: {before_T2_ROI_slicers_index}\")\n", "\n", " print(f\"After T1 ROI slices: {after_T1_ROI_slicers_index}\")\n", " print(f\"After T2 ROI slices: {after_T2_ROI_slicers_index}\")\n", "\n", " #根据病灶区域大小排序，选择前9个切片 \n", " before_T1_slicer_sizes = [(index, get_roi_areas(before_mask_array, index)) for index in before_T1_ROI_slicers_index] #返回列表\n", " before_T2_slicer_sizes = [(index, get_roi_areas(before_mask_array, index)) for index in before_T2_ROI_slicers_index] #返回列表\n", " #根据病灶区域大小降序排序（返回list)\n", " before_T1_slicer_sizes.sort(key=lambda x: x[1], reverse=True) #返回排序后的原始图片列表\n", " before_T2_slicer_sizes.sort(key=lambda x: x[1], reverse=True) \n", " \n", " # 如果切片数量不足9个，按顺序重复抽取\n", " top_before_T1_slicer_index = [x[0] for x in before_T1_slicer_sizes] # 先取所有可用的切片\n", " top_before_T2_slicer_index = [x[0] for x in before_T2_slicer_sizes]\n", "\n", " # 如果切片数量仍然不足9个，按顺序重复填充\n", " next_index_T1 = 0 # 初始化索引\n", " next_index_T2 = 0 # 初始化索引\n", "\n", " while len(top_before_T1_slicer_index) < 9:\n", " # 使用 next_index_T1 获取切片索引\n", " top_before_T1_slicer_index.append(before_T1_ROI_slicers_index[next_index_T1])\n", " # 更新 next_index_T1，确保索引在有效范围内\n", " next_index_T1 = (next_index_T1 + 1) % len(before_T1_ROI_slicers_index)\n", "\n", " while len(top_before_T2_slicer_index) < 9:\n", " # 使用 next_index_T2 获取切片索引\n", " top_before_T2_slicer_index.append(before_T2_ROI_slicers_index[next_index_T2])\n", " # 更新 next_index_T2，确保索引在有效范围内\n", " next_index_T2 = (next_index_T2 + 1) % len(before_T2_ROI_slicers_index)\n", "\n", " \n", " print(len(top_before_T1_slicer_index))\n", " print(len(top_before_T2_slicer_index))\n", " \n", " #保存每组切片\n", " for i in range(9): \n", " # 确保索引 i 在范围内\n", " if i >= len(top_before_T1_slicer_index) or i >= len(top_before_T2_slicer_index):\n", " print(f\"Error: Index {i} out of range for patient {patient_id}\")\n", " sys.exit() # 如果索引超出范围，终止程序\n", " \n", " # 提取当前组的切片（按顺序提取即可）\n", " if i < len(top_before_T1_slicer_index):\n", " top_before_T1_slicer = extract_roi_slicers(before_image_array_t1,before_mask_array, [top_before_T1_slicer_index[i]])[0]\n", " else:\n", " print(f\"Invalid index: {i}\")\n", " continue # 或者使用适当的错误处理方法\n", " \n", " top_before_T2_slicer = extract_roi_slicers(before_image_array_t2,before_mask_array, [top_before_T2_slicer_index[i]])[0]\n", " \n", " top_after_T1_slicer = extract_roi_slicers(after_image_array_t1, after_mask_array,[top_before_T1_slicer_index[i]])[0]\n", " top_after_T2_slicer = extract_roi_slicers(after_image_array_t2, after_mask_array,[top_before_T2_slicer_index[i]])[0]\n", "\n", " #创建保存的目录\n", " patient_group_dir = os.path.join(base_output_dir, f\"{patient_id}_{i+1}\")\n", " os.makedirs(patient_group_dir, exist_ok=True)\n", " \n", " # 保存切片\n", " save_slicers(patient_group_dir, patient_id,top_before_T1_slicer, top_before_T1_slicer_index[i], slicer_number=1)\n", " save_slicers(patient_group_dir, patient_id,top_before_T2_slicer, top_before_T2_slicer_index[i], slicer_number=2)\n", " \n", " save_slicers(patient_group_dir, patient_id,top_after_T1_slicer, top_before_T1_slicer_index[i], slicer_number=3) \n", " save_slicers(patient_group_dir, patient_id,top_after_T2_slicer, top_before_T2_slicer_index[i], slicer_number=4)\n", "\n", "\n", " # 检查是否保存了 4 个切片\n", " saved_slicers = [f for f in os.listdir(os.path.join(base_output_dir,patient_group_dir)) if f.endswith('.png')]\n", " \n", " if len(saved_slicers) != 4:\n", " print(f\"Error: Patient {patient_id} saved {len(saved_slicers)} slices. Expected 4 slicers. Exiting process.\")\n", " return\n", " \n", " print(f\"Successfully saved 4 slices for patient {patient_id}.\\n\")\n", "\n", "def main():\n", " base_dir = '/home/xtm/kyr_data/original_data/combined' #原始文件路径\n", " base_output_dir = '/home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226'\n", " patient_slice_count = {}\n", " \n", " # 获取需要处理的病人ID列表\n", " patient_ids_to_process = conditate_train_positive['ID'].tolist() # 从DataFrame的ID列中获取病人ID列表\n", "\n", " patient_folders = [f for f in os.listdir(os.path.join(base_dir, 'Before')) if os.path.isdir(os.path.join(base_dir, 'Before', f)) and f in patient_ids_to_process]\n", " print(len(patient_folders)) \n", " \n", " for patient_id in patient_folders:\n", " process_patient_data(base_dir, patient_id, base_output_dir)\n", " \n", " for patient_id, count in patient_slice_count.items():\n", " if count != 4:\n", " print(f\"Patient {patient_id}: {count} slices\")\n", " \n", "\n", "if __name__ == '__main__':\n", " main()" ] }, { "cell_type": "code", "execution_count": 8, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_combine_666__positive/0000269151_1/0000269151_1.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_combine_666__positive/0000245870_8/0000245870_8.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_combine_666__positive/0000250277_2/0000250277_2.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_combine_666__positive/0000271157_3/0000271157_3.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_combine_666__positive/0000264822_4/0000264822_4.png\n", "successfully: 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"successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_combine_666__positive/0000305452_6/0000305452_6.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_combine_666__positive/0000256497_4/0000256497_4.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_combine_666__positive/0000241900_4/0000241900_4.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_combine_666__positive/0000283283_5/0000283283_5.png\n" ] } ], "source": [ "#组合每个目录下的四张图片，并保存为单个图像 2025-0226 666个子目录\n", "import os\n", "from PIL import Image\n", "\n", "base_dir = '/home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_resample-4-png-0226'\n", "output_base_dir = '/home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_combine_666__positive'\n", "#遍历病人目录\n", "\n", "for patient_dir in os.listdir(base_dir):\n", " patient_path = os.path.join(base_dir,patient_dir)\n", "\n", " #确保是一个目录\n", " if os.path.isdir (patient_path):\n", " #按照编号来找图片\n", " png_paths = {}\n", "\n", " for file_name in os.listdir(patient_path):\n", " if file_name.endswith('.png') and \"slicer\" in file_name:\n", " #提取文件中的最后数字部分来生成路径\n", " parts = file_name.split('_')\n", " if len(parts)==3:\n", " png_number = int(parts[2].split('.')[0]) #获取最后一个数字\n", " png_paths[png_number] = os.path.join(patient_path,file_name) \n", "\n", " #检查是否找到了四张png\n", " if len(png_paths)==4 and all(i in png_paths for i in range(1,5)):\n", "\n", " #打开所有图片\n", " pngs = [Image.open(png_paths[i]) for i in range(1,5)] #返回图片对此昂，并储存在pngs列表中\n", "\n", " #获取图片模式\n", " mode = pngs[0].mode\n", "\n", " #获取任意一张图片的图片的宽度和高度\n", " widths,heights = pngs[0].size\n", "\n", "\n", " #创建新的大图 2*2\n", " combination_width = widths * 2 \n", " combination_height = heights * 2\n", "\n", " #创建空白的png 保持原始图片的模式\n", " combination_image = Image.new(mode, (combination_width,combination_height))\n", "\n", " #将图片放到大图上\n", " combination_image.paste(pngs[0],(0,0)) # 第一张图片放在左上角\n", " combination_image.paste(pngs[2],(widths,0))# 第三张图片放在右上角\n", " combination_image.paste(pngs[1],(0,heights)) # 第二张图片放在左下角\n", " combination_image.paste(pngs[3],(widths,heights)) # 第四张图片放在右下角\n", "\n", " #创建输出目录\n", " output_dir = os.path.join(output_base_dir,patient_dir)\n", " os.makedirs(output_dir,exist_ok=True)\n", "\n", " #保存组合后的图片\n", " output_path = os.path.join(output_dir, f\"{patient_dir}.png\")\n", " combination_image.save(output_path)\n", "\n", " print(f'successfully: {output_path}')\n", " else:\n", " print(f'patient {patient_dir} is less picture,skipping.')" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "661\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259562/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259562/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259562/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259562/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259562/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259562/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259562/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259562/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 14, 15, 16, 17, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [5, 14, 15, 16, 17, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [17, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [17, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 31\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [31] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000259562 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259562/slicer_15_1.png\n", "Saving slicer 2 for patient 0000259562 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259562/slicer_31_2.png\n", "Saving slicer 3 for patient 0000259562 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259562/slicer_15_3.png\n", "Saving slicer 4 for patient 0000259562 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259562/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000259562.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283797/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283797/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283797/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283797/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283797/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283797/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283797/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283797/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283797 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283797/slicer_29_1.png\n", "Saving slicer 2 for patient 0000283797 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283797/slicer_23_2.png\n", "Saving slicer 3 for patient 0000283797 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283797/slicer_29_3.png\n", "Saving slicer 4 for patient 0000283797 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283797/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000283797.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274789/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274789/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274789/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274789/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274789/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274789/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274789/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274789/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 32\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274789 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274789/slicer_15_1.png\n", "Saving slicer 2 for patient 0000274789 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274789/slicer_32_2.png\n", "Saving slicer 3 for patient 0000274789 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274789/slicer_15_3.png\n", "Saving slicer 4 for patient 0000274789 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274789/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000274789.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263765/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263765/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263765/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263765/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263765/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263765/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263765/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263765/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [14, 15, 16, 17, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [14, 15, 16, 17, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000263765 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263765/slicer_27_1.png\n", "Saving slicer 2 for patient 0000263765 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263765/slicer_15_2.png\n", "Saving slicer 3 for patient 0000263765 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263765/slicer_27_3.png\n", "Saving slicer 4 for patient 0000263765 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263765/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000263765.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000273157/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000273157/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000273157/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000273157/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273157/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273157/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273157/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273157/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 16, 17, 18, 19, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [12, 16, 17, 18, 19, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273157/slicer_24_1.png\n", "Saving slicer 2 for patient 0000273157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273157/slicer_27_2.png\n", "Saving slicer 3 for patient 0000273157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273157/slicer_24_3.png\n", "Saving slicer 4 for patient 0000273157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273157/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000273157.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266850/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266850/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266850/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266850/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266850/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266850/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266850/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266850/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266850 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266850/slicer_21_1.png\n", "Saving slicer 2 for patient 0000266850 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266850/slicer_29_2.png\n", "Saving slicer 3 for patient 0000266850 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266850/slicer_21_3.png\n", "Saving slicer 4 for patient 0000266850 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266850/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000266850.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268545/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268545/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268545/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268545/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268545/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268545/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268545/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268545/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [19, 20, 21, 22, 27, 28, 29, 30, 31, 32, 33, 34]\n", "Before T2 ROI slices: [19, 20, 21, 22, 27, 28, 29, 30, 31, 32, 33, 34]\n", "After T1 ROI slices: [28, 29, 30, 31, 32, 33, 34]\n", "After T2 ROI slices: [28, 29, 30, 31, 32, 33, 34]\n", "Random T1 slicer index chosen: 34\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000268545 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268545/slicer_34_1.png\n", "Saving slicer 2 for patient 0000268545 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268545/slicer_29_2.png\n", "Saving slicer 3 for patient 0000268545 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268545/slicer_34_3.png\n", "Saving slicer 4 for patient 0000268545 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268545/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000268545.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000243333/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000243333/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000243333/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000243333/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243333/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243333/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243333/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243333/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [8, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000243333 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000243333/slicer_22_1.png\n", "Saving slicer 2 for patient 0000243333 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000243333/slicer_27_2.png\n", "Saving slicer 3 for patient 0000243333 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000243333/slicer_22_3.png\n", "Saving slicer 4 for patient 0000243333 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000243333/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000243333.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000311300/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000311300/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000311300/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000311300/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000311300/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000311300/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000311300/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000311300/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [8, 9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [8, 9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000311300 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000311300/slicer_23_1.png\n", "Saving slicer 2 for patient 0000311300 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000311300/slicer_28_2.png\n", "Saving slicer 3 for patient 0000311300 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000311300/slicer_23_3.png\n", "Saving slicer 4 for patient 0000311300 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000311300/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000311300.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254531/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254531/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254531/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254531/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254531/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254531/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254531/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254531/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [9, 10, 11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [9, 10, 11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 6\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "Slice layer [6] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000254531 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254531/slicer_6_1.png\n", "Saving slicer 2 for patient 0000254531 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254531/slicer_17_2.png\n", "Saving slicer 3 for patient 0000254531 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254531/slicer_6_3.png\n", "Saving slicer 4 for patient 0000254531 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254531/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000254531.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263095/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263095/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263095/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263095/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263095/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263095/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263095/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263095/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [14] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000263095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263095/slicer_26_1.png\n", "Saving slicer 2 for patient 0000263095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263095/slicer_14_2.png\n", "Saving slicer 3 for patient 0000263095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263095/slicer_26_3.png\n", "Saving slicer 4 for patient 0000263095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263095/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000263095.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254594/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254594/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254594/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254594/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254594/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254594/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254594/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254594/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000254594 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254594/slicer_29_1.png\n", "Saving slicer 2 for patient 0000254594 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254594/slicer_27_2.png\n", "Saving slicer 3 for patient 0000254594 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254594/slicer_29_3.png\n", "Saving slicer 4 for patient 0000254594 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254594/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000254594.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000307229/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000307229/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000307229/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000307229/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307229/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307229/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307229/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307229/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000307229 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307229/slicer_17_1.png\n", "Saving slicer 2 for patient 0000307229 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307229/slicer_19_2.png\n", "Saving slicer 3 for patient 0000307229 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307229/slicer_17_3.png\n", "Saving slicer 4 for patient 0000307229 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307229/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000307229.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283067/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283067/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283067/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283067/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283067/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283067/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283067/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283067/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283067 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283067/slicer_23_1.png\n", "Saving slicer 2 for patient 0000283067 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283067/slicer_28_2.png\n", "Saving slicer 3 for patient 0000283067 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283067/slicer_23_3.png\n", "Saving slicer 4 for patient 0000283067 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283067/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000283067.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267125/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267125/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267125/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267125/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267125/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267125/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267125/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267125/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267125 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267125/slicer_20_1.png\n", "Saving slicer 2 for patient 0000267125 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267125/slicer_29_2.png\n", "Saving slicer 3 for patient 0000267125 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267125/slicer_20_3.png\n", "Saving slicer 4 for patient 0000267125 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267125/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000267125.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000265812/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000265812/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000265812/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000265812/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265812/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265812/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265812/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265812/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [15, 16, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [15, 16, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 11\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "Slice layer [11] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265812 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000265812/slicer_11_1.png\n", "Saving slicer 2 for patient 0000265812 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000265812/slicer_21_2.png\n", "Saving slicer 3 for patient 0000265812 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000265812/slicer_11_3.png\n", "Saving slicer 4 for patient 0000265812 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000265812/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000265812.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000246974/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000246974/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000246974/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000246974/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246974/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246974/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246974/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246974/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000246974 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246974/slicer_25_1.png\n", "Saving slicer 2 for patient 0000246974 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246974/slicer_27_2.png\n", "Saving slicer 3 for patient 0000246974 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246974/slicer_25_3.png\n", "Saving slicer 4 for patient 0000246974 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246974/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000246974.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000301533/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000301533/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000301533/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000301533/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301533/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301533/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301533/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301533/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000301533 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301533/slicer_18_1.png\n", "Saving slicer 2 for patient 0000301533 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301533/slicer_25_2.png\n", "Saving slicer 3 for patient 0000301533 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301533/slicer_18_3.png\n", "Saving slicer 4 for patient 0000301533 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301533/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000301533.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000273188/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000273188/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000273188/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000273188/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273188/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273188/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273188/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273188/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 13\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273188 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273188/slicer_17_1.png\n", "Saving slicer 2 for patient 0000273188 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273188/slicer_13_2.png\n", "Saving slicer 3 for patient 0000273188 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273188/slicer_17_3.png\n", "Saving slicer 4 for patient 0000273188 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273188/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000273188.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293746/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293746/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293746/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293746/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293746/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293746/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293746/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293746/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293746 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293746/slicer_13_1.png\n", "Saving slicer 2 for patient 0000293746 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293746/slicer_25_2.png\n", "Saving slicer 3 for patient 0000293746 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293746/slicer_13_3.png\n", "Saving slicer 4 for patient 0000293746 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293746/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000293746.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254368/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254368/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254368/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254368/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254368/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254368/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254368/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254368/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 30\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [30] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000254368 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254368/slicer_22_1.png\n", "Saving slicer 2 for patient 0000254368 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254368/slicer_30_2.png\n", "Saving slicer 3 for patient 0000254368 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254368/slicer_22_3.png\n", "Saving slicer 4 for patient 0000254368 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254368/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000254368.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280777/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280777/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280777/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280777/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280777/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280777/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280777/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280777/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [4, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [15, 16, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [15, 16, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280777 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280777/slicer_22_1.png\n", "Saving slicer 2 for patient 0000280777 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280777/slicer_22_2.png\n", "Saving slicer 3 for patient 0000280777 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280777/slicer_22_3.png\n", "Saving slicer 4 for patient 0000280777 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280777/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000280777.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297046/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297046/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297046/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297046/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297046/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297046/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297046/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297046/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [9, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297046 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297046/slicer_25_1.png\n", "Saving slicer 2 for patient 0000297046 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297046/slicer_26_2.png\n", "Saving slicer 3 for patient 0000297046 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297046/slicer_25_3.png\n", "Saving slicer 4 for patient 0000297046 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297046/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000297046.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287466/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287466/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287466/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287466/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287466/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287466/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287466/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287466/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287466 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287466/slicer_24_1.png\n", "Saving slicer 2 for patient 0000287466 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287466/slicer_28_2.png\n", "Saving slicer 3 for patient 0000287466 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287466/slicer_24_3.png\n", "Saving slicer 4 for patient 0000287466 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287466/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000287466.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000276384/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000276384/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000276384/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000276384/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276384/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276384/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276384/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276384/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 31\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000276384 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276384/slicer_31_1.png\n", "Saving slicer 2 for patient 0000276384 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276384/slicer_29_2.png\n", "Saving slicer 3 for patient 0000276384 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276384/slicer_31_3.png\n", "Saving slicer 4 for patient 0000276384 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276384/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000276384.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000252690/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000252690/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000252690/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000252690/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252690/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252690/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252690/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252690/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000252690 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000252690/slicer_21_1.png\n", "Saving slicer 2 for patient 0000252690 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000252690/slicer_17_2.png\n", "Saving slicer 3 for patient 0000252690 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000252690/slicer_21_3.png\n", "Saving slicer 4 for patient 0000252690 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000252690/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000252690.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000294160/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000294160/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000294160/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000294160/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294160/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294160/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294160/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294160/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [13, 14, 15, 17, 18, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [13, 14, 15, 17, 18, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 30\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000294160 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294160/slicer_13_1.png\n", "Saving slicer 2 for patient 0000294160 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294160/slicer_30_2.png\n", "Saving slicer 3 for patient 0000294160 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294160/slicer_13_3.png\n", "Saving slicer 4 for patient 0000294160 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294160/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000294160.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000306454/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000306454/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000306454/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000306454/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306454/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306454/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306454/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306454/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [14, 15, 17, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [14, 15, 17, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 31\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [31] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000306454 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306454/slicer_21_1.png\n", "Saving slicer 2 for patient 0000306454 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306454/slicer_31_2.png\n", "Saving slicer 3 for patient 0000306454 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306454/slicer_21_3.png\n", "Saving slicer 4 for patient 0000306454 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306454/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000306454.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000310015/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000310015/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000310015/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000310015/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310015/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310015/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310015/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310015/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [9, 10, 11, 12, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [9, 10, 11, 12, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [14] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000310015 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310015/slicer_13_1.png\n", "Saving slicer 2 for patient 0000310015 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310015/slicer_14_2.png\n", "Saving slicer 3 for patient 0000310015 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310015/slicer_13_3.png\n", "Saving slicer 4 for patient 0000310015 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310015/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000310015.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000262212/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000262212/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000262212/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000262212/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262212/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262212/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262212/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262212/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 5\n", "Random T2 slicer index chosen: 8\n", "A total of 1 slices were extracted!\n", "Slice layer [5] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [8] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000262212 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262212/slicer_5_1.png\n", "Saving slicer 2 for patient 0000262212 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262212/slicer_8_2.png\n", "Saving slicer 3 for patient 0000262212 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262212/slicer_5_3.png\n", "Saving slicer 4 for patient 0000262212 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262212/slicer_8_4.png\n", "Successfully saved 4 slices for patient 0000262212.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248317/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248317/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248317/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248317/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248317/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248317/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248317/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248317/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 20, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 20, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [13, 15, 16, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [13, 15, 16, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 9\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [9] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248317 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248317/slicer_25_1.png\n", "Saving slicer 2 for patient 0000248317 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248317/slicer_9_2.png\n", "Saving slicer 3 for patient 0000248317 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248317/slicer_25_3.png\n", "Saving slicer 4 for patient 0000248317 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248317/slicer_9_4.png\n", "Successfully saved 4 slices for patient 0000248317.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272558/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272558/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272558/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272558/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272558/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272558/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272558/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272558/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [5, 6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [11, 14, 15, 16, 17, 18, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [11, 14, 15, 16, 17, 18, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 12\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [12] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000272558 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272558/slicer_30_1.png\n", "Saving slicer 2 for patient 0000272558 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272558/slicer_12_2.png\n", "Saving slicer 3 for patient 0000272558 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272558/slicer_30_3.png\n", "Saving slicer 4 for patient 0000272558 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272558/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000272558.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000322644/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000322644/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000322644/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000322644/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000322644/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000322644/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000322644/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000322644/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000322644 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000322644/slicer_24_1.png\n", "Saving slicer 2 for patient 0000322644 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000322644/slicer_29_2.png\n", "Saving slicer 3 for patient 0000322644 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000322644/slicer_24_3.png\n", "Saving slicer 4 for patient 0000322644 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000322644/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000322644.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000269152/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000269152/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000269152/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000269152/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269152/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269152/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269152/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269152/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000269152 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269152/slicer_20_1.png\n", "Saving slicer 2 for patient 0000269152 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269152/slicer_21_2.png\n", "Saving slicer 3 for patient 0000269152 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269152/slicer_20_3.png\n", "Saving slicer 4 for patient 0000269152 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269152/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000269152.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249009/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249009/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249009/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249009/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249009/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249009/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249009/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249009/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249009 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249009/slicer_21_1.png\n", "Saving slicer 2 for patient 0000249009 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249009/slicer_15_2.png\n", "Saving slicer 3 for patient 0000249009 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249009/slicer_21_3.png\n", "Saving slicer 4 for patient 0000249009 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249009/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000249009.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000271193/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000271193/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000271193/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000271193/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271193/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271193/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271193/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271193/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000271193 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271193/slicer_18_1.png\n", "Saving slicer 2 for patient 0000271193 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271193/slicer_19_2.png\n", "Saving slicer 3 for patient 0000271193 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271193/slicer_18_3.png\n", "Saving slicer 4 for patient 0000271193 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271193/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000271193.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000244342/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000244342/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000244342/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000244342/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244342/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244342/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244342/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244342/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000244342 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244342/slicer_16_1.png\n", "Saving slicer 2 for patient 0000244342 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244342/slicer_15_2.png\n", "Saving slicer 3 for patient 0000244342 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244342/slicer_16_3.png\n", "Saving slicer 4 for patient 0000244342 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244342/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000244342.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000309315/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000309315/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000309315/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000309315/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309315/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309315/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309315/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309315/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [15, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [22, 23, 27, 28, 29, 30, 31, 32, 33]\n", "After T2 ROI slices: [22, 23, 27, 28, 29, 30, 31, 32, 33]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [25] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000309315 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309315/slicer_15_1.png\n", "Saving slicer 2 for patient 0000309315 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309315/slicer_25_2.png\n", "Saving slicer 3 for patient 0000309315 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309315/slicer_15_3.png\n", "Saving slicer 4 for patient 0000309315 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309315/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000309315.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000310972/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000310972/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000310972/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000310972/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310972/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310972/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310972/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310972/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [17, 18, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [18, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [18, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000310972 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310972/slicer_29_1.png\n", "Saving slicer 2 for patient 0000310972 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310972/slicer_28_2.png\n", "Saving slicer 3 for patient 0000310972 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310972/slicer_29_3.png\n", "Saving slicer 4 for patient 0000310972 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310972/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000310972.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000277448/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000277448/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000277448/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000277448/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277448/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277448/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277448/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277448/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000277448 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000277448/slicer_19_1.png\n", "Saving slicer 2 for patient 0000277448 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000277448/slicer_28_2.png\n", "Saving slicer 3 for patient 0000277448 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000277448/slicer_19_3.png\n", "Saving slicer 4 for patient 0000277448 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000277448/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000277448.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267775/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267775/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267775/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267775/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267775/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267775/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267775/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267775/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 20, 21, 22, 23, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36]\n", "Before T2 ROI slices: [13, 20, 21, 22, 23, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36]\n", "After T1 ROI slices: [18, 19, 20, 21, 22, 23, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36]\n", "After T2 ROI slices: [18, 19, 20, 21, 22, 23, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36]\n", "Random T1 slicer index chosen: 32\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267775 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267775/slicer_32_1.png\n", "Saving slicer 2 for patient 0000267775 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267775/slicer_22_2.png\n", "Saving slicer 3 for patient 0000267775 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267775/slicer_32_3.png\n", "Saving slicer 4 for patient 0000267775 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267775/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000267775.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000299912/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000299912/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000299912/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000299912/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299912/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299912/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299912/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299912/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000299912 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299912/slicer_28_1.png\n", "Saving slicer 2 for patient 0000299912 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299912/slicer_29_2.png\n", "Saving slicer 3 for patient 0000299912 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299912/slicer_28_3.png\n", "Saving slicer 4 for patient 0000299912 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299912/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000299912.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283230/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283230/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283230/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283230/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283230/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283230/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283230/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283230/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283230 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283230/slicer_20_1.png\n", "Saving slicer 2 for patient 0000283230 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283230/slicer_19_2.png\n", "Saving slicer 3 for patient 0000283230 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283230/slicer_20_3.png\n", "Saving slicer 4 for patient 0000283230 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283230/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000283230.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282593/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282593/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282593/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282593/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282593/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282593/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282593/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282593/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [9, 10, 11, 12, 15, 16, 17, 20, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [9, 10, 11, 12, 15, 16, 17, 20, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 11\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282593 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282593/slicer_11_1.png\n", "Saving slicer 2 for patient 0000282593 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282593/slicer_29_2.png\n", "Saving slicer 3 for patient 0000282593 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282593/slicer_11_3.png\n", "Saving slicer 4 for patient 0000282593 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282593/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000282593.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298786/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298786/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298786/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298786/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298786/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298786/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298786/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298786/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 8, 9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [5, 6, 7, 8, 9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [7, 8, 12, 13, 15, 16, 17, 18, 20, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [7, 8, 12, 13, 15, 16, 17, 18, 20, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 8\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [23] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298786 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298786/slicer_8_1.png\n", "Saving slicer 2 for patient 0000298786 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298786/slicer_23_2.png\n", "Saving slicer 3 for patient 0000298786 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298786/slicer_8_3.png\n", "Saving slicer 4 for patient 0000298786 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298786/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000298786.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000258560/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000258560/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000258560/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000258560/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258560/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258560/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258560/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258560/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258560 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258560/slicer_26_1.png\n", "Saving slicer 2 for patient 0000258560 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258560/slicer_25_2.png\n", "Saving slicer 3 for patient 0000258560 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258560/slicer_26_3.png\n", "Saving slicer 4 for patient 0000258560 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258560/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000258560.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000264601/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000264601/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000264601/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000264601/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264601/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264601/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264601/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264601/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 16, 17, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 16, 17, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [4, 5, 6, 7, 8, 16, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [4, 5, 6, 7, 8, 16, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000264601 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264601/slicer_21_1.png\n", "Saving slicer 2 for patient 0000264601 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264601/slicer_23_2.png\n", "Saving slicer 3 for patient 0000264601 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264601/slicer_21_3.png\n", "Saving slicer 4 for patient 0000264601 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264601/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000264601.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000288434/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000288434/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000288434/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000288434/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288434/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288434/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288434/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288434/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [17, 18, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [17, 18, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000288434 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288434/slicer_24_1.png\n", "Saving slicer 2 for patient 0000288434 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288434/slicer_23_2.png\n", "Saving slicer 3 for patient 0000288434 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288434/slicer_24_3.png\n", "Saving slicer 4 for patient 0000288434 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288434/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000288434.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295831/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295831/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295831/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295831/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295831/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295831/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295831/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295831/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [9, 10, 11, 12, 16, 17, 18, 19, 20, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [9, 10, 11, 12, 16, 17, 18, 19, 20, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295831 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295831/slicer_16_1.png\n", "Saving slicer 2 for patient 0000295831 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295831/slicer_15_2.png\n", "Saving slicer 3 for patient 0000295831 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295831/slicer_16_3.png\n", "Saving slicer 4 for patient 0000295831 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295831/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000295831.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000261696/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000261696/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000261696/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000261696/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261696/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261696/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261696/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261696/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [18, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000261696 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000261696/slicer_27_1.png\n", "Saving slicer 2 for patient 0000261696 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000261696/slicer_22_2.png\n", "Saving slicer 3 for patient 0000261696 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000261696/slicer_27_3.png\n", "Saving slicer 4 for patient 0000261696 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000261696/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000261696.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000299399/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000299399/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000299399/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000299399/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299399/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299399/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299399/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299399/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000299399 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299399/slicer_16_1.png\n", "Saving slicer 2 for patient 0000299399 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299399/slicer_22_2.png\n", "Saving slicer 3 for patient 0000299399 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299399/slicer_16_3.png\n", "Saving slicer 4 for patient 0000299399 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299399/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000299399.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255858/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255858/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255858/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255858/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255858/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255858/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255858/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255858/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [17, 18, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255858 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255858/slicer_28_1.png\n", "Saving slicer 2 for patient 0000255858 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255858/slicer_27_2.png\n", "Saving slicer 3 for patient 0000255858 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255858/slicer_28_3.png\n", "Saving slicer 4 for patient 0000255858 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255858/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000255858.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000301964/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000301964/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000301964/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000301964/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301964/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301964/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301964/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301964/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 8\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "Slice layer [8] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000301964 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301964/slicer_8_1.png\n", "Saving slicer 2 for patient 0000301964 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301964/slicer_15_2.png\n", "Saving slicer 3 for patient 0000301964 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301964/slicer_8_3.png\n", "Saving slicer 4 for patient 0000301964 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301964/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000301964.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274963/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274963/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274963/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274963/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274963/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274963/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274963/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274963/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [17, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [17, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274963 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274963/slicer_27_1.png\n", "Saving slicer 2 for patient 0000274963 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274963/slicer_16_2.png\n", "Saving slicer 3 for patient 0000274963 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274963/slicer_27_3.png\n", "Saving slicer 4 for patient 0000274963 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274963/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000274963.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274780/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274780/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274780/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274780/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274780/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274780/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274780/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274780/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274780 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274780/slicer_18_1.png\n", "Saving slicer 2 for patient 0000274780 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274780/slicer_24_2.png\n", "Saving slicer 3 for patient 0000274780 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274780/slicer_18_3.png\n", "Saving slicer 4 for patient 0000274780 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274780/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000274780.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272313/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272313/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272313/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272313/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272313/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272313/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272313/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272313/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [10, 11, 14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [10, 11, 14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 8\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [8] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000272313 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272313/slicer_21_1.png\n", "Saving slicer 2 for patient 0000272313 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272313/slicer_8_2.png\n", "Saving slicer 3 for patient 0000272313 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272313/slicer_21_3.png\n", "Saving slicer 4 for patient 0000272313 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272313/slicer_8_4.png\n", "Successfully saved 4 slices for patient 0000272313.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1135566/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1135566/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1135566/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1135566/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1135566/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1135566/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1135566/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1135566/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [10, 11, 12, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [10, 11, 12, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 9\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [9] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1135566 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1135566/slicer_24_1.png\n", "Saving slicer 2 for patient 00C1135566 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1135566/slicer_9_2.png\n", "Saving slicer 3 for patient 00C1135566 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1135566/slicer_24_3.png\n", "Saving slicer 4 for patient 00C1135566 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1135566/slicer_9_4.png\n", "Successfully saved 4 slices for patient 00C1135566.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000305897/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000305897/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000305897/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000305897/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305897/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305897/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305897/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305897/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [17, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [17, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000305897 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305897/slicer_26_1.png\n", "Saving slicer 2 for patient 0000305897 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305897/slicer_24_2.png\n", "Saving slicer 3 for patient 0000305897 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305897/slicer_26_3.png\n", "Saving slicer 4 for patient 0000305897 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305897/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000305897.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000285599/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000285599/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000285599/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000285599/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285599/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285599/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285599/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285599/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [21, 22, 23, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [21, 22, 23, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [21, 22, 23, 28, 29, 30]\n", "After T2 ROI slices: [21, 22, 23, 28, 29, 30]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000285599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285599/slicer_28_1.png\n", "Saving slicer 2 for patient 0000285599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285599/slicer_22_2.png\n", "Saving slicer 3 for patient 0000285599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285599/slicer_28_3.png\n", "Saving slicer 4 for patient 0000285599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285599/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000285599.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266399/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266399/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266399/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266399/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266399/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266399/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266399/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266399/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [5, 8, 9, 10, 11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [5, 8, 9, 10, 11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266399 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266399/slicer_18_1.png\n", "Saving slicer 2 for patient 0000266399 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266399/slicer_22_2.png\n", "Saving slicer 3 for patient 0000266399 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266399/slicer_18_3.png\n", "Saving slicer 4 for patient 0000266399 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266399/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000266399.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295708/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295708/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295708/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295708/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295708/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295708/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295708/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295708/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [4, 5, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [15, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [15, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295708 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295708/slicer_18_1.png\n", "Saving slicer 2 for patient 0000295708 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295708/slicer_18_2.png\n", "Saving slicer 3 for patient 0000295708 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295708/slicer_18_3.png\n", "Saving slicer 4 for patient 0000295708 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295708/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000295708.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259092/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259092/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259092/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259092/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259092/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259092/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259092/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259092/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000259092 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259092/slicer_15_1.png\n", "Saving slicer 2 for patient 0000259092 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259092/slicer_27_2.png\n", "Saving slicer 3 for patient 0000259092 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259092/slicer_15_3.png\n", "Saving slicer 4 for patient 0000259092 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259092/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000259092.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295076/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295076/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295076/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295076/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295076/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295076/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295076/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295076/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [13, 14, 17, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [13, 14, 17, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295076 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295076/slicer_22_1.png\n", "Saving slicer 2 for patient 0000295076 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295076/slicer_25_2.png\n", "Saving slicer 3 for patient 0000295076 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295076/slicer_22_3.png\n", "Saving slicer 4 for patient 0000295076 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295076/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000295076.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000309235/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000309235/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000309235/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000309235/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309235/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309235/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309235/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309235/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [7, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000309235 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309235/slicer_24_1.png\n", "Saving slicer 2 for patient 0000309235 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309235/slicer_20_2.png\n", "Saving slicer 3 for patient 0000309235 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309235/slicer_24_3.png\n", "Saving slicer 4 for patient 0000309235 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309235/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000309235.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000313698/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000313698/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000313698/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000313698/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000313698/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000313698/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000313698/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000313698/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [13, 14, 15, 17, 18, 19, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [13, 14, 15, 17, 18, 19, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000313698 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000313698/slicer_15_1.png\n", "Saving slicer 2 for patient 0000313698 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000313698/slicer_25_2.png\n", "Saving slicer 3 for patient 0000313698 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000313698/slicer_15_3.png\n", "Saving slicer 4 for patient 0000313698 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000313698/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000313698.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272922/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272922/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272922/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272922/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272922/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272922/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272922/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272922/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 25, 26, 27, 28]\n", "Before T2 ROI slices: [2, 3, 4, 5, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 25, 26, 27, 28]\n", "After T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 5\n", "Random T2 slicer index chosen: 3\n", "A total of 1 slices were extracted!\n", "Slice layer [5] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [3] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000272922 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272922/slicer_5_1.png\n", "Saving slicer 2 for patient 0000272922 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272922/slicer_3_2.png\n", "Saving slicer 3 for patient 0000272922 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272922/slicer_5_3.png\n", "Saving slicer 4 for patient 0000272922 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272922/slicer_3_4.png\n", "Successfully saved 4 slices for patient 0000272922.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266646/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266646/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266646/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266646/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266646/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266646/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266646/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266646/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 5, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [3, 4, 5, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 3\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [3] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266646 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266646/slicer_26_1.png\n", "Saving slicer 2 for patient 0000266646 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266646/slicer_3_2.png\n", "Saving slicer 3 for patient 0000266646 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266646/slicer_26_3.png\n", "Saving slicer 4 for patient 0000266646 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266646/slicer_3_4.png\n", "Successfully saved 4 slices for patient 0000266646.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000303945/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000303945/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000303945/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000303945/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000303945/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000303945/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000303945/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000303945/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 31\n", "A total of 1 slices were extracted!\n", "Slice layer [23] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000303945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000303945/slicer_23_1.png\n", "Saving slicer 2 for patient 0000303945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000303945/slicer_31_2.png\n", "Saving slicer 3 for patient 0000303945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000303945/slicer_23_3.png\n", "Saving slicer 4 for patient 0000303945 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000303945/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000303945.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300486/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300486/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300486/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300486/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300486/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300486/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300486/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300486/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [11, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [10, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [10, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000300486 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300486/slicer_26_1.png\n", "Saving slicer 2 for patient 0000300486 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300486/slicer_27_2.png\n", "Saving slicer 3 for patient 0000300486 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300486/slicer_26_3.png\n", "Saving slicer 4 for patient 0000300486 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300486/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000300486.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000310094/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000310094/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000310094/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000310094/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310094/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310094/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310094/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310094/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000310094 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310094/slicer_15_1.png\n", "Saving slicer 2 for patient 0000310094 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310094/slicer_23_2.png\n", "Saving slicer 3 for patient 0000310094 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310094/slicer_15_3.png\n", "Saving slicer 4 for patient 0000310094 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310094/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000310094.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1112580/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1112580/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1112580/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1112580/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1112580/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1112580/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1112580/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1112580/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1112580 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1112580/slicer_18_1.png\n", "Saving slicer 2 for patient 00C1112580 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1112580/slicer_24_2.png\n", "Saving slicer 3 for patient 00C1112580 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1112580/slicer_18_3.png\n", "Saving slicer 4 for patient 00C1112580 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1112580/slicer_24_4.png\n", "Successfully saved 4 slices for patient 00C1112580.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268618/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268618/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268618/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268618/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268618/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268618/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268618/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268618/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000268618 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268618/slicer_13_1.png\n", "Saving slicer 2 for patient 0000268618 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268618/slicer_19_2.png\n", "Saving slicer 3 for patient 0000268618 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268618/slicer_13_3.png\n", "Saving slicer 4 for patient 0000268618 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268618/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000268618.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000247914/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000247914/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000247914/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000247914/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247914/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247914/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247914/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247914/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 8\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000247914 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247914/slicer_8_1.png\n", "Saving slicer 2 for patient 0000247914 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247914/slicer_14_2.png\n", "Saving slicer 3 for patient 0000247914 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247914/slicer_8_3.png\n", "Saving slicer 4 for patient 0000247914 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247914/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000247914.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000237328/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000237328/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000237328/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000237328/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237328/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237328/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237328/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237328/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 11, 12, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [6, 7, 8, 11, 12, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [7, 8, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24]\n", "After T2 ROI slices: [7, 8, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24]\n", "Random T1 slicer index chosen: 8\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237328 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000237328/slicer_8_1.png\n", "Saving slicer 2 for patient 0000237328 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000237328/slicer_24_2.png\n", "Saving slicer 3 for patient 0000237328 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000237328/slicer_8_3.png\n", "Saving slicer 4 for patient 0000237328 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000237328/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000237328.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000343586/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000343586/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000343586/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000343586/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000343586/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000343586/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000343586/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000343586/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000343586 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000343586/slicer_20_1.png\n", "Saving slicer 2 for patient 0000343586 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000343586/slicer_20_2.png\n", "Saving slicer 3 for patient 0000343586 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000343586/slicer_20_3.png\n", "Saving slicer 4 for patient 0000343586 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000343586/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000343586.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000239925/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000239925/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000239925/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000239925/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239925/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239925/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239925/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239925/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 22, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 22, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000239925 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239925/slicer_16_1.png\n", "Saving slicer 2 for patient 0000239925 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239925/slicer_21_2.png\n", "Saving slicer 3 for patient 0000239925 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239925/slicer_16_3.png\n", "Saving slicer 4 for patient 0000239925 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239925/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000239925.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000289845/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000289845/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000289845/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000289845/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289845/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289845/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289845/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289845/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000289845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289845/slicer_26_1.png\n", "Saving slicer 2 for patient 0000289845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289845/slicer_26_2.png\n", "Saving slicer 3 for patient 0000289845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289845/slicer_26_3.png\n", "Saving slicer 4 for patient 0000289845 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289845/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000289845.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284089/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284089/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284089/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284089/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284089/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284089/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284089/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284089/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [2, 3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [4, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [4, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 8\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284089 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284089/slicer_8_1.png\n", "Saving slicer 2 for patient 0000284089 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284089/slicer_15_2.png\n", "Saving slicer 3 for patient 0000284089 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284089/slicer_8_3.png\n", "Saving slicer 4 for patient 0000284089 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284089/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000284089.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000247641/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000247641/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000247641/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000247641/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247641/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247641/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247641/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247641/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [17, 18, 21, 22, 23, 24]\n", "After T2 ROI slices: [17, 18, 21, 22, 23, 24]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000247641 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247641/slicer_15_1.png\n", "Saving slicer 2 for patient 0000247641 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247641/slicer_17_2.png\n", "Saving slicer 3 for patient 0000247641 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247641/slicer_15_3.png\n", "Saving slicer 4 for patient 0000247641 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247641/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000247641.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000260042/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000260042/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000260042/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000260042/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260042/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260042/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260042/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260042/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 17, 18, 19, 20, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [13, 14, 17, 18, 19, 20, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [18, 19, 25, 26, 27, 28]\n", "After T2 ROI slices: [18, 19, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000260042 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260042/slicer_18_1.png\n", "Saving slicer 2 for patient 0000260042 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260042/slicer_25_2.png\n", "Saving slicer 3 for patient 0000260042 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260042/slicer_18_3.png\n", "Saving slicer 4 for patient 0000260042 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260042/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000260042.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255885/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255885/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255885/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255885/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255885/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255885/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255885/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255885/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [16, 17, 18, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [15, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [15, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255885/slicer_18_1.png\n", "Saving slicer 2 for patient 0000255885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255885/slicer_28_2.png\n", "Saving slicer 3 for patient 0000255885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255885/slicer_18_3.png\n", "Saving slicer 4 for patient 0000255885 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255885/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000255885.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248028/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248028/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248028/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248028/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248028/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248028/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248028/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248028/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248028 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248028/slicer_15_1.png\n", "Saving slicer 2 for patient 0000248028 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248028/slicer_19_2.png\n", "Saving slicer 3 for patient 0000248028 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248028/slicer_15_3.png\n", "Saving slicer 4 for patient 0000248028 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248028/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000248028.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000252298/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000252298/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000252298/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000252298/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252298/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252298/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252298/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252298/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [7, 11, 12, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [7, 11, 12, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 10\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "Slice layer [10] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [14] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000252298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000252298/slicer_10_1.png\n", "Saving slicer 2 for patient 0000252298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000252298/slicer_14_2.png\n", "Saving slicer 3 for patient 0000252298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000252298/slicer_10_3.png\n", "Saving slicer 4 for patient 0000252298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000252298/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000252298.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284472/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284472/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284472/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284472/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284472/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284472/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284472/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284472/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284472 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284472/slicer_26_1.png\n", "Saving slicer 2 for patient 0000284472 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284472/slicer_23_2.png\n", "Saving slicer 3 for patient 0000284472 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284472/slicer_26_3.png\n", "Saving slicer 4 for patient 0000284472 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284472/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000284472.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268817/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268817/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268817/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268817/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268817/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268817/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268817/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268817/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 13, 14, 15, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [10, 11, 13, 14, 15, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [12, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [12, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000268817 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268817/slicer_27_1.png\n", "Saving slicer 2 for patient 0000268817 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268817/slicer_28_2.png\n", "Saving slicer 3 for patient 0000268817 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268817/slicer_27_3.png\n", "Saving slicer 4 for patient 0000268817 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268817/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000268817.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266728/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266728/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266728/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266728/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266728/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266728/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266728/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266728/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 24, 25, 26, 27]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 10\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "Slice layer [10] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [28] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266728 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266728/slicer_10_1.png\n", "Saving slicer 2 for patient 0000266728 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266728/slicer_28_2.png\n", "Saving slicer 3 for patient 0000266728 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266728/slicer_10_3.png\n", "Saving slicer 4 for patient 0000266728 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266728/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000266728.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280151/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280151/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280151/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280151/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280151/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280151/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280151/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280151/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280151/slicer_25_1.png\n", "Saving slicer 2 for patient 0000280151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280151/slicer_28_2.png\n", "Saving slicer 3 for patient 0000280151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280151/slicer_25_3.png\n", "Saving slicer 4 for patient 0000280151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280151/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000280151.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279354/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279354/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279354/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279354/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279354/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279354/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279354/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279354/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [19, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [19, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279354 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279354/slicer_27_1.png\n", "Saving slicer 2 for patient 0000279354 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279354/slicer_20_2.png\n", "Saving slicer 3 for patient 0000279354 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279354/slicer_27_3.png\n", "Saving slicer 4 for patient 0000279354 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279354/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000279354.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000242977/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000242977/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000242977/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000242977/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242977/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242977/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242977/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242977/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [1, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [1, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 6\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "Slice layer [6] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000242977 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000242977/slicer_6_1.png\n", "Saving slicer 2 for patient 0000242977 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000242977/slicer_27_2.png\n", "Saving slicer 3 for patient 0000242977 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000242977/slicer_6_3.png\n", "Saving slicer 4 for patient 0000242977 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000242977/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000242977.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298216/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298216/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298216/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298216/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298216/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298216/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298216/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298216/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [9, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 26, 27, 28]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 26, 27, 28]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "Slice layer [25] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298216 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298216/slicer_25_1.png\n", "Saving slicer 2 for patient 0000298216 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298216/slicer_28_2.png\n", "Saving slicer 3 for patient 0000298216 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298216/slicer_25_3.png\n", "Saving slicer 4 for patient 0000298216 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298216/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000298216.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000304176/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000304176/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000304176/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000304176/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304176/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304176/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304176/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304176/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [16, 17, 18, 19, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [16, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [16, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304176 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000304176/slicer_16_1.png\n", "Saving slicer 2 for patient 0000304176 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000304176/slicer_19_2.png\n", "Saving slicer 3 for patient 0000304176 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000304176/slicer_16_3.png\n", "Saving slicer 4 for patient 0000304176 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000304176/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000304176.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287627/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287627/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287627/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287627/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287627/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287627/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287627/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287627/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 20, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [15, 16, 17, 18, 20, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [22, 23, 24]\n", "After T2 ROI slices: [22, 23, 24]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287627 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287627/slicer_21_1.png\n", "Saving slicer 2 for patient 0000287627 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287627/slicer_17_2.png\n", "Saving slicer 3 for patient 0000287627 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287627/slicer_21_3.png\n", "Saving slicer 4 for patient 0000287627 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287627/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000287627.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248157/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248157/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248157/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248157/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248157/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248157/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248157/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248157/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [9, 10, 11, 12, 15, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [9, 10, 11, 12, 15, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248157/slicer_16_1.png\n", "Saving slicer 2 for patient 0000248157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248157/slicer_27_2.png\n", "Saving slicer 3 for patient 0000248157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248157/slicer_16_3.png\n", "Saving slicer 4 for patient 0000248157 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248157/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000248157.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300409/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300409/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300409/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300409/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300409/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300409/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300409/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300409/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [19, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [19, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000300409 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300409/slicer_20_1.png\n", "Saving slicer 2 for patient 0000300409 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300409/slicer_21_2.png\n", "Saving slicer 3 for patient 0000300409 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300409/slicer_20_3.png\n", "Saving slicer 4 for patient 0000300409 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300409/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000300409.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286569/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286569/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286569/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286569/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286569/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286569/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286569/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286569/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [8, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [8, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 4\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [4] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000286569 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286569/slicer_14_1.png\n", "Saving slicer 2 for patient 0000286569 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286569/slicer_4_2.png\n", "Saving slicer 3 for patient 0000286569 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286569/slicer_14_3.png\n", "Saving slicer 4 for patient 0000286569 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286569/slicer_4_4.png\n", "Successfully saved 4 slices for patient 0000286569.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249768/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249768/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249768/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249768/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249768/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249768/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249768/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249768/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 30\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249768 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249768/slicer_15_1.png\n", "Saving slicer 2 for patient 0000249768 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249768/slicer_30_2.png\n", "Saving slicer 3 for patient 0000249768 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249768/slicer_15_3.png\n", "Saving slicer 4 for patient 0000249768 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249768/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000249768.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245744/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245744/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245744/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245744/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245744/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245744/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245744/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245744/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245744 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245744/slicer_23_1.png\n", "Saving slicer 2 for patient 0000245744 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245744/slicer_29_2.png\n", "Saving slicer 3 for patient 0000245744 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245744/slicer_23_3.png\n", "Saving slicer 4 for patient 0000245744 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245744/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000245744.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245710/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245710/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245710/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245710/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245710/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245710/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245710/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245710/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245710 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245710/slicer_27_1.png\n", "Saving slicer 2 for patient 0000245710 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245710/slicer_22_2.png\n", "Saving slicer 3 for patient 0000245710 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245710/slicer_27_3.png\n", "Saving slicer 4 for patient 0000245710 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245710/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000245710.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286720/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286720/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286720/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286720/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286720/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286720/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286720/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286720/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [14, 15, 16, 17, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [14, 15, 16, 17, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000286720 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286720/slicer_19_1.png\n", "Saving slicer 2 for patient 0000286720 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286720/slicer_16_2.png\n", "Saving slicer 3 for patient 0000286720 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286720/slicer_19_3.png\n", "Saving slicer 4 for patient 0000286720 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286720/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000286720.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245738/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245738/mask_all.nii.gz\n", "Image shape: (34, 512, 512), Mask shape: (34, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245738/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245738/mask_all.nii.gz\n", "Image shape: (34, 512, 512), Mask shape: (34, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245738/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245738/mask_all.nii.gz\n", "Image shape: (34, 512, 512), Mask shape: (34, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245738/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245738/mask_all.nii.gz\n", "Image shape: (34, 512, 512), Mask shape: (34, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [16, 17, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [16, 17, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "Slice layer [14] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245738 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245738/slicer_14_1.png\n", "Saving slicer 2 for patient 0000245738 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245738/slicer_18_2.png\n", "Saving slicer 3 for patient 0000245738 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245738/slicer_14_3.png\n", "Saving slicer 4 for patient 0000245738 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245738/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000245738.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000294534/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000294534/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000294534/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000294534/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294534/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294534/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294534/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294534/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 13\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000294534 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294534/slicer_15_1.png\n", "Saving slicer 2 for patient 0000294534 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294534/slicer_13_2.png\n", "Saving slicer 3 for patient 0000294534 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294534/slicer_15_3.png\n", "Saving slicer 4 for patient 0000294534 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294534/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000294534.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302361/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302361/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302361/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302361/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302361/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302361/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302361/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302361/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [14, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [14, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302361 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302361/slicer_24_1.png\n", "Saving slicer 2 for patient 0000302361 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302361/slicer_14_2.png\n", "Saving slicer 3 for patient 0000302361 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302361/slicer_24_3.png\n", "Saving slicer 4 for patient 0000302361 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302361/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000302361.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287442/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287442/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287442/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287442/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287442/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287442/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287442/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287442/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [16, 17, 18, 19, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [17, 18, 19, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [17, 18, 19, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287442 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287442/slicer_24_1.png\n", "Saving slicer 2 for patient 0000287442 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287442/slicer_18_2.png\n", "Saving slicer 3 for patient 0000287442 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287442/slicer_24_3.png\n", "Saving slicer 4 for patient 0000287442 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287442/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000287442.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000278708/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000278708/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000278708/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000278708/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278708/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278708/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278708/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278708/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000278708 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278708/slicer_21_1.png\n", "Saving slicer 2 for patient 0000278708 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278708/slicer_24_2.png\n", "Saving slicer 3 for patient 0000278708 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278708/slicer_21_3.png\n", "Saving slicer 4 for patient 0000278708 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278708/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000278708.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000294377/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000294377/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000294377/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000294377/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294377/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294377/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294377/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294377/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 32\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000294377 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294377/slicer_32_1.png\n", "Saving slicer 2 for patient 0000294377 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294377/slicer_16_2.png\n", "Saving slicer 3 for patient 0000294377 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294377/slicer_32_3.png\n", "Saving slicer 4 for patient 0000294377 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294377/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000294377.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255262/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255262/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255262/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255262/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255262/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255262/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255262/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255262/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "After T1 ROI slices: [18, 19, 20, 21, 22, 23, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [18, 19, 20, 21, 22, 23, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [25] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255262 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255262/slicer_21_1.png\n", "Saving slicer 2 for patient 0000255262 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255262/slicer_25_2.png\n", "Saving slicer 3 for patient 0000255262 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255262/slicer_21_3.png\n", "Saving slicer 4 for patient 0000255262 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255262/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000255262.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1108274/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1108274/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1108274/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1108274/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1108274/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1108274/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1108274/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1108274/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [7, 8, 9, 10, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [7, 8, 9, 10, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 10\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1108274 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1108274/slicer_21_1.png\n", "Saving slicer 2 for patient 00C1108274 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1108274/slicer_10_2.png\n", "Saving slicer 3 for patient 00C1108274 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1108274/slicer_21_3.png\n", "Saving slicer 4 for patient 00C1108274 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1108274/slicer_10_4.png\n", "Successfully saved 4 slices for patient 00C1108274.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293176/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293176/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293176/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293176/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293176/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293176/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293176/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293176/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [6, 7, 9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 25, 26, 27, 28]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 7\n", "A total of 1 slices were extracted!\n", "Slice layer [24] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [7] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293176 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293176/slicer_24_1.png\n", "Saving slicer 2 for patient 0000293176 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293176/slicer_7_2.png\n", "Saving slicer 3 for patient 0000293176 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293176/slicer_24_3.png\n", "Saving slicer 4 for patient 0000293176 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293176/slicer_7_4.png\n", "Successfully saved 4 slices for patient 0000293176.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000275954/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000275954/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000275954/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000275954/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275954/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275954/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275954/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275954/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [15, 16, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [16, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [16, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275954 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000275954/slicer_30_1.png\n", "Saving slicer 2 for patient 0000275954 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000275954/slicer_22_2.png\n", "Saving slicer 3 for patient 0000275954 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000275954/slicer_30_3.png\n", "Saving slicer 4 for patient 0000275954 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000275954/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000275954.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298637/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298637/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298637/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298637/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298637/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298637/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298637/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298637/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298637/slicer_28_1.png\n", "Saving slicer 2 for patient 0000298637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298637/slicer_29_2.png\n", "Saving slicer 3 for patient 0000298637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298637/slicer_28_3.png\n", "Saving slicer 4 for patient 0000298637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298637/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000298637.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292328/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292328/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292328/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292328/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292328/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292328/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292328/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292328/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000292328 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292328/slicer_24_1.png\n", "Saving slicer 2 for patient 0000292328 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292328/slicer_26_2.png\n", "Saving slicer 3 for patient 0000292328 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292328/slicer_24_3.png\n", "Saving slicer 4 for patient 0000292328 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292328/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000292328.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000285534/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000285534/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000285534/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000285534/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285534/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285534/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285534/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285534/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [1, 2, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [1, 2, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 7\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000285534 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285534/slicer_7_1.png\n", "Saving slicer 2 for patient 0000285534 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285534/slicer_21_2.png\n", "Saving slicer 3 for patient 0000285534 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285534/slicer_7_3.png\n", "Saving slicer 4 for patient 0000285534 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285534/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000285534.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000288585/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000288585/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000288585/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000288585/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288585/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288585/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288585/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288585/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [9, 10, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [16, 18, 19, 20, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [16, 18, 19, 20, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000288585 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288585/slicer_17_1.png\n", "Saving slicer 2 for patient 0000288585 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288585/slicer_16_2.png\n", "Saving slicer 3 for patient 0000288585 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288585/slicer_17_3.png\n", "Saving slicer 4 for patient 0000288585 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288585/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000288585.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000299724/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000299724/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000299724/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000299724/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299724/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299724/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299724/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299724/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000299724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299724/slicer_25_1.png\n", "Saving slicer 2 for patient 0000299724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299724/slicer_24_2.png\n", "Saving slicer 3 for patient 0000299724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299724/slicer_25_3.png\n", "Saving slicer 4 for patient 0000299724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299724/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000299724.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000264447/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000264447/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000264447/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000264447/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264447/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264447/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264447/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264447/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [7, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [7, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000264447 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264447/slicer_28_1.png\n", "Saving slicer 2 for patient 0000264447 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264447/slicer_18_2.png\n", "Saving slicer 3 for patient 0000264447 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264447/slicer_28_3.png\n", "Saving slicer 4 for patient 0000264447 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264447/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000264447.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268447/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268447/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268447/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268447/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268447/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268447/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268447/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268447/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [12, 13, 19, 20, 21, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [12, 13, 19, 20, 21, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 32\n", "Random T2 slicer index chosen: 30\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000268447 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268447/slicer_32_1.png\n", "Saving slicer 2 for patient 0000268447 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268447/slicer_30_2.png\n", "Saving slicer 3 for patient 0000268447 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268447/slicer_32_3.png\n", "Saving slicer 4 for patient 0000268447 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268447/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000268447.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000236160/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000236160/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000236160/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000236160/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000236160/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000236160/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000236160/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000236160/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000236160 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000236160/slicer_27_1.png\n", "Saving slicer 2 for patient 0000236160 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000236160/slicer_21_2.png\n", "Saving slicer 3 for patient 0000236160 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000236160/slicer_27_3.png\n", "Saving slicer 4 for patient 0000236160 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000236160/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000236160.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000275897/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000275897/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000275897/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000275897/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275897/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275897/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275897/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275897/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [15, 16, 17, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [15, 16, 17, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 11\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "Slice layer [11] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275897 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000275897/slicer_11_1.png\n", "Saving slicer 2 for patient 0000275897 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000275897/slicer_21_2.png\n", "Saving slicer 3 for patient 0000275897 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000275897/slicer_11_3.png\n", "Saving slicer 4 for patient 0000275897 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000275897/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000275897.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000232635/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000232635/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000232635/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000232635/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000232635/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000232635/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000232635/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000232635/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [3, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [3, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 5\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "Slice layer [5] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000232635 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000232635/slicer_5_1.png\n", "Saving slicer 2 for patient 0000232635 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000232635/slicer_24_2.png\n", "Saving slicer 3 for patient 0000232635 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000232635/slicer_5_3.png\n", "Saving slicer 4 for patient 0000232635 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000232635/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000232635.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000242880/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000242880/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000242880/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000242880/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242880/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242880/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242880/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242880/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [7, 8, 9, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000242880 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000242880/slicer_19_1.png\n", "Saving slicer 2 for patient 0000242880 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000242880/slicer_24_2.png\n", "Saving slicer 3 for patient 0000242880 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000242880/slicer_19_3.png\n", "Saving slicer 4 for patient 0000242880 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000242880/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000242880.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000291591/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000291591/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000291591/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000291591/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291591/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291591/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291591/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291591/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [18, 19, 20, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [18, 19, 20, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 10\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [10] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000291591 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291591/slicer_19_1.png\n", "Saving slicer 2 for patient 0000291591 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291591/slicer_10_2.png\n", "Saving slicer 3 for patient 0000291591 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291591/slicer_19_3.png\n", "Saving slicer 4 for patient 0000291591 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291591/slicer_10_4.png\n", "Successfully saved 4 slices for patient 0000291591.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000285921/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000285921/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000285921/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000285921/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285921/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285921/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285921/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285921/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [1, 2, 3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [1, 2, 3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [3, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [3, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 12\n", "Random T2 slicer index chosen: 12\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000285921 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285921/slicer_12_1.png\n", "Saving slicer 2 for patient 0000285921 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285921/slicer_12_2.png\n", "Saving slicer 3 for patient 0000285921 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285921/slicer_12_3.png\n", "Saving slicer 4 for patient 0000285921 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285921/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000285921.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000252786/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000252786/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000252786/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000252786/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252786/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252786/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252786/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252786/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "Slice layer [30] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000252786 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000252786/slicer_30_1.png\n", "Saving slicer 2 for patient 0000252786 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000252786/slicer_23_2.png\n", "Saving slicer 3 for patient 0000252786 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000252786/slicer_30_3.png\n", "Saving slicer 4 for patient 0000252786 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000252786/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000252786.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1129879/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1129879/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1129879/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1129879/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1129879/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1129879/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1129879/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1129879/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 11, 12, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [7, 11, 12, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [19, 20, 25, 26, 27, 28]\n", "After T2 ROI slices: [19, 20, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 11\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "Slice layer [11] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1129879 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1129879/slicer_11_1.png\n", "Saving slicer 2 for patient 00C1129879 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1129879/slicer_16_2.png\n", "Saving slicer 3 for patient 00C1129879 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1129879/slicer_11_3.png\n", "Saving slicer 4 for patient 00C1129879 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1129879/slicer_16_4.png\n", "Successfully saved 4 slices for patient 00C1129879.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000271547/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000271547/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000271547/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000271547/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271547/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271547/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271547/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271547/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 32\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000271547 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271547/slicer_27_1.png\n", "Saving slicer 2 for patient 0000271547 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271547/slicer_32_2.png\n", "Saving slicer 3 for patient 0000271547 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271547/slicer_27_3.png\n", "Saving slicer 4 for patient 0000271547 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271547/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000271547.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000277846/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000277846/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000277846/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000277846/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277846/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277846/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277846/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277846/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000277846 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000277846/slicer_28_1.png\n", "Saving slicer 2 for patient 0000277846 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000277846/slicer_27_2.png\n", "Saving slicer 3 for patient 0000277846 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000277846/slicer_28_3.png\n", "Saving slicer 4 for patient 0000277846 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000277846/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000277846.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000250336/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000250336/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000250336/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000250336/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250336/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250336/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250336/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250336/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 19, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [17, 18, 19, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [17, 18, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [17, 18, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 31\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "Slice layer [31] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000250336 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000250336/slicer_31_1.png\n", "Saving slicer 2 for patient 0000250336 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000250336/slicer_25_2.png\n", "Saving slicer 3 for patient 0000250336 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000250336/slicer_31_3.png\n", "Saving slicer 4 for patient 0000250336 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000250336/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000250336.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000278637/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000278637/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000278637/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000278637/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278637/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278637/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278637/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278637/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 24, 25, 26, 27]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000278637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278637/slicer_20_1.png\n", "Saving slicer 2 for patient 0000278637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278637/slicer_24_2.png\n", "Saving slicer 3 for patient 0000278637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278637/slicer_20_3.png\n", "Saving slicer 4 for patient 0000278637 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278637/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000278637.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254723/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254723/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254723/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254723/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254723/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254723/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254723/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254723/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [21, 22, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [21, 22, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [15, 16, 17, 18, 27, 28, 29]\n", "After T2 ROI slices: [15, 16, 17, 18, 27, 28, 29]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000254723 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254723/slicer_27_1.png\n", "Saving slicer 2 for patient 0000254723 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254723/slicer_27_2.png\n", "Saving slicer 3 for patient 0000254723 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254723/slicer_27_3.png\n", "Saving slicer 4 for patient 0000254723 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254723/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000254723.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000276967/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000276967/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000276967/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000276967/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276967/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276967/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276967/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276967/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [17, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [17, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 31\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [31] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000276967 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276967/slicer_26_1.png\n", "Saving slicer 2 for patient 0000276967 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276967/slicer_31_2.png\n", "Saving slicer 3 for patient 0000276967 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276967/slicer_26_3.png\n", "Saving slicer 4 for patient 0000276967 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276967/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000276967.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000307316/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000307316/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000307316/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000307316/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307316/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307316/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307316/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307316/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [6, 7, 8, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [20, 21, 24, 25, 26]\n", "After T2 ROI slices: [20, 21, 24, 25, 26]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [14] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000307316 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307316/slicer_16_1.png\n", "Saving slicer 2 for patient 0000307316 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307316/slicer_14_2.png\n", "Saving slicer 3 for patient 0000307316 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307316/slicer_16_3.png\n", "Saving slicer 4 for patient 0000307316 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307316/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000307316.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287587/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287587/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287587/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287587/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287587/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287587/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287587/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287587/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287587 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287587/slicer_26_1.png\n", "Saving slicer 2 for patient 0000287587 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287587/slicer_24_2.png\n", "Saving slicer 3 for patient 0000287587 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287587/slicer_26_3.png\n", "Saving slicer 4 for patient 0000287587 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287587/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000287587.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297875/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297875/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297875/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297875/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297875/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297875/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297875/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297875/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297875 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297875/slicer_28_1.png\n", "Saving slicer 2 for patient 0000297875 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297875/slicer_29_2.png\n", "Saving slicer 3 for patient 0000297875 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297875/slicer_28_3.png\n", "Saving slicer 4 for patient 0000297875 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297875/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000297875.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000262092/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000262092/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000262092/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000262092/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262092/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262092/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262092/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262092/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [12, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000262092 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262092/slicer_24_1.png\n", "Saving slicer 2 for patient 0000262092 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262092/slicer_27_2.png\n", "Saving slicer 3 for patient 0000262092 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262092/slicer_24_3.png\n", "Saving slicer 4 for patient 0000262092 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262092/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000262092.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000262128/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000262128/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000262128/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000262128/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262128/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262128/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262128/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262128/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 12\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [12] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000262128 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262128/slicer_28_1.png\n", "Saving slicer 2 for patient 0000262128 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262128/slicer_12_2.png\n", "Saving slicer 3 for patient 0000262128 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262128/slicer_28_3.png\n", "Saving slicer 4 for patient 0000262128 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262128/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000262128.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266347/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266347/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266347/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266347/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266347/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266347/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266347/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266347/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [7, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266347 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266347/slicer_29_1.png\n", "Saving slicer 2 for patient 0000266347 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266347/slicer_27_2.png\n", "Saving slicer 3 for patient 0000266347 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266347/slicer_29_3.png\n", "Saving slicer 4 for patient 0000266347 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266347/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000266347.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000313737/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000313737/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000313737/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000313737/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000313737/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000313737/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000313737/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000313737/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 13\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000313737 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000313737/slicer_17_1.png\n", "Saving slicer 2 for patient 0000313737 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000313737/slicer_13_2.png\n", "Saving slicer 3 for patient 0000313737 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000313737/slicer_17_3.png\n", "Saving slicer 4 for patient 0000313737 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000313737/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000313737.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274268/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274268/mask_all.nii.gz\n", "Image shape: (36, 448, 448), Mask shape: (36, 448, 448)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274268/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274268/mask_all.nii.gz\n", "Image shape: (36, 448, 448), Mask shape: (36, 448, 448)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274268/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274268/mask_all.nii.gz\n", "Image shape: (36, 448, 448), Mask shape: (36, 448, 448)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274268/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274268/mask_all.nii.gz\n", "Image shape: (36, 448, 448), Mask shape: (36, 448, 448)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [9, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [17, 18, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [17, 18, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 9\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [9] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274268 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274268/slicer_20_1.png\n", "Saving slicer 2 for patient 0000274268 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274268/slicer_9_2.png\n", "Saving slicer 3 for patient 0000274268 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274268/slicer_20_3.png\n", "Saving slicer 4 for patient 0000274268 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274268/slicer_9_4.png\n", "Successfully saved 4 slices for patient 0000274268.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000252252/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000252252/mask_all.nii.gz\n", "Image shape: (40, 400, 400), Mask shape: (40, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000252252/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000252252/mask_all.nii.gz\n", "Image shape: (40, 400, 400), Mask shape: (40, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252252/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252252/mask_all.nii.gz\n", "Image shape: (40, 400, 400), Mask shape: (40, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252252/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252252/mask_all.nii.gz\n", "Image shape: (40, 400, 400), Mask shape: (40, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000252252 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000252252/slicer_17_1.png\n", "Saving slicer 2 for patient 0000252252 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000252252/slicer_25_2.png\n", "Saving slicer 3 for patient 0000252252 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000252252/slicer_17_3.png\n", "Saving slicer 4 for patient 0000252252 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000252252/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000252252.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255603/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255603/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255603/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255603/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255603/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255603/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255603/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255603/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 30\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [30] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255603 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255603/slicer_18_1.png\n", "Saving slicer 2 for patient 0000255603 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255603/slicer_30_2.png\n", "Saving slicer 3 for patient 0000255603 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255603/slicer_18_3.png\n", "Saving slicer 4 for patient 0000255603 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255603/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000255603.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283104/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283104/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283104/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283104/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283104/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283104/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283104/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283104/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 22, 23, 24]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 22, 23, 24]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 13\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283104 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283104/slicer_15_1.png\n", "Saving slicer 2 for patient 0000283104 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283104/slicer_13_2.png\n", "Saving slicer 3 for patient 0000283104 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283104/slicer_15_3.png\n", "Saving slicer 4 for patient 0000283104 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283104/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000283104.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000294080/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000294080/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000294080/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000294080/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294080/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294080/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294080/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294080/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 10\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "Slice layer [10] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000294080 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294080/slicer_10_1.png\n", "Saving slicer 2 for patient 0000294080 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294080/slicer_23_2.png\n", "Saving slicer 3 for patient 0000294080 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294080/slicer_10_3.png\n", "Saving slicer 4 for patient 0000294080 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294080/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000294080.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000301413/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000301413/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000301413/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000301413/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301413/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301413/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301413/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301413/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 12\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000301413 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301413/slicer_21_1.png\n", "Saving slicer 2 for patient 0000301413 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301413/slicer_12_2.png\n", "Saving slicer 3 for patient 0000301413 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301413/slicer_21_3.png\n", "Saving slicer 4 for patient 0000301413 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301413/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000301413.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000296805/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000296805/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000296805/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000296805/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296805/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296805/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296805/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296805/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000296805 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296805/slicer_13_1.png\n", "Saving slicer 2 for patient 0000296805 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296805/slicer_26_2.png\n", "Saving slicer 3 for patient 0000296805 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296805/slicer_13_3.png\n", "Saving slicer 4 for patient 0000296805 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296805/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000296805.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283008/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283008/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283008/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283008/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283008/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283008/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283008/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283008/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 11, 12, 14, 15, 17, 18, 19, 20, 21, 22, 23, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36]\n", "Before T2 ROI slices: [9, 11, 12, 14, 15, 17, 18, 19, 20, 21, 22, 23, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36]\n", "After T1 ROI slices: [29, 30, 31, 32, 33]\n", "After T2 ROI slices: [29, 30, 31, 32, 33]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [23] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283008 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283008/slicer_15_1.png\n", "Saving slicer 2 for patient 0000283008 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283008/slicer_23_2.png\n", "Saving slicer 3 for patient 0000283008 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283008/slicer_15_3.png\n", "Saving slicer 4 for patient 0000283008 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283008/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000283008.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280624/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280624/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280624/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280624/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280624/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280624/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280624/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280624/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280624 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280624/slicer_15_1.png\n", "Saving slicer 2 for patient 0000280624 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280624/slicer_22_2.png\n", "Saving slicer 3 for patient 0000280624 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280624/slicer_15_3.png\n", "Saving slicer 4 for patient 0000280624 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280624/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000280624.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000247244/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000247244/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000247244/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000247244/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247244/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247244/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247244/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247244/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 31\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000247244 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247244/slicer_24_1.png\n", "Saving slicer 2 for patient 0000247244 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247244/slicer_31_2.png\n", "Saving slicer 3 for patient 0000247244 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247244/slicer_24_3.png\n", "Saving slicer 4 for patient 0000247244 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247244/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000247244.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282323/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282323/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282323/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282323/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282323/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282323/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282323/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282323/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 12, 13, 14, 15, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [6, 12, 13, 14, 15, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [25, 26, 27, 28, 29]\n", "After T2 ROI slices: [25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 6\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [6] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282323/slicer_25_1.png\n", "Saving slicer 2 for patient 0000282323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282323/slicer_6_2.png\n", "Saving slicer 3 for patient 0000282323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282323/slicer_25_3.png\n", "Saving slicer 4 for patient 0000282323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282323/slicer_6_4.png\n", "Successfully saved 4 slices for patient 0000282323.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281613/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281613/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281613/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281613/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281613/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281613/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281613/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281613/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [14, 15, 16, 17, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [14, 15, 16, 17, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 13\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000281613 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281613/slicer_26_1.png\n", "Saving slicer 2 for patient 0000281613 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281613/slicer_13_2.png\n", "Saving slicer 3 for patient 0000281613 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281613/slicer_26_3.png\n", "Saving slicer 4 for patient 0000281613 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281613/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000281613.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000277174/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000277174/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000277174/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000277174/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277174/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277174/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277174/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277174/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000277174 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000277174/slicer_29_1.png\n", "Saving slicer 2 for patient 0000277174 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000277174/slicer_20_2.png\n", "Saving slicer 3 for patient 0000277174 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000277174/slicer_29_3.png\n", "Saving slicer 4 for patient 0000277174 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000277174/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000277174.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000312028/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000312028/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000312028/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000312028/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312028/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312028/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312028/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312028/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 26, 27, 28, 29]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000312028 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312028/slicer_22_1.png\n", "Saving slicer 2 for patient 0000312028 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312028/slicer_14_2.png\n", "Saving slicer 3 for patient 0000312028 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312028/slicer_22_3.png\n", "Saving slicer 4 for patient 0000312028 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312028/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000312028.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000239470/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000239470/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000239470/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000239470/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239470/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239470/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239470/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239470/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 21, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 21, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000239470 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239470/slicer_15_1.png\n", "Saving slicer 2 for patient 0000239470 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239470/slicer_25_2.png\n", "Saving slicer 3 for patient 0000239470 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239470/slicer_15_3.png\n", "Saving slicer 4 for patient 0000239470 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239470/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000239470.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000276422/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000276422/mask_all.nii.gz\n", "Image shape: (36, 432, 432), Mask shape: (36, 432, 432)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000276422/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000276422/mask_all.nii.gz\n", "Image shape: (36, 432, 432), Mask shape: (36, 432, 432)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276422/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276422/mask_all.nii.gz\n", "Image shape: (36, 432, 432), Mask shape: (36, 432, 432)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276422/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276422/mask_all.nii.gz\n", "Image shape: (36, 432, 432), Mask shape: (36, 432, 432)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 2\n", "Random T2 slicer index chosen: 4\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000276422 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276422/slicer_2_1.png\n", "Saving slicer 2 for patient 0000276422 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276422/slicer_4_2.png\n", "Saving slicer 3 for patient 0000276422 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276422/slicer_2_3.png\n", "Saving slicer 4 for patient 0000276422 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276422/slicer_4_4.png\n", "Successfully saved 4 slices for patient 0000276422.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293048/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293048/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293048/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293048/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293048/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293048/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293048/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293048/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 10\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "Slice layer [10] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293048 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293048/slicer_10_1.png\n", "Saving slicer 2 for patient 0000293048 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293048/slicer_14_2.png\n", "Saving slicer 3 for patient 0000293048 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293048/slicer_10_3.png\n", "Saving slicer 4 for patient 0000293048 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293048/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000293048.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000229732/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000229732/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000229732/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000229732/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000229732/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000229732/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000229732/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000229732/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [5, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000229732 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000229732/slicer_24_1.png\n", "Saving slicer 2 for patient 0000229732 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000229732/slicer_25_2.png\n", "Saving slicer 3 for patient 0000229732 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000229732/slicer_24_3.png\n", "Saving slicer 4 for patient 0000229732 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000229732/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000229732.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293253/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293253/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293253/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293253/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293253/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293253/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293253/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293253/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 6\n", "Random T2 slicer index chosen: 2\n", "A total of 1 slices were extracted!\n", "Slice layer [6] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [2] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293253 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293253/slicer_6_1.png\n", "Saving slicer 2 for patient 0000293253 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293253/slicer_2_2.png\n", "Saving slicer 3 for patient 0000293253 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293253/slicer_6_3.png\n", "Saving slicer 4 for patient 0000293253 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293253/slicer_2_4.png\n", "Successfully saved 4 slices for patient 0000293253.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268361/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268361/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268361/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268361/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268361/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268361/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268361/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268361/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [18, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "After T2 ROI slices: [18, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000268361 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268361/slicer_23_1.png\n", "Saving slicer 2 for patient 0000268361 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268361/slicer_23_2.png\n", "Saving slicer 3 for patient 0000268361 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268361/slicer_23_3.png\n", "Saving slicer 4 for patient 0000268361 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268361/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000268361.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000276401/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000276401/mask_all.nii.gz\n", "Image shape: (36, 480, 480), Mask shape: (36, 480, 480)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000276401/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000276401/mask_all.nii.gz\n", "Image shape: (36, 480, 480), Mask shape: (36, 480, 480)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276401/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276401/mask_all.nii.gz\n", "Image shape: (36, 480, 480), Mask shape: (36, 480, 480)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276401/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276401/mask_all.nii.gz\n", "Image shape: (36, 480, 480), Mask shape: (36, 480, 480)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 11\n", "Random T2 slicer index chosen: 32\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000276401 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276401/slicer_11_1.png\n", "Saving slicer 2 for patient 0000276401 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276401/slicer_32_2.png\n", "Saving slicer 3 for patient 0000276401 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276401/slicer_11_3.png\n", "Saving slicer 4 for patient 0000276401 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276401/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000276401.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298323/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298323/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298323/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298323/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298323/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298323/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298323/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298323/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298323/slicer_17_1.png\n", "Saving slicer 2 for patient 0000298323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298323/slicer_29_2.png\n", "Saving slicer 3 for patient 0000298323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298323/slicer_17_3.png\n", "Saving slicer 4 for patient 0000298323 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298323/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000298323.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000289813/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000289813/mask_all.nii.gz\n", "Image shape: (36, 336, 336), Mask shape: (36, 336, 336)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000289813/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000289813/mask_all.nii.gz\n", "Image shape: (36, 336, 336), Mask shape: (36, 336, 336)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289813/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289813/mask_all.nii.gz\n", "Image shape: (36, 336, 336), Mask shape: (36, 336, 336)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289813/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289813/mask_all.nii.gz\n", "Image shape: (36, 336, 336), Mask shape: (36, 336, 336)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [13, 16, 17, 18, 19, 20, 21, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [13, 16, 17, 18, 19, 20, 21, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000289813 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289813/slicer_22_1.png\n", "Saving slicer 2 for patient 0000289813 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289813/slicer_16_2.png\n", "Saving slicer 3 for patient 0000289813 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289813/slicer_22_3.png\n", "Saving slicer 4 for patient 0000289813 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289813/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000289813.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000291457/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000291457/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000291457/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000291457/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291457/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291457/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291457/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291457/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [8, 12, 17, 18, 19, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [8, 12, 17, 18, 19, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 10\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "Slice layer [10] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000291457 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291457/slicer_10_1.png\n", "Saving slicer 2 for patient 0000291457 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291457/slicer_15_2.png\n", "Saving slicer 3 for patient 0000291457 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291457/slicer_10_3.png\n", "Saving slicer 4 for patient 0000291457 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291457/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000291457.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281499/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281499/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281499/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281499/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281499/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281499/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281499/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281499/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [9, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [9, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 12\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [12] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000281499 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281499/slicer_18_1.png\n", "Saving slicer 2 for patient 0000281499 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281499/slicer_12_2.png\n", "Saving slicer 3 for patient 0000281499 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281499/slicer_18_3.png\n", "Saving slicer 4 for patient 0000281499 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281499/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000281499.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000251017/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000251017/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000251017/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000251017/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251017/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251017/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251017/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251017/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [2, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [2, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 1\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "Slice layer [1] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000251017 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000251017/slicer_1_1.png\n", "Saving slicer 2 for patient 0000251017 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000251017/slicer_22_2.png\n", "Saving slicer 3 for patient 0000251017 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000251017/slicer_1_3.png\n", "Saving slicer 4 for patient 0000251017 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000251017/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000251017.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280582/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280582/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280582/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280582/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280582/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280582/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280582/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280582/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [23, 24, 25, 26, 27]\n", "After T2 ROI slices: [23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280582 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280582/slicer_15_1.png\n", "Saving slicer 2 for patient 0000280582 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280582/slicer_21_2.png\n", "Saving slicer 3 for patient 0000280582 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280582/slicer_15_3.png\n", "Saving slicer 4 for patient 0000280582 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280582/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000280582.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263372/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263372/mask_all.nii.gz\n", "Image shape: (36, 432, 432), Mask shape: (36, 432, 432)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263372/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263372/mask_all.nii.gz\n", "Image shape: (36, 432, 432), Mask shape: (36, 432, 432)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263372/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263372/mask_all.nii.gz\n", "Image shape: (36, 432, 432), Mask shape: (36, 432, 432)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263372/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263372/mask_all.nii.gz\n", "Image shape: (36, 432, 432), Mask shape: (36, 432, 432)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [13, 14, 15, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [24, 25, 26, 27, 28]\n", "After T2 ROI slices: [24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000263372 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263372/slicer_15_1.png\n", "Saving slicer 2 for patient 0000263372 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263372/slicer_15_2.png\n", "Saving slicer 3 for patient 0000263372 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263372/slicer_15_3.png\n", "Saving slicer 4 for patient 0000263372 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263372/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000263372.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000291169/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000291169/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000291169/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000291169/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291169/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291169/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291169/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291169/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "Before T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "After T1 ROI slices: [18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T2 ROI slices: [18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Random T1 slicer index chosen: 32\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000291169 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291169/slicer_32_1.png\n", "Saving slicer 2 for patient 0000291169 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291169/slicer_21_2.png\n", "Saving slicer 3 for patient 0000291169 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291169/slicer_32_3.png\n", "Saving slicer 4 for patient 0000291169 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291169/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000291169.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000277655/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000277655/mask_all.nii.gz\n", "Image shape: (38, 384, 384), Mask shape: (38, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000277655/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000277655/mask_all.nii.gz\n", "Image shape: (38, 384, 384), Mask shape: (38, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277655/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277655/mask_all.nii.gz\n", "Image shape: (38, 384, 384), Mask shape: (38, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277655/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277655/mask_all.nii.gz\n", "Image shape: (38, 384, 384), Mask shape: (38, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 3\n", "Random T2 slicer index chosen: 3\n", "A total of 1 slices were extracted!\n", "Slice layer [3] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [3] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000277655 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000277655/slicer_3_1.png\n", "Saving slicer 2 for patient 0000277655 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000277655/slicer_3_2.png\n", "Saving slicer 3 for patient 0000277655 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000277655/slicer_3_3.png\n", "Saving slicer 4 for patient 0000277655 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000277655/slicer_3_4.png\n", "Successfully saved 4 slices for patient 0000277655.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000275986/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000275986/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000275986/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000275986/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275986/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275986/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275986/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275986/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [10, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [10, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 9\n", "Random T2 slicer index chosen: 13\n", "A total of 1 slices were extracted!\n", "Slice layer [9] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275986 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000275986/slicer_9_1.png\n", "Saving slicer 2 for patient 0000275986 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000275986/slicer_13_2.png\n", "Saving slicer 3 for patient 0000275986 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000275986/slicer_9_3.png\n", "Saving slicer 4 for patient 0000275986 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000275986/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000275986.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000289453/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000289453/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000289453/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000289453/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289453/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289453/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289453/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289453/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 35]\n", "Before T2 ROI slices: [15, 16, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 35]\n", "After T1 ROI slices: [23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 30\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000289453 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289453/slicer_29_1.png\n", "Saving slicer 2 for patient 0000289453 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289453/slicer_30_2.png\n", "Saving slicer 3 for patient 0000289453 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289453/slicer_29_3.png\n", "Saving slicer 4 for patient 0000289453 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289453/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000289453.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268659/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268659/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268659/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268659/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268659/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268659/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268659/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268659/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "Slice layer [23] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000268659 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268659/slicer_23_1.png\n", "Saving slicer 2 for patient 0000268659 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268659/slicer_27_2.png\n", "Saving slicer 3 for patient 0000268659 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268659/slicer_23_3.png\n", "Saving slicer 4 for patient 0000268659 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268659/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000268659.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286826/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286826/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286826/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286826/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286826/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286826/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286826/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286826/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [22, 23, 24, 25, 26, 29, 30, 31, 32, 33, 34]\n", "After T2 ROI slices: [22, 23, 24, 25, 26, 29, 30, 31, 32, 33, 34]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000286826 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286826/slicer_30_1.png\n", "Saving slicer 2 for patient 0000286826 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286826/slicer_29_2.png\n", "Saving slicer 3 for patient 0000286826 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286826/slicer_30_3.png\n", "Saving slicer 4 for patient 0000286826 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286826/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000286826.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249913/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249913/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249913/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249913/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249913/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249913/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249913/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249913/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249913 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249913/slicer_20_1.png\n", "Saving slicer 2 for patient 0000249913 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249913/slicer_20_2.png\n", "Saving slicer 3 for patient 0000249913 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249913/slicer_20_3.png\n", "Saving slicer 4 for patient 0000249913 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249913/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000249913.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290471/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290471/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290471/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290471/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290471/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290471/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290471/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290471/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [17, 18, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [17, 18, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 13\n", "A total of 1 slices were extracted!\n", "Slice layer [26] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000290471 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290471/slicer_26_1.png\n", "Saving slicer 2 for patient 0000290471 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290471/slicer_13_2.png\n", "Saving slicer 3 for patient 0000290471 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290471/slicer_26_3.png\n", "Saving slicer 4 for patient 0000290471 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290471/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000290471.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297181/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297181/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297181/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297181/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297181/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297181/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297181/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297181/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [4, 5, 6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [10, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [10, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 6\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "Slice layer [6] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297181 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297181/slicer_6_1.png\n", "Saving slicer 2 for patient 0000297181 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297181/slicer_22_2.png\n", "Saving slicer 3 for patient 0000297181 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297181/slicer_6_3.png\n", "Saving slicer 4 for patient 0000297181 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297181/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000297181.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000246392/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000246392/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000246392/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000246392/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246392/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246392/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246392/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246392/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "Slice layer [30] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000246392 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246392/slicer_30_1.png\n", "Saving slicer 2 for patient 0000246392 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246392/slicer_14_2.png\n", "Saving slicer 3 for patient 0000246392 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246392/slicer_30_3.png\n", "Saving slicer 4 for patient 0000246392 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246392/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000246392.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257142/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257142/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257142/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257142/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257142/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257142/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257142/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257142/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [6, 7, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [18, 25, 26, 27, 28]\n", "After T2 ROI slices: [18, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 32\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [24] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000257142 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257142/slicer_32_1.png\n", "Saving slicer 2 for patient 0000257142 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257142/slicer_24_2.png\n", "Saving slicer 3 for patient 0000257142 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257142/slicer_32_3.png\n", "Saving slicer 4 for patient 0000257142 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257142/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000257142.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000240130/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000240130/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000240130/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000240130/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240130/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240130/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240130/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240130/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [19, 20, 21, 22, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [19, 20, 21, 22, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000240130 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240130/slicer_29_1.png\n", "Saving slicer 2 for patient 0000240130 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240130/slicer_21_2.png\n", "Saving slicer 3 for patient 0000240130 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240130/slicer_29_3.png\n", "Saving slicer 4 for patient 0000240130 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240130/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000240130.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255304/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255304/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255304/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255304/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255304/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255304/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255304/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255304/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 12\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [12] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255304 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255304/slicer_19_1.png\n", "Saving slicer 2 for patient 0000255304 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255304/slicer_12_2.png\n", "Saving slicer 3 for patient 0000255304 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255304/slicer_19_3.png\n", "Saving slicer 4 for patient 0000255304 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255304/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000255304.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254647/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254647/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254647/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254647/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254647/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254647/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254647/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254647/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 5, 6, 7, 8, 9, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [3, 4, 5, 6, 7, 8, 9, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 8\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [8] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000254647 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254647/slicer_24_1.png\n", "Saving slicer 2 for patient 0000254647 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254647/slicer_8_2.png\n", "Saving slicer 3 for patient 0000254647 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254647/slicer_24_3.png\n", "Saving slicer 4 for patient 0000254647 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254647/slicer_8_4.png\n", "Successfully saved 4 slices for patient 0000254647.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254937/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254937/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254937/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254937/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254937/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254937/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254937/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254937/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [11, 13, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [11, 13, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 12\n", "Random T2 slicer index chosen: 11\n", "A total of 1 slices were extracted!\n", "Slice layer [12] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000254937 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254937/slicer_12_1.png\n", "Saving slicer 2 for patient 0000254937 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254937/slicer_11_2.png\n", "Saving slicer 3 for patient 0000254937 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254937/slicer_12_3.png\n", "Saving slicer 4 for patient 0000254937 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254937/slicer_11_4.png\n", "Successfully saved 4 slices for patient 0000254937.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000265846/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000265846/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000265846/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000265846/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265846/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265846/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265846/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265846/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [13, 14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [14, 15, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [14, 15, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265846 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000265846/slicer_16_1.png\n", "Saving slicer 2 for patient 0000265846 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000265846/slicer_29_2.png\n", "Saving slicer 3 for patient 0000265846 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000265846/slicer_16_3.png\n", "Saving slicer 4 for patient 0000265846 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000265846/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000265846.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283326/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283326/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283326/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283326/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283326/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283326/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283326/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283326/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [8, 11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283326 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283326/slicer_17_1.png\n", "Saving slicer 2 for patient 0000283326 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283326/slicer_24_2.png\n", "Saving slicer 3 for patient 0000283326 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283326/slicer_17_3.png\n", "Saving slicer 4 for patient 0000283326 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283326/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000283326.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1138525/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1138525/mask_all.nii.gz\n", "Image shape: (44, 512, 512), Mask shape: (44, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1138525/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1138525/mask_all.nii.gz\n", "Image shape: (44, 512, 512), Mask shape: (44, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1138525/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1138525/mask_all.nii.gz\n", "Image shape: (44, 512, 512), Mask shape: (44, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1138525/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1138525/mask_all.nii.gz\n", "Image shape: (44, 512, 512), Mask shape: (44, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1138525 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1138525/slicer_30_1.png\n", "Saving slicer 2 for patient 00C1138525 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1138525/slicer_24_2.png\n", "Saving slicer 3 for patient 00C1138525 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1138525/slicer_30_3.png\n", "Saving slicer 4 for patient 00C1138525 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1138525/slicer_24_4.png\n", "Successfully saved 4 slices for patient 00C1138525.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000307689/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000307689/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000307689/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000307689/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307689/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307689/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307689/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307689/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [13, 14, 15, 16, 23, 24, 25, 26]\n", "After T2 ROI slices: [13, 14, 15, 16, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000307689 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307689/slicer_14_1.png\n", "Saving slicer 2 for patient 0000307689 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307689/slicer_18_2.png\n", "Saving slicer 3 for patient 0000307689 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307689/slicer_14_3.png\n", "Saving slicer 4 for patient 0000307689 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307689/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000307689.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000233995/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000233995/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000233995/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000233995/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000233995/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000233995/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000233995/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000233995/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [6, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [7, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [7, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000233995 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000233995/slicer_15_1.png\n", "Saving slicer 2 for patient 0000233995 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000233995/slicer_16_2.png\n", "Saving slicer 3 for patient 0000233995 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000233995/slicer_15_3.png\n", "Saving slicer 4 for patient 0000233995 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000233995/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000233995.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290488/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290488/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290488/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290488/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290488/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290488/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290488/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290488/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [9, 10, 11, 12, 13, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [9, 10, 11, 12, 13, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 8\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "Slice layer [8] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000290488 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290488/slicer_8_1.png\n", "Saving slicer 2 for patient 0000290488 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290488/slicer_15_2.png\n", "Saving slicer 3 for patient 0000290488 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290488/slicer_8_3.png\n", "Saving slicer 4 for patient 0000290488 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290488/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000290488.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000296931/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000296931/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000296931/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000296931/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296931/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296931/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296931/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296931/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000296931 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296931/slicer_13_1.png\n", "Saving slicer 2 for patient 0000296931 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296931/slicer_16_2.png\n", "Saving slicer 3 for patient 0000296931 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296931/slicer_13_3.png\n", "Saving slicer 4 for patient 0000296931 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296931/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000296931.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000288113/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000288113/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000288113/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000288113/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288113/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288113/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288113/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288113/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [17, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [17, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000288113 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288113/slicer_30_1.png\n", "Saving slicer 2 for patient 0000288113 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288113/slicer_16_2.png\n", "Saving slicer 3 for patient 0000288113 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288113/slicer_30_3.png\n", "Saving slicer 4 for patient 0000288113 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288113/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000288113.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000310070/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000310070/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000310070/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000310070/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310070/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310070/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310070/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310070/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000310070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310070/slicer_18_1.png\n", "Saving slicer 2 for patient 0000310070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310070/slicer_22_2.png\n", "Saving slicer 3 for patient 0000310070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310070/slicer_18_3.png\n", "Saving slicer 4 for patient 0000310070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310070/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000310070.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000260229/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000260229/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000260229/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000260229/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260229/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260229/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260229/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260229/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 15, 16, 18, 19, 20, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [12, 13, 15, 16, 18, 19, 20, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [20, 27, 28, 29, 30]\n", "After T2 ROI slices: [20, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000260229 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260229/slicer_30_1.png\n", "Saving slicer 2 for patient 0000260229 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260229/slicer_28_2.png\n", "Saving slicer 3 for patient 0000260229 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260229/slicer_30_3.png\n", "Saving slicer 4 for patient 0000260229 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260229/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000260229.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000250537/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000250537/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000250537/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000250537/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250537/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250537/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250537/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250537/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000250537 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000250537/slicer_17_1.png\n", "Saving slicer 2 for patient 0000250537 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000250537/slicer_18_2.png\n", "Saving slicer 3 for patient 0000250537 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000250537/slicer_17_3.png\n", "Saving slicer 4 for patient 0000250537 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000250537/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000250537.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293506/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293506/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293506/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293506/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293506/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293506/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293506/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293506/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293506 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293506/slicer_23_1.png\n", "Saving slicer 2 for patient 0000293506 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293506/slicer_20_2.png\n", "Saving slicer 3 for patient 0000293506 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293506/slicer_23_3.png\n", "Saving slicer 4 for patient 0000293506 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293506/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000293506.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000309476/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000309476/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000309476/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000309476/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309476/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309476/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309476/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309476/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [6, 7, 8, 9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [7, 8, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [7, 8, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 12\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [12] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000309476 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309476/slicer_17_1.png\n", "Saving slicer 2 for patient 0000309476 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309476/slicer_12_2.png\n", "Saving slicer 3 for patient 0000309476 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309476/slicer_17_3.png\n", "Saving slicer 4 for patient 0000309476 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309476/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000309476.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274517/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274517/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274517/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274517/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274517/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274517/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274517/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274517/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274517 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274517/slicer_16_1.png\n", "Saving slicer 2 for patient 0000274517 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274517/slicer_26_2.png\n", "Saving slicer 3 for patient 0000274517 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274517/slicer_16_3.png\n", "Saving slicer 4 for patient 0000274517 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274517/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000274517.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270579/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270579/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270579/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270579/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270579/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270579/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270579/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270579/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [17, 18, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [15, 16, 17, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [15, 16, 17, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 30\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000270579 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270579/slicer_28_1.png\n", "Saving slicer 2 for patient 0000270579 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270579/slicer_30_2.png\n", "Saving slicer 3 for patient 0000270579 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270579/slicer_28_3.png\n", "Saving slicer 4 for patient 0000270579 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270579/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000270579.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279985/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279985/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279985/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279985/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279985/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279985/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279985/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279985/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 12\n", "Random T2 slicer index chosen: 13\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279985 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279985/slicer_12_1.png\n", "Saving slicer 2 for patient 0000279985 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279985/slicer_13_2.png\n", "Saving slicer 3 for patient 0000279985 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279985/slicer_12_3.png\n", "Saving slicer 4 for patient 0000279985 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279985/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000279985.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263062/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263062/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263062/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263062/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263062/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263062/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263062/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263062/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [16, 17, 18, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000263062 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263062/slicer_28_1.png\n", "Saving slicer 2 for patient 0000263062 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263062/slicer_17_2.png\n", "Saving slicer 3 for patient 0000263062 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263062/slicer_28_3.png\n", "Saving slicer 4 for patient 0000263062 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263062/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000263062.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000239794/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000239794/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000239794/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000239794/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239794/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239794/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239794/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239794/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [13, 14, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [13, 14, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000239794 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239794/slicer_17_1.png\n", "Saving slicer 2 for patient 0000239794 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239794/slicer_20_2.png\n", "Saving slicer 3 for patient 0000239794 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239794/slicer_17_3.png\n", "Saving slicer 4 for patient 0000239794 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239794/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000239794.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272649/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272649/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272649/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272649/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272649/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272649/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272649/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272649/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [17, 18, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [17, 18, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [25] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000272649 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272649/slicer_28_1.png\n", "Saving slicer 2 for patient 0000272649 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272649/slicer_25_2.png\n", "Saving slicer 3 for patient 0000272649 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272649/slicer_28_3.png\n", "Saving slicer 4 for patient 0000272649 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272649/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000272649.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263496/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263496/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263496/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263496/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263496/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263496/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263496/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263496/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 11\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000263496 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263496/slicer_11_1.png\n", "Saving slicer 2 for patient 0000263496 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263496/slicer_23_2.png\n", "Saving slicer 3 for patient 0000263496 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263496/slicer_11_3.png\n", "Saving slicer 4 for patient 0000263496 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263496/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000263496.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000308419/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000308419/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000308419/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000308419/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308419/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308419/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308419/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308419/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000308419 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308419/slicer_27_1.png\n", "Saving slicer 2 for patient 0000308419 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308419/slicer_28_2.png\n", "Saving slicer 3 for patient 0000308419 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308419/slicer_27_3.png\n", "Saving slicer 4 for patient 0000308419 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308419/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000308419.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280187/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280187/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280187/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280187/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280187/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280187/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280187/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280187/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 34]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 34]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 13\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280187 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280187/slicer_16_1.png\n", "Saving slicer 2 for patient 0000280187 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280187/slicer_13_2.png\n", "Saving slicer 3 for patient 0000280187 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280187/slicer_16_3.png\n", "Saving slicer 4 for patient 0000280187 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280187/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000280187.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283804/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283804/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283804/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283804/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283804/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283804/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283804/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283804/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 13\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283804 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283804/slicer_22_1.png\n", "Saving slicer 2 for patient 0000283804 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283804/slicer_13_2.png\n", "Saving slicer 3 for patient 0000283804 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283804/slicer_22_3.png\n", "Saving slicer 4 for patient 0000283804 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283804/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000283804.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000305795/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000305795/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000305795/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000305795/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305795/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305795/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305795/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305795/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000305795 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305795/slicer_22_1.png\n", "Saving slicer 2 for patient 0000305795 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305795/slicer_21_2.png\n", "Saving slicer 3 for patient 0000305795 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305795/slicer_22_3.png\n", "Saving slicer 4 for patient 0000305795 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305795/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000305795.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000296004/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000296004/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000296004/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000296004/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296004/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296004/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296004/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296004/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000296004 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296004/slicer_26_1.png\n", "Saving slicer 2 for patient 0000296004 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296004/slicer_21_2.png\n", "Saving slicer 3 for patient 0000296004 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296004/slicer_26_3.png\n", "Saving slicer 4 for patient 0000296004 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296004/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000296004.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270335/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270335/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270335/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270335/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270335/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270335/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270335/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270335/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [1, 2, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [1, 2, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 1\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "Slice layer [1] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000270335 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270335/slicer_1_1.png\n", "Saving slicer 2 for patient 0000270335 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270335/slicer_15_2.png\n", "Saving slicer 3 for patient 0000270335 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270335/slicer_1_3.png\n", "Saving slicer 4 for patient 0000270335 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270335/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000270335.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302078/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302078/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302078/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302078/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302078/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302078/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302078/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302078/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 18, 19, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [15, 18, 19, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T2 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302078 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302078/slicer_18_1.png\n", "Saving slicer 2 for patient 0000302078 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302078/slicer_21_2.png\n", "Saving slicer 3 for patient 0000302078 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302078/slicer_18_3.png\n", "Saving slicer 4 for patient 0000302078 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302078/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000302078.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282583/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282583/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282583/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282583/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282583/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282583/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282583/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282583/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 8\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [8] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282583 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282583/slicer_20_1.png\n", "Saving slicer 2 for patient 0000282583 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282583/slicer_8_2.png\n", "Saving slicer 3 for patient 0000282583 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282583/slicer_20_3.png\n", "Saving slicer 4 for patient 0000282583 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282583/slicer_8_4.png\n", "Successfully saved 4 slices for patient 0000282583.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290074/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290074/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290074/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290074/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290074/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290074/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290074/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290074/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [17, 26, 27, 28]\n", "After T2 ROI slices: [17, 26, 27, 28]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [24] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000290074 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290074/slicer_15_1.png\n", "Saving slicer 2 for patient 0000290074 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290074/slicer_24_2.png\n", "Saving slicer 3 for patient 0000290074 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290074/slicer_15_3.png\n", "Saving slicer 4 for patient 0000290074 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290074/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000290074.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293609/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293609/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293609/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293609/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293609/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293609/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293609/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293609/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 7\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [7] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293609 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293609/slicer_20_1.png\n", "Saving slicer 2 for patient 0000293609 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293609/slicer_7_2.png\n", "Saving slicer 3 for patient 0000293609 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293609/slicer_20_3.png\n", "Saving slicer 4 for patient 0000293609 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293609/slicer_7_4.png\n", "Successfully saved 4 slices for patient 0000293609.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000273559/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000273559/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000273559/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000273559/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273559/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273559/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273559/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273559/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 17, 18, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 17, 18, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [23] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273559 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273559/slicer_15_1.png\n", "Saving slicer 2 for patient 0000273559 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273559/slicer_23_2.png\n", "Saving slicer 3 for patient 0000273559 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273559/slicer_15_3.png\n", "Saving slicer 4 for patient 0000273559 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273559/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000273559.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280943/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280943/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280943/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280943/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280943/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280943/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280943/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280943/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280943 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280943/slicer_21_1.png\n", "Saving slicer 2 for patient 0000280943 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280943/slicer_28_2.png\n", "Saving slicer 3 for patient 0000280943 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280943/slicer_21_3.png\n", "Saving slicer 4 for patient 0000280943 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280943/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000280943.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263576/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263576/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263576/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263576/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263576/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263576/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263576/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263576/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [11, 12, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [12, 19, 20, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [12, 19, 20, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000263576 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263576/slicer_19_1.png\n", "Saving slicer 2 for patient 0000263576 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263576/slicer_18_2.png\n", "Saving slicer 3 for patient 0000263576 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263576/slicer_19_3.png\n", "Saving slicer 4 for patient 0000263576 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263576/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000263576.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1115646/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1115646/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1115646/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1115646/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1115646/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1115646/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1115646/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1115646/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [0, 3, 4, 5, 6, 14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [0, 3, 4, 5, 6, 14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [16, 17, 18, 24, 25, 26, 27]\n", "After T2 ROI slices: [16, 17, 18, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1115646 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1115646/slicer_18_1.png\n", "Saving slicer 2 for patient 00C1115646 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1115646/slicer_25_2.png\n", "Saving slicer 3 for patient 00C1115646 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1115646/slicer_18_3.png\n", "Saving slicer 4 for patient 00C1115646 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1115646/slicer_25_4.png\n", "Successfully saved 4 slices for patient 00C1115646.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000235830/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000235830/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000235830/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000235830/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235830/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235830/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235830/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235830/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000235830 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235830/slicer_14_1.png\n", "Saving slicer 2 for patient 0000235830 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235830/slicer_21_2.png\n", "Saving slicer 3 for patient 0000235830 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235830/slicer_14_3.png\n", "Saving slicer 4 for patient 0000235830 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235830/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000235830.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000278818/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000278818/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000278818/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000278818/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278818/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278818/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278818/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278818/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 19, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [14, 19, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 32\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000278818 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278818/slicer_32_1.png\n", "Saving slicer 2 for patient 0000278818 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278818/slicer_26_2.png\n", "Saving slicer 3 for patient 0000278818 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278818/slicer_32_3.png\n", "Saving slicer 4 for patient 0000278818 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278818/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000278818.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000285108/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000285108/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000285108/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000285108/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285108/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285108/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285108/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285108/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [13, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [13, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [14] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000285108 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285108/slicer_16_1.png\n", "Saving slicer 2 for patient 0000285108 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285108/slicer_14_2.png\n", "Saving slicer 3 for patient 0000285108 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285108/slicer_16_3.png\n", "Saving slicer 4 for patient 0000285108 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285108/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000285108.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287739/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287739/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287739/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287739/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287739/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287739/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287739/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287739/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287739 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287739/slicer_16_1.png\n", "Saving slicer 2 for patient 0000287739 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287739/slicer_19_2.png\n", "Saving slicer 3 for patient 0000287739 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287739/slicer_16_3.png\n", "Saving slicer 4 for patient 0000287739 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287739/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000287739.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000271583/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000271583/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000271583/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000271583/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271583/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271583/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271583/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271583/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000271583 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271583/slicer_21_1.png\n", "Saving slicer 2 for patient 0000271583 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271583/slicer_23_2.png\n", "Saving slicer 3 for patient 0000271583 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271583/slicer_21_3.png\n", "Saving slicer 4 for patient 0000271583 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271583/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000271583.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000237567/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000237567/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000237567/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000237567/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237567/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237567/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237567/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237567/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237567 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000237567/slicer_25_1.png\n", "Saving slicer 2 for patient 0000237567 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000237567/slicer_17_2.png\n", "Saving slicer 3 for patient 0000237567 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000237567/slicer_25_3.png\n", "Saving slicer 4 for patient 0000237567 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000237567/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000237567.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000244878/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000244878/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000244878/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000244878/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244878/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244878/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244878/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244878/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000244878 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244878/slicer_20_1.png\n", "Saving slicer 2 for patient 0000244878 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244878/slicer_25_2.png\n", "Saving slicer 3 for patient 0000244878 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244878/slicer_20_3.png\n", "Saving slicer 4 for patient 0000244878 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244878/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000244878.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1091740/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1091740/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1091740/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1091740/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1091740/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1091740/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1091740/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1091740/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 19, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [18, 19, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [19, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [19, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 31\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1091740 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1091740/slicer_30_1.png\n", "Saving slicer 2 for patient 00C1091740 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1091740/slicer_31_2.png\n", "Saving slicer 3 for patient 00C1091740 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1091740/slicer_30_3.png\n", "Saving slicer 4 for patient 00C1091740 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1091740/slicer_31_4.png\n", "Successfully saved 4 slices for patient 00C1091740.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280222/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280222/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280222/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280222/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280222/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280222/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280222/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280222/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [11, 12, 13, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [13, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [13, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280222 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280222/slicer_29_1.png\n", "Saving slicer 2 for patient 0000280222 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280222/slicer_20_2.png\n", "Saving slicer 3 for patient 0000280222 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280222/slicer_29_3.png\n", "Saving slicer 4 for patient 0000280222 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280222/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000280222.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000264923/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000264923/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000264923/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000264923/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264923/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264923/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264923/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264923/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [5, 6, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 25, 26, 27, 28]\n", "After T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000264923 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264923/slicer_19_1.png\n", "Saving slicer 2 for patient 0000264923 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264923/slicer_27_2.png\n", "Saving slicer 3 for patient 0000264923 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264923/slicer_19_3.png\n", "Saving slicer 4 for patient 0000264923 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264923/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000264923.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266152/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266152/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266152/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266152/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266152/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266152/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266152/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266152/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266152 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266152/slicer_26_1.png\n", "Saving slicer 2 for patient 0000266152 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266152/slicer_21_2.png\n", "Saving slicer 3 for patient 0000266152 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266152/slicer_26_3.png\n", "Saving slicer 4 for patient 0000266152 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266152/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000266152.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000278548/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000278548/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000278548/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000278548/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278548/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278548/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278548/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278548/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [9, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [17, 18, 24, 25, 26, 27]\n", "After T2 ROI slices: [17, 18, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000278548 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278548/slicer_22_1.png\n", "Saving slicer 2 for patient 0000278548 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278548/slicer_18_2.png\n", "Saving slicer 3 for patient 0000278548 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278548/slicer_22_3.png\n", "Saving slicer 4 for patient 0000278548 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278548/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000278548.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302188/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302188/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302188/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302188/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302188/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302188/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302188/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302188/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [10, 11, 12, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [10, 11, 12, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302188 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302188/slicer_16_1.png\n", "Saving slicer 2 for patient 0000302188 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302188/slicer_19_2.png\n", "Saving slicer 3 for patient 0000302188 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302188/slicer_16_3.png\n", "Saving slicer 4 for patient 0000302188 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302188/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000302188.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000246912/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000246912/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000246912/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000246912/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246912/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246912/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246912/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246912/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 19, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [17, 18, 19, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [18, 19, 20, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [18, 19, 20, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000246912 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246912/slicer_18_1.png\n", "Saving slicer 2 for patient 0000246912 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246912/slicer_19_2.png\n", "Saving slicer 3 for patient 0000246912 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246912/slicer_18_3.png\n", "Saving slicer 4 for patient 0000246912 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246912/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000246912.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284894/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284894/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284894/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284894/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284894/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284894/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284894/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284894/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 22, 25, 26, 27]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 22, 25, 26, 27]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284894 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284894/slicer_27_1.png\n", "Saving slicer 2 for patient 0000284894 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284894/slicer_15_2.png\n", "Saving slicer 3 for patient 0000284894 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284894/slicer_27_3.png\n", "Saving slicer 4 for patient 0000284894 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284894/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000284894.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295665/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295665/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295665/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295665/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295665/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295665/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295665/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295665/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295665 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295665/slicer_22_1.png\n", "Saving slicer 2 for patient 0000295665 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295665/slicer_18_2.png\n", "Saving slicer 3 for patient 0000295665 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295665/slicer_22_3.png\n", "Saving slicer 4 for patient 0000295665 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295665/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000295665.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000310713/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000310713/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000310713/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000310713/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310713/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310713/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310713/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310713/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [16, 17, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [16, 17, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000310713 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310713/slicer_28_1.png\n", "Saving slicer 2 for patient 0000310713 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310713/slicer_27_2.png\n", "Saving slicer 3 for patient 0000310713 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310713/slicer_28_3.png\n", "Saving slicer 4 for patient 0000310713 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310713/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000310713.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302647/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302647/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302647/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302647/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302647/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302647/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302647/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302647/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 10\n", "Random T2 slicer index chosen: 30\n", "A total of 1 slices were extracted!\n", "Slice layer [10] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [30] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302647 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302647/slicer_10_1.png\n", "Saving slicer 2 for patient 0000302647 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302647/slicer_30_2.png\n", "Saving slicer 3 for patient 0000302647 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302647/slicer_10_3.png\n", "Saving slicer 4 for patient 0000302647 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302647/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000302647.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000269944/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000269944/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000269944/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000269944/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269944/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269944/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269944/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269944/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 31\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000269944 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269944/slicer_20_1.png\n", "Saving slicer 2 for patient 0000269944 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269944/slicer_31_2.png\n", "Saving slicer 3 for patient 0000269944 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269944/slicer_20_3.png\n", "Saving slicer 4 for patient 0000269944 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269944/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000269944.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263550/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263550/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263550/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263550/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263550/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263550/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263550/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263550/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 6\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [6] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000263550 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263550/slicer_21_1.png\n", "Saving slicer 2 for patient 0000263550 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263550/slicer_6_2.png\n", "Saving slicer 3 for patient 0000263550 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263550/slicer_21_3.png\n", "Saving slicer 4 for patient 0000263550 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263550/slicer_6_4.png\n", "Successfully saved 4 slices for patient 0000263550.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000262089/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000262089/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000262089/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000262089/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262089/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262089/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262089/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262089/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [15, 16, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [15, 16, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 11\n", "Random T2 slicer index chosen: 13\n", "A total of 1 slices were extracted!\n", "Slice layer [11] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000262089 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262089/slicer_11_1.png\n", "Saving slicer 2 for patient 0000262089 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262089/slicer_13_2.png\n", "Saving slicer 3 for patient 0000262089 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262089/slicer_11_3.png\n", "Saving slicer 4 for patient 0000262089 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262089/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000262089.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000260311/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000260311/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000260311/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000260311/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260311/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260311/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260311/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260311/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [17, 18, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [17, 18, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000260311 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260311/slicer_27_1.png\n", "Saving slicer 2 for patient 0000260311 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260311/slicer_19_2.png\n", "Saving slicer 3 for patient 0000260311 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260311/slicer_27_3.png\n", "Saving slicer 4 for patient 0000260311 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260311/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000260311.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283742/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283742/mask_all.nii.gz\n", "Image shape: (40, 384, 384), Mask shape: (40, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283742/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283742/mask_all.nii.gz\n", "Image shape: (40, 384, 384), Mask shape: (40, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283742/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283742/mask_all.nii.gz\n", "Image shape: (40, 384, 384), Mask shape: (40, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283742/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283742/mask_all.nii.gz\n", "Image shape: (40, 384, 384), Mask shape: (40, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35]\n", "Before T2 ROI slices: [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35]\n", "After T1 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "After T2 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "Random T1 slicer index chosen: 33\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283742 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283742/slicer_33_1.png\n", "Saving slicer 2 for patient 0000283742 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283742/slicer_29_2.png\n", "Saving slicer 3 for patient 0000283742 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283742/slicer_33_3.png\n", "Saving slicer 4 for patient 0000283742 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283742/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000283742.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293091/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293091/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293091/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293091/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293091/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293091/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293091/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293091/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 19, 20, 21, 22, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [17, 18, 19, 20, 21, 22, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [19, 20, 21, 26, 27, 28, 29]\n", "After T2 ROI slices: [19, 20, 21, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293091 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293091/slicer_20_1.png\n", "Saving slicer 2 for patient 0000293091 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293091/slicer_20_2.png\n", "Saving slicer 3 for patient 0000293091 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293091/slicer_20_3.png\n", "Saving slicer 4 for patient 0000293091 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293091/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000293091.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000243904/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000243904/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000243904/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000243904/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243904/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243904/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243904/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243904/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 3\n", "Random T2 slicer index chosen: 8\n", "A total of 1 slices were extracted!\n", "Slice layer [3] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000243904 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000243904/slicer_3_1.png\n", "Saving slicer 2 for patient 0000243904 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000243904/slicer_8_2.png\n", "Saving slicer 3 for patient 0000243904 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000243904/slicer_3_3.png\n", "Saving slicer 4 for patient 0000243904 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000243904/slicer_8_4.png\n", "Successfully saved 4 slices for patient 0000243904.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297587/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297587/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297587/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297587/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297587/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297587/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297587/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297587/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 12, 13, 14, 15, 16, 17, 18, 23, 24, 25, 26]\n", "Before T2 ROI slices: [7, 8, 9, 12, 13, 14, 15, 16, 17, 18, 23, 24, 25, 26]\n", "After T1 ROI slices: [8, 9, 15, 16, 23, 24]\n", "After T2 ROI slices: [8, 9, 15, 16, 23, 24]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [25] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297587 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297587/slicer_13_1.png\n", "Saving slicer 2 for patient 0000297587 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297587/slicer_25_2.png\n", "Saving slicer 3 for patient 0000297587 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297587/slicer_13_3.png\n", "Saving slicer 4 for patient 0000297587 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297587/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000297587.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300624/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300624/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300624/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300624/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300624/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300624/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300624/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300624/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [17, 18, 19, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [17, 18, 19, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000300624 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300624/slicer_13_1.png\n", "Saving slicer 2 for patient 0000300624 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300624/slicer_27_2.png\n", "Saving slicer 3 for patient 0000300624 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300624/slicer_13_3.png\n", "Saving slicer 4 for patient 0000300624 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300624/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000300624.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000291125/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000291125/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000291125/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000291125/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291125/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291125/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291125/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291125/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [25, 26, 27, 28]\n", "After T2 ROI slices: [25, 26, 27, 28]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000291125 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291125/slicer_27_1.png\n", "Saving slicer 2 for patient 0000291125 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291125/slicer_26_2.png\n", "Saving slicer 3 for patient 0000291125 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291125/slicer_27_3.png\n", "Saving slicer 4 for patient 0000291125 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291125/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000291125.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257119/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257119/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257119/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257119/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257119/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257119/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257119/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257119/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000257119 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257119/slicer_14_1.png\n", "Saving slicer 2 for patient 0000257119 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257119/slicer_18_2.png\n", "Saving slicer 3 for patient 0000257119 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257119/slicer_14_3.png\n", "Saving slicer 4 for patient 0000257119 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257119/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000257119.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266028/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266028/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266028/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266028/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266028/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266028/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266028/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266028/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266028 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266028/slicer_24_1.png\n", "Saving slicer 2 for patient 0000266028 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266028/slicer_25_2.png\n", "Saving slicer 3 for patient 0000266028 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266028/slicer_24_3.png\n", "Saving slicer 4 for patient 0000266028 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266028/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000266028.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287152/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287152/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287152/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287152/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287152/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287152/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287152/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287152/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [15, 17, 18, 19, 20, 21, 22, 25, 26, 27, 28]\n", "After T2 ROI slices: [15, 17, 18, 19, 20, 21, 22, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287152 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287152/slicer_21_1.png\n", "Saving slicer 2 for patient 0000287152 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287152/slicer_29_2.png\n", "Saving slicer 3 for patient 0000287152 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287152/slicer_21_3.png\n", "Saving slicer 4 for patient 0000287152 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287152/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000287152.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000260830/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000260830/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000260830/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000260830/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260830/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260830/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260830/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260830/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [8, 9, 14, 15, 16, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [8, 9, 14, 15, 16, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000260830 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260830/slicer_27_1.png\n", "Saving slicer 2 for patient 0000260830 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260830/slicer_29_2.png\n", "Saving slicer 3 for patient 0000260830 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260830/slicer_27_3.png\n", "Saving slicer 4 for patient 0000260830 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260830/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000260830.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000269669/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000269669/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000269669/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000269669/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269669/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269669/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269669/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269669/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [5, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000269669 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269669/slicer_25_1.png\n", "Saving slicer 2 for patient 0000269669 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269669/slicer_24_2.png\n", "Saving slicer 3 for patient 0000269669 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269669/slicer_25_3.png\n", "Saving slicer 4 for patient 0000269669 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269669/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000269669.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000299416/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000299416/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000299416/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000299416/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299416/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299416/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299416/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299416/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 26, 27]\n", "After T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 26, 27]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000299416 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299416/slicer_26_1.png\n", "Saving slicer 2 for patient 0000299416 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299416/slicer_21_2.png\n", "Saving slicer 3 for patient 0000299416 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299416/slicer_26_3.png\n", "Saving slicer 4 for patient 0000299416 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299416/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000299416.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245792/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245792/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245792/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245792/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245792/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245792/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245792/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245792/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 1\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [1] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245792 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245792/slicer_16_1.png\n", "Saving slicer 2 for patient 0000245792 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245792/slicer_1_2.png\n", "Saving slicer 3 for patient 0000245792 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245792/slicer_16_3.png\n", "Saving slicer 4 for patient 0000245792 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245792/slicer_1_4.png\n", "Successfully saved 4 slices for patient 0000245792.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1119281/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1119281/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1119281/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1119281/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1119281/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1119281/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1119281/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1119281/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 9, 10, 11, 12, 13, 14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [2, 9, 10, 11, 12, 13, 14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [11, 12, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [11, 12, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 9\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [9] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1119281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1119281/slicer_26_1.png\n", "Saving slicer 2 for patient 00C1119281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1119281/slicer_9_2.png\n", "Saving slicer 3 for patient 00C1119281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1119281/slicer_26_3.png\n", "Saving slicer 4 for patient 00C1119281 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1119281/slicer_9_4.png\n", "Successfully saved 4 slices for patient 00C1119281.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298745/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298745/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298745/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298745/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298745/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298745/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298745/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298745/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 31\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298745 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298745/slicer_31_1.png\n", "Saving slicer 2 for patient 0000298745 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298745/slicer_26_2.png\n", "Saving slicer 3 for patient 0000298745 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298745/slicer_31_3.png\n", "Saving slicer 4 for patient 0000298745 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298745/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000298745.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000278864/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000278864/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000278864/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000278864/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278864/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278864/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278864/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278864/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 31, 32, 33]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 31, 32, 33]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000278864 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278864/slicer_29_1.png\n", "Saving slicer 2 for patient 0000278864 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278864/slicer_16_2.png\n", "Saving slicer 3 for patient 0000278864 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278864/slicer_29_3.png\n", "Saving slicer 4 for patient 0000278864 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278864/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000278864.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000296240/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000296240/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000296240/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000296240/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296240/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296240/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296240/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296240/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [0, 1, 2, 3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [0, 1, 2, 3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [0, 1, 2, 3, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [0, 1, 2, 3, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 9\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000296240 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296240/slicer_9_1.png\n", "Saving slicer 2 for patient 0000296240 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296240/slicer_16_2.png\n", "Saving slicer 3 for patient 0000296240 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296240/slicer_9_3.png\n", "Saving slicer 4 for patient 0000296240 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296240/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000296240.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000261536/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000261536/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000261536/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000261536/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261536/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261536/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261536/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261536/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [9, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000261536 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000261536/slicer_24_1.png\n", "Saving slicer 2 for patient 0000261536 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000261536/slicer_25_2.png\n", "Saving slicer 3 for patient 0000261536 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000261536/slicer_24_3.png\n", "Saving slicer 4 for patient 0000261536 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000261536/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000261536.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255931/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255931/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255931/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255931/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255931/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255931/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255931/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255931/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33]\n", "Before T2 ROI slices: [2, 3, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33]\n", "After T1 ROI slices: [2, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [2, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 2\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255931 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255931/slicer_2_1.png\n", "Saving slicer 2 for patient 0000255931 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255931/slicer_24_2.png\n", "Saving slicer 3 for patient 0000255931 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255931/slicer_2_3.png\n", "Saving slicer 4 for patient 0000255931 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255931/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000255931.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000264276/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000264276/mask_all.nii.gz\n", "Image shape: (36, 432, 432), Mask shape: (36, 432, 432)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000264276/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000264276/mask_all.nii.gz\n", "Image shape: (36, 432, 432), Mask shape: (36, 432, 432)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264276/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264276/mask_all.nii.gz\n", "Image shape: (36, 432, 432), Mask shape: (36, 432, 432)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264276/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264276/mask_all.nii.gz\n", "Image shape: (36, 432, 432), Mask shape: (36, 432, 432)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [17, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [17, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000264276 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264276/slicer_28_1.png\n", "Saving slicer 2 for patient 0000264276 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264276/slicer_17_2.png\n", "Saving slicer 3 for patient 0000264276 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264276/slicer_28_3.png\n", "Saving slicer 4 for patient 0000264276 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264276/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000264276.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298338/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298338/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298338/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298338/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298338/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298338/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298338/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298338/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298338 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298338/slicer_29_1.png\n", "Saving slicer 2 for patient 0000298338 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298338/slicer_23_2.png\n", "Saving slicer 3 for patient 0000298338 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298338/slicer_29_3.png\n", "Saving slicer 4 for patient 0000298338 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298338/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000298338.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295832/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295832/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295832/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295832/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295832/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295832/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295832/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295832/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295832 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295832/slicer_17_1.png\n", "Saving slicer 2 for patient 0000295832 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295832/slicer_19_2.png\n", "Saving slicer 3 for patient 0000295832 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295832/slicer_17_3.png\n", "Saving slicer 4 for patient 0000295832 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295832/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000295832.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295397/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295397/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295397/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295397/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295397/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295397/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295397/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295397/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [12, 14, 15, 18, 19, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [12, 14, 15, 18, 19, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295397 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295397/slicer_29_1.png\n", "Saving slicer 2 for patient 0000295397 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295397/slicer_15_2.png\n", "Saving slicer 3 for patient 0000295397 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295397/slicer_29_3.png\n", "Saving slicer 4 for patient 0000295397 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295397/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000295397.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000258105/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000258105/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000258105/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000258105/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258105/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258105/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258105/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258105/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [16, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 11\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [11] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258105 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258105/slicer_21_1.png\n", "Saving slicer 2 for patient 0000258105 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258105/slicer_11_2.png\n", "Saving slicer 3 for patient 0000258105 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258105/slicer_21_3.png\n", "Saving slicer 4 for patient 0000258105 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258105/slicer_11_4.png\n", "Successfully saved 4 slices for patient 0000258105.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000236915/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000236915/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000236915/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000236915/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000236915/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000236915/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000236915/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000236915/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 24, 25, 26]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 24, 25, 26]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000236915 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000236915/slicer_13_1.png\n", "Saving slicer 2 for patient 0000236915 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000236915/slicer_19_2.png\n", "Saving slicer 3 for patient 0000236915 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000236915/slicer_13_3.png\n", "Saving slicer 4 for patient 0000236915 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000236915/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000236915.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000264300/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000264300/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000264300/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000264300/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264300/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264300/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264300/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264300/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000264300 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264300/slicer_13_1.png\n", "Saving slicer 2 for patient 0000264300 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264300/slicer_26_2.png\n", "Saving slicer 3 for patient 0000264300 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264300/slicer_13_3.png\n", "Saving slicer 4 for patient 0000264300 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264300/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000264300.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287551/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287551/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287551/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287551/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287551/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287551/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287551/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287551/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [7, 8, 9, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [9, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [9, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287551 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287551/slicer_13_1.png\n", "Saving slicer 2 for patient 0000287551 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287551/slicer_15_2.png\n", "Saving slicer 3 for patient 0000287551 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287551/slicer_13_3.png\n", "Saving slicer 4 for patient 0000287551 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287551/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000287551.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257702/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257702/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257702/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257702/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257702/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257702/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257702/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257702/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [16, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [16, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000257702 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257702/slicer_13_1.png\n", "Saving slicer 2 for patient 0000257702 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257702/slicer_24_2.png\n", "Saving slicer 3 for patient 0000257702 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257702/slicer_13_3.png\n", "Saving slicer 4 for patient 0000257702 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257702/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000257702.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257618/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257618/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257618/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257618/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257618/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257618/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257618/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257618/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 2\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "Slice layer [2] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000257618 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257618/slicer_2_1.png\n", "Saving slicer 2 for patient 0000257618 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257618/slicer_20_2.png\n", "Saving slicer 3 for patient 0000257618 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257618/slicer_2_3.png\n", "Saving slicer 4 for patient 0000257618 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257618/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000257618.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245917/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245917/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245917/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245917/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245917/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245917/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245917/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245917/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "Slice layer [27] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245917 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245917/slicer_27_1.png\n", "Saving slicer 2 for patient 0000245917 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245917/slicer_25_2.png\n", "Saving slicer 3 for patient 0000245917 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245917/slicer_27_3.png\n", "Saving slicer 4 for patient 0000245917 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245917/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000245917.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255977/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255977/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255977/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255977/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255977/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255977/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255977/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255977/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "Slice layer [28] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255977 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255977/slicer_28_1.png\n", "Saving slicer 2 for patient 0000255977 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255977/slicer_16_2.png\n", "Saving slicer 3 for patient 0000255977 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255977/slicer_28_3.png\n", "Saving slicer 4 for patient 0000255977 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255977/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000255977.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000285173/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000285173/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000285173/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000285173/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285173/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285173/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285173/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285173/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [9, 10, 11, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [9, 10, 11, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 8\n", "A total of 1 slices were extracted!\n", "Slice layer [14] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [8] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000285173 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285173/slicer_14_1.png\n", "Saving slicer 2 for patient 0000285173 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285173/slicer_8_2.png\n", "Saving slicer 3 for patient 0000285173 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285173/slicer_14_3.png\n", "Saving slicer 4 for patient 0000285173 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285173/slicer_8_4.png\n", "Successfully saved 4 slices for patient 0000285173.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298212/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298212/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298212/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298212/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298212/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298212/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298212/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298212/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298212 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298212/slicer_28_1.png\n", "Saving slicer 2 for patient 0000298212 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298212/slicer_28_2.png\n", "Saving slicer 3 for patient 0000298212 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298212/slicer_28_3.png\n", "Saving slicer 4 for patient 0000298212 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298212/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000298212.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1131714/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1131714/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1131714/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1131714/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1131714/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1131714/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1131714/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1131714/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 7, 8, 9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [4, 5, 7, 8, 9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 8\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "Slice layer [8] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1131714 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1131714/slicer_8_1.png\n", "Saving slicer 2 for patient 00C1131714 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1131714/slicer_20_2.png\n", "Saving slicer 3 for patient 00C1131714 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1131714/slicer_8_3.png\n", "Saving slicer 4 for patient 00C1131714 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1131714/slicer_20_4.png\n", "Successfully saved 4 slices for patient 00C1131714.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000294985/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000294985/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000294985/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000294985/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294985/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294985/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294985/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294985/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 10\n", "Random T2 slicer index chosen: 7\n", "A total of 1 slices were extracted!\n", "Slice layer [10] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [7] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000294985 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294985/slicer_10_1.png\n", "Saving slicer 2 for patient 0000294985 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294985/slicer_7_2.png\n", "Saving slicer 3 for patient 0000294985 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294985/slicer_10_3.png\n", "Saving slicer 4 for patient 0000294985 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294985/slicer_7_4.png\n", "Successfully saved 4 slices for patient 0000294985.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297007/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297007/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297007/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297007/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297007/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297007/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297007/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297007/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 19, 20, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [17, 18, 19, 20, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297007 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297007/slicer_18_1.png\n", "Saving slicer 2 for patient 0000297007 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297007/slicer_18_2.png\n", "Saving slicer 3 for patient 0000297007 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297007/slicer_18_3.png\n", "Saving slicer 4 for patient 0000297007 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297007/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000297007.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274360/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274360/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274360/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274360/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274360/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274360/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274360/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274360/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [5, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [5, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 13\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274360 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274360/slicer_25_1.png\n", "Saving slicer 2 for patient 0000274360 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274360/slicer_13_2.png\n", "Saving slicer 3 for patient 0000274360 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274360/slicer_25_3.png\n", "Saving slicer 4 for patient 0000274360 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274360/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000274360.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000261074/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000261074/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000261074/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000261074/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261074/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261074/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261074/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261074/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 23, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 23, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 5\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "Slice layer [5] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000261074 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000261074/slicer_5_1.png\n", "Saving slicer 2 for patient 0000261074 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000261074/slicer_26_2.png\n", "Saving slicer 3 for patient 0000261074 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000261074/slicer_5_3.png\n", "Saving slicer 4 for patient 0000261074 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000261074/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000261074.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267095/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267095/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267095/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267095/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267095/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267095/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267095/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267095/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267095/slicer_17_1.png\n", "Saving slicer 2 for patient 0000267095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267095/slicer_19_2.png\n", "Saving slicer 3 for patient 0000267095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267095/slicer_17_3.png\n", "Saving slicer 4 for patient 0000267095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267095/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000267095.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1090356/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1090356/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1090356/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1090356/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1090356/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1090356/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1090356/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1090356/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1090356 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1090356/slicer_22_1.png\n", "Saving slicer 2 for patient 00C1090356 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1090356/slicer_18_2.png\n", "Saving slicer 3 for patient 00C1090356 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1090356/slicer_22_3.png\n", "Saving slicer 4 for patient 00C1090356 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1090356/slicer_18_4.png\n", "Successfully saved 4 slices for patient 00C1090356.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000303419/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000303419/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000303419/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000303419/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000303419/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000303419/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000303419/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000303419/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 8\n", "Random T2 slicer index chosen: 8\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000303419 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000303419/slicer_8_1.png\n", "Saving slicer 2 for patient 0000303419 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000303419/slicer_8_2.png\n", "Saving slicer 3 for patient 0000303419 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000303419/slicer_8_3.png\n", "Saving slicer 4 for patient 0000303419 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000303419/slicer_8_4.png\n", "Successfully saved 4 slices for patient 0000303419.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000235474/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000235474/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000235474/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000235474/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235474/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235474/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235474/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235474/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [16, 17, 18, 19, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [16, 17, 18, 19, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000235474 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235474/slicer_30_1.png\n", "Saving slicer 2 for patient 0000235474 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235474/slicer_18_2.png\n", "Saving slicer 3 for patient 0000235474 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235474/slicer_30_3.png\n", "Saving slicer 4 for patient 0000235474 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235474/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000235474.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281162/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281162/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281162/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281162/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281162/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281162/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281162/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281162/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000281162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281162/slicer_24_1.png\n", "Saving slicer 2 for patient 0000281162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281162/slicer_29_2.png\n", "Saving slicer 3 for patient 0000281162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281162/slicer_24_3.png\n", "Saving slicer 4 for patient 0000281162 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281162/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000281162.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000253461/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000253461/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000253461/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000253461/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253461/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253461/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253461/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253461/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 2\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [2] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000253461 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000253461/slicer_27_1.png\n", "Saving slicer 2 for patient 0000253461 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000253461/slicer_2_2.png\n", "Saving slicer 3 for patient 0000253461 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000253461/slicer_27_3.png\n", "Saving slicer 4 for patient 0000253461 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000253461/slicer_2_4.png\n", "Successfully saved 4 slices for patient 0000253461.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257392/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257392/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257392/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257392/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257392/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257392/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257392/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257392/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [10, 11, 12, 17, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [10, 11, 12, 17, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000257392 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257392/slicer_22_1.png\n", "Saving slicer 2 for patient 0000257392 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257392/slicer_16_2.png\n", "Saving slicer 3 for patient 0000257392 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257392/slicer_22_3.png\n", "Saving slicer 4 for patient 0000257392 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257392/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000257392.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000244093/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000244093/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000244093/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000244093/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244093/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244093/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244093/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244093/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [16, 17, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [16, 17, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "Slice layer [27] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000244093 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244093/slicer_27_1.png\n", "Saving slicer 2 for patient 0000244093 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244093/slicer_25_2.png\n", "Saving slicer 3 for patient 0000244093 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244093/slicer_27_3.png\n", "Saving slicer 4 for patient 0000244093 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244093/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000244093.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284060/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284060/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284060/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284060/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284060/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284060/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284060/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284060/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284060 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284060/slicer_26_1.png\n", "Saving slicer 2 for patient 0000284060 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284060/slicer_27_2.png\n", "Saving slicer 3 for patient 0000284060 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284060/slicer_26_3.png\n", "Saving slicer 4 for patient 0000284060 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284060/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000284060.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274721/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274721/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274721/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274721/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274721/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274721/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274721/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274721/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274721 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274721/slicer_19_1.png\n", "Saving slicer 2 for patient 0000274721 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274721/slicer_21_2.png\n", "Saving slicer 3 for patient 0000274721 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274721/slicer_19_3.png\n", "Saving slicer 4 for patient 0000274721 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274721/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000274721.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292963/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292963/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292963/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292963/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292963/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292963/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292963/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292963/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [20, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [20, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000292963 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292963/slicer_20_1.png\n", "Saving slicer 2 for patient 0000292963 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292963/slicer_25_2.png\n", "Saving slicer 3 for patient 0000292963 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292963/slicer_20_3.png\n", "Saving slicer 4 for patient 0000292963 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292963/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000292963.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263274/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263274/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263274/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263274/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263274/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263274/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263274/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263274/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [15, 17, 18, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [15, 17, 18, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000263274 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263274/slicer_17_1.png\n", "Saving slicer 2 for patient 0000263274 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263274/slicer_18_2.png\n", "Saving slicer 3 for patient 0000263274 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263274/slicer_17_3.png\n", "Saving slicer 4 for patient 0000263274 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263274/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000263274.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280577/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280577/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280577/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280577/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280577/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280577/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280577/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280577/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [16, 17, 18, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 17, 18, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280577 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280577/slicer_27_1.png\n", "Saving slicer 2 for patient 0000280577 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280577/slicer_16_2.png\n", "Saving slicer 3 for patient 0000280577 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280577/slicer_27_3.png\n", "Saving slicer 4 for patient 0000280577 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280577/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000280577.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000313917/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000313917/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000313917/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000313917/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000313917/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000313917/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000313917/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000313917/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000313917 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000313917/slicer_26_1.png\n", "Saving slicer 2 for patient 0000313917 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000313917/slicer_16_2.png\n", "Saving slicer 3 for patient 0000313917 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000313917/slicer_26_3.png\n", "Saving slicer 4 for patient 0000313917 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000313917/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000313917.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274804/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274804/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274804/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274804/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274804/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274804/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274804/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274804/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [4, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [4, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274804 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274804/slicer_25_1.png\n", "Saving slicer 2 for patient 0000274804 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274804/slicer_18_2.png\n", "Saving slicer 3 for patient 0000274804 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274804/slicer_25_3.png\n", "Saving slicer 4 for patient 0000274804 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274804/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000274804.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281731/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281731/mask_all.nii.gz\n", "Image shape: (40, 384, 384), Mask shape: (40, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281731/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281731/mask_all.nii.gz\n", "Image shape: (40, 384, 384), Mask shape: (40, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281731/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281731/mask_all.nii.gz\n", "Image shape: (40, 384, 384), Mask shape: (40, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281731/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281731/mask_all.nii.gz\n", "Image shape: (40, 384, 384), Mask shape: (40, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35]\n", "Before T2 ROI slices: [5, 6, 7, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "Slice layer [14] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000281731 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281731/slicer_14_1.png\n", "Saving slicer 2 for patient 0000281731 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281731/slicer_21_2.png\n", "Saving slicer 3 for patient 0000281731 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281731/slicer_14_3.png\n", "Saving slicer 4 for patient 0000281731 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281731/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000281731.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000301050/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000301050/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000301050/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000301050/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301050/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301050/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301050/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301050/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [16, 17, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 17, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000301050 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301050/slicer_21_1.png\n", "Saving slicer 2 for patient 0000301050 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301050/slicer_16_2.png\n", "Saving slicer 3 for patient 0000301050 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301050/slicer_21_3.png\n", "Saving slicer 4 for patient 0000301050 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301050/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000301050.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000258169/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000258169/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000258169/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000258169/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258169/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258169/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258169/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258169/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258169 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258169/slicer_16_1.png\n", "Saving slicer 2 for patient 0000258169 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258169/slicer_20_2.png\n", "Saving slicer 3 for patient 0000258169 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258169/slicer_16_3.png\n", "Saving slicer 4 for patient 0000258169 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258169/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000258169.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000236626/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000236626/mask_all.nii.gz\n", "Image shape: (48, 512, 512), Mask shape: (48, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000236626/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000236626/mask_all.nii.gz\n", "Image shape: (48, 512, 512), Mask shape: (48, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000236626/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000236626/mask_all.nii.gz\n", "Image shape: (48, 512, 512), Mask shape: (48, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000236626/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000236626/mask_all.nii.gz\n", "Image shape: (48, 512, 512), Mask shape: (48, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [15, 16, 17, 18, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [15, 16, 17, 18, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000236626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000236626/slicer_13_1.png\n", "Saving slicer 2 for patient 0000236626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000236626/slicer_29_2.png\n", "Saving slicer 3 for patient 0000236626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000236626/slicer_13_3.png\n", "Saving slicer 4 for patient 0000236626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000236626/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000236626.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000305471/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000305471/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000305471/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000305471/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305471/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305471/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305471/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305471/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [9, 10, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [18, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [18, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 9\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "Slice layer [9] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000305471 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305471/slicer_9_1.png\n", "Saving slicer 2 for patient 0000305471 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305471/slicer_27_2.png\n", "Saving slicer 3 for patient 0000305471 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305471/slicer_9_3.png\n", "Saving slicer 4 for patient 0000305471 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305471/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000305471.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257340/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257340/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257340/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257340/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257340/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257340/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257340/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257340/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [1, 2, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [1, 2, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 8\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000257340 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257340/slicer_14_1.png\n", "Saving slicer 2 for patient 0000257340 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257340/slicer_8_2.png\n", "Saving slicer 3 for patient 0000257340 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257340/slicer_14_3.png\n", "Saving slicer 4 for patient 0000257340 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257340/slicer_8_4.png\n", "Successfully saved 4 slices for patient 0000257340.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270151/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270151/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270151/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270151/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270151/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270151/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270151/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270151/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [25] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000270151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270151/slicer_28_1.png\n", "Saving slicer 2 for patient 0000270151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270151/slicer_25_2.png\n", "Saving slicer 3 for patient 0000270151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270151/slicer_28_3.png\n", "Saving slicer 4 for patient 0000270151 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270151/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000270151.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000291905/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000291905/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000291905/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000291905/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291905/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291905/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291905/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291905/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [18, 19, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [18, 19, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 32\n", "Random T2 slicer index chosen: 31\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000291905 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291905/slicer_32_1.png\n", "Saving slicer 2 for patient 0000291905 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291905/slicer_31_2.png\n", "Saving slicer 3 for patient 0000291905 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291905/slicer_32_3.png\n", "Saving slicer 4 for patient 0000291905 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291905/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000291905.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279328/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279328/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279328/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279328/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279328/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279328/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279328/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279328/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [14, 16, 17, 18, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [14, 16, 17, 18, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279328 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279328/slicer_30_1.png\n", "Saving slicer 2 for patient 0000279328 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279328/slicer_15_2.png\n", "Saving slicer 3 for patient 0000279328 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279328/slicer_30_3.png\n", "Saving slicer 4 for patient 0000279328 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279328/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000279328.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280378/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280378/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280378/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280378/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280378/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280378/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280378/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280378/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 12\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280378 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280378/slicer_12_1.png\n", "Saving slicer 2 for patient 0000280378 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280378/slicer_15_2.png\n", "Saving slicer 3 for patient 0000280378 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280378/slicer_12_3.png\n", "Saving slicer 4 for patient 0000280378 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280378/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000280378.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000307960/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000307960/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000307960/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000307960/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307960/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307960/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307960/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307960/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 18, 19, 20, 21, 22, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [14, 15, 18, 19, 20, 21, 22, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [19, 20, 21, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [19, 20, 21, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000307960 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307960/slicer_15_1.png\n", "Saving slicer 2 for patient 0000307960 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307960/slicer_27_2.png\n", "Saving slicer 3 for patient 0000307960 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307960/slicer_15_3.png\n", "Saving slicer 4 for patient 0000307960 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307960/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000307960.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1077175/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1077175/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1077175/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1077175/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1077175/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1077175/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1077175/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1077175/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [14] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1077175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1077175/slicer_16_1.png\n", "Saving slicer 2 for patient 00C1077175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1077175/slicer_14_2.png\n", "Saving slicer 3 for patient 00C1077175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1077175/slicer_16_3.png\n", "Saving slicer 4 for patient 00C1077175 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1077175/slicer_14_4.png\n", "Successfully saved 4 slices for patient 00C1077175.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298791/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298791/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298791/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298791/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298791/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298791/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298791/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298791/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298791 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298791/slicer_29_1.png\n", "Saving slicer 2 for patient 0000298791 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298791/slicer_29_2.png\n", "Saving slicer 3 for patient 0000298791 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298791/slicer_29_3.png\n", "Saving slicer 4 for patient 0000298791 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298791/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000298791.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000310001/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000310001/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000310001/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000310001/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310001/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310001/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310001/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310001/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 26, 27, 28, 29]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000310001 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310001/slicer_21_1.png\n", "Saving slicer 2 for patient 0000310001 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310001/slicer_16_2.png\n", "Saving slicer 3 for patient 0000310001 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310001/slicer_21_3.png\n", "Saving slicer 4 for patient 0000310001 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310001/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000310001.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000240215/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000240215/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000240215/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000240215/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240215/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240215/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240215/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240215/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23]\n", "After T1 ROI slices: [10, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [10, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000240215 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240215/slicer_19_1.png\n", "Saving slicer 2 for patient 0000240215 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240215/slicer_20_2.png\n", "Saving slicer 3 for patient 0000240215 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240215/slicer_19_3.png\n", "Saving slicer 4 for patient 0000240215 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240215/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000240215.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302170/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302170/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302170/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302170/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302170/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302170/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302170/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302170/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [7, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [14, 15, 16, 17, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [14, 15, 16, 17, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 11\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [11] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302170 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302170/slicer_25_1.png\n", "Saving slicer 2 for patient 0000302170 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302170/slicer_11_2.png\n", "Saving slicer 3 for patient 0000302170 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302170/slicer_25_3.png\n", "Saving slicer 4 for patient 0000302170 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302170/slicer_11_4.png\n", "Successfully saved 4 slices for patient 0000302170.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274657/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274657/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274657/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274657/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274657/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274657/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274657/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274657/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [11, 12, 13, 14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274657 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274657/slicer_13_1.png\n", "Saving slicer 2 for patient 0000274657 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274657/slicer_21_2.png\n", "Saving slicer 3 for patient 0000274657 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274657/slicer_13_3.png\n", "Saving slicer 4 for patient 0000274657 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274657/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000274657.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000275048/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000275048/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000275048/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000275048/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275048/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275048/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275048/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275048/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275048 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000275048/slicer_13_1.png\n", "Saving slicer 2 for patient 0000275048 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000275048/slicer_21_2.png\n", "Saving slicer 3 for patient 0000275048 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000275048/slicer_13_3.png\n", "Saving slicer 4 for patient 0000275048 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000275048/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000275048.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295145/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295145/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295145/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295145/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295145/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295145/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295145/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295145/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 5, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [3, 4, 5, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 10\n", "Random T2 slicer index chosen: 31\n", "A total of 1 slices were extracted!\n", "Slice layer [10] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295145 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295145/slicer_10_1.png\n", "Saving slicer 2 for patient 0000295145 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295145/slicer_31_2.png\n", "Saving slicer 3 for patient 0000295145 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295145/slicer_10_3.png\n", "Saving slicer 4 for patient 0000295145 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295145/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000295145.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300510/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300510/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300510/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300510/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300510/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300510/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300510/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300510/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 19, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [18, 19, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [23] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000300510 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300510/slicer_25_1.png\n", "Saving slicer 2 for patient 0000300510 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300510/slicer_23_2.png\n", "Saving slicer 3 for patient 0000300510 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300510/slicer_25_3.png\n", "Saving slicer 4 for patient 0000300510 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300510/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000300510.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248056/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248056/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248056/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248056/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248056/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248056/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248056/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248056/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [16, 17, 18, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [16, 17, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [16, 17, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 30\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248056 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248056/slicer_25_1.png\n", "Saving slicer 2 for patient 0000248056 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248056/slicer_30_2.png\n", "Saving slicer 3 for patient 0000248056 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248056/slicer_25_3.png\n", "Saving slicer 4 for patient 0000248056 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248056/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000248056.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300607/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300607/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300607/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300607/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300607/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300607/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300607/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300607/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [8, 9, 10, 11, 12, 15, 16, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [8, 9, 10, 11, 12, 15, 16, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 11\n", "Random T2 slicer index chosen: 11\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000300607 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300607/slicer_11_1.png\n", "Saving slicer 2 for patient 0000300607 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300607/slicer_11_2.png\n", "Saving slicer 3 for patient 0000300607 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300607/slicer_11_3.png\n", "Saving slicer 4 for patient 0000300607 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300607/slicer_11_4.png\n", "Successfully saved 4 slices for patient 0000300607.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000239187/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000239187/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000239187/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000239187/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239187/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239187/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239187/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239187/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000239187 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239187/slicer_23_1.png\n", "Saving slicer 2 for patient 0000239187 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239187/slicer_26_2.png\n", "Saving slicer 3 for patient 0000239187 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239187/slicer_23_3.png\n", "Saving slicer 4 for patient 0000239187 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239187/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000239187.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293011/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293011/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293011/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293011/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293011/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293011/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293011/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293011/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293011 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293011/slicer_20_1.png\n", "Saving slicer 2 for patient 0000293011 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293011/slicer_15_2.png\n", "Saving slicer 3 for patient 0000293011 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293011/slicer_20_3.png\n", "Saving slicer 4 for patient 0000293011 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293011/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000293011.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281783/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281783/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281783/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281783/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281783/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281783/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281783/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281783/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [7, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 11\n", "Random T2 slicer index chosen: 11\n", "A total of 1 slices were extracted!\n", "Slice layer [11] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [11] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000281783 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281783/slicer_11_1.png\n", "Saving slicer 2 for patient 0000281783 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281783/slicer_11_2.png\n", "Saving slicer 3 for patient 0000281783 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281783/slicer_11_3.png\n", "Saving slicer 4 for patient 0000281783 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281783/slicer_11_4.png\n", "Successfully saved 4 slices for patient 0000281783.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1124207/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1124207/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1124207/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1124207/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1124207/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1124207/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1124207/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1124207/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [11, 12, 13, 14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [11, 12, 13, 14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1124207 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1124207/slicer_20_1.png\n", "Saving slicer 2 for patient 00C1124207 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1124207/slicer_16_2.png\n", "Saving slicer 3 for patient 00C1124207 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1124207/slicer_20_3.png\n", "Saving slicer 4 for patient 00C1124207 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1124207/slicer_16_4.png\n", "Successfully saved 4 slices for patient 00C1124207.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000296950/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000296950/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000296950/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000296950/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296950/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296950/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296950/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296950/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 9\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000296950 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296950/slicer_9_1.png\n", "Saving slicer 2 for patient 0000296950 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296950/slicer_14_2.png\n", "Saving slicer 3 for patient 0000296950 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296950/slicer_9_3.png\n", "Saving slicer 4 for patient 0000296950 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296950/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000296950.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266533/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266533/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266533/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266533/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266533/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266533/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266533/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266533/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [0, 1, 2, 3, 6, 8, 9, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [0, 1, 2, 3, 6, 8, 9, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [0, 9, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [0, 9, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 9\n", "Random T2 slicer index chosen: 3\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [3] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266533 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266533/slicer_9_1.png\n", "Saving slicer 2 for patient 0000266533 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266533/slicer_3_2.png\n", "Saving slicer 3 for patient 0000266533 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266533/slicer_9_3.png\n", "Saving slicer 4 for patient 0000266533 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266533/slicer_3_4.png\n", "Successfully saved 4 slices for patient 0000266533.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1108216/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1108216/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1108216/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1108216/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1108216/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1108216/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1108216/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1108216/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [14, 15, 16, 17, 24, 25, 26, 27]\n", "After T2 ROI slices: [14, 15, 16, 17, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1108216 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1108216/slicer_18_1.png\n", "Saving slicer 2 for patient 00C1108216 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1108216/slicer_26_2.png\n", "Saving slicer 3 for patient 00C1108216 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1108216/slicer_18_3.png\n", "Saving slicer 4 for patient 00C1108216 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1108216/slicer_26_4.png\n", "Successfully saved 4 slices for patient 00C1108216.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283456/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283456/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283456/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283456/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283456/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283456/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283456/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283456/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283456 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283456/slicer_29_1.png\n", "Saving slicer 2 for patient 0000283456 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283456/slicer_16_2.png\n", "Saving slicer 3 for patient 0000283456 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283456/slicer_29_3.png\n", "Saving slicer 4 for patient 0000283456 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283456/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000283456.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000264485/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000264485/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000264485/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000264485/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264485/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264485/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264485/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264485/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [12, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [12, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000264485 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264485/slicer_26_1.png\n", "Saving slicer 2 for patient 0000264485 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264485/slicer_19_2.png\n", "Saving slicer 3 for patient 0000264485 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264485/slicer_26_3.png\n", "Saving slicer 4 for patient 0000264485 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264485/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000264485.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270426/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270426/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270426/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270426/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270426/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270426/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270426/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270426/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 11\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "Slice layer [11] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000270426 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270426/slicer_11_1.png\n", "Saving slicer 2 for patient 0000270426 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270426/slicer_20_2.png\n", "Saving slicer 3 for patient 0000270426 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270426/slicer_11_3.png\n", "Saving slicer 4 for patient 0000270426 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270426/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000270426.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284028/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284028/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284028/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284028/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284028/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284028/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284028/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284028/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284028 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284028/slicer_14_1.png\n", "Saving slicer 2 for patient 0000284028 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284028/slicer_14_2.png\n", "Saving slicer 3 for patient 0000284028 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284028/slicer_14_3.png\n", "Saving slicer 4 for patient 0000284028 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284028/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000284028.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000269153/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000269153/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000269153/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000269153/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269153/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269153/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269153/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269153/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [14, 17, 18, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [14, 17, 18, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000269153 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269153/slicer_20_1.png\n", "Saving slicer 2 for patient 0000269153 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269153/slicer_26_2.png\n", "Saving slicer 3 for patient 0000269153 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269153/slicer_20_3.png\n", "Saving slicer 4 for patient 0000269153 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269153/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000269153.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000264786/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000264786/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000264786/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000264786/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264786/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264786/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264786/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264786/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [14, 15, 19, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [14, 15, 19, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000264786 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264786/slicer_22_1.png\n", "Saving slicer 2 for patient 0000264786 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264786/slicer_28_2.png\n", "Saving slicer 3 for patient 0000264786 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264786/slicer_22_3.png\n", "Saving slicer 4 for patient 0000264786 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264786/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000264786.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000252857/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000252857/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000252857/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000252857/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252857/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252857/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252857/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252857/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31]\n", "Before T2 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31]\n", "After T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 3\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [3] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000252857 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000252857/slicer_18_1.png\n", "Saving slicer 2 for patient 0000252857 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000252857/slicer_3_2.png\n", "Saving slicer 3 for patient 0000252857 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000252857/slicer_18_3.png\n", "Saving slicer 4 for patient 0000252857 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000252857/slicer_3_4.png\n", "Successfully saved 4 slices for patient 0000252857.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295401/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295401/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295401/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295401/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295401/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295401/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295401/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295401/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [6, 11, 14, 15, 16, 17, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [6, 11, 14, 15, 16, 17, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 8\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "Slice layer [8] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295401 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295401/slicer_8_1.png\n", "Saving slicer 2 for patient 0000295401 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295401/slicer_20_2.png\n", "Saving slicer 3 for patient 0000295401 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295401/slicer_8_3.png\n", "Saving slicer 4 for patient 0000295401 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295401/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000295401.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284366/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284366/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284366/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284366/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284366/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284366/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284366/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284366/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284366 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284366/slicer_17_1.png\n", "Saving slicer 2 for patient 0000284366 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284366/slicer_14_2.png\n", "Saving slicer 3 for patient 0000284366 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284366/slicer_17_3.png\n", "Saving slicer 4 for patient 0000284366 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284366/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000284366.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287584/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287584/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287584/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287584/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287584/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287584/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287584/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287584/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [26, 27, 28, 29]\n", "After T2 ROI slices: [26, 27, 28, 29]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "Slice layer [25] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287584 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287584/slicer_25_1.png\n", "Saving slicer 2 for patient 0000287584 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287584/slicer_18_2.png\n", "Saving slicer 3 for patient 0000287584 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287584/slicer_25_3.png\n", "Saving slicer 4 for patient 0000287584 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287584/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000287584.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293412/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293412/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293412/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293412/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293412/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293412/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293412/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293412/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293412 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293412/slicer_30_1.png\n", "Saving slicer 2 for patient 0000293412 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293412/slicer_26_2.png\n", "Saving slicer 3 for patient 0000293412 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293412/slicer_30_3.png\n", "Saving slicer 4 for patient 0000293412 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293412/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000293412.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274243/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274243/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274243/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274243/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274243/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274243/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274243/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274243/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 31\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "Slice layer [31] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274243 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274243/slicer_31_1.png\n", "Saving slicer 2 for patient 0000274243 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274243/slicer_24_2.png\n", "Saving slicer 3 for patient 0000274243 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274243/slicer_31_3.png\n", "Saving slicer 4 for patient 0000274243 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274243/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000274243.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000312655/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000312655/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000312655/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000312655/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312655/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312655/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312655/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312655/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 14, 15, 16, 17, 18, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [8, 14, 15, 16, 17, 18, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000312655 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312655/slicer_30_1.png\n", "Saving slicer 2 for patient 0000312655 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312655/slicer_29_2.png\n", "Saving slicer 3 for patient 0000312655 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312655/slicer_30_3.png\n", "Saving slicer 4 for patient 0000312655 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312655/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000312655.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000262365/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000262365/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000262365/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000262365/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262365/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262365/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262365/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262365/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000262365 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262365/slicer_18_1.png\n", "Saving slicer 2 for patient 0000262365 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262365/slicer_16_2.png\n", "Saving slicer 3 for patient 0000262365 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262365/slicer_18_3.png\n", "Saving slicer 4 for patient 0000262365 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262365/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000262365.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000239997/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000239997/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000239997/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000239997/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239997/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239997/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239997/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239997/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000239997 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239997/slicer_23_1.png\n", "Saving slicer 2 for patient 0000239997 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239997/slicer_19_2.png\n", "Saving slicer 3 for patient 0000239997 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239997/slicer_23_3.png\n", "Saving slicer 4 for patient 0000239997 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239997/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000239997.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287808/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287808/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287808/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287808/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287808/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287808/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287808/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287808/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 12\n", "Random T2 slicer index chosen: 9\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287808 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287808/slicer_12_1.png\n", "Saving slicer 2 for patient 0000287808 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287808/slicer_9_2.png\n", "Saving slicer 3 for patient 0000287808 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287808/slicer_12_3.png\n", "Saving slicer 4 for patient 0000287808 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287808/slicer_9_4.png\n", "Successfully saved 4 slices for patient 0000287808.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259788/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259788/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259788/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259788/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259788/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259788/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259788/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259788/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [15, 16, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [15, 16, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000259788 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259788/slicer_19_1.png\n", "Saving slicer 2 for patient 0000259788 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259788/slicer_18_2.png\n", "Saving slicer 3 for patient 0000259788 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259788/slicer_19_3.png\n", "Saving slicer 4 for patient 0000259788 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259788/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000259788.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000294061/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000294061/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000294061/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000294061/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294061/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294061/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294061/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294061/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 10\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [10] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000294061 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294061/slicer_15_1.png\n", "Saving slicer 2 for patient 0000294061 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294061/slicer_10_2.png\n", "Saving slicer 3 for patient 0000294061 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294061/slicer_15_3.png\n", "Saving slicer 4 for patient 0000294061 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294061/slicer_10_4.png\n", "Successfully saved 4 slices for patient 0000294061.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000305731/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000305731/mask_all.nii.gz\n", "Image shape: (54, 512, 512), Mask shape: (54, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000305731/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000305731/mask_all.nii.gz\n", "Image shape: (54, 512, 512), Mask shape: (54, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305731/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305731/mask_all.nii.gz\n", "Image shape: (54, 512, 512), Mask shape: (54, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305731/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305731/mask_all.nii.gz\n", "Image shape: (54, 512, 512), Mask shape: (54, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [25, 26, 27, 28, 29, 30, 31, 32, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49]\n", "Before T2 ROI slices: [25, 26, 27, 28, 29, 30, 31, 32, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49]\n", "After T1 ROI slices: [26, 28, 29, 30, 31, 39, 40, 41, 42, 43, 44, 45]\n", "After T2 ROI slices: [26, 28, 29, 30, 31, 39, 40, 41, 42, 43, 44, 45]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 41\n", "A total of 1 slices were extracted!\n", "Slice layer [27] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000305731 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305731/slicer_27_1.png\n", "Saving slicer 2 for patient 0000305731 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305731/slicer_41_2.png\n", "Saving slicer 3 for patient 0000305731 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305731/slicer_27_3.png\n", "Saving slicer 4 for patient 0000305731 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305731/slicer_41_4.png\n", "Successfully saved 4 slices for patient 0000305731.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000309579/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000309579/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000309579/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000309579/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309579/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309579/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309579/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309579/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [19, 20, 21, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [19, 20, 21, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000309579 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309579/slicer_29_1.png\n", "Saving slicer 2 for patient 0000309579 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309579/slicer_27_2.png\n", "Saving slicer 3 for patient 0000309579 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309579/slicer_29_3.png\n", "Saving slicer 4 for patient 0000309579 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309579/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000309579.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000258314/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000258314/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000258314/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000258314/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258314/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258314/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258314/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258314/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 31\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "Slice layer [31] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258314 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258314/slicer_31_1.png\n", "Saving slicer 2 for patient 0000258314 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258314/slicer_20_2.png\n", "Saving slicer 3 for patient 0000258314 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258314/slicer_31_3.png\n", "Saving slicer 4 for patient 0000258314 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258314/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000258314.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249335/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249335/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249335/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249335/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249335/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249335/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249335/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249335/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [10, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "After T2 ROI slices: [10, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 9\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [9] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249335 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249335/slicer_23_1.png\n", "Saving slicer 2 for patient 0000249335 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249335/slicer_9_2.png\n", "Saving slicer 3 for patient 0000249335 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249335/slicer_23_3.png\n", "Saving slicer 4 for patient 0000249335 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249335/slicer_9_4.png\n", "Successfully saved 4 slices for patient 0000249335.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000240391/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000240391/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000240391/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000240391/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240391/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240391/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240391/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240391/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 4\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "Slice layer [4] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000240391 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240391/slicer_4_1.png\n", "Saving slicer 2 for patient 0000240391 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240391/slicer_18_2.png\n", "Saving slicer 3 for patient 0000240391 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240391/slicer_4_3.png\n", "Saving slicer 4 for patient 0000240391 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240391/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000240391.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249348/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249348/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249348/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249348/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249348/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249348/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249348/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249348/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [16, 17, 20, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [16, 17, 20, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 11\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [11] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249348 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249348/slicer_23_1.png\n", "Saving slicer 2 for patient 0000249348 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249348/slicer_11_2.png\n", "Saving slicer 3 for patient 0000249348 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249348/slicer_23_3.png\n", "Saving slicer 4 for patient 0000249348 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249348/slicer_11_4.png\n", "Successfully saved 4 slices for patient 0000249348.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000271203/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000271203/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000271203/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000271203/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271203/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271203/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271203/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271203/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "After T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000271203 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271203/slicer_18_1.png\n", "Saving slicer 2 for patient 0000271203 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271203/slicer_18_2.png\n", "Saving slicer 3 for patient 0000271203 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271203/slicer_18_3.png\n", "Saving slicer 4 for patient 0000271203 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271203/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000271203.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000262626/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000262626/mask_all.nii.gz\n", "Image shape: (32, 342, 384), Mask shape: (32, 342, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000262626/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000262626/mask_all.nii.gz\n", "Image shape: (32, 342, 384), Mask shape: (32, 342, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262626/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262626/mask_all.nii.gz\n", "Image shape: (32, 342, 384), Mask shape: (32, 342, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262626/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262626/mask_all.nii.gz\n", "Image shape: (32, 342, 384), Mask shape: (32, 342, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 19, 20, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [15, 16, 17, 19, 20, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [15, 19, 20, 21, 22, 23]\n", "After T2 ROI slices: [15, 19, 20, 21, 22, 23]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000262626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262626/slicer_15_1.png\n", "Saving slicer 2 for patient 0000262626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262626/slicer_17_2.png\n", "Saving slicer 3 for patient 0000262626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262626/slicer_15_3.png\n", "Saving slicer 4 for patient 0000262626 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262626/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000262626.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256092/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256092/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256092/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256092/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256092/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256092/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256092/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256092/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [9, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000256092 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256092/slicer_20_1.png\n", "Saving slicer 2 for patient 0000256092 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256092/slicer_20_2.png\n", "Saving slicer 3 for patient 0000256092 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256092/slicer_20_3.png\n", "Saving slicer 4 for patient 0000256092 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256092/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000256092.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000258813/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000258813/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000258813/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000258813/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258813/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258813/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258813/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258813/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [11, 12, 13, 14, 18, 19, 21, 22, 23, 24]\n", "After T2 ROI slices: [11, 12, 13, 14, 18, 19, 21, 22, 23, 24]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258813 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258813/slicer_22_1.png\n", "Saving slicer 2 for patient 0000258813 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258813/slicer_20_2.png\n", "Saving slicer 3 for patient 0000258813 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258813/slicer_22_3.png\n", "Saving slicer 4 for patient 0000258813 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258813/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000258813.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286054/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286054/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286054/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286054/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286054/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286054/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286054/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286054/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [15, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [15, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [15, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000286054 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286054/slicer_19_1.png\n", "Saving slicer 2 for patient 0000286054 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286054/slicer_29_2.png\n", "Saving slicer 3 for patient 0000286054 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286054/slicer_19_3.png\n", "Saving slicer 4 for patient 0000286054 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286054/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000286054.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000251369/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000251369/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000251369/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000251369/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251369/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251369/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251369/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251369/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 19, 20, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [18, 19, 20, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [24, 25, 26, 27]\n", "After T2 ROI slices: [24, 25, 26, 27]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000251369 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000251369/slicer_18_1.png\n", "Saving slicer 2 for patient 0000251369 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000251369/slicer_29_2.png\n", "Saving slicer 3 for patient 0000251369 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000251369/slicer_18_3.png\n", "Saving slicer 4 for patient 0000251369 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000251369/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000251369.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000314103/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000314103/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000314103/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000314103/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000314103/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000314103/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000314103/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000314103/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [5, 6, 7, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 26, 27, 28]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 26, 27, 28]\n", "Random T1 slicer index chosen: 7\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "Slice layer [7] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000314103 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000314103/slicer_7_1.png\n", "Saving slicer 2 for patient 0000314103 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000314103/slicer_28_2.png\n", "Saving slicer 3 for patient 0000314103 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000314103/slicer_7_3.png\n", "Saving slicer 4 for patient 0000314103 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000314103/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000314103.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257612/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257612/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257612/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257612/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257612/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257612/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257612/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257612/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [15, 16, 17, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [15, 16, 17, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000257612 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257612/slicer_20_1.png\n", "Saving slicer 2 for patient 0000257612 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257612/slicer_19_2.png\n", "Saving slicer 3 for patient 0000257612 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257612/slicer_20_3.png\n", "Saving slicer 4 for patient 0000257612 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257612/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000257612.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256547/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256547/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256547/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256547/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256547/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256547/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256547/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256547/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [17, 19, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [17, 19, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000256547 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256547/slicer_19_1.png\n", "Saving slicer 2 for patient 0000256547 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256547/slicer_23_2.png\n", "Saving slicer 3 for patient 0000256547 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256547/slicer_19_3.png\n", "Saving slicer 4 for patient 0000256547 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256547/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000256547.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257440/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257440/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257440/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257440/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257440/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257440/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257440/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257440/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 35]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 35]\n", "After T1 ROI slices: [19, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [19, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 35\n", "A total of 1 slices were extracted!\n", "Slice layer [30] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [35] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000257440 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257440/slicer_30_1.png\n", "Saving slicer 2 for patient 0000257440 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257440/slicer_35_2.png\n", "Saving slicer 3 for patient 0000257440 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257440/slicer_30_3.png\n", "Saving slicer 4 for patient 0000257440 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257440/slicer_35_4.png\n", "Successfully saved 4 slices for patient 0000257440.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000309401/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000309401/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000309401/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000309401/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309401/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309401/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309401/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309401/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000309401 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309401/slicer_22_1.png\n", "Saving slicer 2 for patient 0000309401 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309401/slicer_19_2.png\n", "Saving slicer 3 for patient 0000309401 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309401/slicer_22_3.png\n", "Saving slicer 4 for patient 0000309401 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309401/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000309401.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000285184/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000285184/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000285184/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000285184/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285184/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285184/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285184/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285184/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 32\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000285184 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285184/slicer_29_1.png\n", "Saving slicer 2 for patient 0000285184 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285184/slicer_32_2.png\n", "Saving slicer 3 for patient 0000285184 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285184/slicer_29_3.png\n", "Saving slicer 4 for patient 0000285184 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285184/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000285184.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272802/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272802/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272802/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272802/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272802/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272802/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272802/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272802/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [18, 19, 20, 21, 22, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [18, 19, 20, 21, 22, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [24] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000272802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272802/slicer_28_1.png\n", "Saving slicer 2 for patient 0000272802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272802/slicer_24_2.png\n", "Saving slicer 3 for patient 0000272802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272802/slicer_28_3.png\n", "Saving slicer 4 for patient 0000272802 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272802/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000272802.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256126/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256126/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256126/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256126/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256126/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256126/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256126/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256126/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [15, 16, 17, 18, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [15, 16, 17, 18, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000256126 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256126/slicer_16_1.png\n", "Saving slicer 2 for patient 0000256126 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256126/slicer_23_2.png\n", "Saving slicer 3 for patient 0000256126 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256126/slicer_16_3.png\n", "Saving slicer 4 for patient 0000256126 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256126/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000256126.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000246555/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000246555/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000246555/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000246555/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246555/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246555/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246555/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246555/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [3, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [26] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000246555 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246555/slicer_15_1.png\n", "Saving slicer 2 for patient 0000246555 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246555/slicer_26_2.png\n", "Saving slicer 3 for patient 0000246555 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246555/slicer_15_3.png\n", "Saving slicer 4 for patient 0000246555 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246555/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000246555.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1083891/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1083891/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1083891/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1083891/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1083891/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1083891/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1083891/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1083891/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [17, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [17, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1083891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1083891/slicer_17_1.png\n", "Saving slicer 2 for patient 00C1083891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1083891/slicer_17_2.png\n", "Saving slicer 3 for patient 00C1083891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1083891/slicer_17_3.png\n", "Saving slicer 4 for patient 00C1083891 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1083891/slicer_17_4.png\n", "Successfully saved 4 slices for patient 00C1083891.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000273184/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000273184/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000273184/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000273184/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273184/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273184/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273184/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273184/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [7, 8, 9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 12\n", "Random T2 slicer index chosen: 10\n", "A total of 1 slices were extracted!\n", "Slice layer [12] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [10] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273184 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273184/slicer_12_1.png\n", "Saving slicer 2 for patient 0000273184 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273184/slicer_10_2.png\n", "Saving slicer 3 for patient 0000273184 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273184/slicer_12_3.png\n", "Saving slicer 4 for patient 0000273184 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273184/slicer_10_4.png\n", "Successfully saved 4 slices for patient 0000273184.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000240518/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000240518/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000240518/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000240518/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240518/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240518/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240518/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240518/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000240518 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240518/slicer_23_1.png\n", "Saving slicer 2 for patient 0000240518 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240518/slicer_21_2.png\n", "Saving slicer 3 for patient 0000240518 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240518/slicer_23_3.png\n", "Saving slicer 4 for patient 0000240518 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240518/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000240518.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000258701/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000258701/mask_all.nii.gz\n", "Image shape: (36, 448, 448), Mask shape: (36, 448, 448)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000258701/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000258701/mask_all.nii.gz\n", "Image shape: (36, 448, 448), Mask shape: (36, 448, 448)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258701/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258701/mask_all.nii.gz\n", "Image shape: (36, 448, 448), Mask shape: (36, 448, 448)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258701/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258701/mask_all.nii.gz\n", "Image shape: (36, 448, 448), Mask shape: (36, 448, 448)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [6, 11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [6, 11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 10\n", "Random T2 slicer index chosen: 30\n", "A total of 1 slices were extracted!\n", "Slice layer [10] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [30] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258701 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258701/slicer_10_1.png\n", "Saving slicer 2 for patient 0000258701 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258701/slicer_30_2.png\n", "Saving slicer 3 for patient 0000258701 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258701/slicer_10_3.png\n", "Saving slicer 4 for patient 0000258701 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258701/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000258701.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000242866/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000242866/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000242866/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000242866/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242866/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242866/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242866/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242866/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000242866 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000242866/slicer_24_1.png\n", "Saving slicer 2 for patient 0000242866 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000242866/slicer_18_2.png\n", "Saving slicer 3 for patient 0000242866 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000242866/slicer_24_3.png\n", "Saving slicer 4 for patient 0000242866 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000242866/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000242866.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1082591/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1082591/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1082591/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1082591/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1082591/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1082591/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1082591/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1082591/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 11\n", "Random T2 slicer index chosen: 12\n", "A total of 1 slices were extracted!\n", "Slice layer [11] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [12] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1082591 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1082591/slicer_11_1.png\n", "Saving slicer 2 for patient 00C1082591 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1082591/slicer_12_2.png\n", "Saving slicer 3 for patient 00C1082591 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1082591/slicer_11_3.png\n", "Saving slicer 4 for patient 00C1082591 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1082591/slicer_12_4.png\n", "Successfully saved 4 slices for patient 00C1082591.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000237082/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000237082/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000237082/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000237082/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237082/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237082/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237082/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237082/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237082 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000237082/slicer_26_1.png\n", "Saving slicer 2 for patient 0000237082 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000237082/slicer_25_2.png\n", "Saving slicer 3 for patient 0000237082 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000237082/slicer_26_3.png\n", "Saving slicer 4 for patient 0000237082 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000237082/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000237082.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000246374/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000246374/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000246374/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000246374/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246374/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246374/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246374/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246374/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000246374 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246374/slicer_26_1.png\n", "Saving slicer 2 for patient 0000246374 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246374/slicer_15_2.png\n", "Saving slicer 3 for patient 0000246374 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246374/slicer_26_3.png\n", "Saving slicer 4 for patient 0000246374 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246374/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000246374.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1093728/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1093728/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1093728/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1093728/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1093728/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1093728/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1093728/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1093728/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 11\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [11] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1093728 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1093728/slicer_22_1.png\n", "Saving slicer 2 for patient 00C1093728 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1093728/slicer_11_2.png\n", "Saving slicer 3 for patient 00C1093728 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1093728/slicer_22_3.png\n", "Saving slicer 4 for patient 00C1093728 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1093728/slicer_11_4.png\n", "Successfully saved 4 slices for patient 00C1093728.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000289470/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000289470/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000289470/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000289470/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289470/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289470/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289470/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289470/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [20, 21, 22, 23, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [20, 21, 22, 23, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000289470 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289470/slicer_20_1.png\n", "Saving slicer 2 for patient 0000289470 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289470/slicer_23_2.png\n", "Saving slicer 3 for patient 0000289470 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289470/slicer_20_3.png\n", "Saving slicer 4 for patient 0000289470 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289470/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000289470.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000288957/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000288957/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000288957/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000288957/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288957/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288957/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288957/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288957/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000288957 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288957/slicer_13_1.png\n", "Saving slicer 2 for patient 0000288957 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288957/slicer_16_2.png\n", "Saving slicer 3 for patient 0000288957 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288957/slicer_13_3.png\n", "Saving slicer 4 for patient 0000288957 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288957/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000288957.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000299118/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000299118/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000299118/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000299118/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299118/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299118/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299118/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299118/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 19, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [17, 18, 19, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [19, 20, 21, 22, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [19, 20, 21, 22, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000299118 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299118/slicer_18_1.png\n", "Saving slicer 2 for patient 0000299118 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299118/slicer_19_2.png\n", "Saving slicer 3 for patient 0000299118 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299118/slicer_18_3.png\n", "Saving slicer 4 for patient 0000299118 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299118/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000299118.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280099/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280099/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280099/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280099/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280099/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280099/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280099/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280099/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 7\n", "Random T2 slicer index chosen: 10\n", "A total of 1 slices were extracted!\n", "Slice layer [7] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280099/slicer_7_1.png\n", "Saving slicer 2 for patient 0000280099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280099/slicer_10_2.png\n", "Saving slicer 3 for patient 0000280099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280099/slicer_7_3.png\n", "Saving slicer 4 for patient 0000280099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280099/slicer_10_4.png\n", "Successfully saved 4 slices for patient 0000280099.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290416/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290416/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290416/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290416/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290416/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290416/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290416/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290416/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [5, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [5, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000290416 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290416/slicer_16_1.png\n", "Saving slicer 2 for patient 0000290416 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290416/slicer_14_2.png\n", "Saving slicer 3 for patient 0000290416 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290416/slicer_16_3.png\n", "Saving slicer 4 for patient 0000290416 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290416/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000290416.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000314285/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000314285/mask_all.nii.gz\n", "Image shape: (36, 336, 336), Mask shape: (36, 336, 336)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000314285/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000314285/mask_all.nii.gz\n", "Image shape: (36, 336, 336), Mask shape: (36, 336, 336)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000314285/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000314285/mask_all.nii.gz\n", "Image shape: (36, 336, 336), Mask shape: (36, 336, 336)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000314285/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000314285/mask_all.nii.gz\n", "Image shape: (36, 336, 336), Mask shape: (36, 336, 336)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [12, 13, 16, 17, 18, 19, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [12, 13, 16, 17, 18, 19, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 9\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [9] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000314285 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000314285/slicer_21_1.png\n", "Saving slicer 2 for patient 0000314285 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000314285/slicer_9_2.png\n", "Saving slicer 3 for patient 0000314285 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000314285/slicer_21_3.png\n", "Saving slicer 4 for patient 0000314285 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000314285/slicer_9_4.png\n", "Successfully saved 4 slices for patient 0000314285.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000239994/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000239994/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000239994/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000239994/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239994/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239994/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239994/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239994/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [18, 19, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [18, 19, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000239994 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239994/slicer_23_1.png\n", "Saving slicer 2 for patient 0000239994 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239994/slicer_27_2.png\n", "Saving slicer 3 for patient 0000239994 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239994/slicer_23_3.png\n", "Saving slicer 4 for patient 0000239994 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239994/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000239994.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000240179/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000240179/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000240179/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000240179/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240179/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240179/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240179/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240179/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [12, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000240179 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240179/slicer_24_1.png\n", "Saving slicer 2 for patient 0000240179 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240179/slicer_25_2.png\n", "Saving slicer 3 for patient 0000240179 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240179/slicer_24_3.png\n", "Saving slicer 4 for patient 0000240179 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240179/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000240179.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290114/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290114/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290114/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290114/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290114/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290114/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290114/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290114/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000290114 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290114/slicer_30_1.png\n", "Saving slicer 2 for patient 0000290114 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290114/slicer_29_2.png\n", "Saving slicer 3 for patient 0000290114 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290114/slicer_30_3.png\n", "Saving slicer 4 for patient 0000290114 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290114/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000290114.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287916/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287916/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287916/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287916/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287916/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287916/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287916/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287916/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [10, 11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [14] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287916/slicer_29_1.png\n", "Saving slicer 2 for patient 0000287916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287916/slicer_14_2.png\n", "Saving slicer 3 for patient 0000287916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287916/slicer_29_3.png\n", "Saving slicer 4 for patient 0000287916 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287916/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000287916.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000241524/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000241524/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000241524/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000241524/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241524/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241524/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241524/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241524/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000241524 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000241524/slicer_14_1.png\n", "Saving slicer 2 for patient 0000241524 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000241524/slicer_22_2.png\n", "Saving slicer 3 for patient 0000241524 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000241524/slicer_14_3.png\n", "Saving slicer 4 for patient 0000241524 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000241524/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000241524.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000234790/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000234790/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000234790/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000234790/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000234790/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000234790/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000234790/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000234790/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [16, 17, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 17, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000234790/slicer_28_1.png\n", "Saving slicer 2 for patient 0000234790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000234790/slicer_23_2.png\n", "Saving slicer 3 for patient 0000234790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000234790/slicer_28_3.png\n", "Saving slicer 4 for patient 0000234790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000234790/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000234790.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000299841/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000299841/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000299841/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000299841/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299841/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299841/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299841/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299841/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [20, 22, 23, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [20, 22, 23, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000299841 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299841/slicer_27_1.png\n", "Saving slicer 2 for patient 0000299841 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299841/slicer_19_2.png\n", "Saving slicer 3 for patient 0000299841 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299841/slicer_27_3.png\n", "Saving slicer 4 for patient 0000299841 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299841/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000299841.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000278318/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000278318/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000278318/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000278318/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278318/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278318/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278318/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278318/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000278318 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278318/slicer_19_1.png\n", "Saving slicer 2 for patient 0000278318 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278318/slicer_29_2.png\n", "Saving slicer 3 for patient 0000278318 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278318/slicer_19_3.png\n", "Saving slicer 4 for patient 0000278318 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278318/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000278318.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279495/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279495/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279495/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279495/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279495/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279495/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279495/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279495/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279495 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279495/slicer_25_1.png\n", "Saving slicer 2 for patient 0000279495 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279495/slicer_28_2.png\n", "Saving slicer 3 for patient 0000279495 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279495/slicer_25_3.png\n", "Saving slicer 4 for patient 0000279495 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279495/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000279495.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279360/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279360/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279360/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279360/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279360/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279360/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279360/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279360/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 9\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [9] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279360 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279360/slicer_20_1.png\n", "Saving slicer 2 for patient 0000279360 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279360/slicer_9_2.png\n", "Saving slicer 3 for patient 0000279360 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279360/slicer_20_3.png\n", "Saving slicer 4 for patient 0000279360 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279360/slicer_9_4.png\n", "Successfully saved 4 slices for patient 0000279360.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270245/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270245/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270245/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270245/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270245/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270245/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270245/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270245/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000270245 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270245/slicer_23_1.png\n", "Saving slicer 2 for patient 0000270245 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270245/slicer_15_2.png\n", "Saving slicer 3 for patient 0000270245 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270245/slicer_23_3.png\n", "Saving slicer 4 for patient 0000270245 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270245/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000270245.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000250004/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000250004/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000250004/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000250004/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250004/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250004/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250004/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250004/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "Slice layer [30] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000250004 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000250004/slicer_30_1.png\n", "Saving slicer 2 for patient 0000250004 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000250004/slicer_28_2.png\n", "Saving slicer 3 for patient 0000250004 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000250004/slicer_30_3.png\n", "Saving slicer 4 for patient 0000250004 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000250004/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000250004.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254076/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254076/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254076/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254076/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254076/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254076/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254076/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254076/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [6, 7, 8, 9, 11, 12, 13, 15, 16, 17, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [6, 7, 8, 9, 11, 12, 13, 15, 16, 17, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 10\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "Slice layer [10] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000254076 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254076/slicer_10_1.png\n", "Saving slicer 2 for patient 0000254076 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254076/slicer_23_2.png\n", "Saving slicer 3 for patient 0000254076 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254076/slicer_10_3.png\n", "Saving slicer 4 for patient 0000254076 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254076/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000254076.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267289/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267289/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267289/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267289/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267289/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267289/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267289/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267289/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 19, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [17, 19, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 31\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267289 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267289/slicer_31_1.png\n", "Saving slicer 2 for patient 0000267289 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267289/slicer_29_2.png\n", "Saving slicer 3 for patient 0000267289 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267289/slicer_31_3.png\n", "Saving slicer 4 for patient 0000267289 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267289/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000267289.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297982/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297982/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297982/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297982/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297982/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297982/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297982/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297982/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297982/slicer_23_1.png\n", "Saving slicer 2 for patient 0000297982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297982/slicer_25_2.png\n", "Saving slicer 3 for patient 0000297982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297982/slicer_23_3.png\n", "Saving slicer 4 for patient 0000297982 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297982/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000297982.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000312527/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000312527/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000312527/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000312527/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312527/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312527/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312527/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312527/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [10, 11, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [10, 11, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000312527 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312527/slicer_17_1.png\n", "Saving slicer 2 for patient 0000312527 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312527/slicer_28_2.png\n", "Saving slicer 3 for patient 0000312527 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312527/slicer_17_3.png\n", "Saving slicer 4 for patient 0000312527 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312527/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000312527.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000265075/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000265075/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000265075/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000265075/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265075/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265075/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265075/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265075/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265075 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000265075/slicer_19_1.png\n", "Saving slicer 2 for patient 0000265075 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000265075/slicer_23_2.png\n", "Saving slicer 3 for patient 0000265075 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000265075/slicer_19_3.png\n", "Saving slicer 4 for patient 0000265075 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000265075/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000265075.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268504/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268504/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268504/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268504/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268504/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268504/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268504/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268504/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [6, 7, 8, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [6, 7, 8, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 11\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000268504 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268504/slicer_20_1.png\n", "Saving slicer 2 for patient 0000268504 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268504/slicer_11_2.png\n", "Saving slicer 3 for patient 0000268504 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268504/slicer_20_3.png\n", "Saving slicer 4 for patient 0000268504 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268504/slicer_11_4.png\n", "Successfully saved 4 slices for patient 0000268504.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279068/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279068/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279068/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279068/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279068/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279068/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279068/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279068/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279068 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279068/slicer_25_1.png\n", "Saving slicer 2 for patient 0000279068 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279068/slicer_23_2.png\n", "Saving slicer 3 for patient 0000279068 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279068/slicer_25_3.png\n", "Saving slicer 4 for patient 0000279068 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279068/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000279068.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290790/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290790/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290790/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290790/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290790/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290790/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290790/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290790/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 17, 18, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [12, 13, 17, 18, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [13, 17, 18, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [13, 17, 18, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000290790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290790/slicer_18_1.png\n", "Saving slicer 2 for patient 0000290790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290790/slicer_28_2.png\n", "Saving slicer 3 for patient 0000290790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290790/slicer_18_3.png\n", "Saving slicer 4 for patient 0000290790 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290790/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000290790.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302233/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302233/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302233/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302233/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302233/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302233/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302233/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302233/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 19, 20, 21, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [18, 19, 20, 21, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [18, 19, 20, 26, 27, 28, 29]\n", "After T2 ROI slices: [18, 19, 20, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [25] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302233 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302233/slicer_18_1.png\n", "Saving slicer 2 for patient 0000302233 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302233/slicer_25_2.png\n", "Saving slicer 3 for patient 0000302233 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302233/slicer_18_3.png\n", "Saving slicer 4 for patient 0000302233 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302233/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000302233.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000244658/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000244658/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000244658/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000244658/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244658/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244658/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244658/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244658/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 11\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [11] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000244658 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244658/slicer_18_1.png\n", "Saving slicer 2 for patient 0000244658 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244658/slicer_11_2.png\n", "Saving slicer 3 for patient 0000244658 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244658/slicer_18_3.png\n", "Saving slicer 4 for patient 0000244658 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244658/slicer_11_4.png\n", "Successfully saved 4 slices for patient 0000244658.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274223/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274223/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274223/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274223/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274223/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274223/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274223/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274223/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 9\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [9] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274223 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274223/slicer_26_1.png\n", "Saving slicer 2 for patient 0000274223 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274223/slicer_9_2.png\n", "Saving slicer 3 for patient 0000274223 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274223/slicer_26_3.png\n", "Saving slicer 4 for patient 0000274223 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274223/slicer_9_4.png\n", "Successfully saved 4 slices for patient 0000274223.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259046/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259046/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259046/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259046/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259046/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259046/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259046/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259046/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000259046 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259046/slicer_17_1.png\n", "Saving slicer 2 for patient 0000259046 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259046/slicer_22_2.png\n", "Saving slicer 3 for patient 0000259046 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259046/slicer_17_3.png\n", "Saving slicer 4 for patient 0000259046 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259046/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000259046.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284194/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284194/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284194/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284194/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284194/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284194/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284194/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284194/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [16, 17, 18, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [16, 17, 18, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284194 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284194/slicer_15_1.png\n", "Saving slicer 2 for patient 0000284194 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284194/slicer_15_2.png\n", "Saving slicer 3 for patient 0000284194 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284194/slicer_15_3.png\n", "Saving slicer 4 for patient 0000284194 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284194/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000284194.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000247697/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000247697/mask_all.nii.gz\n", "Image shape: (28, 384, 384), Mask shape: (28, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000247697/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000247697/mask_all.nii.gz\n", "Image shape: (28, 384, 384), Mask shape: (28, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247697/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247697/mask_all.nii.gz\n", "Image shape: (28, 384, 384), Mask shape: (28, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247697/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247697/mask_all.nii.gz\n", "Image shape: (28, 384, 384), Mask shape: (28, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21]\n", "After T1 ROI slices: [3, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20]\n", "After T2 ROI slices: [3, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20]\n", "Random T1 slicer index chosen: 12\n", "Random T2 slicer index chosen: 6\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [6] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000247697 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247697/slicer_12_1.png\n", "Saving slicer 2 for patient 0000247697 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247697/slicer_6_2.png\n", "Saving slicer 3 for patient 0000247697 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247697/slicer_12_3.png\n", "Saving slicer 4 for patient 0000247697 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247697/slicer_6_4.png\n", "Successfully saved 4 slices for patient 0000247697.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000271298/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000271298/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000271298/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000271298/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271298/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271298/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271298/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271298/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 17, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [14, 15, 17, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [22, 23, 24, 25, 26]\n", "After T2 ROI slices: [22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000271298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271298/slicer_21_1.png\n", "Saving slicer 2 for patient 0000271298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271298/slicer_24_2.png\n", "Saving slicer 3 for patient 0000271298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271298/slicer_21_3.png\n", "Saving slicer 4 for patient 0000271298 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271298/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000271298.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000253353/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000253353/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000253353/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000253353/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253353/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253353/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253353/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253353/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [2, 3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 8\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000253353 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000253353/slicer_8_1.png\n", "Saving slicer 2 for patient 0000253353 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000253353/slicer_27_2.png\n", "Saving slicer 3 for patient 0000253353 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000253353/slicer_8_3.png\n", "Saving slicer 4 for patient 0000253353 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000253353/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000253353.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297782/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297782/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297782/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297782/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297782/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297782/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297782/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297782/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [16, 17, 18, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [16, 17, 18, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297782 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297782/slicer_29_1.png\n", "Saving slicer 2 for patient 0000297782 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297782/slicer_15_2.png\n", "Saving slicer 3 for patient 0000297782 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297782/slicer_29_3.png\n", "Saving slicer 4 for patient 0000297782 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297782/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000297782.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297986/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297986/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297986/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297986/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297986/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297986/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297986/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297986/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297986 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297986/slicer_17_1.png\n", "Saving slicer 2 for patient 0000297986 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297986/slicer_21_2.png\n", "Saving slicer 3 for patient 0000297986 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297986/slicer_17_3.png\n", "Saving slicer 4 for patient 0000297986 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297986/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000297986.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000246867/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000246867/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000246867/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000246867/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246867/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246867/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246867/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246867/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000246867 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246867/slicer_17_1.png\n", "Saving slicer 2 for patient 0000246867 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246867/slicer_15_2.png\n", "Saving slicer 3 for patient 0000246867 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246867/slicer_17_3.png\n", "Saving slicer 4 for patient 0000246867 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246867/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000246867.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000277230/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000277230/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000277230/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000277230/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277230/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277230/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277230/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000277230/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 9\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [9] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000277230 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000277230/slicer_16_1.png\n", "Saving slicer 2 for patient 0000277230 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000277230/slicer_9_2.png\n", "Saving slicer 3 for patient 0000277230 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000277230/slicer_16_3.png\n", "Saving slicer 4 for patient 0000277230 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000277230/slicer_9_4.png\n", "Successfully saved 4 slices for patient 0000277230.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000309386/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000309386/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000309386/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000309386/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309386/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309386/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309386/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309386/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [14, 17, 18, 19, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [14, 17, 18, 19, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [24] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000309386 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309386/slicer_29_1.png\n", "Saving slicer 2 for patient 0000309386 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309386/slicer_24_2.png\n", "Saving slicer 3 for patient 0000309386 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309386/slicer_29_3.png\n", "Saving slicer 4 for patient 0000309386 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309386/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000309386.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000276921/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000276921/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000276921/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000276921/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276921/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276921/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276921/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276921/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [15, 16, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [15, 16, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000276921 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276921/slicer_23_1.png\n", "Saving slicer 2 for patient 0000276921 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276921/slicer_28_2.png\n", "Saving slicer 3 for patient 0000276921 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276921/slicer_23_3.png\n", "Saving slicer 4 for patient 0000276921 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276921/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000276921.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000304789/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000304789/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000304789/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000304789/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304789/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304789/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304789/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304789/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36]\n", "Before T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 34\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304789 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000304789/slicer_17_1.png\n", "Saving slicer 2 for patient 0000304789 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000304789/slicer_34_2.png\n", "Saving slicer 3 for patient 0000304789 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000304789/slicer_17_3.png\n", "Saving slicer 4 for patient 0000304789 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000304789/slicer_34_4.png\n", "Successfully saved 4 slices for patient 0000304789.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000288633/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000288633/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000288633/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000288633/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288633/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288633/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288633/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288633/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [16, 17, 18, 19, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [18, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [18, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 31\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [31] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000288633 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288633/slicer_19_1.png\n", "Saving slicer 2 for patient 0000288633 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288633/slicer_31_2.png\n", "Saving slicer 3 for patient 0000288633 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288633/slicer_19_3.png\n", "Saving slicer 4 for patient 0000288633 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288633/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000288633.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000253523/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000253523/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000253523/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000253523/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253523/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253523/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253523/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253523/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [18, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [18, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000253523 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000253523/slicer_20_1.png\n", "Saving slicer 2 for patient 0000253523 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000253523/slicer_27_2.png\n", "Saving slicer 3 for patient 0000253523 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000253523/slicer_20_3.png\n", "Saving slicer 4 for patient 0000253523 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000253523/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000253523.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000305778/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000305778/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000305778/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000305778/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305778/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305778/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305778/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305778/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [18, 19, 20, 26, 27, 28]\n", "After T2 ROI slices: [18, 19, 20, 26, 27, 28]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [23] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000305778 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305778/slicer_18_1.png\n", "Saving slicer 2 for patient 0000305778 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305778/slicer_23_2.png\n", "Saving slicer 3 for patient 0000305778 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305778/slicer_18_3.png\n", "Saving slicer 4 for patient 0000305778 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305778/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000305778.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000312261/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000312261/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000312261/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000312261/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312261/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312261/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312261/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312261/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 10, 11, 12, 13, 14, 15, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [7, 8, 10, 11, 12, 13, 14, 15, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [12, 13, 14, 18, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [12, 13, 14, 18, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 10\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "Slice layer [10] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000312261 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312261/slicer_10_1.png\n", "Saving slicer 2 for patient 0000312261 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312261/slicer_21_2.png\n", "Saving slicer 3 for patient 0000312261 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312261/slicer_10_3.png\n", "Saving slicer 4 for patient 0000312261 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312261/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000312261.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256088/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256088/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256088/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256088/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256088/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256088/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256088/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256088/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 12\n", "Random T2 slicer index chosen: 11\n", "A total of 1 slices were extracted!\n", "Slice layer [12] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [11] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000256088 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256088/slicer_12_1.png\n", "Saving slicer 2 for patient 0000256088 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256088/slicer_11_2.png\n", "Saving slicer 3 for patient 0000256088 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256088/slicer_12_3.png\n", "Saving slicer 4 for patient 0000256088 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256088/slicer_11_4.png\n", "Successfully saved 4 slices for patient 0000256088.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281455/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281455/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281455/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281455/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281455/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281455/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281455/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281455/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [20, 21, 22, 23, 29, 30, 31, 32]\n", "After T2 ROI slices: [20, 21, 22, 23, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "Slice layer [27] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000281455 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281455/slicer_27_1.png\n", "Saving slicer 2 for patient 0000281455 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281455/slicer_29_2.png\n", "Saving slicer 3 for patient 0000281455 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281455/slicer_27_3.png\n", "Saving slicer 4 for patient 0000281455 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281455/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000281455.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267563/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267563/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267563/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267563/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267563/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267563/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267563/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267563/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [14, 15, 16, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [14, 15, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [14, 15, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267563 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267563/slicer_28_1.png\n", "Saving slicer 2 for patient 0000267563 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267563/slicer_23_2.png\n", "Saving slicer 3 for patient 0000267563 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267563/slicer_28_3.png\n", "Saving slicer 4 for patient 0000267563 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267563/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000267563.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300902/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300902/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300902/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300902/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300902/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300902/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300902/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300902/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "Before T2 ROI slices: [16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "After T1 ROI slices: [19, 20, 21, 27, 28, 29, 30, 31, 32, 33, 34]\n", "After T2 ROI slices: [19, 20, 21, 27, 28, 29, 30, 31, 32, 33, 34]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [26] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000300902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300902/slicer_29_1.png\n", "Saving slicer 2 for patient 0000300902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300902/slicer_26_2.png\n", "Saving slicer 3 for patient 0000300902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300902/slicer_29_3.png\n", "Saving slicer 4 for patient 0000300902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300902/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000300902.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259997/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259997/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259997/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259997/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259997/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259997/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259997/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259997/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [17, 18, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [17, 18, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000259997 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259997/slicer_17_1.png\n", "Saving slicer 2 for patient 0000259997 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259997/slicer_25_2.png\n", "Saving slicer 3 for patient 0000259997 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259997/slicer_17_3.png\n", "Saving slicer 4 for patient 0000259997 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259997/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000259997.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000306117/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000306117/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000306117/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000306117/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306117/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306117/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306117/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306117/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000306117 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306117/slicer_29_1.png\n", "Saving slicer 2 for patient 0000306117 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306117/slicer_15_2.png\n", "Saving slicer 3 for patient 0000306117 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306117/slicer_29_3.png\n", "Saving slicer 4 for patient 0000306117 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306117/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000306117.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292338/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292338/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292338/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292338/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292338/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292338/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292338/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292338/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [19, 20, 21, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [19, 20, 21, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000292338 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292338/slicer_17_1.png\n", "Saving slicer 2 for patient 0000292338 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292338/slicer_29_2.png\n", "Saving slicer 3 for patient 0000292338 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292338/slicer_17_3.png\n", "Saving slicer 4 for patient 0000292338 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292338/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000292338.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302568/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302568/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302568/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302568/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302568/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302568/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302568/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302568/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 8\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302568 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302568/slicer_8_1.png\n", "Saving slicer 2 for patient 0000302568 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302568/slicer_18_2.png\n", "Saving slicer 3 for patient 0000302568 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302568/slicer_8_3.png\n", "Saving slicer 4 for patient 0000302568 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302568/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000302568.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263086/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263086/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263086/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263086/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263086/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263086/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263086/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263086/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 12, 13, 14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [4, 5, 6, 12, 13, 14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [5, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [5, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 5\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000263086 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263086/slicer_17_1.png\n", "Saving slicer 2 for patient 0000263086 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263086/slicer_5_2.png\n", "Saving slicer 3 for patient 0000263086 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263086/slicer_17_3.png\n", "Saving slicer 4 for patient 0000263086 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263086/slicer_5_4.png\n", "Successfully saved 4 slices for patient 0000263086.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000260400/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000260400/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000260400/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000260400/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260400/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260400/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260400/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260400/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [16, 17, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 17, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 31\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "Slice layer [31] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000260400 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260400/slicer_31_1.png\n", "Saving slicer 2 for patient 0000260400 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260400/slicer_22_2.png\n", "Saving slicer 3 for patient 0000260400 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260400/slicer_31_3.png\n", "Saving slicer 4 for patient 0000260400 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260400/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000260400.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245190/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245190/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245190/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245190/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245190/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245190/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245190/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245190/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 7\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [7] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245190 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245190/slicer_19_1.png\n", "Saving slicer 2 for patient 0000245190 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245190/slicer_7_2.png\n", "Saving slicer 3 for patient 0000245190 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245190/slicer_19_3.png\n", "Saving slicer 4 for patient 0000245190 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245190/slicer_7_4.png\n", "Successfully saved 4 slices for patient 0000245190.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000299213/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000299213/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000299213/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000299213/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299213/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299213/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299213/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299213/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [17, 18, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [17, 18, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "Slice layer [28] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000299213 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299213/slicer_28_1.png\n", "Saving slicer 2 for patient 0000299213 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299213/slicer_18_2.png\n", "Saving slicer 3 for patient 0000299213 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299213/slicer_28_3.png\n", "Saving slicer 4 for patient 0000299213 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299213/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000299213.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295296/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295296/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295296/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295296/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295296/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295296/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295296/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295296/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295296 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295296/slicer_19_1.png\n", "Saving slicer 2 for patient 0000295296 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295296/slicer_17_2.png\n", "Saving slicer 3 for patient 0000295296 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295296/slicer_19_3.png\n", "Saving slicer 4 for patient 0000295296 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295296/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000295296.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270726/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270726/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270726/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270726/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270726/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270726/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270726/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270726/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [12, 13, 14, 15, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [12, 13, 14, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [12, 13, 14, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000270726 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270726/slicer_20_1.png\n", "Saving slicer 2 for patient 0000270726 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270726/slicer_14_2.png\n", "Saving slicer 3 for patient 0000270726 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270726/slicer_20_3.png\n", "Saving slicer 4 for patient 0000270726 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270726/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000270726.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292476/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292476/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292476/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292476/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292476/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292476/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292476/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292476/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000292476 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292476/slicer_20_1.png\n", "Saving slicer 2 for patient 0000292476 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292476/slicer_26_2.png\n", "Saving slicer 3 for patient 0000292476 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292476/slicer_20_3.png\n", "Saving slicer 4 for patient 0000292476 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292476/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000292476.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1068568/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1068568/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1068568/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1068568/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1068568/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1068568/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1068568/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1068568/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1068568 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1068568/slicer_20_1.png\n", "Saving slicer 2 for patient 00C1068568 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1068568/slicer_18_2.png\n", "Saving slicer 3 for patient 00C1068568 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1068568/slicer_20_3.png\n", "Saving slicer 4 for patient 00C1068568 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1068568/slicer_18_4.png\n", "Successfully saved 4 slices for patient 00C1068568.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287541/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287541/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287541/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287541/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287541/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287541/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287541/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287541/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287541 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287541/slicer_27_1.png\n", "Saving slicer 2 for patient 0000287541 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287541/slicer_19_2.png\n", "Saving slicer 3 for patient 0000287541 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287541/slicer_27_3.png\n", "Saving slicer 4 for patient 0000287541 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287541/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000287541.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000306346/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000306346/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000306346/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000306346/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306346/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306346/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306346/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306346/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000306346 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306346/slicer_17_1.png\n", "Saving slicer 2 for patient 0000306346 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306346/slicer_20_2.png\n", "Saving slicer 3 for patient 0000306346 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306346/slicer_17_3.png\n", "Saving slicer 4 for patient 0000306346 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306346/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000306346.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000241199/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000241199/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000241199/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000241199/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241199/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241199/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241199/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241199/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000241199 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000241199/slicer_26_1.png\n", "Saving slicer 2 for patient 0000241199 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000241199/slicer_27_2.png\n", "Saving slicer 3 for patient 0000241199 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000241199/slicer_26_3.png\n", "Saving slicer 4 for patient 0000241199 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000241199/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000241199.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268949/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268949/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268949/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268949/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268949/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268949/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268949/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268949/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 5, 10, 11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [3, 4, 5, 10, 11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [0, 2, 4, 12, 14, 15, 16, 17, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [0, 2, 4, 12, 14, 15, 16, 17, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 3\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "Slice layer [3] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000268949 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268949/slicer_3_1.png\n", "Saving slicer 2 for patient 0000268949 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268949/slicer_23_2.png\n", "Saving slicer 3 for patient 0000268949 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268949/slicer_3_3.png\n", "Saving slicer 4 for patient 0000268949 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268949/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000268949.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000308606/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000308606/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000308606/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000308606/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308606/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308606/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308606/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308606/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 19, 20, 21, 22, 23, 24, 27, 28, 29, 30, 31, 32, 33, 34, 35]\n", "Before T2 ROI slices: [16, 19, 20, 21, 22, 23, 24, 27, 28, 29, 30, 31, 32, 33, 34, 35]\n", "After T1 ROI slices: [23, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36]\n", "After T2 ROI slices: [23, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000308606 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308606/slicer_30_1.png\n", "Saving slicer 2 for patient 0000308606 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308606/slicer_29_2.png\n", "Saving slicer 3 for patient 0000308606 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308606/slicer_30_3.png\n", "Saving slicer 4 for patient 0000308606 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308606/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000308606.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290739/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290739/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290739/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290739/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290739/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290739/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290739/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290739/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [12, 15, 16, 17, 18, 19, 20, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [12, 15, 16, 17, 18, 19, 20, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000290739 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290739/slicer_17_1.png\n", "Saving slicer 2 for patient 0000290739 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290739/slicer_29_2.png\n", "Saving slicer 3 for patient 0000290739 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290739/slicer_17_3.png\n", "Saving slicer 4 for patient 0000290739 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290739/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000290739.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245767/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245767/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245767/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245767/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245767/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245767/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245767/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245767/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [4, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [12, 13, 15, 16, 17, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [12, 13, 15, 16, 17, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245767 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245767/slicer_29_1.png\n", "Saving slicer 2 for patient 0000245767 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245767/slicer_21_2.png\n", "Saving slicer 3 for patient 0000245767 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245767/slicer_29_3.png\n", "Saving slicer 4 for patient 0000245767 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245767/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000245767.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280503/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280503/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280503/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280503/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280503/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280503/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280503/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280503/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 4, 5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [2, 4, 5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [6, 7, 9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [6, 7, 9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 11\n", "Random T2 slicer index chosen: 6\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280503 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280503/slicer_11_1.png\n", "Saving slicer 2 for patient 0000280503 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280503/slicer_6_2.png\n", "Saving slicer 3 for patient 0000280503 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280503/slicer_11_3.png\n", "Saving slicer 4 for patient 0000280503 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280503/slicer_6_4.png\n", "Successfully saved 4 slices for patient 0000280503.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000260358/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000260358/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000260358/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000260358/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260358/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260358/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260358/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260358/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [8, 9, 10, 12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [14, 15, 16, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [14, 15, 16, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000260358 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260358/slicer_13_1.png\n", "Saving slicer 2 for patient 0000260358 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260358/slicer_14_2.png\n", "Saving slicer 3 for patient 0000260358 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260358/slicer_13_3.png\n", "Saving slicer 4 for patient 0000260358 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260358/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000260358.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000307685/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000307685/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000307685/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000307685/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307685/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307685/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307685/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307685/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 17, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [14, 17, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000307685 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307685/slicer_29_1.png\n", "Saving slicer 2 for patient 0000307685 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307685/slicer_17_2.png\n", "Saving slicer 3 for patient 0000307685 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307685/slicer_29_3.png\n", "Saving slicer 4 for patient 0000307685 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307685/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000307685.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279894/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279894/mask_all.nii.gz\n", "Image shape: (36, 288, 288), Mask shape: (36, 288, 288)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279894/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279894/mask_all.nii.gz\n", "Image shape: (36, 288, 288), Mask shape: (36, 288, 288)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279894/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279894/mask_all.nii.gz\n", "Image shape: (36, 288, 288), Mask shape: (36, 288, 288)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279894/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279894/mask_all.nii.gz\n", "Image shape: (36, 288, 288), Mask shape: (36, 288, 288)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [26, 27, 28, 29, 30]\n", "After T2 ROI slices: [26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 33\n", "A total of 1 slices were extracted!\n", "Slice layer [23] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [33] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279894 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279894/slicer_23_1.png\n", "Saving slicer 2 for patient 0000279894 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279894/slicer_33_2.png\n", "Saving slicer 3 for patient 0000279894 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279894/slicer_23_3.png\n", "Saving slicer 4 for patient 0000279894 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279894/slicer_33_4.png\n", "Successfully saved 4 slices for patient 0000279894.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279652/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279652/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279652/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279652/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279652/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279652/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279652/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279652/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [8, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 13\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279652 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279652/slicer_13_1.png\n", "Saving slicer 2 for patient 0000279652 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279652/slicer_13_2.png\n", "Saving slicer 3 for patient 0000279652 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279652/slicer_13_3.png\n", "Saving slicer 4 for patient 0000279652 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279652/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000279652.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000242267/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000242267/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000242267/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000242267/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242267/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242267/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242267/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242267/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 15, 16, 17, 18, 19, 20, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [5, 15, 16, 17, 18, 19, 20, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [16, 17, 18, 19, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 17, 18, 19, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 5\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "Slice layer [5] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000242267 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000242267/slicer_5_1.png\n", "Saving slicer 2 for patient 0000242267 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000242267/slicer_28_2.png\n", "Saving slicer 3 for patient 0000242267 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000242267/slicer_5_3.png\n", "Saving slicer 4 for patient 0000242267 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000242267/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000242267.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1075158/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1075158/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1075158/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1075158/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1075158/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1075158/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1075158/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1075158/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 20, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 20, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1075158 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1075158/slicer_16_1.png\n", "Saving slicer 2 for patient 00C1075158 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1075158/slicer_29_2.png\n", "Saving slicer 3 for patient 00C1075158 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1075158/slicer_16_3.png\n", "Saving slicer 4 for patient 00C1075158 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1075158/slicer_29_4.png\n", "Successfully saved 4 slices for patient 00C1075158.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297853/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297853/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297853/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297853/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297853/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297853/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297853/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297853/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [10, 12, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [10, 12, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 10\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297853 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297853/slicer_17_1.png\n", "Saving slicer 2 for patient 0000297853 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297853/slicer_10_2.png\n", "Saving slicer 3 for patient 0000297853 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297853/slicer_17_3.png\n", "Saving slicer 4 for patient 0000297853 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297853/slicer_10_4.png\n", "Successfully saved 4 slices for patient 0000297853.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297647/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297647/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297647/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297647/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297647/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297647/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297647/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297647/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 10\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [10] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297647 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297647/slicer_14_1.png\n", "Saving slicer 2 for patient 0000297647 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297647/slicer_10_2.png\n", "Saving slicer 3 for patient 0000297647 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297647/slicer_14_3.png\n", "Saving slicer 4 for patient 0000297647 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297647/slicer_10_4.png\n", "Successfully saved 4 slices for patient 0000297647.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282488/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282488/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282488/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282488/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282488/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282488/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282488/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282488/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282488 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282488/slicer_13_1.png\n", "Saving slicer 2 for patient 0000282488 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282488/slicer_20_2.png\n", "Saving slicer 3 for patient 0000282488 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282488/slicer_13_3.png\n", "Saving slicer 4 for patient 0000282488 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282488/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000282488.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000306588/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000306588/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000306588/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000306588/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306588/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306588/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306588/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306588/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [25, 26, 27, 28, 29]\n", "After T2 ROI slices: [25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000306588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306588/slicer_27_1.png\n", "Saving slicer 2 for patient 0000306588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306588/slicer_28_2.png\n", "Saving slicer 3 for patient 0000306588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306588/slicer_27_3.png\n", "Saving slicer 4 for patient 0000306588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306588/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000306588.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000288189/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000288189/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000288189/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000288189/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288189/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288189/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288189/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288189/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 10\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000288189 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288189/slicer_25_1.png\n", "Saving slicer 2 for patient 0000288189 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288189/slicer_10_2.png\n", "Saving slicer 3 for patient 0000288189 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288189/slicer_25_3.png\n", "Saving slicer 4 for patient 0000288189 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288189/slicer_10_4.png\n", "Successfully saved 4 slices for patient 0000288189.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000309484/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000309484/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000309484/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000309484/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309484/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309484/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309484/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309484/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 30\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [30] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000309484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309484/slicer_24_1.png\n", "Saving slicer 2 for patient 0000309484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309484/slicer_30_2.png\n", "Saving slicer 3 for patient 0000309484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309484/slicer_24_3.png\n", "Saving slicer 4 for patient 0000309484 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000309484/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000309484.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000261448/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000261448/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000261448/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000261448/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261448/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261448/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261448/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261448/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24]\n", "After T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000261448 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000261448/slicer_20_1.png\n", "Saving slicer 2 for patient 0000261448 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000261448/slicer_21_2.png\n", "Saving slicer 3 for patient 0000261448 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000261448/slicer_20_3.png\n", "Saving slicer 4 for patient 0000261448 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000261448/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000261448.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000291634/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000291634/mask_all.nii.gz\n", "Image shape: (36, 336, 336), Mask shape: (36, 336, 336)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000291634/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000291634/mask_all.nii.gz\n", "Image shape: (36, 336, 336), Mask shape: (36, 336, 336)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291634/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291634/mask_all.nii.gz\n", "Image shape: (36, 336, 336), Mask shape: (36, 336, 336)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291634/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291634/mask_all.nii.gz\n", "Image shape: (36, 336, 336), Mask shape: (36, 336, 336)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [13, 14, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000291634 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291634/slicer_27_1.png\n", "Saving slicer 2 for patient 0000291634 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291634/slicer_18_2.png\n", "Saving slicer 3 for patient 0000291634 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291634/slicer_27_3.png\n", "Saving slicer 4 for patient 0000291634 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291634/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000291634.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248264/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248264/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248264/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248264/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248264/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248264/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248264/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248264/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 12\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "Slice layer [12] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248264 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248264/slicer_12_1.png\n", "Saving slicer 2 for patient 0000248264 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248264/slicer_26_2.png\n", "Saving slicer 3 for patient 0000248264 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248264/slicer_12_3.png\n", "Saving slicer 4 for patient 0000248264 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248264/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000248264.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000312431/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000312431/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000312431/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000312431/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312431/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312431/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312431/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312431/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000312431 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312431/slicer_15_1.png\n", "Saving slicer 2 for patient 0000312431 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312431/slicer_14_2.png\n", "Saving slicer 3 for patient 0000312431 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312431/slicer_15_3.png\n", "Saving slicer 4 for patient 0000312431 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312431/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000312431.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000273914/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000273914/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000273914/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000273914/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273914/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273914/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273914/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273914/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [0, 1, 2, 3, 4, 10, 11, 12, 13, 14, 15, 16, 17, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [0, 1, 2, 3, 4, 10, 11, 12, 13, 14, 15, 16, 17, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273914 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273914/slicer_26_1.png\n", "Saving slicer 2 for patient 0000273914 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273914/slicer_17_2.png\n", "Saving slicer 3 for patient 0000273914 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273914/slicer_26_3.png\n", "Saving slicer 4 for patient 0000273914 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273914/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000273914.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266722/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266722/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266722/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266722/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266722/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266722/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266722/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266722/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 3\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "Slice layer [3] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266722 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266722/slicer_3_1.png\n", "Saving slicer 2 for patient 0000266722 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266722/slicer_27_2.png\n", "Saving slicer 3 for patient 0000266722 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266722/slicer_3_3.png\n", "Saving slicer 4 for patient 0000266722 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266722/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000266722.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259188/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259188/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259188/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259188/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259188/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259188/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259188/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259188/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000259188 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259188/slicer_18_1.png\n", "Saving slicer 2 for patient 0000259188 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259188/slicer_22_2.png\n", "Saving slicer 3 for patient 0000259188 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259188/slicer_18_3.png\n", "Saving slicer 4 for patient 0000259188 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259188/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000259188.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000306858/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000306858/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000306858/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000306858/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306858/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306858/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306858/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306858/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [21, 22, 26, 27, 28, 29]\n", "After T2 ROI slices: [21, 22, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000306858 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306858/slicer_28_1.png\n", "Saving slicer 2 for patient 0000306858 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306858/slicer_21_2.png\n", "Saving slicer 3 for patient 0000306858 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306858/slicer_28_3.png\n", "Saving slicer 4 for patient 0000306858 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306858/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000306858.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000246227/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000246227/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000246227/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000246227/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246227/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246227/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246227/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246227/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000246227 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246227/slicer_21_1.png\n", "Saving slicer 2 for patient 0000246227 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246227/slicer_15_2.png\n", "Saving slicer 3 for patient 0000246227 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246227/slicer_21_3.png\n", "Saving slicer 4 for patient 0000246227 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246227/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000246227.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302829/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302829/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302829/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302829/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302829/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302829/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302829/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302829/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302829 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302829/slicer_29_1.png\n", "Saving slicer 2 for patient 0000302829 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302829/slicer_18_2.png\n", "Saving slicer 3 for patient 0000302829 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302829/slicer_29_3.png\n", "Saving slicer 4 for patient 0000302829 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302829/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000302829.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000250257/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000250257/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000250257/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000250257/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250257/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250257/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250257/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250257/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [15, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [15, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000250257 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000250257/slicer_19_1.png\n", "Saving slicer 2 for patient 0000250257 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000250257/slicer_28_2.png\n", "Saving slicer 3 for patient 0000250257 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000250257/slicer_19_3.png\n", "Saving slicer 4 for patient 0000250257 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000250257/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000250257.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000299103/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000299103/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000299103/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000299103/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299103/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299103/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299103/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299103/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [8, 11, 12, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [8, 11, 12, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 3\n", "Random T2 slicer index chosen: 2\n", "A total of 1 slices were extracted!\n", "Slice layer [3] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [2] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000299103 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299103/slicer_3_1.png\n", "Saving slicer 2 for patient 0000299103 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299103/slicer_2_2.png\n", "Saving slicer 3 for patient 0000299103 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299103/slicer_3_3.png\n", "Saving slicer 4 for patient 0000299103 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299103/slicer_2_4.png\n", "Successfully saved 4 slices for patient 0000299103.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293508/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293508/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293508/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293508/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293508/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293508/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293508/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293508/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [4, 5, 6, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 10\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "Slice layer [10] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293508 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293508/slicer_10_1.png\n", "Saving slicer 2 for patient 0000293508 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293508/slicer_25_2.png\n", "Saving slicer 3 for patient 0000293508 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293508/slicer_10_3.png\n", "Saving slicer 4 for patient 0000293508 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293508/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000293508.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259762/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259762/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259762/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259762/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259762/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259762/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259762/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259762/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [4, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [21, 22, 23]\n", "After T2 ROI slices: [21, 22, 23]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000259762 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259762/slicer_16_1.png\n", "Saving slicer 2 for patient 0000259762 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259762/slicer_21_2.png\n", "Saving slicer 3 for patient 0000259762 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259762/slicer_16_3.png\n", "Saving slicer 4 for patient 0000259762 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259762/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000259762.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1110577/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1110577/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1110577/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1110577/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1110577/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1110577/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1110577/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1110577/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1110577 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1110577/slicer_18_1.png\n", "Saving slicer 2 for patient 00C1110577 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1110577/slicer_21_2.png\n", "Saving slicer 3 for patient 00C1110577 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1110577/slicer_18_3.png\n", "Saving slicer 4 for patient 00C1110577 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1110577/slicer_21_4.png\n", "Successfully saved 4 slices for patient 00C1110577.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1109541/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1109541/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1109541/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1109541/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1109541/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1109541/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1109541/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1109541/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [16, 17, 18, 19, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 17, 18, 19, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1109541 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1109541/slicer_25_1.png\n", "Saving slicer 2 for patient 00C1109541 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1109541/slicer_25_2.png\n", "Saving slicer 3 for patient 00C1109541 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1109541/slicer_25_3.png\n", "Saving slicer 4 for patient 00C1109541 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1109541/slicer_25_4.png\n", "Successfully saved 4 slices for patient 00C1109541.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000306322/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000306322/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000306322/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000306322/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306322/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306322/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306322/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306322/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 31\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000306322 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306322/slicer_22_1.png\n", "Saving slicer 2 for patient 0000306322 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306322/slicer_31_2.png\n", "Saving slicer 3 for patient 0000306322 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306322/slicer_22_3.png\n", "Saving slicer 4 for patient 0000306322 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306322/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000306322.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290839/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290839/mask_all.nii.gz\n", "Image shape: (36, 336, 336), Mask shape: (36, 336, 336)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290839/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290839/mask_all.nii.gz\n", "Image shape: (36, 336, 336), Mask shape: (36, 336, 336)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290839/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290839/mask_all.nii.gz\n", "Image shape: (36, 336, 336), Mask shape: (36, 336, 336)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290839/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290839/mask_all.nii.gz\n", "Image shape: (36, 336, 336), Mask shape: (36, 336, 336)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000290839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290839/slicer_16_1.png\n", "Saving slicer 2 for patient 0000290839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290839/slicer_26_2.png\n", "Saving slicer 3 for patient 0000290839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290839/slicer_16_3.png\n", "Saving slicer 4 for patient 0000290839 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290839/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000290839.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297048/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297048/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297048/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297048/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297048/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297048/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297048/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297048/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Random T1 slicer index chosen: 6\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "Slice layer [6] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297048 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297048/slicer_6_1.png\n", "Saving slicer 2 for patient 0000297048 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297048/slicer_15_2.png\n", "Saving slicer 3 for patient 0000297048 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297048/slicer_6_3.png\n", "Saving slicer 4 for patient 0000297048 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297048/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000297048.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286160/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286160/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286160/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286160/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286160/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286160/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286160/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286160/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000286160 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286160/slicer_16_1.png\n", "Saving slicer 2 for patient 0000286160 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286160/slicer_27_2.png\n", "Saving slicer 3 for patient 0000286160 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286160/slicer_16_3.png\n", "Saving slicer 4 for patient 0000286160 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286160/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000286160.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000299445/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000299445/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000299445/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000299445/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299445/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299445/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299445/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299445/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "Before T2 ROI slices: [20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "After T1 ROI slices: [26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 32\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000299445 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299445/slicer_32_1.png\n", "Saving slicer 2 for patient 0000299445 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299445/slicer_20_2.png\n", "Saving slicer 3 for patient 0000299445 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299445/slicer_32_3.png\n", "Saving slicer 4 for patient 0000299445 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299445/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000299445.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000235035/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000235035/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000235035/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000235035/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235035/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235035/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235035/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235035/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [6, 7, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [14, 15, 16, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [14, 15, 16, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000235035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235035/slicer_26_1.png\n", "Saving slicer 2 for patient 0000235035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235035/slicer_16_2.png\n", "Saving slicer 3 for patient 0000235035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235035/slicer_26_3.png\n", "Saving slicer 4 for patient 0000235035 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235035/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000235035.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248167/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248167/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248167/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248167/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248167/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248167/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248167/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248167/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248167/slicer_23_1.png\n", "Saving slicer 2 for patient 0000248167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248167/slicer_24_2.png\n", "Saving slicer 3 for patient 0000248167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248167/slicer_23_3.png\n", "Saving slicer 4 for patient 0000248167 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248167/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000248167.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000247970/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000247970/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000247970/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000247970/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247970/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247970/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247970/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247970/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 8\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "Slice layer [8] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000247970 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247970/slicer_8_1.png\n", "Saving slicer 2 for patient 0000247970 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247970/slicer_16_2.png\n", "Saving slicer 3 for patient 0000247970 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247970/slicer_8_3.png\n", "Saving slicer 4 for patient 0000247970 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247970/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000247970.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000276043/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000276043/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000276043/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000276043/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276043/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276043/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276043/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276043/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000276043 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276043/slicer_19_1.png\n", "Saving slicer 2 for patient 0000276043 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276043/slicer_27_2.png\n", "Saving slicer 3 for patient 0000276043 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276043/slicer_19_3.png\n", "Saving slicer 4 for patient 0000276043 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276043/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000276043.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254371/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254371/mask_all.nii.gz\n", "Image shape: (36, 448, 448), Mask shape: (36, 448, 448)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254371/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254371/mask_all.nii.gz\n", "Image shape: (36, 448, 448), Mask shape: (36, 448, 448)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254371/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254371/mask_all.nii.gz\n", "Image shape: (36, 448, 448), Mask shape: (36, 448, 448)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254371/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254371/mask_all.nii.gz\n", "Image shape: (36, 448, 448), Mask shape: (36, 448, 448)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [19, 20, 21, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [19, 20, 21, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000254371 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254371/slicer_21_1.png\n", "Saving slicer 2 for patient 0000254371 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254371/slicer_17_2.png\n", "Saving slicer 3 for patient 0000254371 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254371/slicer_21_3.png\n", "Saving slicer 4 for patient 0000254371 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254371/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000254371.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293115/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293115/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293115/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293115/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293115/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293115/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293115/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293115/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293115 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293115/slicer_13_1.png\n", "Saving slicer 2 for patient 0000293115 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293115/slicer_22_2.png\n", "Saving slicer 3 for patient 0000293115 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293115/slicer_13_3.png\n", "Saving slicer 4 for patient 0000293115 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293115/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000293115.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279379/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279379/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279379/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279379/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279379/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279379/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279379/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279379/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279379 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279379/slicer_26_1.png\n", "Saving slicer 2 for patient 0000279379 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279379/slicer_25_2.png\n", "Saving slicer 3 for patient 0000279379 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279379/slicer_26_3.png\n", "Saving slicer 4 for patient 0000279379 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279379/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000279379.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293434/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293434/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293434/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293434/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293434/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293434/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293434/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293434/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 23, 24, 25, 26]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "Slice layer [27] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293434 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293434/slicer_27_1.png\n", "Saving slicer 2 for patient 0000293434 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293434/slicer_26_2.png\n", "Saving slicer 3 for patient 0000293434 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293434/slicer_27_3.png\n", "Saving slicer 4 for patient 0000293434 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293434/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000293434.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000308229/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000308229/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000308229/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000308229/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308229/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308229/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308229/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308229/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [16, 19, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [16, 19, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000308229 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308229/slicer_17_1.png\n", "Saving slicer 2 for patient 0000308229 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308229/slicer_22_2.png\n", "Saving slicer 3 for patient 0000308229 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308229/slicer_17_3.png\n", "Saving slicer 4 for patient 0000308229 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308229/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000308229.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280364/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280364/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280364/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280364/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280364/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280364/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280364/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280364/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [14, 15, 16, 17, 19, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [14, 15, 16, 17, 19, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280364 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280364/slicer_18_1.png\n", "Saving slicer 2 for patient 0000280364 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280364/slicer_17_2.png\n", "Saving slicer 3 for patient 0000280364 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280364/slicer_18_3.png\n", "Saving slicer 4 for patient 0000280364 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280364/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000280364.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000314474/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000314474/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000314474/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000314474/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000314474/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000314474/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000314474/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000314474/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 10, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [3, 10, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [7, 9, 10, 13, 14, 15, 16, 17, 18, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [7, 9, 10, 13, 14, 15, 16, 17, 18, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 3\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "Slice layer [3] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000314474 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000314474/slicer_3_1.png\n", "Saving slicer 2 for patient 0000314474 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000314474/slicer_23_2.png\n", "Saving slicer 3 for patient 0000314474 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000314474/slicer_3_3.png\n", "Saving slicer 4 for patient 0000314474 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000314474/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000314474.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268880/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268880/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268880/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268880/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268880/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268880/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268880/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268880/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 23, 24, 25, 26]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 10\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [10] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000268880 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268880/slicer_14_1.png\n", "Saving slicer 2 for patient 0000268880 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268880/slicer_10_2.png\n", "Saving slicer 3 for patient 0000268880 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268880/slicer_14_3.png\n", "Saving slicer 4 for patient 0000268880 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268880/slicer_10_4.png\n", "Successfully saved 4 slices for patient 0000268880.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1129012/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1129012/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1129012/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1129012/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1129012/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1129012/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1129012/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1129012/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [15, 16, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [16, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [16, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1129012 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1129012/slicer_15_1.png\n", "Saving slicer 2 for patient 00C1129012 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1129012/slicer_15_2.png\n", "Saving slicer 3 for patient 00C1129012 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1129012/slicer_15_3.png\n", "Saving slicer 4 for patient 00C1129012 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1129012/slicer_15_4.png\n", "Successfully saved 4 slices for patient 00C1129012.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000230566/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000230566/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000230566/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000230566/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000230566/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000230566/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000230566/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000230566/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 8, 9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [5, 6, 7, 8, 9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [7, 8, 9, 13, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [7, 8, 9, 13, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000230566 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000230566/slicer_21_1.png\n", "Saving slicer 2 for patient 0000230566 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000230566/slicer_16_2.png\n", "Saving slicer 3 for patient 0000230566 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000230566/slicer_21_3.png\n", "Saving slicer 4 for patient 0000230566 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000230566/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000230566.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000306233/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000306233/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000306233/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000306233/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306233/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306233/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306233/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306233/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 31\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000306233 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306233/slicer_29_1.png\n", "Saving slicer 2 for patient 0000306233 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306233/slicer_31_2.png\n", "Saving slicer 3 for patient 0000306233 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306233/slicer_29_3.png\n", "Saving slicer 4 for patient 0000306233 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306233/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000306233.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263272/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263272/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263272/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263272/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263272/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263272/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263272/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263272/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [11, 12, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [16, 17, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [16, 17, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000263272 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263272/slicer_26_1.png\n", "Saving slicer 2 for patient 0000263272 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263272/slicer_29_2.png\n", "Saving slicer 3 for patient 0000263272 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263272/slicer_26_3.png\n", "Saving slicer 4 for patient 0000263272 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263272/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000263272.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000244868/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000244868/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000244868/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000244868/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244868/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244868/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244868/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244868/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [16, 17, 18, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 17, 18, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000244868 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244868/slicer_16_1.png\n", "Saving slicer 2 for patient 0000244868 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244868/slicer_28_2.png\n", "Saving slicer 3 for patient 0000244868 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244868/slicer_16_3.png\n", "Saving slicer 4 for patient 0000244868 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244868/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000244868.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255180/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255180/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255180/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255180/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255180/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255180/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255180/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255180/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [2, 3, 8, 9, 10, 12, 13, 14, 15, 16, 17, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [2, 3, 8, 9, 10, 12, 13, 14, 15, 16, 17, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 7\n", "Random T2 slicer index chosen: 12\n", "A total of 1 slices were extracted!\n", "Slice layer [7] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255180 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255180/slicer_7_1.png\n", "Saving slicer 2 for patient 0000255180 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255180/slicer_12_2.png\n", "Saving slicer 3 for patient 0000255180 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255180/slicer_7_3.png\n", "Saving slicer 4 for patient 0000255180 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255180/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000255180.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000240338/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000240338/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000240338/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000240338/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240338/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240338/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240338/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000240338/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 9\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [9] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000240338 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240338/slicer_29_1.png\n", "Saving slicer 2 for patient 0000240338 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240338/slicer_9_2.png\n", "Saving slicer 3 for patient 0000240338 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240338/slicer_29_3.png\n", "Saving slicer 4 for patient 0000240338 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000240338/slicer_9_4.png\n", "Successfully saved 4 slices for patient 0000240338.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280635/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280635/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280635/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280635/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280635/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280635/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280635/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280635/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280635 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280635/slicer_14_1.png\n", "Saving slicer 2 for patient 0000280635 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280635/slicer_21_2.png\n", "Saving slicer 3 for patient 0000280635 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280635/slicer_14_3.png\n", "Saving slicer 4 for patient 0000280635 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280635/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000280635.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000291092/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000291092/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000291092/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000291092/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291092/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291092/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291092/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291092/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 7, 8, 9, 11, 12, 13, 14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [4, 5, 7, 8, 9, 11, 12, 13, 14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [9, 12, 13, 16, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [9, 12, 13, 16, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000291092 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291092/slicer_24_1.png\n", "Saving slicer 2 for patient 0000291092 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291092/slicer_16_2.png\n", "Saving slicer 3 for patient 0000291092 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291092/slicer_24_3.png\n", "Saving slicer 4 for patient 0000291092 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291092/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000291092.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1125013/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1125013/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1125013/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1125013/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1125013/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1125013/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1125013/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1125013/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 8\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "Slice layer [8] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1125013 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1125013/slicer_8_1.png\n", "Saving slicer 2 for patient 00C1125013 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1125013/slicer_24_2.png\n", "Saving slicer 3 for patient 00C1125013 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1125013/slicer_8_3.png\n", "Saving slicer 4 for patient 00C1125013 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1125013/slicer_24_4.png\n", "Successfully saved 4 slices for patient 00C1125013.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270155/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270155/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270155/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270155/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270155/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270155/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270155/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270155/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [3, 6, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [3, 6, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 9\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000270155 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270155/slicer_9_1.png\n", "Saving slicer 2 for patient 0000270155 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270155/slicer_23_2.png\n", "Saving slicer 3 for patient 0000270155 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270155/slicer_9_3.png\n", "Saving slicer 4 for patient 0000270155 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270155/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000270155.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000244301/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000244301/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000244301/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000244301/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244301/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244301/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244301/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244301/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [14, 15, 16, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [14, 15, 16, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000244301 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244301/slicer_14_1.png\n", "Saving slicer 2 for patient 0000244301 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244301/slicer_15_2.png\n", "Saving slicer 3 for patient 0000244301 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244301/slicer_14_3.png\n", "Saving slicer 4 for patient 0000244301 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000244301/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000244301.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000313756/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000313756/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000313756/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000313756/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000313756/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000313756/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000313756/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000313756/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000313756 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000313756/slicer_19_1.png\n", "Saving slicer 2 for patient 0000313756 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000313756/slicer_16_2.png\n", "Saving slicer 3 for patient 0000313756 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000313756/slicer_19_3.png\n", "Saving slicer 4 for patient 0000313756 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000313756/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000313756.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000299049/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000299049/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000299049/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000299049/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299049/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299049/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299049/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000299049/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 39]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 39]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000299049 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299049/slicer_16_1.png\n", "Saving slicer 2 for patient 0000299049 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299049/slicer_19_2.png\n", "Saving slicer 3 for patient 0000299049 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299049/slicer_16_3.png\n", "Saving slicer 4 for patient 0000299049 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000299049/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000299049.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000234987/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000234987/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000234987/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000234987/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000234987/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000234987/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000234987/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000234987/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234987 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000234987/slicer_19_1.png\n", "Saving slicer 2 for patient 0000234987 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000234987/slicer_22_2.png\n", "Saving slicer 3 for patient 0000234987 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000234987/slicer_19_3.png\n", "Saving slicer 4 for patient 0000234987 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000234987/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000234987.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000276895/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000276895/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000276895/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000276895/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276895/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276895/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276895/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276895/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [16, 17, 18, 19, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 17, 18, 19, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000276895 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276895/slicer_20_1.png\n", "Saving slicer 2 for patient 0000276895 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276895/slicer_15_2.png\n", "Saving slicer 3 for patient 0000276895 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276895/slicer_20_3.png\n", "Saving slicer 4 for patient 0000276895 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000276895/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000276895.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263015/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263015/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263015/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263015/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263015/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263015/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263015/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263015/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000263015 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263015/slicer_20_1.png\n", "Saving slicer 2 for patient 0000263015 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263015/slicer_21_2.png\n", "Saving slicer 3 for patient 0000263015 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263015/slicer_20_3.png\n", "Saving slicer 4 for patient 0000263015 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263015/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000263015.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270793/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270793/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270793/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270793/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270793/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270793/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270793/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270793/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000270793 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270793/slicer_26_1.png\n", "Saving slicer 2 for patient 0000270793 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270793/slicer_26_2.png\n", "Saving slicer 3 for patient 0000270793 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270793/slicer_26_3.png\n", "Saving slicer 4 for patient 0000270793 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270793/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000270793.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000301615/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000301615/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000301615/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000301615/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301615/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301615/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301615/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301615/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [19, 20, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [19, 20, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000301615 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301615/slicer_19_1.png\n", "Saving slicer 2 for patient 0000301615 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301615/slicer_17_2.png\n", "Saving slicer 3 for patient 0000301615 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301615/slicer_19_3.png\n", "Saving slicer 4 for patient 0000301615 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301615/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000301615.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259249/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259249/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259249/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259249/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259249/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259249/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259249/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259249/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 12\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [12] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000259249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259249/slicer_30_1.png\n", "Saving slicer 2 for patient 0000259249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259249/slicer_12_2.png\n", "Saving slicer 3 for patient 0000259249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259249/slicer_30_3.png\n", "Saving slicer 4 for patient 0000259249 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259249/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000259249.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259582/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259582/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259582/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259582/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259582/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259582/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259582/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259582/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 13, 14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [9, 13, 14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 9\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [9] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000259582 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259582/slicer_13_1.png\n", "Saving slicer 2 for patient 0000259582 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259582/slicer_9_2.png\n", "Saving slicer 3 for patient 0000259582 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259582/slicer_13_3.png\n", "Saving slicer 4 for patient 0000259582 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259582/slicer_9_4.png\n", "Successfully saved 4 slices for patient 0000259582.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000232677/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000232677/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000232677/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000232677/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000232677/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000232677/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000232677/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000232677/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "Random T1 slicer index chosen: 12\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000232677 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000232677/slicer_12_1.png\n", "Saving slicer 2 for patient 0000232677 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000232677/slicer_21_2.png\n", "Saving slicer 3 for patient 0000232677 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000232677/slicer_12_3.png\n", "Saving slicer 4 for patient 0000232677 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000232677/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000232677.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302880/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302880/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302880/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302880/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302880/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302880/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302880/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302880/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 12, 16, 17, 18, 19, 20, 21, 22, 23, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [7, 8, 9, 10, 12, 16, 17, 18, 19, 20, 21, 22, 23, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [18, 19, 20, 21, 22, 26, 27, 28, 29]\n", "After T2 ROI slices: [18, 19, 20, 21, 22, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302880 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302880/slicer_19_1.png\n", "Saving slicer 2 for patient 0000302880 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302880/slicer_19_2.png\n", "Saving slicer 3 for patient 0000302880 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302880/slicer_19_3.png\n", "Saving slicer 4 for patient 0000302880 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302880/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000302880.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298793/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298793/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298793/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298793/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298793/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298793/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298793/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298793/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298793 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298793/slicer_16_1.png\n", "Saving slicer 2 for patient 0000298793 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298793/slicer_15_2.png\n", "Saving slicer 3 for patient 0000298793 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298793/slicer_16_3.png\n", "Saving slicer 4 for patient 0000298793 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298793/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000298793.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270707/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270707/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270707/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270707/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270707/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270707/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270707/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270707/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 18, 19, 20, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [15, 18, 19, 20, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000270707 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270707/slicer_30_1.png\n", "Saving slicer 2 for patient 0000270707 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270707/slicer_20_2.png\n", "Saving slicer 3 for patient 0000270707 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270707/slicer_30_3.png\n", "Saving slicer 4 for patient 0000270707 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270707/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000270707.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000243739/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000243739/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000243739/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000243739/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243739/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243739/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243739/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243739/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [19, 20, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [19, 20, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000243739 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000243739/slicer_27_1.png\n", "Saving slicer 2 for patient 0000243739 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000243739/slicer_20_2.png\n", "Saving slicer 3 for patient 0000243739 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000243739/slicer_27_3.png\n", "Saving slicer 4 for patient 0000243739 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000243739/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000243739.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286479/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286479/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286479/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286479/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286479/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286479/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286479/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286479/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [5, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [13, 18, 19, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T2 ROI slices: [13, 18, 19, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Random T1 slicer index chosen: 32\n", "Random T2 slicer index chosen: 32\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000286479 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286479/slicer_32_1.png\n", "Saving slicer 2 for patient 0000286479 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286479/slicer_32_2.png\n", "Saving slicer 3 for patient 0000286479 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286479/slicer_32_3.png\n", "Saving slicer 4 for patient 0000286479 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286479/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000286479.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267723/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267723/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267723/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267723/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267723/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267723/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267723/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267723/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [17, 18, 19, 20, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [17, 18, 19, 20, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267723 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267723/slicer_16_1.png\n", "Saving slicer 2 for patient 0000267723 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267723/slicer_19_2.png\n", "Saving slicer 3 for patient 0000267723 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267723/slicer_16_3.png\n", "Saving slicer 4 for patient 0000267723 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267723/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000267723.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292156/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292156/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292156/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292156/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292156/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292156/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292156/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292156/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 5\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000292156 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292156/slicer_27_1.png\n", "Saving slicer 2 for patient 0000292156 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292156/slicer_5_2.png\n", "Saving slicer 3 for patient 0000292156 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292156/slicer_27_3.png\n", "Saving slicer 4 for patient 0000292156 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292156/slicer_5_4.png\n", "Successfully saved 4 slices for patient 0000292156.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000230250/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000230250/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000230250/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000230250/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000230250/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000230250/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000230250/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000230250/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000230250 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000230250/slicer_16_1.png\n", "Saving slicer 2 for patient 0000230250 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000230250/slicer_22_2.png\n", "Saving slicer 3 for patient 0000230250 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000230250/slicer_16_3.png\n", "Saving slicer 4 for patient 0000230250 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000230250/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000230250.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280493/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280493/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280493/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280493/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280493/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280493/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280493/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280493/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280493 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280493/slicer_15_1.png\n", "Saving slicer 2 for patient 0000280493 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280493/slicer_24_2.png\n", "Saving slicer 3 for patient 0000280493 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280493/slicer_15_3.png\n", "Saving slicer 4 for patient 0000280493 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280493/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000280493.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267890/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267890/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267890/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267890/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267890/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267890/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267890/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267890/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [17, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [17, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267890 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267890/slicer_23_1.png\n", "Saving slicer 2 for patient 0000267890 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267890/slicer_25_2.png\n", "Saving slicer 3 for patient 0000267890 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267890/slicer_23_3.png\n", "Saving slicer 4 for patient 0000267890 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267890/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000267890.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000288429/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000288429/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000288429/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000288429/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288429/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288429/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288429/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288429/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [18, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [18, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "Slice layer [27] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000288429 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288429/slicer_27_1.png\n", "Saving slicer 2 for patient 0000288429 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288429/slicer_19_2.png\n", "Saving slicer 3 for patient 0000288429 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288429/slicer_27_3.png\n", "Saving slicer 4 for patient 0000288429 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288429/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000288429.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283256/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283256/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283256/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283256/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283256/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283256/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283256/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283256/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [17, 18, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [17, 18, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [14] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283256 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283256/slicer_18_1.png\n", "Saving slicer 2 for patient 0000283256 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283256/slicer_14_2.png\n", "Saving slicer 3 for patient 0000283256 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283256/slicer_18_3.png\n", "Saving slicer 4 for patient 0000283256 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283256/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000283256.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270621/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270621/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270621/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270621/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270621/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270621/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270621/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270621/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 28, 29]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 28, 29]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [24] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000270621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270621/slicer_14_1.png\n", "Saving slicer 2 for patient 0000270621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270621/slicer_24_2.png\n", "Saving slicer 3 for patient 0000270621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270621/slicer_14_3.png\n", "Saving slicer 4 for patient 0000270621 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270621/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000270621.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256365/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256365/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256365/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256365/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256365/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256365/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256365/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256365/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 5\n", "A total of 1 slices were extracted!\n", "Slice layer [24] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [5] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000256365 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256365/slicer_24_1.png\n", "Saving slicer 2 for patient 0000256365 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256365/slicer_5_2.png\n", "Saving slicer 3 for patient 0000256365 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256365/slicer_24_3.png\n", "Saving slicer 4 for patient 0000256365 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256365/slicer_5_4.png\n", "Successfully saved 4 slices for patient 0000256365.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000278843/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000278843/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000278843/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000278843/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278843/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278843/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278843/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278843/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 12\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000278843 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278843/slicer_25_1.png\n", "Saving slicer 2 for patient 0000278843 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278843/slicer_12_2.png\n", "Saving slicer 3 for patient 0000278843 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278843/slicer_25_3.png\n", "Saving slicer 4 for patient 0000278843 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278843/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000278843.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282385/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282385/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282385/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282385/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282385/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282385/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282385/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282385/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [4, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [15, 16, 17, 18, 25, 26, 27, 28]\n", "After T2 ROI slices: [15, 16, 17, 18, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282385 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282385/slicer_27_1.png\n", "Saving slicer 2 for patient 0000282385 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282385/slicer_29_2.png\n", "Saving slicer 3 for patient 0000282385 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282385/slicer_27_3.png\n", "Saving slicer 4 for patient 0000282385 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282385/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000282385.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000241335/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000241335/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000241335/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000241335/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241335/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241335/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241335/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241335/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [0, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [0, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [7, 10, 11, 12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [7, 10, 11, 12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [14] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000241335 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000241335/slicer_20_1.png\n", "Saving slicer 2 for patient 0000241335 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000241335/slicer_14_2.png\n", "Saving slicer 3 for patient 0000241335 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000241335/slicer_20_3.png\n", "Saving slicer 4 for patient 0000241335 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000241335/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000241335.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272483/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272483/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272483/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272483/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272483/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272483/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272483/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272483/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "Slice layer [26] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000272483 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272483/slicer_26_1.png\n", "Saving slicer 2 for patient 0000272483 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272483/slicer_20_2.png\n", "Saving slicer 3 for patient 0000272483 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272483/slicer_26_3.png\n", "Saving slicer 4 for patient 0000272483 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272483/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000272483.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256057/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256057/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256057/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256057/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256057/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256057/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256057/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256057/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [19, 20, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [19, 20, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000256057 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256057/slicer_27_1.png\n", "Saving slicer 2 for patient 0000256057 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256057/slicer_21_2.png\n", "Saving slicer 3 for patient 0000256057 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256057/slicer_27_3.png\n", "Saving slicer 4 for patient 0000256057 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256057/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000256057.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274122/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274122/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274122/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274122/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274122/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274122/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274122/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274122/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274122 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274122/slicer_21_1.png\n", "Saving slicer 2 for patient 0000274122 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274122/slicer_24_2.png\n", "Saving slicer 3 for patient 0000274122 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274122/slicer_21_3.png\n", "Saving slicer 4 for patient 0000274122 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274122/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000274122.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245339/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245339/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245339/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245339/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245339/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245339/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245339/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245339/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [10, 11, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [10, 11, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 12\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [12] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245339 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245339/slicer_15_1.png\n", "Saving slicer 2 for patient 0000245339 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245339/slicer_12_2.png\n", "Saving slicer 3 for patient 0000245339 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245339/slicer_15_3.png\n", "Saving slicer 4 for patient 0000245339 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245339/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000245339.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300447/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300447/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300447/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300447/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300447/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300447/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300447/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300447/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 10\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000300447 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300447/slicer_21_1.png\n", "Saving slicer 2 for patient 0000300447 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300447/slicer_10_2.png\n", "Saving slicer 3 for patient 0000300447 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300447/slicer_21_3.png\n", "Saving slicer 4 for patient 0000300447 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300447/slicer_10_4.png\n", "Successfully saved 4 slices for patient 0000300447.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281030/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281030/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281030/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281030/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281030/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281030/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281030/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281030/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000281030 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281030/slicer_14_1.png\n", "Saving slicer 2 for patient 0000281030 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281030/slicer_22_2.png\n", "Saving slicer 3 for patient 0000281030 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281030/slicer_14_3.png\n", "Saving slicer 4 for patient 0000281030 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281030/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000281030.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000305951/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000305951/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000305951/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000305951/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305951/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305951/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305951/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305951/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [19, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [19, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [27, 28, 29]\n", "After T2 ROI slices: [27, 28, 29]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "Slice layer [26] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000305951 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305951/slicer_26_1.png\n", "Saving slicer 2 for patient 0000305951 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305951/slicer_29_2.png\n", "Saving slicer 3 for patient 0000305951 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305951/slicer_26_3.png\n", "Saving slicer 4 for patient 0000305951 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305951/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000305951.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000236079/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000236079/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000236079/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000236079/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000236079/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000236079/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000236079/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000236079/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [3, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [3, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "After T2 ROI slices: [3, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "Random T1 slicer index chosen: 9\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000236079 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000236079/slicer_9_1.png\n", "Saving slicer 2 for patient 0000236079 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000236079/slicer_19_2.png\n", "Saving slicer 3 for patient 0000236079 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000236079/slicer_9_3.png\n", "Saving slicer 4 for patient 0000236079 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000236079/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000236079.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000296628/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000296628/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000296628/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000296628/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296628/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296628/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296628/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296628/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 3\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [3] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000296628 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296628/slicer_15_1.png\n", "Saving slicer 2 for patient 0000296628 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296628/slicer_3_2.png\n", "Saving slicer 3 for patient 0000296628 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296628/slicer_15_3.png\n", "Saving slicer 4 for patient 0000296628 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296628/slicer_3_4.png\n", "Successfully saved 4 slices for patient 0000296628.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000239475/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000239475/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000239475/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000239475/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239475/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239475/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239475/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239475/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [1, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [1, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000239475 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239475/slicer_25_1.png\n", "Saving slicer 2 for patient 0000239475 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239475/slicer_15_2.png\n", "Saving slicer 3 for patient 0000239475 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239475/slicer_25_3.png\n", "Saving slicer 4 for patient 0000239475 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239475/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000239475.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000235364/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000235364/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000235364/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000235364/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235364/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235364/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235364/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235364/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000235364 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235364/slicer_24_1.png\n", "Saving slicer 2 for patient 0000235364 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235364/slicer_28_2.png\n", "Saving slicer 3 for patient 0000235364 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235364/slicer_24_3.png\n", "Saving slicer 4 for patient 0000235364 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235364/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000235364.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245462/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245462/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245462/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245462/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245462/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245462/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245462/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245462/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [12, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [12, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245462 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245462/slicer_15_1.png\n", "Saving slicer 2 for patient 0000245462 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245462/slicer_23_2.png\n", "Saving slicer 3 for patient 0000245462 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245462/slicer_15_3.png\n", "Saving slicer 4 for patient 0000245462 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245462/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000245462.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000289189/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000289189/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000289189/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000289189/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289189/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289189/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289189/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289189/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000289189 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289189/slicer_16_1.png\n", "Saving slicer 2 for patient 0000289189 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289189/slicer_23_2.png\n", "Saving slicer 3 for patient 0000289189 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289189/slicer_16_3.png\n", "Saving slicer 4 for patient 0000289189 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289189/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000289189.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1126907/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1126907/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1126907/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1126907/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1126907/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1126907/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1126907/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1126907/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [17, 18, 19, 20, 26, 27, 28, 29]\n", "After T2 ROI slices: [17, 18, 19, 20, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [25] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1126907 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1126907/slicer_26_1.png\n", "Saving slicer 2 for patient 00C1126907 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1126907/slicer_25_2.png\n", "Saving slicer 3 for patient 00C1126907 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1126907/slicer_26_3.png\n", "Saving slicer 4 for patient 00C1126907 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1126907/slicer_25_4.png\n", "Successfully saved 4 slices for patient 00C1126907.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000251579/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000251579/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000251579/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000251579/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251579/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251579/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251579/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251579/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [16, 17, 26, 27, 28, 29]\n", "After T2 ROI slices: [16, 17, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 11\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "Slice layer [11] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000251579 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000251579/slicer_11_1.png\n", "Saving slicer 2 for patient 0000251579 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000251579/slicer_18_2.png\n", "Saving slicer 3 for patient 0000251579 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000251579/slicer_11_3.png\n", "Saving slicer 4 for patient 0000251579 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000251579/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000251579.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284582/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284582/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284582/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284582/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284582/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284582/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284582/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284582/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [10, 11, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 10\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [10] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284582 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284582/slicer_26_1.png\n", "Saving slicer 2 for patient 0000284582 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284582/slicer_10_2.png\n", "Saving slicer 3 for patient 0000284582 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284582/slicer_26_3.png\n", "Saving slicer 4 for patient 0000284582 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284582/slicer_10_4.png\n", "Successfully saved 4 slices for patient 0000284582.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248372/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248372/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248372/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248372/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248372/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248372/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248372/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248372/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [5, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 5\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [5] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248372 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248372/slicer_24_1.png\n", "Saving slicer 2 for patient 0000248372 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248372/slicer_5_2.png\n", "Saving slicer 3 for patient 0000248372 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248372/slicer_24_3.png\n", "Saving slicer 4 for patient 0000248372 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248372/slicer_5_4.png\n", "Successfully saved 4 slices for patient 0000248372.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297956/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297956/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000297956/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000297956/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297956/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297956/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297956/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000297956/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [17, 18, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [17, 18, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000297956 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297956/slicer_22_1.png\n", "Saving slicer 2 for patient 0000297956 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297956/slicer_21_2.png\n", "Saving slicer 3 for patient 0000297956 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297956/slicer_22_3.png\n", "Saving slicer 4 for patient 0000297956 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000297956/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000297956.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000278905/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000278905/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000278905/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000278905/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278905/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278905/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278905/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000278905/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [17, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000278905 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278905/slicer_26_1.png\n", "Saving slicer 2 for patient 0000278905 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278905/slicer_24_2.png\n", "Saving slicer 3 for patient 0000278905 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278905/slicer_26_3.png\n", "Saving slicer 4 for patient 0000278905 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000278905/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000278905.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272666/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272666/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272666/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272666/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272666/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272666/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272666/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272666/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "Before T2 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "After T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23]\n", "After T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23]\n", "Random T1 slicer index chosen: 2\n", "Random T2 slicer index chosen: 8\n", "A total of 1 slices were extracted!\n", "Slice layer [2] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [8] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000272666 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272666/slicer_2_1.png\n", "Saving slicer 2 for patient 0000272666 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272666/slicer_8_2.png\n", "Saving slicer 3 for patient 0000272666 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272666/slicer_2_3.png\n", "Saving slicer 4 for patient 0000272666 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272666/slicer_8_4.png\n", "Successfully saved 4 slices for patient 0000272666.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268843/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268843/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268843/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268843/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268843/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268843/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268843/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268843/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [9, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000268843 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268843/slicer_20_1.png\n", "Saving slicer 2 for patient 0000268843 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268843/slicer_17_2.png\n", "Saving slicer 3 for patient 0000268843 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268843/slicer_20_3.png\n", "Saving slicer 4 for patient 0000268843 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268843/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000268843.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000289280/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000289280/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000289280/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000289280/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289280/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289280/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289280/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289280/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "After T1 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "After T2 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000289280 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289280/slicer_30_1.png\n", "Saving slicer 2 for patient 0000289280 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289280/slicer_24_2.png\n", "Saving slicer 3 for patient 0000289280 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289280/slicer_30_3.png\n", "Saving slicer 4 for patient 0000289280 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289280/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000289280.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000307384/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000307384/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000307384/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000307384/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307384/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307384/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307384/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307384/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [4, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [11, 12, 15, 16, 17, 18, 19, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [11, 12, 15, 16, 17, 18, 19, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000307384 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307384/slicer_13_1.png\n", "Saving slicer 2 for patient 0000307384 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307384/slicer_26_2.png\n", "Saving slicer 3 for patient 0000307384 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307384/slicer_13_3.png\n", "Saving slicer 4 for patient 0000307384 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000307384/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000307384.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295600/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295600/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295600/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295600/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295600/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295600/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295600/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295600/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [16, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [16, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "Slice layer [28] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295600 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295600/slicer_28_1.png\n", "Saving slicer 2 for patient 0000295600 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295600/slicer_16_2.png\n", "Saving slicer 3 for patient 0000295600 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295600/slicer_28_3.png\n", "Saving slicer 4 for patient 0000295600 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295600/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000295600.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000269639/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000269639/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000269639/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000269639/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269639/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269639/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269639/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269639/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [9, 11, 12, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [9, 11, 12, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [14] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000269639 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269639/slicer_24_1.png\n", "Saving slicer 2 for patient 0000269639 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269639/slicer_14_2.png\n", "Saving slicer 3 for patient 0000269639 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269639/slicer_24_3.png\n", "Saving slicer 4 for patient 0000269639 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269639/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000269639.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282101/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282101/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282101/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282101/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282101/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282101/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282101/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282101/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 5\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282101 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282101/slicer_5_1.png\n", "Saving slicer 2 for patient 0000282101 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282101/slicer_19_2.png\n", "Saving slicer 3 for patient 0000282101 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282101/slicer_5_3.png\n", "Saving slicer 4 for patient 0000282101 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282101/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000282101.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000306771/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000306771/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000306771/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000306771/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306771/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306771/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306771/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306771/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 11\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000306771 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306771/slicer_11_1.png\n", "Saving slicer 2 for patient 0000306771 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306771/slicer_26_2.png\n", "Saving slicer 3 for patient 0000306771 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306771/slicer_11_3.png\n", "Saving slicer 4 for patient 0000306771 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306771/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000306771.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000261612/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000261612/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000261612/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000261612/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261612/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261612/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261612/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261612/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20]\n", "After T1 ROI slices: [14, 15, 19, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [14, 15, 19, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 9\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [9] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000261612 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000261612/slicer_13_1.png\n", "Saving slicer 2 for patient 0000261612 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000261612/slicer_9_2.png\n", "Saving slicer 3 for patient 0000261612 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000261612/slicer_13_3.png\n", "Saving slicer 4 for patient 0000261612 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000261612/slicer_9_4.png\n", "Successfully saved 4 slices for patient 0000261612.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000260213/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000260213/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000260213/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000260213/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260213/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260213/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260213/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260213/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [7, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 30\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000260213 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260213/slicer_26_1.png\n", "Saving slicer 2 for patient 0000260213 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260213/slicer_30_2.png\n", "Saving slicer 3 for patient 0000260213 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260213/slicer_26_3.png\n", "Saving slicer 4 for patient 0000260213 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000260213/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000260213.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000258324/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000258324/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000258324/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000258324/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258324/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258324/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258324/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000258324/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [18, 19, 20, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [18, 19, 20, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 30\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [30] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000258324 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258324/slicer_24_1.png\n", "Saving slicer 2 for patient 0000258324 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258324/slicer_30_2.png\n", "Saving slicer 3 for patient 0000258324 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258324/slicer_24_3.png\n", "Saving slicer 4 for patient 0000258324 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000258324/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000258324.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255206/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255206/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255206/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255206/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255206/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255206/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255206/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255206/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255206 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255206/slicer_20_1.png\n", "Saving slicer 2 for patient 0000255206 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255206/slicer_21_2.png\n", "Saving slicer 3 for patient 0000255206 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255206/slicer_20_3.png\n", "Saving slicer 4 for patient 0000255206 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255206/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000255206.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000273913/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000273913/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000273913/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000273913/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273913/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273913/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273913/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000273913/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [8, 9, 10, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "Slice layer [14] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000273913 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273913/slicer_14_1.png\n", "Saving slicer 2 for patient 0000273913 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273913/slicer_21_2.png\n", "Saving slicer 3 for patient 0000273913 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273913/slicer_14_3.png\n", "Saving slicer 4 for patient 0000273913 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000273913/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000273913.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000285442/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000285442/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000285442/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000285442/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285442/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285442/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285442/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000285442/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000285442 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285442/slicer_26_1.png\n", "Saving slicer 2 for patient 0000285442 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285442/slicer_26_2.png\n", "Saving slicer 3 for patient 0000285442 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285442/slicer_26_3.png\n", "Saving slicer 4 for patient 0000285442 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000285442/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000285442.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267364/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267364/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267364/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267364/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267364/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267364/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267364/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267364/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [18, 19, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [18, 19, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267364 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267364/slicer_22_1.png\n", "Saving slicer 2 for patient 0000267364 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267364/slicer_27_2.png\n", "Saving slicer 3 for patient 0000267364 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267364/slicer_22_3.png\n", "Saving slicer 4 for patient 0000267364 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267364/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000267364.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300503/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300503/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300503/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300503/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300503/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300503/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300503/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300503/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [15, 16, 17, 18, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [18, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [18, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000300503 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300503/slicer_24_1.png\n", "Saving slicer 2 for patient 0000300503 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300503/slicer_26_2.png\n", "Saving slicer 3 for patient 0000300503 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300503/slicer_24_3.png\n", "Saving slicer 4 for patient 0000300503 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300503/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000300503.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000262486/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000262486/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000262486/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000262486/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262486/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262486/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262486/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000262486/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [14] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000262486 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262486/slicer_13_1.png\n", "Saving slicer 2 for patient 0000262486 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262486/slicer_14_2.png\n", "Saving slicer 3 for patient 0000262486 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262486/slicer_13_3.png\n", "Saving slicer 4 for patient 0000262486 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000262486/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000262486.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283139/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283139/mask_all.nii.gz\n", "Image shape: (36, 336, 336), Mask shape: (36, 336, 336)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283139/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283139/mask_all.nii.gz\n", "Image shape: (36, 336, 336), Mask shape: (36, 336, 336)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283139/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283139/mask_all.nii.gz\n", "Image shape: (36, 336, 336), Mask shape: (36, 336, 336)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283139/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283139/mask_all.nii.gz\n", "Image shape: (36, 336, 336), Mask shape: (36, 336, 336)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 24, 25, 26, 27]\n", "After T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [23] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283139 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283139/slicer_19_1.png\n", "Saving slicer 2 for patient 0000283139 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283139/slicer_23_2.png\n", "Saving slicer 3 for patient 0000283139 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283139/slicer_19_3.png\n", "Saving slicer 4 for patient 0000283139 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283139/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000283139.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000308774/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000308774/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000308774/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000308774/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308774/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308774/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308774/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308774/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 19, 20, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [18, 19, 20, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [18, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [18, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000308774 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308774/slicer_19_1.png\n", "Saving slicer 2 for patient 0000308774 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308774/slicer_27_2.png\n", "Saving slicer 3 for patient 0000308774 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308774/slicer_19_3.png\n", "Saving slicer 4 for patient 0000308774 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308774/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000308774.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000288072/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000288072/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000288072/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000288072/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288072/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288072/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288072/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288072/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [4, 7, 8, 9, 10, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [4, 7, 8, 9, 10, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 12\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [12] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000288072 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288072/slicer_22_1.png\n", "Saving slicer 2 for patient 0000288072 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288072/slicer_12_2.png\n", "Saving slicer 3 for patient 0000288072 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288072/slicer_22_3.png\n", "Saving slicer 4 for patient 0000288072 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288072/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000288072.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302914/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302914/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302914/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302914/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302914/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302914/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302914/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302914/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [10, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [10, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302914 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302914/slicer_17_1.png\n", "Saving slicer 2 for patient 0000302914 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302914/slicer_22_2.png\n", "Saving slicer 3 for patient 0000302914 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302914/slicer_17_3.png\n", "Saving slicer 4 for patient 0000302914 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302914/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000302914.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263355/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263355/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263355/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263355/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263355/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263355/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263355/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263355/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000263355 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263355/slicer_27_1.png\n", "Saving slicer 2 for patient 0000263355 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263355/slicer_29_2.png\n", "Saving slicer 3 for patient 0000263355 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263355/slicer_27_3.png\n", "Saving slicer 4 for patient 0000263355 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263355/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000263355.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267650/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267650/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267650/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267650/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267650/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267650/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267650/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267650/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [10, 11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [18, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [18, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 30\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267650 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267650/slicer_20_1.png\n", "Saving slicer 2 for patient 0000267650 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267650/slicer_30_2.png\n", "Saving slicer 3 for patient 0000267650 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267650/slicer_20_3.png\n", "Saving slicer 4 for patient 0000267650 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267650/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000267650.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249746/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249746/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249746/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249746/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249746/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249746/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249746/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249746/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [2, 3, 4, 5, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [2, 3, 4, 5, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249746 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249746/slicer_22_1.png\n", "Saving slicer 2 for patient 0000249746 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249746/slicer_24_2.png\n", "Saving slicer 3 for patient 0000249746 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249746/slicer_22_3.png\n", "Saving slicer 4 for patient 0000249746 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000249746/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000249746.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279415/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279415/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279415/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279415/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279415/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279415/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279415/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279415/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 17, 18, 19, 20, 21, 22, 23, 24]\n", "After T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 17, 18, 19, 20, 21, 22, 23, 24]\n", "Random T1 slicer index chosen: 4\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "Slice layer [4] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279415 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279415/slicer_4_1.png\n", "Saving slicer 2 for patient 0000279415 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279415/slicer_21_2.png\n", "Saving slicer 3 for patient 0000279415 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279415/slicer_4_3.png\n", "Saving slicer 4 for patient 0000279415 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279415/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000279415.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287655/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287655/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287655/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287655/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287655/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287655/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287655/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287655/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 32\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287655 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287655/slicer_29_1.png\n", "Saving slicer 2 for patient 0000287655 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287655/slicer_32_2.png\n", "Saving slicer 3 for patient 0000287655 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287655/slicer_29_3.png\n", "Saving slicer 4 for patient 0000287655 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000287655/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000287655.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254435/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254435/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254435/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254435/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254435/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254435/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254435/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254435/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000254435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254435/slicer_26_1.png\n", "Saving slicer 2 for patient 0000254435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254435/slicer_27_2.png\n", "Saving slicer 3 for patient 0000254435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254435/slicer_26_3.png\n", "Saving slicer 4 for patient 0000254435 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254435/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000254435.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272232/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272232/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272232/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272232/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272232/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272232/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272232/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272232/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [6, 8, 9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [6, 8, 9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000272232 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272232/slicer_24_1.png\n", "Saving slicer 2 for patient 0000272232 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272232/slicer_18_2.png\n", "Saving slicer 3 for patient 0000272232 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272232/slicer_24_3.png\n", "Saving slicer 4 for patient 0000272232 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000272232/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000272232.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267824/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267824/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267824/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267824/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267824/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267824/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267824/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267824/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267824 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267824/slicer_18_1.png\n", "Saving slicer 2 for patient 0000267824 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267824/slicer_16_2.png\n", "Saving slicer 3 for patient 0000267824 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267824/slicer_18_3.png\n", "Saving slicer 4 for patient 0000267824 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267824/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000267824.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257528/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257528/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257528/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257528/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257528/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257528/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257528/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257528/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 11\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000257528 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257528/slicer_11_1.png\n", "Saving slicer 2 for patient 0000257528 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257528/slicer_23_2.png\n", "Saving slicer 3 for patient 0000257528 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257528/slicer_11_3.png\n", "Saving slicer 4 for patient 0000257528 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257528/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000257528.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000269660/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000269660/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000269660/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000269660/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269660/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269660/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269660/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269660/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 17, 18, 19, 20, 21, 22, 23, 24]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 17, 18, 19, 20, 21, 22, 23, 24]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000269660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269660/slicer_13_1.png\n", "Saving slicer 2 for patient 0000269660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269660/slicer_21_2.png\n", "Saving slicer 3 for patient 0000269660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269660/slicer_13_3.png\n", "Saving slicer 4 for patient 0000269660 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269660/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000269660.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255165/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255165/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255165/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255165/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255165/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255165/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255165/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255165/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255165 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255165/slicer_21_1.png\n", "Saving slicer 2 for patient 0000255165 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255165/slicer_16_2.png\n", "Saving slicer 3 for patient 0000255165 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255165/slicer_21_3.png\n", "Saving slicer 4 for patient 0000255165 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255165/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000255165.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000246685/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000246685/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000246685/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000246685/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246685/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246685/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246685/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246685/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000246685 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246685/slicer_25_1.png\n", "Saving slicer 2 for patient 0000246685 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246685/slicer_15_2.png\n", "Saving slicer 3 for patient 0000246685 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246685/slicer_25_3.png\n", "Saving slicer 4 for patient 0000246685 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246685/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000246685.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290920/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290920/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290920/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290920/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290920/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290920/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290920/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290920/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [10, 12, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [10, 12, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000290920 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290920/slicer_15_1.png\n", "Saving slicer 2 for patient 0000290920 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290920/slicer_20_2.png\n", "Saving slicer 3 for patient 0000290920 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290920/slicer_15_3.png\n", "Saving slicer 4 for patient 0000290920 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290920/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000290920.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263801/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263801/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263801/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263801/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263801/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263801/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263801/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263801/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [17, 18, 19, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [17, 18, 19, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 6\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [6] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000263801 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263801/slicer_13_1.png\n", "Saving slicer 2 for patient 0000263801 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263801/slicer_6_2.png\n", "Saving slicer 3 for patient 0000263801 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263801/slicer_13_3.png\n", "Saving slicer 4 for patient 0000263801 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263801/slicer_6_4.png\n", "Successfully saved 4 slices for patient 0000263801.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000305371/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000305371/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000305371/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000305371/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305371/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305371/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305371/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000305371/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000305371 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305371/slicer_24_1.png\n", "Saving slicer 2 for patient 0000305371 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305371/slicer_28_2.png\n", "Saving slicer 3 for patient 0000305371 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305371/slicer_24_3.png\n", "Saving slicer 4 for patient 0000305371 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000305371/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000305371.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280898/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280898/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280898/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280898/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280898/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280898/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280898/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280898/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [6, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [6, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 7\n", "Random T2 slicer index chosen: 11\n", "A total of 1 slices were extracted!\n", "Slice layer [7] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [11] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280898 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280898/slicer_7_1.png\n", "Saving slicer 2 for patient 0000280898 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280898/slicer_11_2.png\n", "Saving slicer 3 for patient 0000280898 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280898/slicer_7_3.png\n", "Saving slicer 4 for patient 0000280898 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280898/slicer_11_4.png\n", "Successfully saved 4 slices for patient 0000280898.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300040/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300040/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300040/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300040/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300040/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300040/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300040/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300040/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "Slice layer [27] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000300040 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300040/slicer_27_1.png\n", "Saving slicer 2 for patient 0000300040 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300040/slicer_16_2.png\n", "Saving slicer 3 for patient 0000300040 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300040/slicer_27_3.png\n", "Saving slicer 4 for patient 0000300040 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000300040/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000300040.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000238666/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000238666/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000238666/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000238666/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000238666/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000238666/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000238666/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000238666/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "Before T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "After T1 ROI slices: [9, 10, 11, 15, 16, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [9, 10, 11, 15, 16, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 5\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [5] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238666 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000238666/slicer_16_1.png\n", "Saving slicer 2 for patient 0000238666 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000238666/slicer_5_2.png\n", "Saving slicer 3 for patient 0000238666 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000238666/slicer_16_3.png\n", "Saving slicer 4 for patient 0000238666 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000238666/slicer_5_4.png\n", "Successfully saved 4 slices for patient 0000238666.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000291265/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000291265/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000291265/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000291265/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291265/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291265/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291265/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291265/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000291265 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291265/slicer_15_1.png\n", "Saving slicer 2 for patient 0000291265 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291265/slicer_22_2.png\n", "Saving slicer 3 for patient 0000291265 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291265/slicer_15_3.png\n", "Saving slicer 4 for patient 0000291265 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291265/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000291265.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290993/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290993/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290993/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290993/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290993/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290993/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290993/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290993/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 5, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [3, 4, 5, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [5, 9, 10, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [5, 9, 10, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 3\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [3] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000290993 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290993/slicer_26_1.png\n", "Saving slicer 2 for patient 0000290993 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290993/slicer_3_2.png\n", "Saving slicer 3 for patient 0000290993 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290993/slicer_26_3.png\n", "Saving slicer 4 for patient 0000290993 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290993/slicer_3_4.png\n", "Successfully saved 4 slices for patient 0000290993.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290273/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290273/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000290273/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000290273/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290273/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290273/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290273/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000290273/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [18, 19, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [18, 19, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000290273 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290273/slicer_19_1.png\n", "Saving slicer 2 for patient 0000290273 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290273/slicer_21_2.png\n", "Saving slicer 3 for patient 0000290273 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290273/slicer_19_3.png\n", "Saving slicer 4 for patient 0000290273 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000290273/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000290273.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000288721/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000288721/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000288721/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000288721/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288721/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288721/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288721/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000288721/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 1\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "Slice layer [1] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000288721 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288721/slicer_1_1.png\n", "Saving slicer 2 for patient 0000288721 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288721/slicer_15_2.png\n", "Saving slicer 3 for patient 0000288721 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288721/slicer_1_3.png\n", "Saving slicer 4 for patient 0000288721 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000288721/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000288721.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000246182/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000246182/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000246182/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000246182/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246182/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246182/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246182/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246182/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000246182 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246182/slicer_19_1.png\n", "Saving slicer 2 for patient 0000246182 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246182/slicer_25_2.png\n", "Saving slicer 3 for patient 0000246182 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246182/slicer_19_3.png\n", "Saving slicer 4 for patient 0000246182 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000246182/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000246182.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284649/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284649/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284649/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284649/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284649/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284649/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284649/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284649/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284649 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284649/slicer_16_1.png\n", "Saving slicer 2 for patient 0000284649 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284649/slicer_16_2.png\n", "Saving slicer 3 for patient 0000284649 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284649/slicer_16_3.png\n", "Saving slicer 4 for patient 0000284649 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284649/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000284649.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000301307/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000301307/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000301307/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000301307/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301307/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301307/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301307/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301307/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [15, 16, 18, 19, 20, 21, 22, 23, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [15, 16, 18, 19, 20, 21, 22, 23, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 31\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000301307 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301307/slicer_16_1.png\n", "Saving slicer 2 for patient 0000301307 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301307/slicer_31_2.png\n", "Saving slicer 3 for patient 0000301307 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301307/slicer_16_3.png\n", "Saving slicer 4 for patient 0000301307 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000301307/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000301307.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295784/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295784/mask_all.nii.gz\n", "Image shape: (44, 352, 352), Mask shape: (44, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295784/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295784/mask_all.nii.gz\n", "Image shape: (44, 352, 352), Mask shape: (44, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295784/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295784/mask_all.nii.gz\n", "Image shape: (44, 352, 352), Mask shape: (44, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295784/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295784/mask_all.nii.gz\n", "Image shape: (44, 352, 352), Mask shape: (44, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 9, 17, 18, 19, 20, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [4, 9, 17, 18, 19, 20, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [20, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [20, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 30\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295784 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295784/slicer_28_1.png\n", "Saving slicer 2 for patient 0000295784 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295784/slicer_30_2.png\n", "Saving slicer 3 for patient 0000295784 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295784/slicer_28_3.png\n", "Saving slicer 4 for patient 0000295784 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295784/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000295784.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000308556/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000308556/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000308556/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000308556/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308556/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308556/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308556/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308556/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [7, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [7, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000308556 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308556/slicer_17_1.png\n", "Saving slicer 2 for patient 0000308556 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308556/slicer_19_2.png\n", "Saving slicer 3 for patient 0000308556 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308556/slicer_17_3.png\n", "Saving slicer 4 for patient 0000308556 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308556/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000308556.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270571/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270571/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270571/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270571/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270571/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270571/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270571/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270571/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 9, 10, 12, 13, 14, 15, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [6, 7, 9, 10, 12, 13, 14, 15, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [13, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [13, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 13\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000270571 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270571/slicer_27_1.png\n", "Saving slicer 2 for patient 0000270571 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270571/slicer_13_2.png\n", "Saving slicer 3 for patient 0000270571 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270571/slicer_27_3.png\n", "Saving slicer 4 for patient 0000270571 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270571/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000270571.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281733/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281733/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281733/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281733/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281733/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281733/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281733/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281733/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000281733 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281733/slicer_27_1.png\n", "Saving slicer 2 for patient 0000281733 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281733/slicer_27_2.png\n", "Saving slicer 3 for patient 0000281733 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281733/slicer_27_3.png\n", "Saving slicer 4 for patient 0000281733 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000281733/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000281733.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000237337/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000237337/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000237337/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000237337/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237337/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237337/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237337/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237337/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237337 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000237337/slicer_26_1.png\n", "Saving slicer 2 for patient 0000237337 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000237337/slicer_26_2.png\n", "Saving slicer 3 for patient 0000237337 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000237337/slicer_26_3.png\n", "Saving slicer 4 for patient 0000237337 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000237337/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000237337.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000264117/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000264117/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000264117/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000264117/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264117/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264117/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264117/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264117/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 6, 7, 8, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [2, 3, 4, 6, 7, 8, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 23, 24, 25]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 23, 24, 25]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 6\n", "A total of 1 slices were extracted!\n", "Slice layer [26] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [6] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000264117 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264117/slicer_26_1.png\n", "Saving slicer 2 for patient 0000264117 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264117/slicer_6_2.png\n", "Saving slicer 3 for patient 0000264117 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264117/slicer_26_3.png\n", "Saving slicer 4 for patient 0000264117 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000264117/slicer_6_4.png\n", "Successfully saved 4 slices for patient 0000264117.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293374/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293374/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293374/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293374/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293374/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293374/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293374/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293374/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 11\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293374 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293374/slicer_11_1.png\n", "Saving slicer 2 for patient 0000293374 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293374/slicer_19_2.png\n", "Saving slicer 3 for patient 0000293374 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293374/slicer_11_3.png\n", "Saving slicer 4 for patient 0000293374 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293374/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000293374.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000243334/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000243334/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000243334/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000243334/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243334/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243334/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243334/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243334/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 9\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [9] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000243334 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000243334/slicer_25_1.png\n", "Saving slicer 2 for patient 0000243334 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000243334/slicer_9_2.png\n", "Saving slicer 3 for patient 0000243334 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000243334/slicer_25_3.png\n", "Saving slicer 4 for patient 0000243334 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000243334/slicer_9_4.png\n", "Successfully saved 4 slices for patient 0000243334.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263475/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263475/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263475/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263475/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263475/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263475/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263475/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263475/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000263475 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263475/slicer_20_1.png\n", "Saving slicer 2 for patient 0000263475 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263475/slicer_27_2.png\n", "Saving slicer 3 for patient 0000263475 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263475/slicer_20_3.png\n", "Saving slicer 4 for patient 0000263475 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000263475/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000263475.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283054/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283054/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283054/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283054/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283054/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283054/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283054/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283054/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 19, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [18, 19, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [20, 21, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T2 ROI slices: [20, 21, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 31\n", "A total of 1 slices were extracted!\n", "Slice layer [24] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283054 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283054/slicer_24_1.png\n", "Saving slicer 2 for patient 0000283054 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283054/slicer_31_2.png\n", "Saving slicer 3 for patient 0000283054 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283054/slicer_24_3.png\n", "Saving slicer 4 for patient 0000283054 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283054/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000283054.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267881/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267881/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267881/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267881/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267881/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267881/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267881/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267881/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [15, 16, 17, 18, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [15, 16, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [15, 16, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267881 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267881/slicer_22_1.png\n", "Saving slicer 2 for patient 0000267881 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267881/slicer_18_2.png\n", "Saving slicer 3 for patient 0000267881 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267881/slicer_22_3.png\n", "Saving slicer 4 for patient 0000267881 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267881/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000267881.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000312645/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000312645/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000312645/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000312645/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312645/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312645/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312645/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000312645/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000312645 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312645/slicer_18_1.png\n", "Saving slicer 2 for patient 0000312645 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312645/slicer_17_2.png\n", "Saving slicer 3 for patient 0000312645 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312645/slicer_18_3.png\n", "Saving slicer 4 for patient 0000312645 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000312645/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000312645.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000304275/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000304275/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000304275/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000304275/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304275/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304275/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304275/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304275/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304275 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000304275/slicer_23_1.png\n", "Saving slicer 2 for patient 0000304275 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000304275/slicer_27_2.png\n", "Saving slicer 3 for patient 0000304275 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000304275/slicer_23_3.png\n", "Saving slicer 4 for patient 0000304275 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000304275/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000304275.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283599/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283599/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283599/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283599/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283599/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283599/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283599/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283599/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283599/slicer_16_1.png\n", "Saving slicer 2 for patient 0000283599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283599/slicer_23_2.png\n", "Saving slicer 3 for patient 0000283599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283599/slicer_16_3.png\n", "Saving slicer 4 for patient 0000283599 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283599/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000283599.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292346/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292346/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292346/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292346/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292346/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292346/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292346/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292346/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [19, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [19, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [19, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [19, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000292346 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292346/slicer_19_1.png\n", "Saving slicer 2 for patient 0000292346 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292346/slicer_28_2.png\n", "Saving slicer 3 for patient 0000292346 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292346/slicer_19_3.png\n", "Saving slicer 4 for patient 0000292346 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292346/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000292346.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000253649/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000253649/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000253649/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000253649/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253649/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253649/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253649/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253649/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [2, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000253649 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000253649/slicer_25_1.png\n", "Saving slicer 2 for patient 0000253649 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000253649/slicer_25_2.png\n", "Saving slicer 3 for patient 0000253649 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000253649/slicer_25_3.png\n", "Saving slicer 4 for patient 0000253649 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000253649/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000253649.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000242297/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000242297/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000242297/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000242297/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242297/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242297/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242297/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242297/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000242297 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000242297/slicer_22_1.png\n", "Saving slicer 2 for patient 0000242297 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000242297/slicer_28_2.png\n", "Saving slicer 3 for patient 0000242297 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000242297/slicer_22_3.png\n", "Saving slicer 4 for patient 0000242297 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000242297/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000242297.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245454/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245454/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000245454/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000245454/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245454/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245454/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245454/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000245454/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [13, 15, 16, 17, 18, 19, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [13, 15, 16, 17, 18, 19, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000245454 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245454/slicer_28_1.png\n", "Saving slicer 2 for patient 0000245454 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245454/slicer_26_2.png\n", "Saving slicer 3 for patient 0000245454 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245454/slicer_28_3.png\n", "Saving slicer 4 for patient 0000245454 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000245454/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000245454.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286580/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286580/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286580/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286580/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286580/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286580/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286580/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286580/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 8\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000286580 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286580/slicer_15_1.png\n", "Saving slicer 2 for patient 0000286580 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286580/slicer_8_2.png\n", "Saving slicer 3 for patient 0000286580 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286580/slicer_15_3.png\n", "Saving slicer 4 for patient 0000286580 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286580/slicer_8_4.png\n", "Successfully saved 4 slices for patient 0000286580.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266021/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266021/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266021/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266021/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266021/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266021/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266021/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266021/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [19, 21, 22, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T2 ROI slices: [19, 21, 22, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266021/slicer_28_1.png\n", "Saving slicer 2 for patient 0000266021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266021/slicer_29_2.png\n", "Saving slicer 3 for patient 0000266021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266021/slicer_28_3.png\n", "Saving slicer 4 for patient 0000266021 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266021/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000266021.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266113/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266113/mask_all.nii.gz\n", "Image shape: (36, 256, 256), Mask shape: (36, 256, 256)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266113/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266113/mask_all.nii.gz\n", "Image shape: (36, 256, 256), Mask shape: (36, 256, 256)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266113/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266113/mask_all.nii.gz\n", "Image shape: (36, 256, 256), Mask shape: (36, 256, 256)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266113/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266113/mask_all.nii.gz\n", "Image shape: (36, 256, 256), Mask shape: (36, 256, 256)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [18, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [18, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 32\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266113 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266113/slicer_28_1.png\n", "Saving slicer 2 for patient 0000266113 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266113/slicer_32_2.png\n", "Saving slicer 3 for patient 0000266113 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266113/slicer_28_3.png\n", "Saving slicer 4 for patient 0000266113 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266113/slicer_32_4.png\n", "Successfully saved 4 slices for patient 0000266113.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283724/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283724/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283724/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283724/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283724/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283724/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283724/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283724/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [8, 9, 10, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 26, 27, 28, 29]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283724/slicer_26_1.png\n", "Saving slicer 2 for patient 0000283724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283724/slicer_28_2.png\n", "Saving slicer 3 for patient 0000283724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283724/slicer_26_3.png\n", "Saving slicer 4 for patient 0000283724 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000283724/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000283724.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000275979/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000275979/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000275979/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000275979/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275979/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275979/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275979/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275979/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [3, 4, 5, 6, 7, 8, 9, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [3, 4, 5, 6, 7, 8, 9, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 4\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275979 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000275979/slicer_17_1.png\n", "Saving slicer 2 for patient 0000275979 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000275979/slicer_4_2.png\n", "Saving slicer 3 for patient 0000275979 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000275979/slicer_17_3.png\n", "Saving slicer 4 for patient 0000275979 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000275979/slicer_4_4.png\n", "Successfully saved 4 slices for patient 0000275979.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268517/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268517/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268517/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268517/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268517/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268517/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268517/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268517/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000268517 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268517/slicer_21_1.png\n", "Saving slicer 2 for patient 0000268517 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268517/slicer_19_2.png\n", "Saving slicer 3 for patient 0000268517 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268517/slicer_21_3.png\n", "Saving slicer 4 for patient 0000268517 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000268517/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000268517.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286048/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286048/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286048/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286048/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286048/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286048/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286048/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286048/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 26, 27, 28, 29]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 30\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [30] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000286048 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286048/slicer_27_1.png\n", "Saving slicer 2 for patient 0000286048 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286048/slicer_30_2.png\n", "Saving slicer 3 for patient 0000286048 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286048/slicer_27_3.png\n", "Saving slicer 4 for patient 0000286048 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286048/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000286048.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000271630/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000271630/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000271630/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000271630/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271630/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271630/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271630/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271630/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [5, 6, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000271630 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271630/slicer_13_1.png\n", "Saving slicer 2 for patient 0000271630 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271630/slicer_26_2.png\n", "Saving slicer 3 for patient 0000271630 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271630/slicer_13_3.png\n", "Saving slicer 4 for patient 0000271630 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271630/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000271630.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282817/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282817/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282817/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282817/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282817/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282817/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282817/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282817/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [23] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282817 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282817/slicer_21_1.png\n", "Saving slicer 2 for patient 0000282817 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282817/slicer_23_2.png\n", "Saving slicer 3 for patient 0000282817 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282817/slicer_21_3.png\n", "Saving slicer 4 for patient 0000282817 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282817/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000282817.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000271216/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000271216/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000271216/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000271216/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271216/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271216/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271216/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271216/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 12\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [12] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000271216 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271216/slicer_17_1.png\n", "Saving slicer 2 for patient 0000271216 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271216/slicer_12_2.png\n", "Saving slicer 3 for patient 0000271216 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271216/slicer_17_3.png\n", "Saving slicer 4 for patient 0000271216 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271216/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000271216.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000310902/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000310902/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000310902/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000310902/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310902/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310902/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310902/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310902/mask_all.nii.gz\n", "Image shape: (40, 512, 512), Mask shape: (40, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 13, 14, 15, 16, 18, 19, 20, 21, 22, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [7, 13, 14, 15, 16, 18, 19, 20, 21, 22, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [19, 20, 29, 30, 31, 32, 33, 34]\n", "After T2 ROI slices: [19, 20, 29, 30, 31, 32, 33, 34]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000310902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310902/slicer_19_1.png\n", "Saving slicer 2 for patient 0000310902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310902/slicer_21_2.png\n", "Saving slicer 3 for patient 0000310902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310902/slicer_19_3.png\n", "Saving slicer 4 for patient 0000310902 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310902/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000310902.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270116/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270116/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270116/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270116/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270116/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270116/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270116/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270116/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 5\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "Slice layer [5] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000270116 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270116/slicer_5_1.png\n", "Saving slicer 2 for patient 0000270116 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270116/slicer_20_2.png\n", "Saving slicer 3 for patient 0000270116 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270116/slicer_5_3.png\n", "Saving slicer 4 for patient 0000270116 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000270116/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000270116.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256951/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256951/mask_all.nii.gz\n", "Image shape: (34, 384, 384), Mask shape: (34, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256951/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256951/mask_all.nii.gz\n", "Image shape: (34, 384, 384), Mask shape: (34, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256951/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256951/mask_all.nii.gz\n", "Image shape: (34, 384, 384), Mask shape: (34, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256951/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256951/mask_all.nii.gz\n", "Image shape: (34, 384, 384), Mask shape: (34, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [15, 16, 19, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [15, 16, 19, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000256951 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256951/slicer_19_1.png\n", "Saving slicer 2 for patient 0000256951 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256951/slicer_22_2.png\n", "Saving slicer 3 for patient 0000256951 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256951/slicer_19_3.png\n", "Saving slicer 4 for patient 0000256951 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256951/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000256951.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293076/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293076/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293076/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293076/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293076/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293076/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293076/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293076/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293076 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293076/slicer_16_1.png\n", "Saving slicer 2 for patient 0000293076 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293076/slicer_28_2.png\n", "Saving slicer 3 for patient 0000293076 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293076/slicer_16_3.png\n", "Saving slicer 4 for patient 0000293076 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000293076/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000293076.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292781/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292781/mask_all.nii.gz\n", "Image shape: (16, 512, 512), Mask shape: (16, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292781/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292781/mask_all.nii.gz\n", "Image shape: (16, 512, 512), Mask shape: (16, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292781/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292781/mask_all.nii.gz\n", "Image shape: (16, 512, 512), Mask shape: (16, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292781/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292781/mask_all.nii.gz\n", "Image shape: (16, 512, 512), Mask shape: (16, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12]\n", "After T1 ROI slices: [6, 7, 8, 9, 10, 11, 12]\n", "After T2 ROI slices: [6, 7, 8, 9, 10, 11, 12]\n", "Random T1 slicer index chosen: 9\n", "Random T2 slicer index chosen: 10\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000292781 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292781/slicer_9_1.png\n", "Saving slicer 2 for patient 0000292781 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292781/slicer_10_2.png\n", "Saving slicer 3 for patient 0000292781 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292781/slicer_9_3.png\n", "Saving slicer 4 for patient 0000292781 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292781/slicer_10_4.png\n", "Successfully saved 4 slices for patient 0000292781.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000308240/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000308240/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000308240/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000308240/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308240/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308240/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308240/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308240/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [4, 5, 6, 7, 8, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [4, 5, 6, 7, 8, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 5\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000308240 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308240/slicer_5_1.png\n", "Saving slicer 2 for patient 0000308240 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308240/slicer_14_2.png\n", "Saving slicer 3 for patient 0000308240 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308240/slicer_5_3.png\n", "Saving slicer 4 for patient 0000308240 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308240/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000308240.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000308896/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000308896/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000308896/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000308896/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308896/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308896/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308896/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308896/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000308896 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308896/slicer_28_1.png\n", "Saving slicer 2 for patient 0000308896 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308896/slicer_17_2.png\n", "Saving slicer 3 for patient 0000308896 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308896/slicer_28_3.png\n", "Saving slicer 4 for patient 0000308896 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000308896/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000308896.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000235317/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000235317/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000235317/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000235317/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235317/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235317/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235317/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235317/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [1, 2, 3, 6, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "Before T2 ROI slices: [1, 2, 3, 6, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "After T1 ROI slices: [10, 13, 14, 15, 18, 19, 20, 21, 22, 23]\n", "After T2 ROI slices: [10, 13, 14, 15, 18, 19, 20, 21, 22, 23]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 13\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000235317 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235317/slicer_16_1.png\n", "Saving slicer 2 for patient 0000235317 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235317/slicer_13_2.png\n", "Saving slicer 3 for patient 0000235317 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235317/slicer_16_3.png\n", "Saving slicer 4 for patient 0000235317 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235317/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000235317.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267834/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267834/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267834/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267834/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267834/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267834/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267834/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267834/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 14, 15, 16, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [12, 14, 15, 16, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267834 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267834/slicer_24_1.png\n", "Saving slicer 2 for patient 0000267834 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267834/slicer_16_2.png\n", "Saving slicer 3 for patient 0000267834 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267834/slicer_24_3.png\n", "Saving slicer 4 for patient 0000267834 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267834/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000267834.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259448/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259448/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259448/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259448/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259448/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259448/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259448/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259448/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [5, 6, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000259448 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259448/slicer_25_1.png\n", "Saving slicer 2 for patient 0000259448 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259448/slicer_20_2.png\n", "Saving slicer 3 for patient 0000259448 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259448/slicer_25_3.png\n", "Saving slicer 4 for patient 0000259448 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259448/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000259448.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279653/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279653/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279653/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279653/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279653/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279653/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279653/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279653/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 11\n", "A total of 1 slices were extracted!\n", "Slice layer [14] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [11] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279653 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279653/slicer_14_1.png\n", "Saving slicer 2 for patient 0000279653 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279653/slicer_11_2.png\n", "Saving slicer 3 for patient 0000279653 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279653/slicer_14_3.png\n", "Saving slicer 4 for patient 0000279653 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279653/slicer_11_4.png\n", "Successfully saved 4 slices for patient 0000279653.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000235208/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000235208/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000235208/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000235208/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235208/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235208/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235208/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235208/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 5, 6, 7, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [3, 4, 5, 6, 7, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [4, 7, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [4, 7, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000235208 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235208/slicer_19_1.png\n", "Saving slicer 2 for patient 0000235208 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235208/slicer_25_2.png\n", "Saving slicer 3 for patient 0000235208 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235208/slicer_19_3.png\n", "Saving slicer 4 for patient 0000235208 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000235208/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000235208.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000310325/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000310325/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000310325/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000310325/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310325/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310325/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310325/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310325/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000310325 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310325/slicer_17_1.png\n", "Saving slicer 2 for patient 0000310325 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310325/slicer_15_2.png\n", "Saving slicer 3 for patient 0000310325 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310325/slicer_17_3.png\n", "Saving slicer 4 for patient 0000310325 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000310325/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000310325.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292554/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292554/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292554/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292554/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292554/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292554/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292554/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292554/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 19, 27, 28, 29, 30, 31, 32, 33, 34, 35]\n", "Before T2 ROI slices: [18, 19, 27, 28, 29, 30, 31, 32, 33, 34, 35]\n", "After T1 ROI slices: [28, 29, 30, 31, 32, 33]\n", "After T2 ROI slices: [28, 29, 30, 31, 32, 33]\n", "Random T1 slicer index chosen: 31\n", "Random T2 slicer index chosen: 35\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [35] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000292554 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292554/slicer_31_1.png\n", "Saving slicer 2 for patient 0000292554 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292554/slicer_35_2.png\n", "Saving slicer 3 for patient 0000292554 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292554/slicer_31_3.png\n", "Saving slicer 4 for patient 0000292554 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292554/slicer_35_4.png\n", "Successfully saved 4 slices for patient 0000292554.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292612/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292612/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292612/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292612/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292612/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292612/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292612/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292612/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [6, 7, 8, 9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 9\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "Slice layer [9] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000292612 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292612/slicer_9_1.png\n", "Saving slicer 2 for patient 0000292612 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292612/slicer_28_2.png\n", "Saving slicer 3 for patient 0000292612 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292612/slicer_9_3.png\n", "Saving slicer 4 for patient 0000292612 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292612/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000292612.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255821/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255821/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255821/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255821/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255821/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255821/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255821/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255821/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255821 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255821/slicer_14_1.png\n", "Saving slicer 2 for patient 0000255821 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255821/slicer_24_2.png\n", "Saving slicer 3 for patient 0000255821 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255821/slicer_14_3.png\n", "Saving slicer 4 for patient 0000255821 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000255821/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000255821.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000239657/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000239657/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000239657/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000239657/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239657/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239657/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239657/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000239657/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [15, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [17, 18, 19, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [17, 18, 19, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 30\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000239657 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239657/slicer_22_1.png\n", "Saving slicer 2 for patient 0000239657 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239657/slicer_30_2.png\n", "Saving slicer 3 for patient 0000239657 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239657/slicer_22_3.png\n", "Saving slicer 4 for patient 0000239657 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000239657/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000239657.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267124/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267124/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000267124/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000267124/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267124/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267124/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267124/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000267124/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000267124 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267124/slicer_29_1.png\n", "Saving slicer 2 for patient 0000267124 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267124/slicer_18_2.png\n", "Saving slicer 3 for patient 0000267124 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267124/slicer_29_3.png\n", "Saving slicer 4 for patient 0000267124 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000267124/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000267124.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1127846/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1127846/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1127846/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1127846/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1127846/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1127846/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1127846/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1127846/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 23, 24, 25, 26]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "Slice layer [27] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1127846 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1127846/slicer_27_1.png\n", "Saving slicer 2 for patient 00C1127846 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1127846/slicer_17_2.png\n", "Saving slicer 3 for patient 00C1127846 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1127846/slicer_27_3.png\n", "Saving slicer 4 for patient 00C1127846 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1127846/slicer_17_4.png\n", "Successfully saved 4 slices for patient 00C1127846.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254522/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254522/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254522/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254522/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254522/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254522/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254522/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254522/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [19, 20, 21, 22, 23, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [19, 20, 21, 22, 23, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [19, 20, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [19, 20, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "Slice layer [23] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000254522 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254522/slicer_23_1.png\n", "Saving slicer 2 for patient 0000254522 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254522/slicer_26_2.png\n", "Saving slicer 3 for patient 0000254522 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254522/slicer_23_3.png\n", "Saving slicer 4 for patient 0000254522 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254522/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000254522.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000271246/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000271246/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000271246/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000271246/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271246/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271246/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271246/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271246/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000271246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271246/slicer_13_1.png\n", "Saving slicer 2 for patient 0000271246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271246/slicer_21_2.png\n", "Saving slicer 3 for patient 0000271246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271246/slicer_13_3.png\n", "Saving slicer 4 for patient 0000271246 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271246/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000271246.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295728/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295728/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000295728/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000295728/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295728/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295728/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295728/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000295728/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [17, 20, 21, 27, 28, 29, 30]\n", "After T2 ROI slices: [17, 20, 21, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000295728 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295728/slicer_29_1.png\n", "Saving slicer 2 for patient 0000295728 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295728/slicer_27_2.png\n", "Saving slicer 3 for patient 0000295728 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295728/slicer_29_3.png\n", "Saving slicer 4 for patient 0000295728 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000295728/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000295728.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257061/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257061/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257061/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257061/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257061/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257061/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257061/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257061/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 11, 12, 13, 14, 15, 16, 17, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [7, 8, 9, 11, 12, 13, 14, 15, 16, 17, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [7, 8, 11, 12, 13, 14, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [7, 8, 11, 12, 13, 14, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 12\n", "Random T2 slicer index chosen: 11\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000257061 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257061/slicer_12_1.png\n", "Saving slicer 2 for patient 0000257061 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257061/slicer_11_2.png\n", "Saving slicer 3 for patient 0000257061 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257061/slicer_12_3.png\n", "Saving slicer 4 for patient 0000257061 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000257061/slicer_11_4.png\n", "Successfully saved 4 slices for patient 0000257061.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000289600/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000289600/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000289600/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000289600/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289600/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289600/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289600/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289600/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "Slice layer [27] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000289600 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289600/slicer_27_1.png\n", "Saving slicer 2 for patient 0000289600 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289600/slicer_17_2.png\n", "Saving slicer 3 for patient 0000289600 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289600/slicer_27_3.png\n", "Saving slicer 4 for patient 0000289600 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000289600/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000289600.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292857/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292857/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000292857/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000292857/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292857/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292857/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292857/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000292857/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000292857 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292857/slicer_18_1.png\n", "Saving slicer 2 for patient 0000292857 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292857/slicer_20_2.png\n", "Saving slicer 3 for patient 0000292857 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292857/slicer_18_3.png\n", "Saving slicer 4 for patient 0000292857 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000292857/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000292857.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266452/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266452/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266452/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266452/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266452/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266452/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266452/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266452/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 9\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [9] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266452/slicer_16_1.png\n", "Saving slicer 2 for patient 0000266452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266452/slicer_9_2.png\n", "Saving slicer 3 for patient 0000266452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266452/slicer_16_3.png\n", "Saving slicer 4 for patient 0000266452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000266452/slicer_9_4.png\n", "Successfully saved 4 slices for patient 0000266452.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284399/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284399/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000284399/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000284399/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284399/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284399/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284399/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000284399/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 6, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [5, 6, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [7, 12, 13, 14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [7, 12, 13, 14, 15, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000284399 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284399/slicer_22_1.png\n", "Saving slicer 2 for patient 0000284399 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284399/slicer_19_2.png\n", "Saving slicer 3 for patient 0000284399 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284399/slicer_22_3.png\n", "Saving slicer 4 for patient 0000284399 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000284399/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000284399.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000296960/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000296960/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000296960/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000296960/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296960/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296960/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296960/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000296960/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000296960 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296960/slicer_28_1.png\n", "Saving slicer 2 for patient 0000296960 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296960/slicer_23_2.png\n", "Saving slicer 3 for patient 0000296960 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296960/slicer_28_3.png\n", "Saving slicer 4 for patient 0000296960 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000296960/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000296960.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000304489/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000304489/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000304489/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000304489/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304489/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304489/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304489/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000304489/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [19, 20, 21, 22, 25, 26, 27, 28]\n", "After T2 ROI slices: [19, 20, 21, 22, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000304489 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000304489/slicer_22_1.png\n", "Saving slicer 2 for patient 0000304489 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000304489/slicer_28_2.png\n", "Saving slicer 3 for patient 0000304489 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000304489/slicer_22_3.png\n", "Saving slicer 4 for patient 0000304489 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000304489/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000304489.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000294754/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000294754/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000294754/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000294754/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294754/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294754/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294754/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000294754/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [16, 17, 18, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [16, 17, 18, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000294754 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294754/slicer_25_1.png\n", "Saving slicer 2 for patient 0000294754 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294754/slicer_16_2.png\n", "Saving slicer 3 for patient 0000294754 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294754/slicer_25_3.png\n", "Saving slicer 4 for patient 0000294754 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000294754/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000294754.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256787/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256787/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256787/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256787/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256787/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256787/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256787/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256787/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [3, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 3\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "Slice layer [3] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000256787 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256787/slicer_3_1.png\n", "Saving slicer 2 for patient 0000256787 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256787/slicer_23_2.png\n", "Saving slicer 3 for patient 0000256787 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256787/slicer_3_3.png\n", "Saving slicer 4 for patient 0000256787 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000256787/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000256787.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000291756/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000291756/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000291756/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000291756/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291756/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291756/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291756/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291756/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000291756 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291756/slicer_25_1.png\n", "Saving slicer 2 for patient 0000291756 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291756/slicer_27_2.png\n", "Saving slicer 3 for patient 0000291756 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291756/slicer_25_3.png\n", "Saving slicer 4 for patient 0000291756 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000291756/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000291756.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282344/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282344/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282344/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282344/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282344/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282344/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282344/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282344/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 12\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282344 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282344/slicer_25_1.png\n", "Saving slicer 2 for patient 0000282344 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282344/slicer_12_2.png\n", "Saving slicer 3 for patient 0000282344 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282344/slicer_25_3.png\n", "Saving slicer 4 for patient 0000282344 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000282344/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000282344.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000269109/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000269109/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000269109/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000269109/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269109/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269109/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269109/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000269109/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000269109 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269109/slicer_27_1.png\n", "Saving slicer 2 for patient 0000269109 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269109/slicer_29_2.png\n", "Saving slicer 3 for patient 0000269109 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269109/slicer_27_3.png\n", "Saving slicer 4 for patient 0000269109 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000269109/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000269109.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000306664/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000306664/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000306664/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000306664/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306664/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306664/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306664/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000306664/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [15, 16, 17, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [17, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [17, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000306664 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306664/slicer_17_1.png\n", "Saving slicer 2 for patient 0000306664 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306664/slicer_28_2.png\n", "Saving slicer 3 for patient 0000306664 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306664/slicer_17_3.png\n", "Saving slicer 4 for patient 0000306664 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000306664/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000306664.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000271099/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000271099/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000271099/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000271099/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271099/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271099/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271099/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000271099/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 8\n", "Random T2 slicer index chosen: 10\n", "A total of 1 slices were extracted!\n", "Slice layer [8] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [10] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000271099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271099/slicer_8_1.png\n", "Saving slicer 2 for patient 0000271099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271099/slicer_10_2.png\n", "Saving slicer 3 for patient 0000271099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271099/slicer_8_3.png\n", "Saving slicer 4 for patient 0000271099 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000271099/slicer_10_4.png\n", "Successfully saved 4 slices for patient 0000271099.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280694/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280694/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000280694/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000280694/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280694/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280694/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280694/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000280694/mask_all.nii.gz\n", "Image shape: (36, 370, 384), Mask shape: (36, 370, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000280694 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280694/slicer_30_1.png\n", "Saving slicer 2 for patient 0000280694 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280694/slicer_27_2.png\n", "Saving slicer 3 for patient 0000280694 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280694/slicer_30_3.png\n", "Saving slicer 4 for patient 0000280694 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000280694/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000280694.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259254/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259254/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000259254/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000259254/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259254/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259254/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259254/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000259254/mask_all.nii.gz\n", "Image shape: (38, 512, 512), Mask shape: (38, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [15, 16, 17, 18, 23, 24, 25, 26]\n", "After T2 ROI slices: [15, 16, 17, 18, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000259254 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259254/slicer_26_1.png\n", "Saving slicer 2 for patient 0000259254 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259254/slicer_19_2.png\n", "Saving slicer 3 for patient 0000259254 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259254/slicer_26_3.png\n", "Saving slicer 4 for patient 0000259254 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000259254/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000259254.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286515/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286515/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286515/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286515/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286515/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286515/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286515/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286515/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 25, 26, 27, 28]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 12\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000286515 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286515/slicer_28_1.png\n", "Saving slicer 2 for patient 0000286515 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286515/slicer_12_2.png\n", "Saving slicer 3 for patient 0000286515 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286515/slicer_28_3.png\n", "Saving slicer 4 for patient 0000286515 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000286515/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000286515.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274463/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274463/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000274463/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000274463/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274463/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274463/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274463/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000274463/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [15, 16, 17, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [15, 16, 17, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "Slice layer [24] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000274463 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274463/slicer_24_1.png\n", "Saving slicer 2 for patient 0000274463 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274463/slicer_21_2.png\n", "Saving slicer 3 for patient 0000274463 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274463/slicer_24_3.png\n", "Saving slicer 4 for patient 0000274463 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000274463/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000274463.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000241781/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000241781/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000241781/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000241781/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241781/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241781/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241781/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241781/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000241781 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000241781/slicer_29_1.png\n", "Saving slicer 2 for patient 0000241781 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000241781/slicer_25_2.png\n", "Saving slicer 3 for patient 0000241781 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000241781/slicer_29_3.png\n", "Saving slicer 4 for patient 0000241781 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000241781/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000241781.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1130980/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1130980/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1130980/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1130980/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1130980/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1130980/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1130980/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1130980/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [19, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [19, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1130980 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1130980/slicer_19_1.png\n", "Saving slicer 2 for patient 00C1130980 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1130980/slicer_21_2.png\n", "Saving slicer 3 for patient 00C1130980 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1130980/slicer_19_3.png\n", "Saving slicer 4 for patient 00C1130980 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/00C1130980/slicer_21_4.png\n", "Successfully saved 4 slices for patient 00C1130980.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298059/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298059/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000298059/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000298059/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298059/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298059/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298059/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000298059/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [14, 15, 19, 25, 26, 27, 28]\n", "After T2 ROI slices: [14, 15, 19, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000298059 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298059/slicer_14_1.png\n", "Saving slicer 2 for patient 0000298059 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298059/slicer_22_2.png\n", "Saving slicer 3 for patient 0000298059 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298059/slicer_14_3.png\n", "Saving slicer 4 for patient 0000298059 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000298059/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000298059.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000247283/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000247283/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000247283/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000247283/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247283/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247283/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247283/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000247283/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [10, 16, 17, 18, 19, 20, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [10, 16, 17, 18, 19, 20, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000247283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247283/slicer_26_1.png\n", "Saving slicer 2 for patient 0000247283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247283/slicer_18_2.png\n", "Saving slicer 3 for patient 0000247283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247283/slicer_26_3.png\n", "Saving slicer 4 for patient 0000247283 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000247283/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000247283.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302628/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302628/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302628/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302628/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302628/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302628/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302628/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302628/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 19, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [14, 15, 16, 17, 19, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [19, 20, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [19, 20, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [25] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302628 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302628/slicer_21_1.png\n", "Saving slicer 2 for patient 0000302628 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302628/slicer_25_2.png\n", "Saving slicer 3 for patient 0000302628 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302628/slicer_21_3.png\n", "Saving slicer 4 for patient 0000302628 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000302628/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000302628.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279054/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279054/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279054/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279054/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279054/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279054/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279054/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279054/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [1, 2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [1, 2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279054 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279054/slicer_16_1.png\n", "Saving slicer 2 for patient 0000279054 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279054/slicer_21_2.png\n", "Saving slicer 3 for patient 0000279054 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279054/slicer_16_3.png\n", "Saving slicer 4 for patient 0000279054 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000279054/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000279054.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248696/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248696/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248696/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248696/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248696/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248696/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248696/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248696/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [8, 9, 11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248696 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248696/slicer_16_1.png\n", "Saving slicer 2 for patient 0000248696 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248696/slicer_28_2.png\n", "Saving slicer 3 for patient 0000248696 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248696/slicer_16_3.png\n", "Saving slicer 4 for patient 0000248696 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000248696/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000248696.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254728/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254728/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254728/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254728/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254728/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254728/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254728/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254728/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 15, 16, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [12, 15, 16, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000254728 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254728/slicer_29_1.png\n", "Saving slicer 2 for patient 0000254728 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254728/slicer_26_2.png\n", "Saving slicer 3 for patient 0000254728 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254728/slicer_29_3.png\n", "Saving slicer 4 for patient 0000254728 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000254728/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000254728.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000251256/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000251256/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000251256/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000251256/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251256/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251256/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251256/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251256/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [2, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [2, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 3\n", "Random T2 slicer index chosen: 10\n", "A total of 1 slices were extracted!\n", "Slice layer [3] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000251256 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000251256/slicer_3_1.png\n", "Saving slicer 2 for patient 0000251256 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000251256/slicer_10_2.png\n", "Saving slicer 3 for patient 0000251256 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000251256/slicer_3_3.png\n", "Saving slicer 4 for patient 0000251256 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_666_4_negtive/0000251256/slicer_10_4.png\n", "Successfully saved 4 slices for patient 0000251256.\n", "\n" ] } ], "source": [ "#处理训练集阴性样本661 \n", "\n", "import os\n", "import SimpleITK as sitk\n", "import numpy as np\n", "import random\n", "import matplotlib.pyplot as plt\n", "import nibabel as nib\n", "from skimage.transform import resize\n", "from matplotlib import patches\n", "import cv2\n", "\n", "def load_images(image_path, mask_path):\n", " # 检查文件是否存在\n", " if not os.path.exists(image_path):\n", " raise FileNotFoundError(f\"Original MRI file not found: {image_path}\")\n", " if not os.path.exists(mask_path):\n", " raise FileNotFoundError(f\"ROI mask file not found: {mask_path}\")\n", " \n", " # 读取原始MRI图像和mask文件\n", " print(f\"Loading image from: {image_path}\")\n", " image = sitk.ReadImage(image_path) \n", " print(f\"Loading mask from: {mask_path}\")\n", " mask = sitk.ReadImage(mask_path)\n", "\n", " # 转换为数组\n", " image_array = sitk.GetArrayFromImage(image)\n", " mask_array = sitk.GetArrayFromImage(mask)\n", "\n", " print(f\"Image shape: {image_array.shape}, Mask shape: {mask_array.shape}\")\n", "\n", " return image_array, mask_array\n", "\n", "def get_roi_slicers_index(mask_array):\n", " # 获取包含ROI的层索引\n", " print(f\"Getting ROI slicers index...\")\n", " roi_slicers_index = [i for i in range(mask_array.shape[0]) if np.any(mask_array[i])]\n", "\n", " if not roi_slicers_index:\n", " print(\"No layers containing ROI, ending operation!\")\n", " return []\n", " \n", " return roi_slicers_index\n", "def save_slicers(base_output_dir, patient_id, slicer, slicer_index, slicer_number):\n", " # 在base_output_dir下创建每个病人的目录\n", " patient_dir = os.path.join(base_output_dir,patient_id)\n", " os.makedirs(patient_dir, exist_ok=True)\n", "\n", " slicer = np.asarray(slicer)\n", " # 去除维度为1的维度\n", " slicer = np.squeeze(slicer)\n", "\n", " file_name = f\"slicer_{slicer_index}_{slicer_number}.png\"\n", " file_path = os.path.join(patient_dir, file_name)\n", "\n", " print(f\"Saving slicer {slicer_number} for patient {patient_id} at {file_path}\")\n", "\n", " # 保存图像\n", " fig, ax = plt.subplots() \n", " ax.imshow(slicer, cmap='gray') # 显示对应切片\n", " ax.axis('off') # 关闭坐标轴\n", " plt.tight_layout()\n", "\n", " # 保存切片为图像文件，去掉白色背景\n", " fig.savefig(file_path, bbox_inches='tight', pad_inches=0, transparent=True)\n", " plt.close(fig) # 关闭图像\n", " \n", "\n", "def extract_roi_slicers(image_array,mask_array, roi_slicers_index): \n", " # 提取包含ROI的切片\n", " roi_slicers = []\n", " \n", " original_image = image_array[roi_slicers_index, :, :].astype(np.float16)\n", "\n", " # 检查层数据是否为空\n", " if np.max(mask_array[roi_slicers_index]) == 0:\n", " print(f\"Slice layer {roi_slicers_index} is all 0, skipping extraction!\")\n", " original_image = image_array[roi_slicers_index]\n", " \n", " roi_slicers.append(original_image)\n", "\n", " print(f\"A total of {len(roi_slicers)} slices were extracted!\")\n", "\n", " return roi_slicers #会返回只有一个元素的list ，取出这个元素即可\n", "\n", "\n", "def process_patient_data(base_dir, patient_folder, base_output_dir):\n", " patient_id = os.path.basename(patient_folder)\n", "\n", " # 指定患者数据\n", " before_image_path_t1 = os.path.join(base_dir, 'Before', patient_folder, 'T1.nii.gz')\n", " before_image_path_t2 = os.path.join(base_dir, 'Before', patient_folder, 'T2.nii.gz')\n", " before_mask_path = os.path.join(base_dir, 'Before', patient_folder, 'mask_all.nii.gz')\n", "\n", " after_image_path_t1 = os.path.join(base_dir, 'After_registed', patient_folder, 'T1.nii.gz')\n", " after_image_path_t2 = os.path.join(base_dir, 'After_registed', patient_folder, 'T2.nii.gz') \n", " after_mask_path = os.path.join(base_dir, 'After_registed', patient_folder, 'mask_all.nii.gz')\n", " \n", " try:\n", " # 加载患者数据\n", " before_image_array_t1, before_mask_array = load_images(before_image_path_t1, before_mask_path)\n", " before_image_array_t2, _ = load_images(before_image_path_t2, before_mask_path)\n", "\n", " after_image_array_t1, after_mask_array = load_images(after_image_path_t1, after_mask_path)\n", " after_image_array_t2, _ = load_images(after_image_path_t2, after_mask_path)\n", " except FileNotFoundError as e:\n", " print(f\"Error: {e}\") # 打印错误信息\n", " return # 跳过当前病人的处理\n", " except Exception as e:\n", " print(f\"Unexpected error: {e}\")\n", " return\n", "\n", " # 获取包含ROI的层索引\n", " before_T1_ROI_slicers_index = get_roi_slicers_index(before_mask_array)\n", " before_T2_ROI_slicers_index = get_roi_slicers_index(before_mask_array)\n", "\n", " after_T1_ROI_slicers_index = get_roi_slicers_index(after_mask_array)\n", " after_T2_ROI_slicers_index = get_roi_slicers_index(after_mask_array)\n", "\n", " print(f\"Before T1 ROI slices: {before_T1_ROI_slicers_index}\")\n", " print(f\"Before T2 ROI slices: {before_T2_ROI_slicers_index}\")\n", "\n", " print(f\"After T1 ROI slices: {after_T1_ROI_slicers_index}\")\n", " print(f\"After T2 ROI slices: {after_T2_ROI_slicers_index}\")\n", "\n", "\n", " # 在治疗前包含ROI的索引中随机抽取一个，对应的在治疗后抽取该索引，并提取这两个切片\n", " random_before_T1_slicer_index = random.choice(before_T1_ROI_slicers_index)\n", " random_before_T2_slicer_index = random.choice(before_T2_ROI_slicers_index)\n", "\n", " print(f\"Random T1 slicer index chosen: {random_before_T1_slicer_index}\")\n", " print(f\"Random T2 slicer index chosen: {random_before_T2_slicer_index}\")\n", "\n", " # 提取所选索引所对应的切片 T1\n", " random_before_T1_slicer = extract_roi_slicers(before_image_array_t1,before_mask_array, [random_before_T1_slicer_index])[0]\n", " # 提取对应索引的治疗后的切片\n", " after_T1_slicer = extract_roi_slicers(after_image_array_t1,after_mask_array, [random_before_T1_slicer_index])[0]\n", "\n", " # 提取 T2 切片\n", " random_before_T2_slicer = extract_roi_slicers(before_image_array_t2,before_mask_array, [random_before_T2_slicer_index])[0]\n", " after_T2_slicer = extract_roi_slicers(after_image_array_t2, after_mask_array,[random_before_T2_slicer_index])[0]\n", "\n", " \n", " # 保存切片\n", " save_slicers(base_output_dir, patient_id, random_before_T1_slicer, random_before_T1_slicer_index, slicer_number=1)\n", " save_slicers(base_output_dir, patient_id, random_before_T2_slicer, random_before_T2_slicer_index, slicer_number=2)\n", "\n", " save_slicers(base_output_dir, patient_id, after_T1_slicer, random_before_T1_slicer_index, slicer_number=3)\n", " save_slicers(base_output_dir, patient_id, after_T2_slicer, random_before_T2_slicer_index, slicer_number=4)\n", "\n", " # 检查是否保存了 4 个切片\n", " saved_slicers = [f for f in os.listdir(os.path.join(base_output_dir, patient_id)) if f.endswith('.png')]\n", " \n", " if len(saved_slicers) != 4:\n", " print(f\"Error: Patient {patient_id} saved {len(saved_slicers)} slices. Expected 4 slices. Exiting process.\")\n", " return #跳过该病人的处理\n", " \n", " print(f\"Successfully saved 4 slices for patient {patient_id}.\\n\")\n", "\n", "\n", "\n", "def main():\n", " base_dir = '/home/xtm/kyr_data/original_data/combined' #原始文件路径\n", " base_output_dir = '/home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_661_4_negtive'\n", " patient_slice_count = {}\n", " \n", " # 获取需要处理的病人ID列表\n", " patient_ids_to_process_negative = candidate_train_negtive['ID'].tolist() # 从DataFrame的ID列中获取病人ID列表\n", "\n", " patient_folders = [f for f in os.listdir(os.path.join(base_dir, 'Before')) if os.path.isdir(os.path.join(base_dir, 'Before', f)) and f in patient_ids_to_process_negative]\n", " print(len(patient_folders)) \n", " \n", " for patient_id in patient_folders:\n", " process_patient_data(base_dir, patient_id, base_output_dir)\n", " \n", " for patient_id, count in patient_slice_count.items():\n", " if count != 4:\n", " print(f\"Patient {patient_id}: {count} slices\")\n", " \n", "\n", 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'/home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_combine_661_negtive'\n", "#遍历病人目录\n", "\n", "for patient_dir in os.listdir(base_dir):\n", " patient_path = os.path.join(base_dir,patient_dir)\n", "\n", " #确保是一个目录\n", " if os.path.isdir (patient_path):\n", " #按照编号来找图片\n", " png_paths = {}\n", "\n", " for file_name in os.listdir(patient_path):\n", " if file_name.endswith('.png') and \"slicer\" in file_name:\n", " #提取文件中的最后数字部分来生成路径\n", " parts = file_name.split('_')\n", " if len(parts)==3:\n", " png_number = int(parts[2].split('.')[0]) #获取最后一个数字\n", " png_paths[png_number] = os.path.join(patient_path,file_name) \n", "\n", " #检查是否找到了四张png\n", " if len(png_paths)==4 and all(i in png_paths for i in range(1,5)):\n", "\n", " #打开所有图片\n", " pngs = [Image.open(png_paths[i]) for i in range(1,5)] #返回图片对此昂，并储存在pngs列表中\n", "\n", " #获取图片模式\n", " mode = pngs[0].mode\n", "\n", " #获取任意一张图片的图片的宽度和高度\n", " widths,heights = pngs[0].size\n", "\n", "\n", " #创建新的大图 2*2\n", " combination_width = widths * 2 \n", " combination_height = heights * 2\n", "\n", " #创建空白的png 保持原始图片的模式\n", " combination_image = Image.new(mode, (combination_width,combination_height))\n", "\n", " #将图片放到大图上\n", " combination_image.paste(pngs[0],(0,0)) # 第一张图片放在左上角\n", " combination_image.paste(pngs[2],(widths,0))# 第三张图片放在右上角\n", " combination_image.paste(pngs[1],(0,heights)) # 第二张图片放在左下角\n", " combination_image.paste(pngs[3],(widths,heights)) # 第四张图片放在右下角\n", "\n", " #创建输出目录\n", " output_dir = os.path.join(output_base_dir,patient_dir)\n", " os.makedirs(output_dir,exist_ok=True)\n", "\n", " #保存组合后的图片\n", " output_path = os.path.join(output_dir, f\"{patient_dir}.png\")\n", " combination_image.save(output_path)\n", "\n", " print(f'successfully: {output_path}')\n", " else:\n", " print(f'patient {patient_dir} is less picture,skipping.')" ] }, { "cell_type": "code", "execution_count": 12, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "目录合并完成。\n" ] } ], "source": [ "#合并阴阳样本为训练集 1327\n", "import os\n", "import shutil\n", "\n", "source_dir1 = '/home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_combine_661_negtive'\n", "source_dir2 = '/home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_combine_666__positive' # 假设这里实际是另一个不同的目录\n", "target_dir = '/home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_1:1_1327'\n", "\n", "def merge_directories(source_dir, target_dir):\n", " if not os.path.exists(target_dir):\n", " os.makedirs(target_dir)\n", "\n", " for root, dirs, files in os.walk(source_dir):\n", " # 计算相对路径\n", " relative_path = os.path.relpath(root, source_dir)\n", " target_sub_dir = os.path.join(target_dir, relative_path)\n", "\n", " # 创建目标子目录\n", " if not os.path.exists(target_sub_dir):\n", " os.makedirs(target_sub_dir)\n", "\n", " # 复制文件\n", " for file in files:\n", " source_file_path = os.path.join(root, file)\n", " target_file_path = os.path.join(target_sub_dir, file)\n", " shutil.copy2(source_file_path, target_file_path)\n", "\n", "# 合并第一个源目录\n", "merge_directories(source_dir1, target_dir)\n", "# 合并第二个源目录\n", "merge_directories(source_dir2, target_dir)\n", "\n", "print(\"目录合并完成。\")" ] }, { "cell_type": "code", "execution_count": 6, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "80\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293545/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293545/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293545/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293545/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293545/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293545/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293545/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293545/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [14, 15, 16, 17, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [23, 24, 25, 26]\n", "After T2 ROI slices: [23, 24, 25, 26]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293545 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000293545/slicer_17_1.png\n", "Saving slicer 2 for patient 0000293545 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000293545/slicer_16_2.png\n", "Saving slicer 3 for patient 0000293545 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000293545/slicer_17_3.png\n", "Saving slicer 4 for patient 0000293545 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000293545/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000293545.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000276653/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000276653/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000276653/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000276653/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276653/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276653/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276653/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276653/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [15, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000276653 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000276653/slicer_25_1.png\n", "Saving slicer 2 for patient 0000276653 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000276653/slicer_29_2.png\n", "Saving slicer 3 for patient 0000276653 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000276653/slicer_25_3.png\n", "Saving slicer 4 for patient 0000276653 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000276653/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000276653.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272983/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272983/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272983/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272983/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272983/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272983/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272983/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272983/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [10, 11, 12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000272983 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000272983/slicer_25_1.png\n", "Saving slicer 2 for patient 0000272983 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000272983/slicer_17_2.png\n", "Saving slicer 3 for patient 0000272983 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000272983/slicer_25_3.png\n", "Saving slicer 4 for patient 0000272983 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000272983/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000272983.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257744/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257744/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257744/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257744/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257744/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257744/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257744/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257744/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000257744 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000257744/slicer_26_1.png\n", "Saving slicer 2 for patient 0000257744 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000257744/slicer_26_2.png\n", "Saving slicer 3 for patient 0000257744 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000257744/slicer_26_3.png\n", "Saving slicer 4 for patient 0000257744 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000257744/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000257744.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1117114/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1117114/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1117114/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1117114/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1117114/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1117114/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1117114/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1117114/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [14, 17, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [14, 17, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 11\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [11] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1117114 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/00C1117114/slicer_22_1.png\n", "Saving slicer 2 for patient 00C1117114 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/00C1117114/slicer_11_2.png\n", "Saving slicer 3 for patient 00C1117114 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/00C1117114/slicer_22_3.png\n", "Saving slicer 4 for patient 00C1117114 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/00C1117114/slicer_11_4.png\n", "Successfully saved 4 slices for patient 00C1117114.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286008/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286008/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000286008/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000286008/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286008/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286008/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286008/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000286008/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000286008 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000286008/slicer_21_1.png\n", "Saving slicer 2 for patient 0000286008 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000286008/slicer_16_2.png\n", "Saving slicer 3 for patient 0000286008 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000286008/slicer_21_3.png\n", "Saving slicer 4 for patient 0000286008 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000286008/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000286008.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256588/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256588/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256588/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256588/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256588/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256588/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256588/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256588/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [14] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000256588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000256588/slicer_15_1.png\n", "Saving slicer 2 for patient 0000256588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000256588/slicer_14_2.png\n", "Saving slicer 3 for patient 0000256588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000256588/slicer_15_3.png\n", "Saving slicer 4 for patient 0000256588 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000256588/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000256588.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000260961/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000260961/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000260961/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000260961/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260961/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260961/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260961/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260961/mask_all.nii.gz\n", "Image shape: (32, 320, 320), Mask shape: (32, 320, 320)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000260961 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000260961/slicer_24_1.png\n", "Saving slicer 2 for patient 0000260961 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000260961/slicer_21_2.png\n", "Saving slicer 3 for patient 0000260961 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000260961/slicer_24_3.png\n", "Saving slicer 4 for patient 0000260961 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000260961/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000260961.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000310327/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000310327/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000310327/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000310327/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310327/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310327/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310327/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000310327/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000310327 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000310327/slicer_20_1.png\n", "Saving slicer 2 for patient 0000310327 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000310327/slicer_28_2.png\n", "Saving slicer 3 for patient 0000310327 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000310327/slicer_20_3.png\n", "Saving slicer 4 for patient 0000310327 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000310327/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000310327.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000253700/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000253700/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000253700/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000253700/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253700/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253700/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253700/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000253700/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [0, 1, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [0, 1, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [1, 5, 6, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [1, 5, 6, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 12\n", "Random T2 slicer index chosen: 28\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000253700 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000253700/slicer_12_1.png\n", "Saving slicer 2 for patient 0000253700 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000253700/slicer_28_2.png\n", "Saving slicer 3 for patient 0000253700 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000253700/slicer_12_3.png\n", "Saving slicer 4 for patient 0000253700 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000253700/slicer_28_4.png\n", "Successfully saved 4 slices for patient 0000253700.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302413/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302413/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000302413/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000302413/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302413/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302413/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302413/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000302413/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [15, 16, 17, 18, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [17, 18, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [17, 18, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000302413 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000302413/slicer_29_1.png\n", "Saving slicer 2 for patient 0000302413 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000302413/slicer_24_2.png\n", "Saving slicer 3 for patient 0000302413 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000302413/slicer_29_3.png\n", "Saving slicer 4 for patient 0000302413 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000302413/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000302413.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283452/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283452/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283452/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283452/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283452/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283452/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283452/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283452/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000283452/slicer_19_1.png\n", "Saving slicer 2 for patient 0000283452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000283452/slicer_16_2.png\n", "Saving slicer 3 for patient 0000283452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000283452/slicer_19_3.png\n", "Saving slicer 4 for patient 0000283452 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000283452/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000283452.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000238501/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000238501/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000238501/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000238501/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000238501/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000238501/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000238501/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000238501/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [0, 2, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Before T2 ROI slices: [0, 2, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 18, 19, 21, 22, 23]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 18, 19, 21, 22, 23]\n", "Random T1 slicer index chosen: 7\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "Slice layer [7] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238501 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000238501/slicer_7_1.png\n", "Saving slicer 2 for patient 0000238501 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000238501/slicer_14_2.png\n", "Saving slicer 3 for patient 0000238501 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000238501/slicer_7_3.png\n", "Saving slicer 4 for patient 0000238501 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000238501/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000238501.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000243961/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000243961/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000243961/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000243961/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243961/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243961/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243961/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000243961/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [5, 6, 7, 8, 9, 10, 13, 14, 15, 16, 17, 18, 23, 24, 25, 26]\n", "After T2 ROI slices: [5, 6, 7, 8, 9, 10, 13, 14, 15, 16, 17, 18, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 8\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000243961 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000243961/slicer_23_1.png\n", "Saving slicer 2 for patient 0000243961 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000243961/slicer_8_2.png\n", "Saving slicer 3 for patient 0000243961 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000243961/slicer_23_3.png\n", "Saving slicer 4 for patient 0000243961 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000243961/slicer_8_4.png\n", "Successfully saved 4 slices for patient 0000243961.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000234079/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000234079/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000234079/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000234079/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000234079/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000234079/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000234079/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000234079/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000234079 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000234079/slicer_24_1.png\n", "Saving slicer 2 for patient 0000234079 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000234079/slicer_27_2.png\n", "Saving slicer 3 for patient 0000234079 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000234079/slicer_24_3.png\n", "Saving slicer 4 for patient 0000234079 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000234079/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000234079.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000311990/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000311990/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000311990/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000311990/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000311990/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000311990/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000311990/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000311990/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [3, 4, 5, 6, 8, 9, 10, 11, 12, 13, 15, 16, 17, 18, 19, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [3, 4, 5, 6, 8, 9, 10, 11, 12, 13, 15, 16, 17, 18, 19, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000311990 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000311990/slicer_28_1.png\n", "Saving slicer 2 for patient 0000311990 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000311990/slicer_20_2.png\n", "Saving slicer 3 for patient 0000311990 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000311990/slicer_28_3.png\n", "Saving slicer 4 for patient 0000311990 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000311990/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000311990.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000301256/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000301256/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000301256/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000301256/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301256/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301256/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301256/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301256/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 8\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "Slice layer [8] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000301256 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000301256/slicer_8_1.png\n", "Saving slicer 2 for patient 0000301256 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000301256/slicer_18_2.png\n", "Saving slicer 3 for patient 0000301256 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000301256/slicer_8_3.png\n", "Saving slicer 4 for patient 0000301256 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000301256/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000301256.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000275292/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000275292/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000275292/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000275292/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275292/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275292/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275292/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275292/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 8\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [8] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275292 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000275292/slicer_26_1.png\n", "Saving slicer 2 for patient 0000275292 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000275292/slicer_8_2.png\n", "Saving slicer 3 for patient 0000275292 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000275292/slicer_26_3.png\n", "Saving slicer 4 for patient 0000275292 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000275292/slicer_8_4.png\n", "Successfully saved 4 slices for patient 0000275292.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248143/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248143/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000248143/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000248143/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248143/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248143/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248143/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000248143/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000248143 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000248143/slicer_15_1.png\n", "Saving slicer 2 for patient 0000248143 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000248143/slicer_27_2.png\n", "Saving slicer 3 for patient 0000248143 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000248143/slicer_15_3.png\n", "Saving slicer 4 for patient 0000248143 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000248143/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000248143.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287271/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287271/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000287271/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000287271/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287271/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287271/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287271/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000287271/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 5, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [3, 5, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [10, 11, 12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [10, 11, 12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000287271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000287271/slicer_21_1.png\n", "Saving slicer 2 for patient 0000287271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000287271/slicer_25_2.png\n", "Saving slicer 3 for patient 0000287271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000287271/slicer_21_3.png\n", "Saving slicer 4 for patient 0000287271 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000287271/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000287271.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293352/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293352/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000293352/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000293352/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293352/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293352/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293352/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000293352/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [15, 16, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 31\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [23] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000293352 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000293352/slicer_31_1.png\n", "Saving slicer 2 for patient 0000293352 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000293352/slicer_23_2.png\n", "Saving slicer 3 for patient 0000293352 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000293352/slicer_31_3.png\n", "Saving slicer 4 for patient 0000293352 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000293352/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000293352.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000244125/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000244125/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000244125/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000244125/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244125/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244125/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244125/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000244125/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [7, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000244125 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000244125/slicer_13_1.png\n", "Saving slicer 2 for patient 0000244125 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000244125/slicer_24_2.png\n", "Saving slicer 3 for patient 0000244125 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000244125/slicer_13_3.png\n", "Saving slicer 4 for patient 0000244125 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000244125/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000244125.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256403/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256403/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256403/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256403/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256403/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256403/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256403/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256403/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 17, 18, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [9, 10, 17, 18, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 32\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "Slice layer [32] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [17] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000256403 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000256403/slicer_32_1.png\n", "Saving slicer 2 for patient 0000256403 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000256403/slicer_17_2.png\n", "Saving slicer 3 for patient 0000256403 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000256403/slicer_32_3.png\n", "Saving slicer 4 for patient 0000256403 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000256403/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000256403.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249999/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249999/mask_all.nii.gz\n", "Image shape: (36, 480, 480), Mask shape: (36, 480, 480)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249999/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249999/mask_all.nii.gz\n", "Image shape: (36, 480, 480), Mask shape: (36, 480, 480)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249999/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249999/mask_all.nii.gz\n", "Image shape: (36, 480, 480), Mask shape: (36, 480, 480)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249999/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249999/mask_all.nii.gz\n", "Image shape: (36, 480, 480), Mask shape: (36, 480, 480)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 26\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249999 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000249999/slicer_26_1.png\n", "Saving slicer 2 for patient 0000249999 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000249999/slicer_21_2.png\n", "Saving slicer 3 for patient 0000249999 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000249999/slicer_26_3.png\n", "Saving slicer 4 for patient 0000249999 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000249999/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000249999.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256896/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256896/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000256896/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000256896/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256896/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256896/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256896/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000256896/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [8, 9, 10, 11, 12, 14, 15, 16, 17, 18, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [8, 9, 10, 11, 12, 14, 15, 16, 17, 18, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 9\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000256896 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000256896/slicer_16_1.png\n", "Saving slicer 2 for patient 0000256896 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000256896/slicer_9_2.png\n", "Saving slicer 3 for patient 0000256896 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000256896/slicer_16_3.png\n", "Saving slicer 4 for patient 0000256896 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000256896/slicer_9_4.png\n", "Successfully saved 4 slices for patient 0000256896.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000252915/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000252915/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000252915/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000252915/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252915/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252915/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252915/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000252915/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 31\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000252915 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000252915/slicer_31_1.png\n", "Saving slicer 2 for patient 0000252915 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000252915/slicer_26_2.png\n", "Saving slicer 3 for patient 0000252915 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000252915/slicer_31_3.png\n", "Saving slicer 4 for patient 0000252915 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000252915/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000252915.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000289330/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000289330/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000289330/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000289330/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289330/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289330/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289330/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000289330/mask_all.nii.gz\n", "Image shape: (36, 352, 352), Mask shape: (36, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 10\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000289330 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000289330/slicer_15_1.png\n", "Saving slicer 2 for patient 0000289330 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000289330/slicer_10_2.png\n", "Saving slicer 3 for patient 0000289330 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000289330/slicer_15_3.png\n", "Saving slicer 4 for patient 0000289330 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000289330/slicer_10_4.png\n", "Successfully saved 4 slices for patient 0000289330.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000261070/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000261070/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000261070/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000261070/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261070/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261070/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261070/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261070/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [14, 15, 19, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [14, 15, 19, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 13\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000261070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000261070/slicer_16_1.png\n", "Saving slicer 2 for patient 0000261070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000261070/slicer_13_2.png\n", "Saving slicer 3 for patient 0000261070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000261070/slicer_16_3.png\n", "Saving slicer 4 for patient 0000261070 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000261070/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000261070.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000237233/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000237233/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000237233/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000237233/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237233/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237233/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237233/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237233/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 31\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237233 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000237233/slicer_21_1.png\n", "Saving slicer 2 for patient 0000237233 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000237233/slicer_31_2.png\n", "Saving slicer 3 for patient 0000237233 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000237233/slicer_21_3.png\n", "Saving slicer 4 for patient 0000237233 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000237233/slicer_31_4.png\n", "Successfully saved 4 slices for patient 0000237233.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282638/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282638/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000282638/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000282638/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282638/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282638/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282638/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000282638/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [11, 12, 14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [17, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [18] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000282638 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000282638/slicer_29_1.png\n", "Saving slicer 2 for patient 0000282638 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000282638/slicer_18_2.png\n", "Saving slicer 3 for patient 0000282638 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000282638/slicer_29_3.png\n", "Saving slicer 4 for patient 0000282638 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000282638/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000282638.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249641/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249641/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249641/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249641/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249641/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249641/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249641/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249641/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249641 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000249641/slicer_13_1.png\n", "Saving slicer 2 for patient 0000249641 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000249641/slicer_20_2.png\n", "Saving slicer 3 for patient 0000249641 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000249641/slicer_13_3.png\n", "Saving slicer 4 for patient 0000249641 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000249641/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000249641.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000265976/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000265976/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000265976/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000265976/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265976/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265976/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265976/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265976/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265976 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000265976/slicer_18_1.png\n", "Saving slicer 2 for patient 0000265976 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000265976/slicer_27_2.png\n", "Saving slicer 3 for patient 0000265976 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000265976/slicer_18_3.png\n", "Saving slicer 4 for patient 0000265976 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000265976/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000265976.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000275617/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000275617/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000275617/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000275617/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275617/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275617/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275617/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000275617/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [8, 9, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [8, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "After T2 ROI slices: [8, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000275617 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000275617/slicer_23_1.png\n", "Saving slicer 2 for patient 0000275617 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000275617/slicer_17_2.png\n", "Saving slicer 3 for patient 0000275617 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000275617/slicer_23_3.png\n", "Saving slicer 4 for patient 0000275617 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000275617/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000275617.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000307952/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000307952/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000307952/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000307952/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307952/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307952/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307952/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307952/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [14] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000307952 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000307952/slicer_18_1.png\n", "Saving slicer 2 for patient 0000307952 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000307952/slicer_14_2.png\n", "Saving slicer 3 for patient 0000307952 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000307952/slicer_18_3.png\n", "Saving slicer 4 for patient 0000307952 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000307952/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000307952.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000251188/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000251188/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000251188/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000251188/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251188/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251188/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251188/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251188/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 30\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [30] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000251188 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000251188/slicer_24_1.png\n", "Saving slicer 2 for patient 0000251188 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000251188/slicer_30_2.png\n", "Saving slicer 3 for patient 0000251188 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000251188/slicer_24_3.png\n", "Saving slicer 4 for patient 0000251188 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000251188/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000251188.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268787/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268787/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000268787/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000268787/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268787/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268787/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268787/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000268787/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [0, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [0, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "Slice layer [23] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000268787 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000268787/slicer_23_1.png\n", "Saving slicer 2 for patient 0000268787 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000268787/slicer_22_2.png\n", "Saving slicer 3 for patient 0000268787 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000268787/slicer_23_3.png\n", "Saving slicer 4 for patient 0000268787 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000268787/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000268787.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263289/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263289/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000263289/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000263289/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263289/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263289/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263289/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000263289/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 22\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000263289 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000263289/slicer_27_1.png\n", "Saving slicer 2 for patient 0000263289 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000263289/slicer_22_2.png\n", "Saving slicer 3 for patient 0000263289 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000263289/slicer_27_3.png\n", "Saving slicer 4 for patient 0000263289 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000263289/slicer_22_4.png\n", "Successfully saved 4 slices for patient 0000263289.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270078/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270078/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270078/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270078/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270078/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270078/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270078/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270078/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [12, 13, 14, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [12, 13, 14, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 10\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [10] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000270078 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000270078/slicer_19_1.png\n", "Saving slicer 2 for patient 0000270078 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000270078/slicer_10_2.png\n", "Saving slicer 3 for patient 0000270078 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000270078/slicer_19_3.png\n", "Saving slicer 4 for patient 0000270078 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000270078/slicer_10_4.png\n", "Successfully saved 4 slices for patient 0000270078.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249701/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249701/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000249701/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000249701/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249701/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249701/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249701/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000249701/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34]\n", "After T1 ROI slices: [14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 12\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "Slice layer [12] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000249701 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000249701/slicer_12_1.png\n", "Saving slicer 2 for patient 0000249701 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000249701/slicer_29_2.png\n", "Saving slicer 3 for patient 0000249701 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000249701/slicer_12_3.png\n", "Saving slicer 4 for patient 0000249701 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000249701/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000249701.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281903/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281903/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281903/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281903/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281903/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281903/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281903/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281903/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000281903 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000281903/slicer_21_1.png\n", "Saving slicer 2 for patient 0000281903 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000281903/slicer_27_2.png\n", "Saving slicer 3 for patient 0000281903 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000281903/slicer_21_3.png\n", "Saving slicer 4 for patient 0000281903 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000281903/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000281903.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000246031/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000246031/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000246031/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000246031/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246031/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246031/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246031/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000246031/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [8, 9, 13, 14, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [8, 9, 13, 14, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 12\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [12] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000246031 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000246031/slicer_14_1.png\n", "Saving slicer 2 for patient 0000246031 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000246031/slicer_12_2.png\n", "Saving slicer 3 for patient 0000246031 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000246031/slicer_14_3.png\n", "Saving slicer 4 for patient 0000246031 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000246031/slicer_12_4.png\n", "Successfully saved 4 slices for patient 0000246031.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000251634/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000251634/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000251634/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000251634/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251634/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251634/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251634/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000251634/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [13, 14, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [13, 14, 16, 17, 18, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000251634 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000251634/slicer_23_1.png\n", "Saving slicer 2 for patient 0000251634 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000251634/slicer_16_2.png\n", "Saving slicer 3 for patient 0000251634 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000251634/slicer_23_3.png\n", "Saving slicer 4 for patient 0000251634 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000251634/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000251634.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000313542/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000313542/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000313542/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000313542/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000313542/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000313542/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000313542/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000313542/mask_all.nii.gz\n", "Image shape: (36, 560, 560), Mask shape: (36, 560, 560)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [3, 4, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 25, 26, 27, 28]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000313542 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000313542/slicer_13_1.png\n", "Saving slicer 2 for patient 0000313542 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000313542/slicer_16_2.png\n", "Saving slicer 3 for patient 0000313542 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000313542/slicer_13_3.png\n", "Saving slicer 4 for patient 0000313542 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000313542/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000313542.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255975/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255975/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255975/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255975/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255975/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255975/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255975/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255975/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 25\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255975 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000255975/slicer_25_1.png\n", "Saving slicer 2 for patient 0000255975 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000255975/slicer_26_2.png\n", "Saving slicer 3 for patient 0000255975 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000255975/slicer_25_3.png\n", "Saving slicer 4 for patient 0000255975 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000255975/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000255975.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000301400/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000301400/mask_all.nii.gz\n", "Image shape: (44, 512, 512), Mask shape: (44, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000301400/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000301400/mask_all.nii.gz\n", "Image shape: (44, 512, 512), Mask shape: (44, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301400/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301400/mask_all.nii.gz\n", "Image shape: (44, 512, 512), Mask shape: (44, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301400/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000301400/mask_all.nii.gz\n", "Image shape: (44, 512, 512), Mask shape: (44, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 17, 18, 19, 20, 21, 22, 23, 24, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38]\n", "Before T2 ROI slices: [13, 14, 15, 17, 18, 19, 20, 21, 22, 23, 24, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38]\n", "After T1 ROI slices: [11, 14, 15, 17, 18, 22, 23, 24, 31, 32, 33, 34, 35, 36, 37, 38, 39]\n", "After T2 ROI slices: [11, 14, 15, 17, 18, 22, 23, 24, 31, 32, 33, 34, 35, 36, 37, 38, 39]\n", "Random T1 slicer index chosen: 17\n", "Random T2 slicer index chosen: 36\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000301400 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000301400/slicer_17_1.png\n", "Saving slicer 2 for patient 0000301400 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000301400/slicer_36_2.png\n", "Saving slicer 3 for patient 0000301400 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000301400/slicer_17_3.png\n", "Saving slicer 4 for patient 0000301400 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000301400/slicer_36_4.png\n", "Successfully saved 4 slices for patient 0000301400.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254379/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254379/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254379/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254379/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254379/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254379/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254379/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254379/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000254379 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000254379/slicer_22_1.png\n", "Saving slicer 2 for patient 0000254379 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000254379/slicer_26_2.png\n", "Saving slicer 3 for patient 0000254379 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000254379/slicer_22_3.png\n", "Saving slicer 4 for patient 0000254379 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000254379/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000254379.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000242034/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000242034/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000242034/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000242034/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242034/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242034/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242034/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000242034/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000242034 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000242034/slicer_19_1.png\n", "Saving slicer 2 for patient 0000242034 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000242034/slicer_25_2.png\n", "Saving slicer 3 for patient 0000242034 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000242034/slicer_19_3.png\n", "Saving slicer 4 for patient 0000242034 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000242034/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000242034.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000235744/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000235744/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000235744/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000235744/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235744/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235744/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235744/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000235744/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 12, 13, 14, 15, 16, 17, 18, 19, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [9, 12, 13, 14, 15, 16, 17, 18, 19, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [12, 13, 14, 17, 18, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [12, 13, 14, 17, 18, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000235744 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000235744/slicer_27_1.png\n", "Saving slicer 2 for patient 0000235744 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000235744/slicer_29_2.png\n", "Saving slicer 3 for patient 0000235744 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000235744/slicer_27_3.png\n", "Saving slicer 4 for patient 0000235744 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000235744/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000235744.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000250327/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000250327/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000250327/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000250327/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250327/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250327/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250327/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250327/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [2, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 11\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000250327 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000250327/slicer_20_1.png\n", "Saving slicer 2 for patient 0000250327 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000250327/slicer_11_2.png\n", "Saving slicer 3 for patient 0000250327 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000250327/slicer_20_3.png\n", "Saving slicer 4 for patient 0000250327 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000250327/slicer_11_4.png\n", "Successfully saved 4 slices for patient 0000250327.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000230159/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000230159/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000230159/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000230159/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000230159/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000230159/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000230159/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000230159/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [16, 17, 18, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [16, 17, 18, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [21] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000230159 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000230159/slicer_13_1.png\n", "Saving slicer 2 for patient 0000230159 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000230159/slicer_21_2.png\n", "Saving slicer 3 for patient 0000230159 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000230159/slicer_13_3.png\n", "Saving slicer 4 for patient 0000230159 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000230159/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000230159.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000236071/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000236071/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000236071/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000236071/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000236071/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000236071/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000236071/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000236071/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 15\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000236071 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000236071/slicer_15_1.png\n", "Saving slicer 2 for patient 0000236071 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000236071/slicer_15_2.png\n", "Saving slicer 3 for patient 0000236071 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000236071/slicer_15_3.png\n", "Saving slicer 4 for patient 0000236071 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000236071/slicer_15_4.png\n", "Successfully saved 4 slices for patient 0000236071.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000241239/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000241239/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000241239/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000241239/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241239/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241239/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241239/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000241239/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [17, 18, 19, 20, 21, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "Before T2 ROI slices: [17, 18, 19, 20, 21, 25, 26, 27, 28, 29, 30, 31, 32, 33]\n", "After T1 ROI slices: [26, 27, 28, 29]\n", "After T2 ROI slices: [26, 27, 28, 29]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 29\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000241239 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000241239/slicer_20_1.png\n", "Saving slicer 2 for patient 0000241239 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000241239/slicer_29_2.png\n", "Saving slicer 3 for patient 0000241239 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000241239/slicer_20_3.png\n", "Saving slicer 4 for patient 0000241239 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000241239/slicer_29_4.png\n", "Successfully saved 4 slices for patient 0000241239.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000265275/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000265275/mask_all.nii.gz\n", "Image shape: (36, 256, 256), Mask shape: (36, 256, 256)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000265275/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000265275/mask_all.nii.gz\n", "Image shape: (36, 256, 256), Mask shape: (36, 256, 256)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265275/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265275/mask_all.nii.gz\n", "Image shape: (36, 256, 256), Mask shape: (36, 256, 256)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265275/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265275/mask_all.nii.gz\n", "Image shape: (36, 256, 256), Mask shape: (36, 256, 256)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [7, 12, 13, 14, 15, 16, 17, 18, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [7, 12, 13, 14, 15, 16, 17, 18, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "Slice layer [22] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [23] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265275 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000265275/slicer_22_1.png\n", "Saving slicer 2 for patient 0000265275 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000265275/slicer_23_2.png\n", "Saving slicer 3 for patient 0000265275 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000265275/slicer_22_3.png\n", "Saving slicer 4 for patient 0000265275 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000265275/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000265275.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279668/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279668/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000279668/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000279668/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279668/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279668/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279668/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000279668/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [2, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 25, 26, 27]\n", "After T2 ROI slices: [2, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 25, 26, 27]\n", "Random T1 slicer index chosen: 3\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "Slice layer [3] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000279668 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000279668/slicer_3_1.png\n", "Saving slicer 2 for patient 0000279668 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000279668/slicer_18_2.png\n", "Saving slicer 3 for patient 0000279668 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000279668/slicer_3_3.png\n", "Saving slicer 4 for patient 0000279668 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000279668/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000279668.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270006/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270006/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000270006/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000270006/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270006/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270006/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270006/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000270006/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [14, 15, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [14, 15, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000270006 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000270006/slicer_21_1.png\n", "Saving slicer 2 for patient 0000270006 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000270006/slicer_14_2.png\n", "Saving slicer 3 for patient 0000270006 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000270006/slicer_21_3.png\n", "Saving slicer 4 for patient 0000270006 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000270006/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000270006.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000237648/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000237648/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000237648/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000237648/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237648/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237648/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237648/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000237648/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 24\n", "Random T2 slicer index chosen: 13\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000237648 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000237648/slicer_24_1.png\n", "Saving slicer 2 for patient 0000237648 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000237648/slicer_13_2.png\n", "Saving slicer 3 for patient 0000237648 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000237648/slicer_24_3.png\n", "Saving slicer 4 for patient 0000237648 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000237648/slicer_13_4.png\n", "Successfully saved 4 slices for patient 0000237648.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266437/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266437/mask_all.nii.gz\n", "Image shape: (36, 256, 256), Mask shape: (36, 256, 256)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266437/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266437/mask_all.nii.gz\n", "Image shape: (36, 256, 256), Mask shape: (36, 256, 256)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266437/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266437/mask_all.nii.gz\n", "Image shape: (36, 256, 256), Mask shape: (36, 256, 256)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266437/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266437/mask_all.nii.gz\n", "Image shape: (36, 256, 256), Mask shape: (36, 256, 256)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [21, 22, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [21, 22, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "Slice layer [23] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266437 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000266437/slicer_23_1.png\n", "Saving slicer 2 for patient 0000266437 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000266437/slicer_24_2.png\n", "Saving slicer 3 for patient 0000266437 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000266437/slicer_23_3.png\n", "Saving slicer 4 for patient 0000266437 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000266437/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000266437.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000291959/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000291959/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000291959/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000291959/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291959/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291959/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291959/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000291959/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 23, 25, 26, 27, 28]\n", "Before T2 ROI slices: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 23, 25, 26, 27, 28]\n", "After T1 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000291959 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000291959/slicer_13_1.png\n", "Saving slicer 2 for patient 0000291959 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000291959/slicer_14_2.png\n", "Saving slicer 3 for patient 0000291959 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000291959/slicer_13_3.png\n", "Saving slicer 4 for patient 0000291959 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000291959/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000291959.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000260353/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000260353/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000260353/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000260353/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260353/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260353/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260353/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000260353/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 30\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000260353 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000260353/slicer_30_1.png\n", "Saving slicer 2 for patient 0000260353 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000260353/slicer_16_2.png\n", "Saving slicer 3 for patient 0000260353 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000260353/slicer_30_3.png\n", "Saving slicer 4 for patient 0000260353 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000260353/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000260353.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000308595/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000308595/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000308595/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000308595/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308595/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308595/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308595/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308595/mask_all.nii.gz\n", "Image shape: (40, 352, 352), Mask shape: (40, 352, 352)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 23\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000308595 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000308595/slicer_27_1.png\n", "Saving slicer 2 for patient 0000308595 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000308595/slicer_23_2.png\n", "Saving slicer 3 for patient 0000308595 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000308595/slicer_27_3.png\n", "Saving slicer 4 for patient 0000308595 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000308595/slicer_23_4.png\n", "Successfully saved 4 slices for patient 0000308595.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000264095/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000264095/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000264095/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000264095/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264095/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264095/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264095/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000264095/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [2, 3, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [2, 3, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [10, 11, 12, 15, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [10, 11, 12, 15, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 7\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [7] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000264095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000264095/slicer_22_1.png\n", "Saving slicer 2 for patient 0000264095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000264095/slicer_7_2.png\n", "Saving slicer 3 for patient 0000264095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000264095/slicer_22_3.png\n", "Saving slicer 4 for patient 0000264095 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000264095/slicer_7_4.png\n", "Successfully saved 4 slices for patient 0000264095.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000238505/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000238505/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000238505/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000238505/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000238505/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000238505/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000238505/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000238505/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 21\n", "Random T2 slicer index chosen: 30\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [30] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000238505 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000238505/slicer_21_1.png\n", "Saving slicer 2 for patient 0000238505 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000238505/slicer_30_2.png\n", "Saving slicer 3 for patient 0000238505 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000238505/slicer_21_3.png\n", "Saving slicer 4 for patient 0000238505 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000238505/slicer_30_4.png\n", "Successfully saved 4 slices for patient 0000238505.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255794/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255794/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000255794/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000255794/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255794/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255794/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255794/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000255794/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Before T2 ROI slices: [11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 16\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000255794 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000255794/slicer_16_1.png\n", "Saving slicer 2 for patient 0000255794 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000255794/slicer_16_2.png\n", "Saving slicer 3 for patient 0000255794 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000255794/slicer_16_3.png\n", "Saving slicer 4 for patient 0000255794 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000255794/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000255794.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000308093/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000308093/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000308093/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000308093/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308093/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308093/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308093/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000308093/mask_all.nii.gz\n", "Image shape: (36, 624, 640), Mask shape: (36, 624, 640)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 16, 17, 18, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [14, 15, 16, 17, 18, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [17, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [17, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 27\n", "Random T2 slicer index chosen: 14\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [14] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000308093 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000308093/slicer_27_1.png\n", "Saving slicer 2 for patient 0000308093 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000308093/slicer_14_2.png\n", "Saving slicer 3 for patient 0000308093 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000308093/slicer_27_3.png\n", "Saving slicer 4 for patient 0000308093 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000308093/slicer_14_4.png\n", "Successfully saved 4 slices for patient 0000308093.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257722/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257722/mask_all.nii.gz\n", "Image shape: (36, 448, 448), Mask shape: (36, 448, 448)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000257722/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000257722/mask_all.nii.gz\n", "Image shape: (36, 448, 448), Mask shape: (36, 448, 448)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257722/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257722/mask_all.nii.gz\n", "Image shape: (36, 448, 448), Mask shape: (36, 448, 448)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257722/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000257722/mask_all.nii.gz\n", "Image shape: (36, 448, 448), Mask shape: (36, 448, 448)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000257722 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000257722/slicer_20_1.png\n", "Saving slicer 2 for patient 0000257722 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000257722/slicer_26_2.png\n", "Saving slicer 3 for patient 0000257722 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000257722/slicer_20_3.png\n", "Saving slicer 4 for patient 0000257722 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000257722/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000257722.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000307828/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000307828/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000307828/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000307828/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307828/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307828/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307828/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307828/mask_all.nii.gz\n", "Image shape: (32, 512, 512), Mask shape: (32, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [13, 14, 15, 16, 17, 18, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [13, 14, 15, 16, 17, 18, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 9\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [9] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000307828 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000307828/slicer_29_1.png\n", "Saving slicer 2 for patient 0000307828 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000307828/slicer_9_2.png\n", "Saving slicer 3 for patient 0000307828 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000307828/slicer_29_3.png\n", "Saving slicer 4 for patient 0000307828 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000307828/slicer_9_4.png\n", "Successfully saved 4 slices for patient 0000307828.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000307119/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000307119/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000307119/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000307119/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307119/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307119/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307119/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000307119/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 14\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [20] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000307119 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000307119/slicer_14_1.png\n", "Saving slicer 2 for patient 0000307119 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000307119/slicer_20_2.png\n", "Saving slicer 3 for patient 0000307119 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000307119/slicer_14_3.png\n", "Saving slicer 4 for patient 0000307119 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000307119/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000307119.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300351/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300351/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000300351/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000300351/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300351/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300351/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300351/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000300351/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [5, 6, 7, 8, 11, 12, 13, 14, 15, 16, 17, 23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [5, 6, 7, 8, 11, 12, 13, 14, 15, 16, 17, 23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000300351 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000300351/slicer_23_1.png\n", "Saving slicer 2 for patient 0000300351 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000300351/slicer_24_2.png\n", "Saving slicer 3 for patient 0000300351 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000300351/slicer_23_3.png\n", "Saving slicer 4 for patient 0000300351 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000300351/slicer_24_4.png\n", "Successfully saved 4 slices for patient 0000300351.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266402/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266402/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000266402/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000266402/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266402/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266402/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266402/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000266402/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 22\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000266402 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000266402/slicer_22_1.png\n", "Saving slicer 2 for patient 0000266402 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000266402/slicer_18_2.png\n", "Saving slicer 3 for patient 0000266402 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000266402/slicer_22_3.png\n", "Saving slicer 4 for patient 0000266402 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000266402/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000266402.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283114/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283114/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000283114/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000283114/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283114/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283114/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283114/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000283114/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [23, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [23, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 29\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "Slice layer [29] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000283114 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000283114/slicer_29_1.png\n", "Saving slicer 2 for patient 0000283114 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000283114/slicer_25_2.png\n", "Saving slicer 3 for patient 0000283114 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000283114/slicer_29_3.png\n", "Saving slicer 4 for patient 0000283114 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000283114/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000283114.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281737/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281737/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281737/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281737/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281737/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281737/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281737/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281737/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T1 ROI slices: [16, 18, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "After T2 ROI slices: [16, 18, 24, 25, 26, 27, 28, 29, 30, 31, 32]\n", "Random T1 slicer index chosen: 19\n", "Random T2 slicer index chosen: 19\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [19] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000281737 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000281737/slicer_19_1.png\n", "Saving slicer 2 for patient 0000281737 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000281737/slicer_19_2.png\n", "Saving slicer 3 for patient 0000281737 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000281737/slicer_19_3.png\n", "Saving slicer 4 for patient 0000281737 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000281737/slicer_19_4.png\n", "Successfully saved 4 slices for patient 0000281737.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000261474/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000261474/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000261474/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000261474/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261474/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261474/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261474/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000261474/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Before T2 ROI slices: [16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T1 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "After T2 ROI slices: [18, 19, 20, 21, 22, 23, 24, 25, 26]\n", "Random T1 slicer index chosen: 23\n", "Random T2 slicer index chosen: 18\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000261474 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000261474/slicer_23_1.png\n", "Saving slicer 2 for patient 0000261474 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000261474/slicer_18_2.png\n", "Saving slicer 3 for patient 0000261474 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000261474/slicer_23_3.png\n", "Saving slicer 4 for patient 0000261474 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000261474/slicer_18_4.png\n", "Successfully saved 4 slices for patient 0000261474.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000250292/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000250292/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000250292/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000250292/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250292/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250292/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250292/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000250292/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [9, 10, 11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [9, 10, 11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 25\n", "A total of 1 slices were extracted!\n", "Slice layer [13] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000250292 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000250292/slicer_13_1.png\n", "Saving slicer 2 for patient 0000250292 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000250292/slicer_25_2.png\n", "Saving slicer 3 for patient 0000250292 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000250292/slicer_13_3.png\n", "Saving slicer 4 for patient 0000250292 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000250292/slicer_25_4.png\n", "Successfully saved 4 slices for patient 0000250292.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000309047/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000309047/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000309047/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000309047/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309047/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309047/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309047/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000309047/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [14, 15, 17, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [14, 15, 17, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 15\n", "Random T2 slicer index chosen: 27\n", "A total of 1 slices were extracted!\n", "Slice layer [15] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000309047 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000309047/slicer_15_1.png\n", "Saving slicer 2 for patient 0000309047 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000309047/slicer_27_2.png\n", "Saving slicer 3 for patient 0000309047 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000309047/slicer_15_3.png\n", "Saving slicer 4 for patient 0000309047 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000309047/slicer_27_4.png\n", "Successfully saved 4 slices for patient 0000309047.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000265731/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000265731/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000265731/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000265731/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265731/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265731/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265731/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000265731/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [11, 12, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Before T2 ROI slices: [11, 12, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T1 ROI slices: [18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 16\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Slice layer [16] is all 0, skipping extraction!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000265731 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000265731/slicer_20_1.png\n", "Saving slicer 2 for patient 0000265731 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000265731/slicer_16_2.png\n", "Saving slicer 3 for patient 0000265731 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000265731/slicer_20_3.png\n", "Saving slicer 4 for patient 0000265731 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000265731/slicer_16_4.png\n", "Successfully saved 4 slices for patient 0000265731.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272865/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272865/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000272865/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000272865/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272865/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272865/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272865/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000272865/mask_all.nii.gz\n", "Image shape: (32, 384, 384), Mask shape: (32, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [10, 11, 12, 13, 14, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [10, 11, 12, 13, 14, 20, 21, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [11, 12, 13, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "After T2 ROI slices: [11, 12, 13, 19, 20, 21, 22, 23, 24, 25, 26, 27]\n", "Random T1 slicer index chosen: 20\n", "Random T2 slicer index chosen: 26\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000272865 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000272865/slicer_20_1.png\n", "Saving slicer 2 for patient 0000272865 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000272865/slicer_26_2.png\n", "Saving slicer 3 for patient 0000272865 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000272865/slicer_20_3.png\n", "Saving slicer 4 for patient 0000272865 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000272865/slicer_26_4.png\n", "Successfully saved 4 slices for patient 0000272865.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1112136/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1112136/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/00C1112136/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/00C1112136/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1112136/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1112136/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1112136/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/00C1112136/mask_all.nii.gz\n", "Image shape: (36, 512, 512), Mask shape: (36, 512, 512)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28]\n", "Before T2 ROI slices: [6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 22, 23, 24, 25, 26, 27, 28]\n", "After T1 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 24, 25, 26, 27, 28]\n", "After T2 ROI slices: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 24, 25, 26, 27, 28]\n", "Random T1 slicer index chosen: 13\n", "Random T2 slicer index chosen: 24\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 00C1112136 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/00C1112136/slicer_13_1.png\n", "Saving slicer 2 for patient 00C1112136 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/00C1112136/slicer_24_2.png\n", "Saving slicer 3 for patient 00C1112136 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/00C1112136/slicer_13_3.png\n", "Saving slicer 4 for patient 00C1112136 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/00C1112136/slicer_24_4.png\n", "Successfully saved 4 slices for patient 00C1112136.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254496/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254496/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000254496/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000254496/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254496/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254496/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254496/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000254496/mask_all.nii.gz\n", "Image shape: (36, 384, 384), Mask shape: (36, 384, 384)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T2 ROI slices: [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Random T1 slicer index chosen: 8\n", "Random T2 slicer index chosen: 21\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000254496 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000254496/slicer_8_1.png\n", "Saving slicer 2 for patient 0000254496 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000254496/slicer_21_2.png\n", "Saving slicer 3 for patient 0000254496 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000254496/slicer_8_3.png\n", "Saving slicer 4 for patient 0000254496 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000254496/slicer_21_4.png\n", "Successfully saved 4 slices for patient 0000254496.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281969/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281969/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000281969/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000281969/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281969/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281969/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281969/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000281969/mask_all.nii.gz\n", "Image shape: (36, 320, 320), Mask shape: (36, 320, 320)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "Before T2 ROI slices: [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30]\n", "After T1 ROI slices: [12, 13, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "After T2 ROI slices: [12, 13, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29]\n", "Random T1 slicer index chosen: 18\n", "Random T2 slicer index chosen: 17\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000281969 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000281969/slicer_18_1.png\n", "Saving slicer 2 for patient 0000281969 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000281969/slicer_17_2.png\n", "Saving slicer 3 for patient 0000281969 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000281969/slicer_18_3.png\n", "Saving slicer 4 for patient 0000281969 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000281969/slicer_17_4.png\n", "Successfully saved 4 slices for patient 0000281969.\n", "\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000276349/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000276349/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/Before/0000276349/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/Before/0000276349/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276349/T1.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276349/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Loading image from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276349/T2.nii.gz\n", "Loading mask from: /home/xtm/kyr_data/original_data/combined/After_registed/0000276349/mask_all.nii.gz\n", "Image shape: (36, 400, 400), Mask shape: (36, 400, 400)\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Getting ROI slicers index...\n", "Before T1 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "Before T2 ROI slices: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]\n", "After T1 ROI slices: [16, 20, 21, 22, 25, 26, 27, 28, 29, 30, 31]\n", "After T2 ROI slices: [16, 20, 21, 22, 25, 26, 27, 28, 29, 30, 31]\n", "Random T1 slicer index chosen: 28\n", "Random T2 slicer index chosen: 20\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "A total of 1 slices were extracted!\n", "Saving slicer 1 for patient 0000276349 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000276349/slicer_28_1.png\n", "Saving slicer 2 for patient 0000276349 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000276349/slicer_20_2.png\n", "Saving slicer 3 for patient 0000276349 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000276349/slicer_28_3.png\n", "Saving slicer 4 for patient 0000276349 at /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4/0000276349/slicer_20_4.png\n", "Successfully saved 4 slices for patient 0000276349.\n", "\n" ] } ], "source": [ "#处理测试集样本80个\n", "\n", "import os\n", "import SimpleITK as sitk\n", "import numpy as np\n", "import random\n", "import matplotlib.pyplot as plt\n", "import nibabel as nib \n", "from skimage.transform import resize\n", "from matplotlib import patches\n", "import cv2\n", "\n", "def load_images(image_path, mask_path):\n", " # 检查文件是否存在\n", " if not os.path.exists(image_path):\n", " raise FileNotFoundError(f\"Original MRI file not found: {image_path}\")\n", " if not os.path.exists(mask_path):\n", " raise FileNotFoundError(f\"ROI mask file not found: {mask_path}\")\n", " \n", " # 读取原始MRI图像和mask文件\n", " print(f\"Loading image from: {image_path}\")\n", " image = sitk.ReadImage(image_path) \n", " print(f\"Loading mask from: {mask_path}\")\n", " mask = sitk.ReadImage(mask_path)\n", "\n", " # 转换为数组\n", " image_array = sitk.GetArrayFromImage(image)\n", " mask_array = sitk.GetArrayFromImage(mask)\n", "\n", " print(f\"Image shape: {image_array.shape}, Mask shape: {mask_array.shape}\")\n", "\n", " return image_array, mask_array\n", "\n", "def get_roi_slicers_index(mask_array):\n", " # 获取包含ROI的层索引\n", " print(f\"Getting ROI slicers index...\")\n", " roi_slicers_index = [i for i in range(mask_array.shape[0]) if np.any(mask_array[i])]\n", "\n", " if not roi_slicers_index:\n", " print(\"No layers containing ROI, ending operation!\")\n", " return []\n", " \n", " return roi_slicers_index\n", "def save_slicers(base_output_dir, patient_id, slicer, slicer_index, slicer_number):\n", " # 在base_output_dir下创建每个病人的目录\n", " patient_dir = os.path.join(base_output_dir,patient_id)\n", " os.makedirs(patient_dir, exist_ok=True)\n", "\n", " slicer = np.asarray(slicer)\n", " # 去除维度为1的维度\n", " slicer = np.squeeze(slicer)\n", "\n", " file_name = f\"slicer_{slicer_index}_{slicer_number}.png\"\n", " file_path = os.path.join(patient_dir, file_name)\n", "\n", " print(f\"Saving slicer {slicer_number} for patient {patient_id} at {file_path}\")\n", "\n", " # 保存图像\n", " fig, ax = plt.subplots() \n", " ax.imshow(slicer, cmap='gray') # 显示对应切片\n", " ax.axis('off') # 关闭坐标轴\n", " plt.tight_layout()\n", "\n", " # 保存切片为图像文件，去掉白色背景\n", " fig.savefig(file_path, bbox_inches='tight', pad_inches=0, transparent=True)\n", " plt.close(fig) # 关闭图像\n", " \n", "\n", "def extract_roi_slicers(image_array,mask_array, roi_slicers_index): \n", " # 提取包含ROI的切片\n", " roi_slicers = []\n", " \n", " original_image = image_array[roi_slicers_index, :, :].astype(np.float16)\n", "\n", " # 检查层数据是否为空\n", " if np.max(mask_array[roi_slicers_index]) == 0:\n", " print(f\"Slice layer {roi_slicers_index} is all 0, skipping extraction!\")\n", " original_image = image_array[roi_slicers_index]\n", " \n", " roi_slicers.append(original_image)\n", "\n", " print(f\"A total of {len(roi_slicers)} slices were extracted!\")\n", "\n", " return roi_slicers #会返回只有一个元素的list ，取出这个元素即可\n", "\n", "\n", "def process_patient_data(base_dir, patient_folder, base_output_dir):\n", " patient_id = os.path.basename(patient_folder)\n", "\n", " # 指定患者数据\n", " before_image_path_t1 = os.path.join(base_dir, 'Before', patient_folder, 'T1.nii.gz')\n", " before_image_path_t2 = os.path.join(base_dir, 'Before', patient_folder, 'T2.nii.gz')\n", " before_mask_path = os.path.join(base_dir, 'Before', patient_folder, 'mask_all.nii.gz')\n", "\n", " after_image_path_t1 = os.path.join(base_dir, 'After_registed', patient_folder, 'T1.nii.gz')\n", " after_image_path_t2 = os.path.join(base_dir, 'After_registed', patient_folder, 'T2.nii.gz') \n", " after_mask_path = os.path.join(base_dir, 'After_registed', patient_folder, 'mask_all.nii.gz')\n", " \n", " try:\n", " # 加载患者数据\n", " before_image_array_t1, before_mask_array = load_images(before_image_path_t1, before_mask_path)\n", " before_image_array_t2, _ = load_images(before_image_path_t2, before_mask_path)\n", "\n", " after_image_array_t1, after_mask_array = load_images(after_image_path_t1, after_mask_path)\n", " after_image_array_t2, _ = load_images(after_image_path_t2, after_mask_path)\n", " except FileNotFoundError as e:\n", " print(f\"Error: {e}\") # 打印错误信息\n", " return # 跳过当前病人的处理\n", " except Exception as e:\n", " print(f\"Unexpected error: {e}\")\n", " return\n", "\n", " # 获取包含ROI的层索引\n", " before_T1_ROI_slicers_index = get_roi_slicers_index(before_mask_array)\n", " before_T2_ROI_slicers_index = get_roi_slicers_index(before_mask_array)\n", "\n", " after_T1_ROI_slicers_index = get_roi_slicers_index(after_mask_array)\n", " after_T2_ROI_slicers_index = get_roi_slicers_index(after_mask_array)\n", "\n", " print(f\"Before T1 ROI slices: {before_T1_ROI_slicers_index}\")\n", " print(f\"Before T2 ROI slices: {before_T2_ROI_slicers_index}\")\n", "\n", " print(f\"After T1 ROI slices: {after_T1_ROI_slicers_index}\")\n", " print(f\"After T2 ROI slices: {after_T2_ROI_slicers_index}\")\n", "\n", "\n", " # 在治疗前包含ROI的索引中随机抽取一个，对应的在治疗后抽取该索引，并提取这两个切片\n", " random_before_T1_slicer_index = random.choice(before_T1_ROI_slicers_index)\n", " random_before_T2_slicer_index = random.choice(before_T2_ROI_slicers_index)\n", "\n", " print(f\"Random T1 slicer index chosen: {random_before_T1_slicer_index}\")\n", " print(f\"Random T2 slicer index chosen: {random_before_T2_slicer_index}\")\n", "\n", " # 提取所选索引所对应的切片 T1\n", " random_before_T1_slicer = extract_roi_slicers(before_image_array_t1,before_mask_array, [random_before_T1_slicer_index])[0]\n", " # 提取对应索引的治疗后的切片\n", " after_T1_slicer = extract_roi_slicers(after_image_array_t1,after_mask_array, [random_before_T1_slicer_index])[0]\n", "\n", " # 提取 T2 切片\n", " random_before_T2_slicer = extract_roi_slicers(before_image_array_t2,before_mask_array, [random_before_T2_slicer_index])[0]\n", " after_T2_slicer = extract_roi_slicers(after_image_array_t2, after_mask_array,[random_before_T2_slicer_index])[0]\n", "\n", " \n", " # 保存切片\n", " save_slicers(base_output_dir, patient_id, random_before_T1_slicer, random_before_T1_slicer_index, slicer_number=1)\n", " save_slicers(base_output_dir, patient_id, random_before_T2_slicer, random_before_T2_slicer_index, slicer_number=2)\n", "\n", " save_slicers(base_output_dir, patient_id, after_T1_slicer, random_before_T1_slicer_index, slicer_number=3)\n", " save_slicers(base_output_dir, patient_id, after_T2_slicer, random_before_T2_slicer_index, slicer_number=4)\n", "\n", " # 检查是否保存了 4 个切片\n", " saved_slicers = [f for f in os.listdir(os.path.join(base_output_dir, patient_id)) if f.endswith('.png')]\n", " \n", " if len(saved_slicers) != 4:\n", " print(f\"Error: Patient {patient_id} saved {len(saved_slicers)} slices. Expected 4 slices. Exiting process.\")\n", " return #跳过该病人的处理\n", " \n", " print(f\"Successfully saved 4 slices for patient {patient_id}.\\n\")\n", "\n", "\n", "\n", "def main():\n", " base_dir = '/home/xtm/kyr_data/original_data/combined' #原始文件路径\n", " base_output_dir = '/home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4'\n", " patient_slice_count = {}\n", " \n", " # 获取需要处理的病人ID列表\n", " patient_ids_to_process_test = test_patient['ID'].tolist() # 从DataFrame的ID列中获取病人ID列表\n", "\n", " patient_folders = [f for f in os.listdir(os.path.join(base_dir, 'Before')) if os.path.isdir(os.path.join(base_dir, 'Before', f)) and f in patient_ids_to_process_test ]\n", " print(len(patient_folders)) \n", " \n", " for patient_id in patient_folders:\n", " process_patient_data(base_dir, patient_id, base_output_dir)\n", " \n", " for patient_id, count in patient_slice_count.items():\n", " if count != 4:\n", " print(f\"Patient {patient_id}: {count} slices\")\n", " \n", "\n", "if __name__ == '__main__':\n", " main()" ] }, { "cell_type": "code", "execution_count": 13, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_1:1_80/0000293545/0000293545.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_1:1_80/0000276653/0000276653.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_1:1_80/0000272983/0000272983.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_1:1_80/0000257744/0000257744.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_1:1_80/00C1117114/00C1117114.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_1:1_80/0000286008/0000286008.png\n", "successfully: 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/home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_1:1_80/0000281737/0000281737.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_1:1_80/0000261474/0000261474.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_1:1_80/0000250292/0000250292.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_1:1_80/0000309047/0000309047.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_1:1_80/0000265731/0000265731.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_1:1_80/0000272865/0000272865.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_1:1_80/00C1112136/00C1112136.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_1:1_80/0000254496/0000254496.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_1:1_80/0000281969/0000281969.png\n", "successfully: /home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_1:1_80/0000276349/0000276349.png\n" ] } ], "source": [ "#组合测试集每个目录下的四张图片，并保存为单个图像 2025-0226 666个子目录\n", "import os\n", "from PIL import Image\n", "\n", "base_dir = '/home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_80_4'\n", "output_base_dir = '/home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_test_1:1_80'\n", "#遍历病人目录\n", "\n", "for patient_dir in os.listdir(base_dir):\n", " patient_path = os.path.join(base_dir,patient_dir)\n", "\n", " #确保是一个目录\n", " if os.path.isdir (patient_path):\n", " #按照编号来找图片\n", " png_paths = {}\n", "\n", " for file_name in os.listdir(patient_path):\n", " if file_name.endswith('.png') and \"slicer\" in file_name:\n", " #提取文件中的最后数字部分来生成路径\n", " parts = file_name.split('_')\n", " if len(parts)==3:\n", " png_number = int(parts[2].split('.')[0]) #获取最后一个数字\n", " png_paths[png_number] = os.path.join(patient_path,file_name) \n", "\n", " #检查是否找到了四张png\n", " if len(png_paths)==4 and all(i in png_paths for i in range(1,5)):\n", "\n", " #打开所有图片\n", " pngs = [Image.open(png_paths[i]) for i in range(1,5)] #返回图片对此昂，并储存在pngs列表中\n", "\n", " #获取图片模式\n", " mode = pngs[0].mode\n", "\n", " #获取任意一张图片的图片的宽度和高度\n", " widths,heights = pngs[0].size\n", "\n", "\n", " #创建新的大图 2*2\n", " combination_width = widths * 2 \n", " combination_height = heights * 2\n", "\n", " #创建空白的png 保持原始图片的模式\n", " combination_image = Image.new(mode, (combination_width,combination_height))\n", "\n", " #将图片放到大图上\n", " combination_image.paste(pngs[0],(0,0)) # 第一张图片放在左上角\n", " combination_image.paste(pngs[2],(widths,0))# 第三张图片放在右上角\n", " combination_image.paste(pngs[1],(0,heights)) # 第二张图片放在左下角\n", " combination_image.paste(pngs[3],(widths,heights)) # 第四张图片放在右下角\n", "\n", " #创建输出目录\n", " output_dir = os.path.join(output_base_dir,patient_dir)\n", " os.makedirs(output_dir,exist_ok=True)\n", "\n", " #保存组合后的图片\n", " output_path = os.path.join(output_dir, f\"{patient_dir}.png\")\n", " combination_image.save(output_path)\n", "\n", " print(f'successfully: {output_path}')\n", " else:\n", " print(f'patient {patient_dir} is less picture,skipping.')" ] }, { "cell_type": "code", "execution_count": 6, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "目录合并完成。\n" ] } ], "source": [ "#合并阴阳样本为训练集\n", "import os\n", "import shutil\n", "\n", "source_dir1 = '/home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_combine_661_negtive'\n", "source_dir2 = '/home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_combine_666__positive' # 假设这里实际是另一个不同的目录\n", "target_dir = '/home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/OS_train_1:1_1327'\n", "\n", "def merge_directories(source_dir, target_dir):\n", " if not os.path.exists(target_dir):\n", " os.makedirs(target_dir)\n", "\n", " for root, dirs, files in os.walk(source_dir):\n", " # 计算相对路径\n", " relative_path = os.path.relpath(root, source_dir)\n", " target_sub_dir = os.path.join(target_dir, relative_path)\n", "\n", " # 创建目标子目录\n", " if not os.path.exists(target_sub_dir):\n", " os.makedirs(target_sub_dir)\n", "\n", " # 复制文件\n", " for file in files:\n", " source_file_path = os.path.join(root, file)\n", " target_file_path = os.path.join(target_sub_dir, file)\n", " shutil.copy2(source_file_path, target_file_path)\n", "\n", "# 合并第一个源目录\n", "merge_directories(source_dir1, target_dir)\n", "# 合并第二个源目录\n", "merge_directories(source_dir2, target_dir)\n", "\n", "print(\"目录合并完成。\")" ] }, { "cell_type": "code", "execution_count": 14, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "600\n", "816\n", "1416\n", "Expand successfully!\n" ] } ], "source": [ "#临床信息扩充 只需要对剩余的阳性样本（conditate_train_positive）进行病例复制 cox与id无关 直接复制8遍再加上原来的数据即可 75\n", "\n", "\n", "import pandas as pd\n", "\n", "expand_case = conditate_train_positive.loc[conditate_train_positive.index.repeat(8)]\n", "# 将结果保存到一个新的文件中\n", "\n", "all_data = pd.concat([clinical_data, expand_case], ignore_index=True)\n", "print(len(expand_case))\n", "print(len(clinical_data))\n", "\n", "# 创建一个函数为重复的病历号加上后缀\n", "def add_suffix_to_duplicates(df, id_column='ID'):\n", " # 确保病历号是字符串类型，避免类型不匹配\n", " df[id_column] = df[id_column].astype(str).str.strip()\n", " \n", " # 获取病历号列的重复情况\n", " duplicate_counts = df[id_column].value_counts()\n", "\n", " # 用一个字典存储每个病历号的计数\n", " id_suffix_map = {}\n", "\n", " for index, row in df.iterrows():\n", " patient_id = row[id_column]\n", "\n", " # 只处理重复的病历号\n", " if duplicate_counts[patient_id] > 1:\n", " # 如果该病历号是重复的，给它加后缀\n", " if patient_id not in id_suffix_map:\n", " id_suffix_map[patient_id] = 1\n", " else:\n", " id_suffix_map[patient_id] += 1\n", " \n", " # 设置新的病历号，带上后缀\n", " df.at[index, id_column] = f\"{patient_id}_{id_suffix_map[patient_id]}\"\n", "\n", " return df\n", "\n", "# 调用函数为重复的病历号加上后缀\n", "all_data = add_suffix_to_duplicates(all_data)\n", "\n", "#保存结果\n", "all_data.to_csv('/home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/expand_table_0301_OS.csv', index=False)\n", "print(f\"{all_data.shape[0]}\")\n", "print(\"Expand successfully!\")\n" ] }, { "cell_type": "code", "execution_count": 3, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Patient ID 0000263289 does not exist in the directory, skipping.\n", "Patient ID 0000287271 does not exist in the directory, skipping.\n", "Patient ID 0000283452 does not exist in the directory, skipping.\n", "Patient ID 0000307952 does not exist in the directory, skipping.\n", "Patient ID 0000289330 does not exist in the directory, skipping.\n", "Patient ID 0000238505 does not exist in the directory, skipping.\n", "Patient ID 0000275292 does not exist in the directory, skipping.\n", "Patient ID 0000251634 does not exist in the directory, skipping.\n", "Patient ID 0000234079 does not exist in the directory, skipping.\n", "Patient ID 0000302413 does not exist in the directory, skipping.\n", "Patient ID 0000257722 does not exist in the directory, skipping.\n", "Patient ID 0000235744 does not exist in the directory, skipping.\n", "Patient ID 0000279668 does not exist in the directory, skipping.\n", "Patient ID 0000270078 does not exist in the directory, skipping.\n", "Patient ID 0000261474 does not exist in the directory, skipping.\n", "Patient ID 0000268787 does not exist in the directory, skipping.\n", "Patient ID 0000281737 does not exist in the directory, skipping.\n", "Patient ID 0000286008 does not exist in the directory, skipping.\n", "Patient ID 0000260353 does not exist in the directory, skipping.\n", "Patient ID 0000266402 does not exist in the directory, skipping.\n", "Patient ID 0000308093 does not exist in the directory, skipping.\n", "Patient ID 0000249701 does not exist in the directory, skipping.\n", "Patient ID 0000291959 does not exist in the directory, skipping.\n", "Patient ID 0000281903 does not exist in the directory, skipping.\n", "Patient ID 0000249641 does not exist in the directory, skipping.\n", "Patient ID 0000310327 does not exist in the directory, skipping.\n", "Patient ID 0000251188 does not exist in the directory, skipping.\n", "Patient ID 0000252915 does not exist in the directory, skipping.\n", "Patient ID 0000249999 does not exist in the directory, skipping.\n", "Patient ID 0000256588 does not exist in the directory, skipping.\n", "Patient ID 0000255975 does not exist in the directory, skipping.\n", "Patient ID 0000238501 does not exist in the directory, skipping.\n", "Patient ID 0000293352 does not exist in the directory, skipping.\n", "Patient ID 0000247793_1 does not exist in the directory, skipping.\n", "Patient ID 0000261070 does not exist in the directory, skipping.\n", "Patient ID 0000265275 does not exist in the directory, skipping.\n", "Patient ID 0000244125 does not exist in the directory, skipping.\n", "Patient ID 0000282638 does not exist in the directory, skipping.\n", "Patient ID 0000265731 does not exist in the directory, skipping.\n", "Patient ID 0000246031 does not exist in the directory, skipping.\n", "Patient ID 0000237233 does not exist in the directory, skipping.\n", "Patient ID 0000230159 does not exist in the directory, skipping.\n", "Patient ID 0000236071 does not exist in the directory, skipping.\n", "Patient ID 0000241239 does not exist in the directory, skipping.\n", "Patient ID 0000283114 does not exist in the directory, skipping.\n", "Patient ID 0000313542 does not exist in the directory, skipping.\n", "Patient ID 0000311990 does not exist in the directory, skipping.\n", "Patient ID 0000309047 does not exist in the directory, skipping.\n", "Patient ID 0000308595 does not exist in the directory, skipping.\n", "Patient ID 0000307119 does not exist in the directory, skipping.\n", "Patient ID 0000307828 does not exist in the directory, skipping.\n", "Patient ID 0000301400 does not exist in the directory, skipping.\n", "Patient ID 0000301256 does not exist in the directory, skipping.\n", "Patient ID 0000300351 does not exist in the directory, skipping.\n", "Patient ID 0000293545 does not exist in the directory, skipping.\n", "Patient ID 0000281969 does not exist in the directory, skipping.\n", "Patient ID 00C1117114 does not exist in the directory, skipping.\n", "Patient ID 0000276653 does not exist in the directory, skipping.\n", "Patient ID 00C1112136 does not exist in the directory, skipping.\n", "Patient ID 0000275617 does not exist in the directory, skipping.\n", "Patient ID 0000276349 does not exist in the directory, skipping.\n", "Patient ID 0000272983 does not exist in the directory, skipping.\n", "Patient ID 0000272865 does not exist in the directory, skipping.\n", "Patient ID 0000270006 does not exist in the directory, skipping.\n", "Patient ID 0000266437 does not exist in the directory, skipping.\n", "Patient ID 0000265976 does not exist in the directory, skipping.\n", "Patient ID 0000264095 does not exist in the directory, skipping.\n", "Patient ID 0000260961 does not exist in the directory, skipping.\n", "Patient ID 0000257744 does not exist in the directory, skipping.\n", "Patient ID 0000256403 does not exist in the directory, skipping.\n", "Patient ID 0000255794 does not exist in the directory, skipping.\n", "Patient ID 0000256896 does not exist in the directory, skipping.\n", "Patient ID 0000254379 does not exist in the directory, skipping.\n", "Patient ID 0000253700 does not exist in the directory, skipping.\n", "Patient ID 0000254496 does not exist in the directory, skipping.\n", "Patient ID 0000250292 does not exist in the directory, skipping.\n", "Patient ID 0000250327 does not exist in the directory, skipping.\n", "Patient ID 0000248143 does not exist in the directory, skipping.\n", "Patient ID 0000243961 does not exist in the directory, skipping.\n", "Patient ID 0000242034 does not exist in the directory, skipping.\n", "Patient ID 0000237648 does not exist in the directory, skipping.\n", "Patient ID 0000247793_2 does not exist in the directory, skipping.\n", "Patient ID 0000247793_3 does not exist in the directory, skipping.\n", "Patient ID 0000247793_4 does not exist in the directory, skipping.\n", "Patient ID 0000247793_5 does not exist in the directory, skipping.\n", "Patient ID 0000247793_6 does not exist in the directory, skipping.\n", "Patient ID 0000247793_7 does not exist in the directory, skipping.\n", "Patient ID 0000247793_8 does not exist in the directory, skipping.\n", "Patient ID 0000247793_9 does not exist in the directory, skipping.\n", "The data of all patients have been successfully saved to /home/kyr/Dataset/MRI_815/json_files_2025/0319_json/OS/train_OS_0319.json\n", "All : 1327\n" ] } ], "source": [ "\n", "#kyr 中山json文件提取 整合标签的状态和具体的数值 OS json文件生成 2025-0301 最完整的一版\n", "import pandas as pd\n", "import json\n", "import os\n", "import random\n", "\n", "csv_file= '/home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/expand_table_0301_OS.csv'\n", "df = pd.read_csv(csv_file)\n", "\n", "# 处理缺失值，将缺失值填充为0\n", "df = df.fillna(0)\n", "\n", "#输出文件夹的目录\n", "output_dir = '/home/kyr/Dataset/MRI_815/json_files_2025/0319_json/OS'\n", "os.makedirs(output_dir,exist_ok=True)\n", "\n", "# 指定需要检查的目录\n", "check_dir = '/home/xtm/kyr_data/original_data/combined/After_registed'\n", "random_slicer_dir = '/home/kyr/Dataset/Qwen2_5vl/0319_image/train_and_test_0226_OS/OS_train_1327' #图片路径\n", "\n", "# 获取该目录下的所有子目录名\n", "existing_directories = os.listdir(random_slicer_dir)#只有当病历号在指定目录下的子目录中存在时，程序才会处理该病人的数据并生成 JSON 文件。\n", "\n", "#检查random_slicer_dir目录下的所有子目录\n", "#existing_png_dirs = os.listdir(random_slicer_dir)\n", "\n", "\n", "# 存储所有病人的 JSON 数据的列表\n", "all_patient_data_1 = []\n", "# all_patient_data_2 = []\n", "# all_patient_data_3 = []\n", "# all_patient_data_4 = []\n", "# all_patient_data_5 = []\n", "# all_patient_data_6 = []\n", "\n", "\n", "\n", "# 计数器\n", "json_file_count = 0\n", "\n", "#遍历每一行数据并输出每个病人的json文件\n", "for _,row in df.iterrows():\n", " patient_id = str(row['ID'])\n", "\n", " if patient_id not in existing_directories:\n", " print(f\"Patient ID {patient_id} does not exist in the directory, skipping.\")\n", " continue\n", "\n", " #构建病历号对应的.png文件夹\n", " patient_folder_png=os.path.join(random_slicer_dir,patient_id)\n", " #获取文件夹下所有的.png文件\n", " png_files=[f for f in os.listdir(patient_folder_png) if f.endswith('.png')]\n", "\n", "\n", " #没有找到png文件，跳过改病人\n", " if not os.path.exists(patient_folder_png):\n", " print(f\"Directory {patient_folder_png} does not exist, skipping this patient.\")\n", " continue #跳过该病人\n", "\n", " # 只有一张 .png 图片，直接取第一个文件\n", " png_file = png_files[0]\n", " # 获取该 .png 文件的路径\n", " image_path = os.path.join(patient_folder_png, png_file)\n", " # 去掉 .png 扩展名作为 ID\n", " image_id = os.path.splitext(png_file)[0]\n", " \n", " #定义根目录\n", " root_dir = '/home/kyr/Dataset/Qwen2_5vl' #Qwen2_5vl的地址\n", " #获取相对路径\n", " image_path_relative = os.path.relpath(image_path, root_dir)\n", " \n", " \n", "\n", " sex ='male' if row['gender']=='1' else 'female'#根据性别字段的值进行转换，1：male 2:female\n", "\n", " who_type_mapping ={\n", " '1': '1:Benign or low grade malignant' ,\n", " '2': '2:Low grade malignant whth proliferation and invasion ability',\n", " '3': '3:Higher malignant degree'\n", " }\n", " who_type = who_type_mapping.get(str(row['WHO histological type']), 'Warning') #若row['WHO病理类型']的值不在字典的键中，get方法将返回默认值'Warning'\n", "\n", " smoke='Smiking' if row['Smoke']=='1' else 'Non-smoking'\n", " drink = 'Drinking' if row['Drink']=='1' else 'Non-drinking'\n", " family_history_of_cancer='Yes' if row['Family history of cancer']=='1' else 'No'\n", "\n", " t_stage_mapping={\n", " '1':'T1:The tumor diameter is less than or equal to 3 cm, and is confined to the lung tissue.',\n", " '2':'T2:The tumor diameter is greater than 3 cm but less than or equal to 7 cm, or it invades the lung lobe without involving adjacent structures.',\n", " '3':'T3:The tumor invades adjacent structures such as the pleura, pericardium, aorta, esophagus, or the tumor diameter is greater than 7 cm.',\n", " '4':'T4:The tumor invades structures such as the mediastinum, major blood vessels, and chest wall.'\n", " }\n", " t_stage=t_stage_mapping.get(str(row['17T staging']),'Warning')\n", "\n", " n_stage_mapping = {\n", " '0':'N0:No lymph node metastasis.',\n", " '1':'N1:A small number of lymph node metastases, possibly located around the tumor.',\n", " '2':'N2:An increase in the number of lymph node metastases, possibly involving the central lymph nodes.',\n", " '3':'N3:Lymph node metastasis or fusion of lymph nodes into masses, possibly reaching the contralateral lymph nodes or distant lymph node metastasis.'\n", " \n", " }\n", " n_stage=n_stage_mapping.get(str(row['17N staging']),'Warning')\n", "\n", " all_stage_mapping={\n", " '1':'Stage1:The primary tumor is confined to the nasopharynx, with no lymph node metastasis or distant metastasis',\n", " '2':'Stage2:The primary tumor is confined to the nasopharynx but may have extended into surrounding tissues or there is unilateral lymph node metastasis (≤6 cm), with no distant metastasis.',\n", " '3':'Stage3:The primary tumor invades adjacent structures, or there is larger lymph node metastasis (>6 cm but ≤9 cm). The tumor may extend to regional lymph nodes but has not yet metastasized to distant organs.',\n", " '4':'Stage4:The primary tumor has spread extensively or there are widespread lymph node metastases, or distant metastasis has occurred. In this stage, the tumor may have invaded the skull base, brain, major blood vessels, or other vital structures, or it may have already spread to distant organs.'\n", " }\n", " all_stage=all_stage_mapping.get(str(row['17 total staging']),'Warning')\n", "\n", " concurrent_chemotherapy='Yes' if row['oncurrent chemotherapy']=='1' else 'No'\n", " in_addition_to_simple_targeting_at_the_same_time='Yes' if row['Concurrent chemotherapy']=='1' else 'No'\n", " supplementary_course = 'Yes' if row['Adjuvant Chemotherapy']=='1' else 'No'\n", " targeted_therapy = 'Yes' if row['Targeted Therapy']=='1' else 'No'\n", "\n", " def process_combined_cases(value):\n", " if isinstance(value, str):\n", " parts = value.split('+')\n", " # 确保每个部分都是数字，且每个部分唯一\n", " if len(parts) >= 2 and all(part.isdigit() for part in parts) and len(set(parts)) == len(parts):\n", " return int(random.choice(parts)) # 随机选择一个数值并返回\n", " return value # 如果不符合条件，直接返回原始值\n", "\n", " complication_mapping = {#组合处理+特殊字段处理\n", " '0':'0:Without any complications or symptoms.',\n", " '1':'1:Mild complications that may not require treatment or medical intervention. These complications usually do not affect daily activities.',\n", " '2':'2:Mild complications that require some medication or treatment to control, and may have a slight impact on daily activities.',\n", " '3':'3:Moderate complications, where the patient can manage daily activities but may be affected in certain tasks or require regular treatment.',\n", " '4':'4:Moderate complications that affect daily life, require medical intervention, and may lead to a decline in some aspects of self-care ability.',\n", " '5':'5:More severe complications that require the patient to be hospitalized or undergo more frequent medical interventions.',\n", " '6':'6:More severe complications, where the health of patient is significantly affected and they may be unable to perform normal daily activities. Hospitalization or more frequent medical interventions are required.',\n", " '7':'7:Severe complications, where the health of patient is significantly affected, with a potential life-threatening condition, requiring emergency medical intervention.',\n", " '8':'8:Extremely severe complications that may be life-threatening, with impaired function of multiple organ systems, requiring intensive care and emergency treatment.',\n", " '9':'9:Fatal complications, where the patient has not yet died but is in an extremely critical condition, urgently requiring medical intervention, with a low chance of survival.',\n", " '10':'10:Extremely severe complications, where the condition of patient may lead to death in a short period of time. The patient is in a terminal state, with little effect from medical intervention.',\n", " '11':'11:Critical condition, almost irreversible, with the vital signs patient extremely weakened.',\n", " '12':'12:Death or on the verge of death, the patient cannot be saved due to complications.',\n", " '3+巨细胞瘤术后':'3+巨细胞瘤术后:Post-surgical giant cell tumor with moderate complications, where the patient can manage daily activities but may be affected in certain tasks or require regular treatment. This may lead to a decline in immune function, treatment delays or interference, limitations in local function, and increased complexity in the treatment process, thus negatively impacting the prognosis of nasopharyngeal carcinoma.',\n", " '4+强直性脊柱炎':'4+强直性脊柱炎:Ankylosing spondylitis with moderate complications, affecting daily life, requiring medical intervention, and potentially leading to a decline in some aspects of self-care ability. At the same time, it may indirectly impact the treatment effectiveness and prognosis of nasopharyngeal carcinoma through factors such as immune system effects, drug interactions, comorbidity challenges, pain, and activity limitations.',\n", " '红斑狼疮：':'红斑狼疮:Systemic Lupus Erythematosus (SLE) is an autoimmune disease where the immune system attacks normal tissues, leading to multi-organ damage. For nasopharyngeal carcinoma patients, SLE can affect cancer treatment outcomes and prognosis through immune system abnormalities, drug interactions, comorbidities, chronic inflammation and fatigue, and increased risk of complications. SLE patients have impaired immune function, poorer treatment tolerance, and are more prone to complications during treatment, which may reduce the effectiveness of nasopharyngeal cancer therapy and hinder recovery.',\n", " '溃疡性结肠炎':'溃疡性结肠炎:Ulcerative colitis (UC) is a chronic intestinal inflammation treated with immunosuppressive drugs. For nasopharyngeal carcinoma patients, UC can impact cancer treatment outcomes and prognosis by suppressing the immune system, drug interactions, malnutrition, and chronic inflammation, increasing risks and complications during treatment.',\n", " '慢性荨麻疹':'慢性荨麻疹:Chronic urticaria (CU) is a skin condition caused by immune system abnormalities. For nasopharyngeal carcinoma patients, CU can impact cancer treatment outcomes through immune dysregulation, drug interactions, and increased risk of complications. In particular, the use of immunosuppressive drugs may weaken treatment effectiveness and increase the risk of side effects and infections.',\n", " '脑膜瘤术后':'脑膜瘤术后:Post-meningioma surgery patients often experience immune system suppression, drug interactions, and physical weakness, which can affect the treatment outcomes of nasopharyngeal carcinoma. During the recovery period, the suppressed immune system may reduce the response to radiotherapy and chemotherapy, while increasing the risk of infections and other complications, ultimately affecting treatment tolerance and prognosis.',\n", " '皮肌炎':'皮肌炎:Dermatomyositis is an autoimmune disease that may increase the risk of nasopharyngeal cancer and affect immune function and muscle health. For nasopharyngeal cancer patients, dermatomyositis can reduce treatment effectiveness, increase side effects, and lead to a poorer prognosis.',\n", " '双眼视网膜病变':'双眼视网膜病变:Bilateral retinopathy is a disease affecting the retinal vasculature and nerves, which in nasopharyngeal cancer patients may result from paraneoplastic immune response or radiation-induced damage. It may indicate distant metastasis or systemic vascular abnormalities, affecting prognosis and reducing treatment adherence and quality of life due to vision impairment.'\n", " }\n", " \n", " Complication = process_combined_cases(str(row['Comorbidity']))\n", " complication = complication_mapping.get(Complication)\n", "\n", " scheme_2_mapping={ #组合处理？\n", " '1':'TPF',\n", " '2':'PF',\n", " '3':'TF',\n", " '4':'GP',\n", " '5':'AP'\n", " #TPF:多柔比星（Docetaxel）+顺铂（Cisplatin）+氟尿嘧啶（5-Fluorouracil）\n", " #PF:顺铂（Cisplatin）+氟尿嘧啶（5-Fluorouracil，简称 5-FU）\n", " #TF:紫杉醇（Taxol 或 Paclitaxel）+氟尿嘧啶（5-Fluorouracil，简称 5-FU），\n", " #GP:吉西他滨（Gemcitabine）+顺铂（Cisplatin）\n", " #AP:多柔比星（Adriamycin，也叫 Doxorubicin）+环磷酰胺（Cyclophosphamide）\n", " }\n", " Scheme_2 = process_combined_cases(str(row['Scheme_2']))\n", " scheme_2 = scheme_2_mapping.get(Scheme_2)\n", "\n", " chemotherapeutics_mapping = { #组合处理？\n", " '0':'None',\n", " '1':'Cisplatin',\n", " '2':'Nedaplatin',\n", " '3':'Carboplatin',\n", " '4':'Oxaliplatin',\n", " '5':' Lobaplatin',\n", " '6':'Docetaxel',\n", " '7':'5-fu',\n", " '8':'Sunitinib/ Nivolumab',\n", " '9':'PF',\n", " '10':'TP',\n", " '11':'others'\n", " }\n", " Chemotherapeutics=process_combined_cases(str(row['Chemotherapy Drugs'])) \n", " chemotherapeutics = chemotherapeutics_mapping.get(Chemotherapeutics)\n", "\n", " metastatic_site_mapping={\n", " '0':'None',\n", " '1':'Bone',\n", " '2':'Lung',\n", " '3':'Liver',\n", " '4':'Multiple',\n", " '5':'Others'\n", " }\n", " metastatic_site=metastatic_site_mapping.get(str(row['Metastatic Site']),'Warning')\n", "\n", " labels_state_mapping ={\n", " '1':'dead',\n", " '0':'alive',\n", " }\n", "\n", " OS_state = labels_state_mapping.get(str(row['OS']),'Warning')\n", " DMFS_state = labels_state_mapping.get(str(row['DMFS']),'Warning')\n", " LRFS_state = labels_state_mapping.get(str(row['LRFS']),'Warning')\n", " RRFS_state = labels_state_mapping.get(str(row['RRFS']),'Warning')\n", " LRRFS_state = labels_state_mapping.get(str(row['LRRFS']),'Warning')\n", " DFS_state = labels_state_mapping.get(str(row['DFS']),'Warning')\n", "\n", "\n", " json_data_1= {\n", " \n", " \n", " \"conversations\":\n", " [\n", " {\n", "\n", " \"from\": \"human\",\n", " \"value\":f\"\"\n", " f\"The Sex is {sex};\\n\"\n", " f\"The WHO_type is {who_type};\\n\"\n", " f\"The Age is {row['Age']};\\n\"\n", " f\"The Smoke is {smoke};\"\n", " f\"The Drinke is {drink};\"\n", " f\"The family history of cancer is {family_history_of_cancer};\\n \"\n", " f\"The T_stage is {t_stage}; \\n\"\n", " f\"The N_stage is {n_stage}; \\n\"\n", " f\"The All_stage is {all_stage}; \\n\"\n", " f\"The EBV of before treatment is {round(row['Pre-treatment DNA'],4)};\\n\" #保留四位小数\n", " f\"The EBV of after treatment is {round(row['Post-induction chemotherapy EBV DNA'],4)}; \\n\"\n", " f\"The HGB is {round(row['HGB'],4)};\\n\"\n", " f\"The ALB is {round(row['ALB'],4)};\\n \"\n", " f\"The CRP is {round(row['CRP'],4)};\\n \"\n", " f\"The LDH is {round(row['LDH'],4)}; \\n\"\n", " f\"The Number of course is {row['Number of treatment cycles']};\\n \"\n", " f\"The Concurrent chemotherapy is {concurrent_chemotherapy};\\n \"\n", " f\"The In addition to simple targeting at the same time is {in_addition_to_simple_targeting_at_the_same_time}; \\n\"\n", " #f\"The scheme is {row['方案']};\\n \" #对预后任务的影响不明显\n", " f\"The Number of course_A is {row['Number of Treatment Courses_A']}; \\n\" #涉及处理组合数据\n", " f\"The Cumulative crisplatin dose is {row['Cumulative Cisplatin Dose']}; \\n\"\n", " f\"The Supplementary course is {supplementary_course}; \\n\"\n", " f\"The Targeted therapy is {targeted_therapy}; \\n\"\n", " f\"The Complication is {complication}; \\n\"\n", " f\"The Scheme_2 is {scheme_2}; \\n\"\n", " f\"The Chemotherapeutics is {chemotherapeutics};\\n \"\n", " f\"The Metastatic site is {metastatic_site};\\n\"\n", " f\"What is the patient's Overall Survival state and Overall Survival time?\\n\"\n", " \n", " \n", " },\n", " \n", " {\n", " \"from\": \"gpt\",\n", " \"value\":f\"The Overall Survival state is ### {OS_state} ### and Overall Survival time is ### {round(row['OS time new'],4)} ###\"\n", " \n", " }\n", " ]\n", " ,\n", " \"images\": \n", " [\n", " image_path_relative \n", " ]\n", "\n", " \n", "\n", " \n", " }\n", "\n", "\n", " \n", " #将所有病人的json数据添加到列表中\n", " all_patient_data_1.append(json_data_1)\n", " \n", " # 更新计数器\n", " json_file_count += 1\n", "\n", " # all_patient_data= all_patient_data_1+all_patient_data_2+all_patient_data_3+all_patient_data_4+all_patient_data_5+all_patient_data_6\n", " all_patient_data = all_patient_data_1\n", "\n", "\n", "\n", "#将所有病人的json数据保存到一个文件中\n", "output_file= os .path.join(output_dir,'train_OS_0319.json')\n", "with open(output_file,'w',encoding='utf-8')as json_file:\n", " json.dump(all_patient_data,json_file,ensure_ascii=False,indent=4)\n", "\n", "print(f\"The data of all patients have been successfully saved to {output_file}\")\n", "# 最后输出生成的 JSON 文件数量\n", "print(f\"All : {json_file_count}\")\n" ] }, { "cell_type": "code", "execution_count": 4, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Patient ID 0000293387_1 does not exist in the directory, skipping.\n", "Patient ID 0000293099_1 does not exist in the directory, skipping.\n", "Patient ID 0000232635 does not exist in the directory, skipping.\n", "Patient ID 0000279167_1 does not exist in the directory, skipping.\n", "Patient ID 0000292626_1 does not exist in the directory, skipping.\n", "Patient ID 0000268843 does not exist in the directory, skipping.\n", "Patient ID 0000257618 does not exist in the directory, skipping.\n", "Patient ID 0000298175_1 does not exist in the directory, skipping.\n", "Patient ID 0000286479 does not exist in the directory, skipping.\n", "Patient ID 0000278905 does not exist in the directory, skipping.\n", "Patient ID 0000280323_1 does not exist in the directory, skipping.\n", "Patient ID 0000257528 does not exist in the directory, skipping.\n", "Patient ID 0000261839_1 does not exist in the directory, skipping.\n", "Patient ID 0000245870_1 does not exist in the directory, skipping.\n", "Patient ID 0000268504 does not exist in the directory, skipping.\n", "Patient ID 0000271157_1 does not exist in the directory, skipping.\n", "Patient ID 0000241900_1 does not exist in the directory, skipping.\n", "Patient ID 0000269151_1 does not exist in the directory, skipping.\n", "Patient ID 0000308992_1 does not exist in the directory, skipping.\n", "Patient ID 0000278621_1 does not exist in the directory, skipping.\n", "Patient ID 0000248891_1 does not exist in the directory, skipping.\n", "Patient ID 0000284687_1 does not exist in the directory, skipping.\n", "Patient ID 0000260213 does not exist in the directory, skipping.\n", "Patient ID 0000272021_1 does not exist in the directory, skipping.\n", "Patient ID 0000312845_1 does not exist in the directory, skipping.\n", "Patient ID 00C1113916_1 does not exist in the directory, skipping.\n", "Patient ID 0000298323 does not exist in the directory, skipping.\n", "Patient ID 0000253162_1 does not exist in the directory, skipping.\n", "Patient ID 0000305471 does not exist in the directory, skipping.\n", "Patient ID 0000238087_1 does not exist in the directory, skipping.\n", "Patient ID 0000290273 does not exist in the directory, skipping.\n", "Patient ID 0000279724_1 does not exist in the directory, skipping.\n", "Patient ID 0000288070_1 does not exist in the directory, skipping.\n", "Patient ID 0000343586 does not exist in the directory, skipping.\n", "Patient ID 0000267484_1 does not exist in the directory, skipping.\n", "Patient ID 0000283283_1 does not exist in the directory, skipping.\n", "Patient ID 0000300298_1 does not exist in the directory, skipping.\n", "Patient ID 0000273070_1 does not exist in the directory, skipping.\n", "Patient ID 0000232724_1 does not exist in the directory, skipping.\n", "Patient ID 0000312261 does not exist in the directory, skipping.\n", "Patient ID 0000267209_1 does not exist in the directory, skipping.\n", "Patient ID 0000277869_1 does not exist in the directory, skipping.\n", "Patient ID 0000274588_1 does not exist in the directory, skipping.\n", "Patient ID 0000264822_1 does not exist in the directory, skipping.\n", "Patient ID 0000274789 does not exist in the directory, skipping.\n", "Patient ID 0000292156 does not exist in the directory, skipping.\n", "Patient ID 0000249885_1 does not exist in the directory, skipping.\n", "Patient ID 0000304660_1 does not exist in the directory, skipping.\n", "Patient ID 0000322644 does not exist in the directory, skipping.\n", "Patient ID 0000246974 does not exist in the directory, skipping.\n", "Patient ID 0000284366 does not exist in the directory, skipping.\n", "Patient ID 0000282002_1 does not exist in the directory, skipping.\n", "Patient ID 0000286520_1 does not exist in the directory, skipping.\n", "Patient ID 0000302389_1 does not exist in the directory, skipping.\n", "Patient ID 0000234661_1 does not exist in the directory, skipping.\n", "Patient ID 0000248281_1 does not exist in the directory, skipping.\n", "Patient ID 0000281613 does not exist in the directory, skipping.\n", "Patient ID 0000266998_1 does not exist in the directory, skipping.\n", "Patient ID 0000263496 does not exist in the directory, skipping.\n", "Patient ID 0000245599_1 does not exist in the directory, skipping.\n", "Patient ID 0000309235 does not exist in the directory, skipping.\n", "Patient ID 0000237773_1 does not exist in the directory, skipping.\n", "Patient ID 0000308896 does not exist in the directory, skipping.\n", "Patient ID 0000301982_1 does not exist in the directory, skipping.\n", "Patient ID 0000308606 does not exist in the directory, skipping.\n", "Patient ID 0000297982 does not exist in the directory, skipping.\n", "Patient ID 0000280378 does not exist in the directory, skipping.\n", "Patient ID 0000304885_1 does not exist in the directory, skipping.\n", "Patient ID 0000265451_1 does not exist in the directory, skipping.\n", "Patient ID 0000273661_1 does not exist in the directory, skipping.\n", "Patient ID 0000259448 does not exist in the directory, skipping.\n", "Patient ID 0000307320_1 does not exist in the directory, skipping.\n", "Patient ID 0000298902_1 does not exist in the directory, skipping.\n", "Patient ID 0000234802_1 does not exist in the directory, skipping.\n", "Patient ID 0000276921 does not exist in the directory, skipping.\n", "Patient ID 0000255984_1 does not exist in the directory, skipping.\n", "Patient ID 0000282281_1 does not exist in the directory, skipping.\n", "Patient ID 0000256497_1 does not exist in the directory, skipping.\n", "Patient ID 0000310972 does not exist in the directory, skipping.\n", "Patient ID 0000274360 does not exist in the directory, skipping.\n", "Patient ID 0000304489 does not exist in the directory, skipping.\n", "Patient ID 0000258637_1 does not exist in the directory, skipping.\n", "Patient ID 0000248157 does not exist in the directory, skipping.\n", "Patient ID 0000289813 does not exist in the directory, skipping.\n", "Patient ID 0000265790_1 does not exist in the directory, skipping.\n", "Patient ID 0000247793_1 does not exist in the directory, skipping.\n", "Patient ID 0000284734_1 does not exist in the directory, skipping.\n", "Patient ID 0000242134_1 does not exist in the directory, skipping.\n", "Patient ID 0000238035_1 does not exist in the directory, skipping.\n", "Patient ID 0000296870_1 does not exist in the directory, skipping.\n", "Patient ID 0000305452_1 does not exist in the directory, skipping.\n", "Patient ID 0000285173 does not exist in the directory, skipping.\n", "Patient ID 0000233512_1 does not exist in the directory, skipping.\n", "Patient ID 0000310015 does not exist in the directory, skipping.\n", "Patient ID 0000307229 does not exist in the directory, skipping.\n", "Patient ID 0000274945_1 does not exist in the 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"Patient ID 0000254594 does not exist in the directory, skipping.\n", "Patient ID 00C1090356 does not exist in the directory, skipping.\n", "Patient ID 0000276422 does not exist in the directory, skipping.\n", "Patient ID 0000271216 does not exist in the directory, skipping.\n", "Patient ID 0000269109 does not exist in the directory, skipping.\n", "Patient ID 0000253461 does not exist in the directory, skipping.\n", "Patient ID 00C1082591 does not exist in the directory, skipping.\n", "Patient ID 0000267289 does not exist in the directory, skipping.\n", "Patient ID 0000243616_1 does not exist in the directory, skipping.\n", "Patient ID 0000258105 does not exist in the directory, skipping.\n", "Patient ID 0000250277_1 does not exist in the directory, skipping.\n", "Patient ID 0000259582 does not exist in the directory, skipping.\n", "Patient ID 0000254368 does not exist in the directory, skipping.\n", "Patient ID 0000246867 does not exist in the directory, skipping.\n", "Patient ID 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directory, skipping.\n", "Patient ID 0000309401 does not exist in the directory, skipping.\n", "Patient ID 0000310325 does not exist in the directory, skipping.\n", "Patient ID 0000310070 does not exist in the directory, skipping.\n", "Patient ID 0000309579 does not exist in the directory, skipping.\n", "Patient ID 0000308774 does not exist in the directory, skipping.\n", "Patient ID 0000308240 does not exist in the directory, skipping.\n", "Patient ID 0000309315 does not exist in the directory, skipping.\n", "Patient ID 0000308556 does not exist in the directory, skipping.\n", "Patient ID 0000307960 does not exist in the directory, skipping.\n", "Patient ID 0000307685 does not exist in the directory, skipping.\n", "Patient ID 0000308419 does not exist in the directory, skipping.\n", "Patient ID 0000307384 does not exist in the directory, skipping.\n", "Patient ID 0000309386 does not exist in the directory, skipping.\n", "Patient ID 0000308229 does not exist in the directory, 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"Patient ID 0000306664 does not exist in the directory, skipping.\n", "Patient ID 0000305731 does not exist in the directory, skipping.\n", "Patient ID 0000306117 does not exist in the directory, skipping.\n", "Patient ID 0000304789 does not exist in the directory, skipping.\n", "Patient ID 0000303945 does not exist in the directory, skipping.\n", "Patient ID 0000304275 does not exist in the directory, skipping.\n", "Patient ID 0000302829 does not exist in the directory, skipping.\n", "Patient ID 0000302647 does not exist in the directory, skipping.\n", "Patient ID 0000302880 does not exist in the directory, skipping.\n", "Patient ID 0000304176 does not exist in the directory, skipping.\n", "Patient ID 0000302914 does not exist in the directory, skipping.\n", "Patient ID 0000302568 does not exist in the directory, skipping.\n", "Patient ID 0000302628 does not exist in the directory, skipping.\n", "Patient ID 0000302361 does not exist in the directory, skipping.\n", "Patient ID 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directory, skipping.\n", "Patient ID 0000300409 does not exist in the directory, skipping.\n", "Patient ID 0000271547 does not exist in the directory, skipping.\n", "Patient ID 0000299103 does not exist in the directory, skipping.\n", "Patient ID 0000298216 does not exist in the directory, skipping.\n", "Patient ID 0000299399 does not exist in the directory, skipping.\n", "Patient ID 0000297647 does not exist in the directory, skipping.\n", "Patient ID 0000297782 does not exist in the directory, skipping.\n", "Patient ID 0000298793 does not exist in the directory, skipping.\n", "Patient ID 0000272666 does not exist in the directory, skipping.\n", "Patient ID 0000296931 does not exist in the directory, skipping.\n", "Patient ID 0000296960 does not exist in the directory, skipping.\n", "Patient ID 0000297046 does not exist in the directory, skipping.\n", "Patient ID 0000297587 does not exist in the directory, skipping.\n", "Patient ID 0000297875 does not exist in the directory, 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"Patient ID 0000297181 does not exist in the directory, skipping.\n", "Patient ID 0000295832 does not exist in the directory, skipping.\n", "Patient ID 0000295784 does not exist in the directory, skipping.\n", "Patient ID 0000296004 does not exist in the directory, skipping.\n", "Patient ID 0000294985 does not exist in the directory, skipping.\n", "Patient ID 0000295728 does not exist in the directory, skipping.\n", "Patient ID 0000294061 does not exist in the directory, skipping.\n", "Patient ID 0000294534 does not exist in the directory, skipping.\n", "Patient ID 0000294377 does not exist in the directory, skipping.\n", "Patient ID 0000294080 does not exist in the directory, skipping.\n", "Patient ID 0000295145 does not exist in the directory, skipping.\n", "Patient ID 0000292963 does not exist in the directory, skipping.\n", "Patient ID 0000293506 does not exist in the directory, skipping.\n", "Patient ID 0000293609 does not exist in the directory, skipping.\n", "Patient ID 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directory, skipping.\n", "Patient ID 0000290839 does not exist in the directory, skipping.\n", "Patient ID 0000290920 does not exist in the directory, skipping.\n", "Patient ID 00C1129012 does not exist in the directory, skipping.\n", "Patient ID 0000290416 does not exist in the directory, skipping.\n", "Patient ID 0000290739 does not exist in the directory, skipping.\n", "Patient ID 0000289845 does not exist in the directory, skipping.\n", "Patient ID 0000290114 does not exist in the directory, skipping.\n", "Patient ID 0000291634 does not exist in the directory, skipping.\n", "Patient ID 0000291092 does not exist in the directory, skipping.\n", "Patient ID 0000290488 does not exist in the directory, skipping.\n", "Patient ID 0000289453 does not exist in the directory, skipping.\n", "Patient ID 0000289189 does not exist in the directory, skipping.\n", "Patient ID 0000290074 does not exist in the directory, skipping.\n", "Patient ID 0000289280 does not exist in the directory, 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"Patient ID 0000288429 does not exist in the directory, skipping.\n", "Patient ID 0000288072 does not exist in the directory, skipping.\n", "Patient ID 0000286515 does not exist in the directory, skipping.\n", "Patient ID 0000286580 does not exist in the directory, skipping.\n", "Patient ID 0000286569 does not exist in the directory, skipping.\n", "Patient ID 0000287442 does not exist in the directory, skipping.\n", "Patient ID 0000287541 does not exist in the directory, skipping.\n", "Patient ID 0000287152 does not exist in the directory, skipping.\n", "Patient ID 0000287655 does not exist in the directory, skipping.\n", "Patient ID 0000285534 does not exist in the directory, skipping.\n", "Patient ID 0000285442 does not exist in the directory, skipping.\n", "Patient ID 0000285921 does not exist in the directory, skipping.\n", "Patient ID 0000286826 does not exist in the directory, skipping.\n", "Patient ID 0000286048 does not exist in the directory, skipping.\n", "Patient ID 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directory, skipping.\n", "Patient ID 0000282101 does not exist in the directory, skipping.\n", "Patient ID 0000282488 does not exist in the directory, skipping.\n", "Patient ID 0000282344 does not exist in the directory, skipping.\n", "Patient ID 0000282583 does not exist in the directory, skipping.\n", "Patient ID 0000281499 does not exist in the directory, skipping.\n", "Patient ID 00C1119281 does not exist in the directory, skipping.\n", "Patient ID 0000283230 does not exist in the directory, skipping.\n", "Patient ID 0000280635 does not exist in the directory, skipping.\n", "Patient ID 0000281162 does not exist in the directory, skipping.\n", "Patient ID 0000281455 does not exist in the directory, skipping.\n", "Patient ID 0000282323 does not exist in the directory, skipping.\n", "Patient ID 0000281030 does not exist in the directory, skipping.\n", "Patient ID 0000280898 does not exist in the directory, skipping.\n", "Patient ID 0000280364 does not exist in the directory, skipping.\n", "Patient ID 0000280577 does not exist in the directory, skipping.\n", "Patient ID 0000280582 does not exist in the directory, skipping.\n", "Patient ID 0000280694 does not exist in the directory, skipping.\n", "Patient ID 0000280777 does not exist in the directory, skipping.\n", "Patient ID 0000282593 does not exist in the directory, skipping.\n", "Patient ID 0000280187 does not exist in the directory, skipping.\n", "Patient ID 0000279894 does not exist in the directory, skipping.\n", "Patient ID 0000280099 does not exist in the directory, skipping.\n", "Patient ID 0000279653 does not exist in the directory, skipping.\n", "Patient ID 0000279652 does not exist in the directory, skipping.\n", "Patient ID 0000280624 does not exist in the directory, skipping.\n", "Patient ID 0000279379 does not exist in the directory, skipping.\n", "Patient ID 0000279495 does not exist in the directory, skipping.\n", "Patient ID 0000280503 does not exist in the directory, skipping.\n", "Patient ID 0000257702 does not exist in the directory, skipping.\n", "Patient ID 0000280222 does not exist in the directory, skipping.\n", "Patient ID 0000281731 does not exist in the directory, skipping.\n", "Patient ID 0000279415 does not exist in the directory, skipping.\n", "Patient ID 0000279054 does not exist in the directory, skipping.\n", "Patient ID 0000278864 does not exist in the directory, skipping.\n", "Patient ID 0000278318 does not exist in the directory, skipping.\n", "Patient ID 0000278637 does not exist in the directory, skipping.\n", "Patient ID 0000280151 does not exist in the directory, skipping.\n", "Patient ID 0000279068 does not exist in the directory, skipping.\n", "Patient ID 0000280943 does not exist in the directory, skipping.\n", "Patient ID 0000279328 does not exist in the directory, skipping.\n", "Patient ID 0000280493 does not exist in the directory, skipping.\n", "Patient ID 0000279985 does not exist in the directory, skipping.\n", "Patient ID 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exist in the directory, skipping.\n", "Patient ID 0000275048 does not exist in the directory, skipping.\n", "Patient ID 0000275954 does not exist in the directory, skipping.\n", "Patient ID 0000274463 does not exist in the directory, skipping.\n", "Patient ID 0000274780 does not exist in the directory, skipping.\n", "Patient ID 0000276895 does not exist in the directory, skipping.\n", "Patient ID 0000252857 does not exist in the directory, skipping.\n", "Patient ID 0000274122 does not exist in the directory, skipping.\n", "Patient ID 0000278843 does not exist in the directory, skipping.\n", "Patient ID 0000273913 does not exist in the directory, skipping.\n", "Patient ID 0000273914 does not exist in the directory, skipping.\n", "Patient ID 0000275897 does not exist in the directory, skipping.\n", "Patient ID 0000276043 does not exist in the directory, skipping.\n", "Patient ID 0000274517 does not exist in the directory, skipping.\n", "Patient ID 0000274657 does not exist in the directory, skipping.\n", "Patient ID 0000273188 does not exist in the directory, skipping.\n", "Patient ID 0000274243 does not exist in the directory, skipping.\n", "Patient ID 0000274268 does not exist in the directory, skipping.\n", "Patient ID 0000273157 does not exist in the directory, skipping.\n", "Patient ID 0000272558 does not exist in the directory, skipping.\n", "Patient ID 00C1109541 does not exist in the directory, skipping.\n", "Patient ID 0000273559 does not exist in the directory, skipping.\n", "Patient ID 0000272922 does not exist in the directory, skipping.\n", "Patient ID 0000273184 does not exist in the directory, skipping.\n", "Patient ID 0000274963 does not exist in the directory, skipping.\n", "Patient ID 0000272483 does not exist in the directory, skipping.\n", "Patient ID 0000272649 does not exist in the directory, skipping.\n", "Patient ID 0000271203 does not exist in the directory, skipping.\n", "Patient ID 0000272802 does not exist in the directory, skipping.\n", "Patient ID 00C1108216 does not exist in the directory, skipping.\n", "Patient ID 0000271630 does not exist in the directory, skipping.\n", "Patient ID 0000270793 does not exist in the directory, skipping.\n", "Patient ID 0000270726 does not exist in the directory, skipping.\n", "Patient ID 0000271193 does not exist in the directory, skipping.\n", "Patient ID 0000271298 does not exist in the directory, skipping.\n", "Patient ID 00C1108274 does not exist in the directory, skipping.\n", "Patient ID 0000272313 does not exist in the directory, skipping.\n", "Patient ID 0000271583 does not exist in the directory, skipping.\n", "Patient ID 0000272232 does not exist in the directory, skipping.\n", "Patient ID 0000271099 does not exist in the directory, skipping.\n", "Patient ID 0000270116 does not exist in the directory, skipping.\n", "Patient ID 0000270245 does not exist in the directory, skipping.\n", "Patient ID 0000270426 does not exist in the directory, skipping.\n", "Patient ID 0000271246 does not exist in the directory, skipping.\n", "Patient ID 0000270579 does not exist in the directory, skipping.\n", "Patient ID 0000270335 does not exist in the directory, skipping.\n", "Patient ID 0000269660 does not exist in the directory, skipping.\n", "Patient ID 0000270707 does not exist in the directory, skipping.\n", "Patient ID 0000269152 does not exist in the directory, skipping.\n", "Patient ID 0000269669 does not exist in the directory, skipping.\n", "Patient ID 0000269944 does not exist in the directory, skipping.\n", "Patient ID 0000270621 does not exist in the directory, skipping.\n", "Patient ID 00C1110577 does not exist in the directory, skipping.\n", "Patient ID 0000270155 does not exist in the directory, skipping.\n", "Patient ID 0000269639 does not exist in the directory, skipping.\n", "Patient ID 0000268880 does not exist in the directory, skipping.\n", "Patient ID 0000268949 does not exist in the directory, skipping.\n", "Patient ID 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directory, skipping.\n", "Patient ID 0000266399 does not exist in the directory, skipping.\n", "Patient ID 0000265812 does not exist in the directory, skipping.\n", "Patient ID 0000265075 does not exist in the directory, skipping.\n", "Patient ID 0000266152 does not exist in the directory, skipping.\n", "Patient ID 0000264786 does not exist in the directory, skipping.\n", "Patient ID 0000266347 does not exist in the directory, skipping.\n", "Patient ID 0000263274 does not exist in the directory, skipping.\n", "Patient ID 0000264117 does not exist in the directory, skipping.\n", "Patient ID 0000263765 does not exist in the directory, skipping.\n", "Patient ID 0000264485 does not exist in the directory, skipping.\n", "Patient ID 0000263801 does not exist in the directory, skipping.\n", "Patient ID 0000266021 does not exist in the directory, skipping.\n", "Patient ID 0000242267 does not exist in the directory, skipping.\n", "Patient ID 0000263576 does not exist in the directory, 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"Patient ID 0000264276 does not exist in the directory, skipping.\n", "Patient ID 0000262212 does not exist in the directory, skipping.\n", "Patient ID 0000262128 does not exist in the directory, skipping.\n", "Patient ID 0000261448 does not exist in the directory, skipping.\n", "Patient ID 0000261696 does not exist in the directory, skipping.\n", "Patient ID 0000240518 does not exist in the directory, skipping.\n", "Patient ID 0000267124 does not exist in the directory, skipping.\n", "Patient ID 0000264601 does not exist in the directory, skipping.\n", "Patient ID 0000260229 does not exist in the directory, skipping.\n", "Patient ID 0000267095 does not exist in the directory, skipping.\n", "Patient ID 0000261536 does not exist in the directory, skipping.\n", "Patient ID 0000260830 does not exist in the directory, skipping.\n", "Patient ID 0000262092 does not exist in the directory, skipping.\n", "Patient ID 0000262626 does not exist in the directory, skipping.\n", "Patient ID 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directory, skipping.\n", "Patient ID 0000256126 does not exist in the directory, skipping.\n", "Patient ID 0000255931 does not exist in the directory, skipping.\n", "Patient ID 0000256088 does not exist in the directory, skipping.\n", "Patient ID 0000256547 does not exist in the directory, skipping.\n", "Patient ID 0000255858 does not exist in the directory, skipping.\n", "Patient ID 0000255977 does not exist in the directory, skipping.\n", "Patient ID 0000256365 does not exist in the directory, skipping.\n", "Patient ID 0000257142 does not exist in the directory, skipping.\n", "Patient ID 0000256092 does not exist in the directory, skipping.\n", "Patient ID 0000255206 does not exist in the directory, skipping.\n", "Patient ID 0000256951 does not exist in the directory, skipping.\n", "Patient ID 0000235208 does not exist in the directory, skipping.\n", "Patient ID 0000255603 does not exist in the directory, skipping.\n", "Patient ID 0000254937 does not exist in the directory, skipping.\n", "Patient ID 0000254435 does not exist in the directory, skipping.\n", "Patient ID 0000255262 does not exist in the directory, skipping.\n", "Patient ID 0000254647 does not exist in the directory, skipping.\n", "Patient ID 0000254728 does not exist in the directory, skipping.\n", "Patient ID 0000255180 does not exist in the directory, skipping.\n", "Patient ID 0000254371 does not exist in the directory, skipping.\n", "Patient ID 0000255821 does not exist in the directory, skipping.\n", "Patient ID 0000254522 does not exist in the directory, skipping.\n", "Patient ID 0000255165 does not exist in the directory, skipping.\n", "Patient ID 0000253523 does not exist in the directory, skipping.\n", "Patient ID 0000254723 does not exist in the directory, skipping.\n", "Patient ID 0000253353 does not exist in the directory, skipping.\n", "Patient ID 0000254076 does not exist in the directory, skipping.\n", "Patient ID 0000253649 does not exist in the directory, skipping.\n", "Patient ID 0000254531 does not exist in the directory, skipping.\n", "Patient ID 0000251579 does not exist in the directory, skipping.\n", "Patient ID 0000251017 does not exist in the directory, skipping.\n", "Patient ID 0000252298 does not exist in the directory, skipping.\n", "Patient ID 0000252786 does not exist in the directory, skipping.\n", "Patient ID 0000251256 does not exist in the directory, skipping.\n", "Patient ID 0000252690 does not exist in the directory, skipping.\n", "Patient ID 0000252252 does not exist in the directory, skipping.\n", "Patient ID 00C1083891 does not exist in the directory, skipping.\n", "Patient ID 0000250537 does not exist in the directory, skipping.\n", "Patient ID 0000250004 does not exist in the directory, skipping.\n", "Patient ID 0000250257 does not exist in the directory, skipping.\n", "Patient ID 0000251369 does not exist in the directory, skipping.\n", "Patient ID 0000250336 does not exist in the directory, skipping.\n", "Patient ID 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exist in the directory, skipping.\n", "Patient ID 0000248167 does not exist in the directory, skipping.\n", "Patient ID 0000248028 does not exist in the directory, skipping.\n", "Patient ID 0000246182 does not exist in the directory, skipping.\n", "Patient ID 0000246374 does not exist in the directory, skipping.\n", "Patient ID 0000246685 does not exist in the directory, skipping.\n", "Patient ID 0000246912 does not exist in the directory, skipping.\n", "Patient ID 0000248056 does not exist in the directory, skipping.\n", "Patient ID 0000246392 does not exist in the directory, skipping.\n", "Patient ID 0000245744 does not exist in the directory, skipping.\n", "Patient ID 0000245462 does not exist in the directory, skipping.\n", "Patient ID 0000246227 does not exist in the directory, skipping.\n", "Patient ID 0000245767 does not exist in the directory, skipping.\n", "Patient ID 0000245792 does not exist in the directory, skipping.\n", "Patient ID 0000245710 does not exist in the directory, skipping.\n", "Patient ID 0000244878 does not exist in the directory, skipping.\n", "Patient ID 0000245738 does not exist in the directory, skipping.\n", "Patient ID 0000245917 does not exist in the directory, skipping.\n", "Patient ID 00C1077175 does not exist in the directory, skipping.\n", "Patient ID 0000244342 does not exist in the directory, skipping.\n", "Patient ID 0000244658 does not exist in the directory, skipping.\n", "Patient ID 0000243904 does not exist in the directory, skipping.\n", "Patient ID 0000243334 does not exist in the directory, skipping.\n", "Patient ID 0000243333 does not exist in the directory, skipping.\n", "Patient ID 0000243739 does not exist in the directory, skipping.\n", "Patient ID 0000244093 does not exist in the directory, skipping.\n", "Patient ID 0000242977 does not exist in the directory, skipping.\n", "Patient ID 0000245339 does not exist in the directory, skipping.\n", "Patient ID 0000245454 does not exist in the directory, skipping.\n", "Patient ID 0000242866 does not exist in the directory, skipping.\n", "Patient ID 0000244868 does not exist in the directory, skipping.\n", "Patient ID 0000242297 does not exist in the directory, skipping.\n", "Patient ID 0000242880 does not exist in the directory, skipping.\n", "Patient ID 0000241199 does not exist in the directory, skipping.\n", "Patient ID 0000241524 does not exist in the directory, skipping.\n", "Patient ID 0000241781 does not exist in the directory, skipping.\n", "Patient ID 0000241335 does not exist in the directory, skipping.\n", "Patient ID 0000240338 does not exist in the directory, skipping.\n", "Patient ID 0000240179 does not exist in the directory, skipping.\n", "Patient ID 0000240130 does not exist in the directory, skipping.\n", "Patient ID 0000239997 does not exist in the directory, skipping.\n", "Patient ID 0000239994 does not exist in the directory, skipping.\n", "Patient ID 0000239657 does not exist in the directory, skipping.\n", "Patient ID 0000239794 does not exist in the directory, skipping.\n", "Patient ID 0000239187 does not exist in the directory, skipping.\n", "Patient ID 0000240215 does not exist in the directory, skipping.\n", "Patient ID 0000239470 does not exist in the directory, skipping.\n", "Patient ID 0000239475 does not exist in the directory, skipping.\n", "Patient ID 0000238666 does not exist in the directory, skipping.\n", "Patient ID 0000237337 does not exist in the directory, skipping.\n", "Patient ID 0000237328 does not exist in the directory, skipping.\n", "Patient ID 0000237567 does not exist in the directory, skipping.\n", "Patient ID 00C1068568 does not exist in the directory, skipping.\n", "Patient ID 0000236160 does not exist in the directory, skipping.\n", "Patient ID 0000235830 does not exist in the directory, skipping.\n", "Patient ID 0000235474 does not exist in the directory, skipping.\n", "Patient ID 0000235317 does not exist in the directory, skipping.\n", "Patient ID 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exist in the directory, skipping.\n", "Patient ID 00C1135566 does not exist in the directory, skipping.\n", "Patient ID 0000279724_2 does not exist in the directory, skipping.\n", "Patient ID 0000279724_3 does not exist in the directory, skipping.\n", "Patient ID 0000279724_4 does not exist in the directory, skipping.\n", "Patient ID 0000279724_5 does not exist in the directory, skipping.\n", "Patient ID 0000279724_6 does not exist in the directory, skipping.\n", "Patient ID 0000279724_7 does not exist in the directory, skipping.\n", "Patient ID 0000279724_8 does not exist in the directory, skipping.\n", "Patient ID 0000279724_9 does not exist in the directory, skipping.\n", "Patient ID 0000301982_2 does not exist in the directory, skipping.\n", "Patient ID 0000301982_3 does not exist in the directory, skipping.\n", "Patient ID 0000301982_4 does not exist in the directory, skipping.\n", "Patient ID 0000301982_5 does not exist in the directory, skipping.\n", "Patient ID 0000301982_6 does not exist in the directory, skipping.\n", "Patient ID 0000301982_7 does not exist in the directory, skipping.\n", "Patient ID 0000301982_8 does not exist in the directory, skipping.\n", "Patient ID 0000301982_9 does not exist in the directory, skipping.\n", "Patient ID 0000292626_2 does not exist in the directory, skipping.\n", "Patient ID 0000292626_3 does not exist in the directory, skipping.\n", "Patient ID 0000292626_4 does not exist in the directory, skipping.\n", "Patient ID 0000292626_5 does not exist in the directory, skipping.\n", "Patient ID 0000292626_6 does not exist in the directory, skipping.\n", "Patient ID 0000292626_7 does not exist in the directory, skipping.\n", "Patient ID 0000292626_8 does not exist in the directory, skipping.\n", "Patient ID 0000292626_9 does not exist in the directory, skipping.\n", "Patient ID 0000272021_2 does not exist in the directory, skipping.\n", "Patient ID 0000272021_3 does not exist in the directory, skipping.\n", "Patient ID 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"Patient ID 0000282281_2 does not exist in the directory, skipping.\n", "Patient ID 0000282281_3 does not exist in the directory, skipping.\n", "Patient ID 0000282281_4 does not exist in the directory, skipping.\n", "Patient ID 0000282281_5 does not exist in the directory, skipping.\n", "Patient ID 0000282281_6 does not exist in the directory, skipping.\n", "Patient ID 0000282281_7 does not exist in the directory, skipping.\n", "Patient ID 0000282281_8 does not exist in the directory, skipping.\n", "Patient ID 0000282281_9 does not exist in the directory, skipping.\n", "Patient ID 0000267209_2 does not exist in the directory, skipping.\n", "Patient ID 0000267209_3 does not exist in the directory, skipping.\n", "Patient ID 0000267209_4 does not exist in the directory, skipping.\n", "Patient ID 0000267209_5 does not exist in the directory, skipping.\n", "Patient ID 0000267209_6 does not exist in the directory, skipping.\n", "Patient ID 0000267209_7 does not exist in the directory, skipping.\n", "Patient ID 0000267209_8 does not exist in the directory, skipping.\n", "Patient ID 0000267209_9 does not exist in the directory, skipping.\n", "Patient ID 0000278621_2 does not exist in the directory, skipping.\n", "Patient ID 0000278621_3 does not exist in the directory, skipping.\n", "Patient ID 0000278621_4 does not exist in the directory, skipping.\n", "Patient ID 0000278621_5 does not exist in the directory, skipping.\n", "Patient ID 0000278621_6 does not exist in the directory, skipping.\n", "Patient ID 0000278621_7 does not exist in the directory, skipping.\n", "Patient ID 0000278621_8 does not exist in the directory, skipping.\n", "Patient ID 0000278621_9 does not exist in the directory, skipping.\n", "Patient ID 0000237435_2 does not exist in the directory, skipping.\n", "Patient ID 0000237435_3 does not exist in the directory, skipping.\n", "Patient ID 0000237435_4 does not exist in the directory, skipping.\n", "Patient ID 0000237435_5 does not exist in the directory, skipping.\n", "Patient ID 0000237435_6 does not exist in the directory, skipping.\n", "Patient ID 0000237435_7 does not exist in the directory, skipping.\n", "Patient ID 0000237435_8 does not exist in the directory, skipping.\n", "Patient ID 0000237435_9 does not exist in the directory, skipping.\n", "Patient ID 0000266998_2 does not exist in the directory, skipping.\n", "Patient ID 0000266998_3 does not exist in the directory, skipping.\n", "Patient ID 0000266998_4 does not exist in the directory, skipping.\n", "Patient ID 0000266998_5 does not exist in the directory, skipping.\n", "Patient ID 0000266998_6 does not exist in the directory, skipping.\n", "Patient ID 0000266998_7 does not exist in the directory, skipping.\n", "Patient ID 0000266998_8 does not exist in the directory, skipping.\n", "Patient ID 0000266998_9 does not exist in the directory, skipping.\n", "Patient ID 0000258249_2 does not exist in the directory, skipping.\n", "Patient ID 0000258249_3 does not exist in the directory, skipping.\n", "Patient ID 0000258249_4 does not exist in the directory, skipping.\n", "Patient ID 0000258249_5 does not exist in the directory, skipping.\n", "Patient ID 0000258249_6 does not exist in the directory, skipping.\n", "Patient ID 0000258249_7 does not exist in the directory, skipping.\n", "Patient ID 0000258249_8 does not exist in the directory, skipping.\n", "Patient ID 0000258249_9 does not exist in the directory, skipping.\n", "Patient ID 0000298175_2 does not exist in the directory, skipping.\n", "Patient ID 0000298175_3 does not exist in the directory, skipping.\n", "Patient ID 0000298175_4 does not exist in the directory, skipping.\n", "Patient ID 0000298175_5 does not exist in the directory, skipping.\n", "Patient ID 0000298175_6 does not exist in the directory, skipping.\n", "Patient ID 0000298175_7 does not exist in the directory, skipping.\n", "Patient ID 0000298175_8 does not exist in the directory, skipping.\n", "Patient ID 0000298175_9 does not exist in the directory, skipping.\n", "Patient ID 0000234661_2 does not exist in the directory, skipping.\n", "Patient ID 0000234661_3 does not exist in the directory, skipping.\n", "Patient ID 0000234661_4 does not exist in the directory, skipping.\n", "Patient ID 0000234661_5 does not exist in the directory, skipping.\n", "Patient ID 0000234661_6 does not exist in the directory, skipping.\n", "Patient ID 0000234661_7 does not exist in the directory, skipping.\n", "Patient ID 0000234661_8 does not exist in the directory, skipping.\n", "Patient ID 0000234661_9 does not exist in the directory, skipping.\n", "Patient ID 0000255984_2 does not exist in the directory, skipping.\n", "Patient ID 0000255984_3 does not exist in the directory, skipping.\n", "Patient ID 0000255984_4 does not exist in the directory, skipping.\n", "Patient ID 0000255984_5 does not exist in the directory, skipping.\n", "Patient ID 0000255984_6 does not exist in the directory, skipping.\n", "Patient ID 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"Patient ID 0000275246_5 does not exist in the directory, skipping.\n", "Patient ID 0000275246_6 does not exist in the directory, skipping.\n", "Patient ID 0000275246_7 does not exist in the directory, skipping.\n", "Patient ID 0000275246_8 does not exist in the directory, skipping.\n", "Patient ID 0000275246_9 does not exist in the directory, skipping.\n", "Patient ID 0000308992_2 does not exist in the directory, skipping.\n", "Patient ID 0000308992_3 does not exist in the directory, skipping.\n", "Patient ID 0000308992_4 does not exist in the directory, skipping.\n", "Patient ID 0000308992_5 does not exist in the directory, skipping.\n", "Patient ID 0000308992_6 does not exist in the directory, skipping.\n", "Patient ID 0000308992_7 does not exist in the directory, skipping.\n", "Patient ID 0000308992_8 does not exist in the directory, skipping.\n", "Patient ID 0000308992_9 does not exist in the directory, skipping.\n", "Patient ID 0000312845_2 does not exist in the directory, skipping.\n", "Patient ID 0000312845_3 does not exist in the directory, skipping.\n", "Patient ID 0000312845_4 does not exist in the directory, skipping.\n", "Patient ID 0000312845_5 does not exist in the directory, skipping.\n", "Patient ID 0000312845_6 does not exist in the directory, skipping.\n", "Patient ID 0000312845_7 does not exist in the directory, skipping.\n", "Patient ID 0000312845_8 does not exist in the directory, skipping.\n", "Patient ID 0000312845_9 does not exist in the directory, skipping.\n", "Patient ID 0000264822_2 does not exist in the directory, skipping.\n", "Patient ID 0000264822_3 does not exist in the directory, skipping.\n", "Patient ID 0000264822_4 does not exist in the directory, skipping.\n", "Patient ID 0000264822_5 does not exist in the directory, skipping.\n", "Patient ID 0000264822_6 does not exist in the directory, skipping.\n", "Patient ID 0000264822_7 does not exist in the directory, skipping.\n", "Patient ID 0000264822_8 does not exist in the directory, skipping.\n", "Patient ID 0000264822_9 does not exist in the directory, skipping.\n", "Patient ID 0000298902_2 does not exist in the directory, skipping.\n", "Patient ID 0000298902_3 does not exist in the directory, skipping.\n", "Patient ID 0000298902_4 does not exist in the directory, skipping.\n", "Patient ID 0000298902_5 does not exist in the directory, skipping.\n", "Patient ID 0000298902_6 does not exist in the directory, skipping.\n", "Patient ID 0000298902_7 does not exist in the directory, skipping.\n", "Patient ID 0000298902_8 does not exist in the directory, skipping.\n", "Patient ID 0000298902_9 does not exist in the directory, skipping.\n", "Patient ID 0000296870_2 does not exist in the directory, skipping.\n", "Patient ID 0000296870_3 does not exist in the directory, skipping.\n", "Patient ID 0000296870_4 does not exist in the directory, skipping.\n", "Patient ID 0000296870_5 does not exist in the directory, skipping.\n", "Patient ID 0000296870_6 does not exist in the directory, skipping.\n", "Patient ID 0000296870_7 does not exist in the directory, skipping.\n", "Patient ID 0000296870_8 does not exist in the directory, skipping.\n", "Patient ID 0000296870_9 does not exist in the directory, skipping.\n", "Patient ID 0000279167_2 does not exist in the directory, skipping.\n", "Patient ID 0000279167_3 does not exist in the directory, skipping.\n", "Patient ID 0000279167_4 does not exist in the directory, skipping.\n", "Patient ID 0000279167_5 does not exist in the directory, skipping.\n", "Patient ID 0000279167_6 does not exist in the directory, skipping.\n", "Patient ID 0000279167_7 does not exist in the directory, skipping.\n", "Patient ID 0000279167_8 does not exist in the directory, skipping.\n", "Patient ID 0000279167_9 does not exist in the directory, skipping.\n", "Patient ID 0000241900_2 does not exist in the directory, skipping.\n", "Patient ID 0000241900_3 does not exist in the directory, skipping.\n", "Patient ID 0000241900_4 does not exist in the directory, skipping.\n", "Patient ID 0000241900_5 does not exist in the directory, skipping.\n", "Patient ID 0000241900_6 does not exist in the directory, skipping.\n", "Patient ID 0000241900_7 does not exist in the directory, skipping.\n", "Patient ID 0000241900_8 does not exist in the directory, skipping.\n", "Patient ID 0000241900_9 does not exist in the directory, skipping.\n", "Patient ID 0000269151_2 does not exist in the directory, skipping.\n", "Patient ID 0000269151_3 does not exist in the directory, skipping.\n", "Patient ID 0000269151_4 does not exist in the directory, skipping.\n", "Patient ID 0000269151_5 does not exist in the directory, skipping.\n", "Patient ID 0000269151_6 does not exist in the directory, skipping.\n", "Patient ID 0000269151_7 does not exist in the directory, skipping.\n", "Patient ID 0000269151_8 does not exist in the directory, skipping.\n", "Patient ID 0000269151_9 does not exist in the directory, skipping.\n", "Patient ID 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"Patient ID 0000274588_8 does not exist in the directory, skipping.\n", "Patient ID 0000274588_9 does not exist in the directory, skipping.\n", "Patient ID 0000258637_2 does not exist in the directory, skipping.\n", "Patient ID 0000258637_3 does not exist in the directory, skipping.\n", "Patient ID 0000258637_4 does not exist in the directory, skipping.\n", "Patient ID 0000258637_5 does not exist in the directory, skipping.\n", "Patient ID 0000258637_6 does not exist in the directory, skipping.\n", "Patient ID 0000258637_7 does not exist in the directory, skipping.\n", "Patient ID 0000258637_8 does not exist in the directory, skipping.\n", "Patient ID 0000258637_9 does not exist in the directory, skipping.\n", "Patient ID 0000280323_2 does not exist in the directory, skipping.\n", "Patient ID 0000280323_3 does not exist in the directory, skipping.\n", "Patient ID 0000280323_4 does not exist in the directory, skipping.\n", "Patient ID 0000280323_5 does not exist in the directory, 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directory, skipping.\n", "Patient ID 0000261839_4 does not exist in the directory, skipping.\n", "Patient ID 0000261839_5 does not exist in the directory, skipping.\n", "Patient ID 0000261839_6 does not exist in the directory, skipping.\n", "Patient ID 0000261839_7 does not exist in the directory, skipping.\n", "Patient ID 0000261839_8 does not exist in the directory, skipping.\n", "Patient ID 0000261839_9 does not exist in the directory, skipping.\n", "Patient ID 0000283283_2 does not exist in the directory, skipping.\n", "Patient ID 0000283283_3 does not exist in the directory, skipping.\n", "Patient ID 0000283283_4 does not exist in the directory, skipping.\n", "Patient ID 0000283283_5 does not exist in the directory, skipping.\n", "Patient ID 0000283283_6 does not exist in the directory, skipping.\n", "Patient ID 0000283283_7 does not exist in the directory, skipping.\n", "Patient ID 0000283283_8 does not exist in the directory, skipping.\n", "Patient ID 0000283283_9 does not exist in the directory, skipping.\n", "Patient ID 0000249692_2 does not exist in the directory, skipping.\n", "Patient ID 0000249692_3 does not exist in the directory, skipping.\n", "Patient ID 0000249692_4 does not exist in the directory, skipping.\n", "Patient ID 0000249692_5 does not exist in the directory, skipping.\n", "Patient ID 0000249692_6 does not exist in the directory, skipping.\n", "Patient ID 0000249692_7 does not exist in the directory, skipping.\n", "Patient ID 0000249692_8 does not exist in the directory, skipping.\n", "Patient ID 0000249692_9 does not exist in the directory, skipping.\n", "Patient ID 0000284734_2 does not exist in the directory, skipping.\n", "Patient ID 0000284734_3 does not exist in the directory, skipping.\n", "Patient ID 0000284734_4 does not exist in the directory, skipping.\n", "Patient ID 0000284734_5 does not exist in the directory, skipping.\n", "Patient ID 0000284734_6 does not exist in the directory, skipping.\n", "Patient ID 0000284734_7 does not exist in the directory, skipping.\n", "Patient ID 0000284734_8 does not exist in the directory, skipping.\n", "Patient ID 0000284734_9 does not exist in the directory, skipping.\n", "Patient ID 0000286520_2 does not exist in the directory, skipping.\n", "Patient ID 0000286520_3 does not exist in the directory, skipping.\n", "Patient ID 0000286520_4 does not exist in the directory, skipping.\n", "Patient ID 0000286520_5 does not exist in the directory, skipping.\n", "Patient ID 0000286520_6 does not exist in the directory, skipping.\n", "Patient ID 0000286520_7 does not exist in the directory, skipping.\n", "Patient ID 0000286520_8 does not exist in the directory, skipping.\n", "Patient ID 0000286520_9 does not exist in the directory, skipping.\n", "Patient ID 0000279251_2 does not exist in the directory, skipping.\n", "Patient ID 0000279251_3 does not exist in the directory, skipping.\n", "Patient ID 0000279251_4 does not exist in the directory, skipping.\n", "Patient ID 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"Patient ID 0000307320_3 does not exist in the directory, skipping.\n", "Patient ID 0000307320_4 does not exist in the directory, skipping.\n", "Patient ID 0000307320_5 does not exist in the directory, skipping.\n", "Patient ID 0000307320_6 does not exist in the directory, skipping.\n", "Patient ID 0000307320_7 does not exist in the directory, skipping.\n", "Patient ID 0000307320_8 does not exist in the directory, skipping.\n", "Patient ID 0000307320_9 does not exist in the directory, skipping.\n", "Patient ID 0000273661_2 does not exist in the directory, skipping.\n", "Patient ID 0000273661_3 does not exist in the directory, skipping.\n", "Patient ID 0000273661_4 does not exist in the directory, skipping.\n", "Patient ID 0000273661_5 does not exist in the directory, skipping.\n", "Patient ID 0000273661_6 does not exist in the directory, skipping.\n", "Patient ID 0000273661_7 does not exist in the directory, skipping.\n", "Patient ID 0000273661_8 does not exist in the directory, skipping.\n", "Patient ID 0000273661_9 does not exist in the directory, skipping.\n", "Patient ID 0000302389_2 does not exist in the directory, skipping.\n", "Patient ID 0000302389_3 does not exist in the directory, skipping.\n", "Patient ID 0000302389_4 does not exist in the directory, skipping.\n", "Patient ID 0000302389_5 does not exist in the directory, skipping.\n", "Patient ID 0000302389_6 does not exist in the directory, skipping.\n", "Patient ID 0000302389_7 does not exist in the directory, skipping.\n", "Patient ID 0000302389_8 does not exist in the directory, skipping.\n", "Patient ID 0000302389_9 does not exist in the directory, skipping.\n", "Patient ID 0000234802_2 does not exist in the directory, skipping.\n", "Patient ID 0000234802_3 does not exist in the directory, skipping.\n", "Patient ID 0000234802_4 does not exist in the directory, skipping.\n", "Patient ID 0000234802_5 does not exist in the directory, skipping.\n", "Patient ID 0000234802_6 does not exist in the directory, skipping.\n", "Patient ID 0000234802_7 does not exist in the directory, skipping.\n", "Patient ID 0000234802_8 does not exist in the directory, skipping.\n", "Patient ID 0000234802_9 does not exist in the directory, skipping.\n", "Patient ID 0000305452_2 does not exist in the directory, skipping.\n", "Patient ID 0000305452_3 does not exist in the directory, skipping.\n", "Patient ID 0000305452_4 does not exist in the directory, skipping.\n", "Patient ID 0000305452_5 does not exist in the directory, skipping.\n", "Patient ID 0000305452_6 does not exist in the directory, skipping.\n", "Patient ID 0000305452_7 does not exist in the directory, skipping.\n", "Patient ID 0000305452_8 does not exist in the directory, skipping.\n", "Patient ID 0000305452_9 does not exist in the directory, skipping.\n", "Patient ID 0000238035_2 does not exist in the directory, skipping.\n", "Patient ID 0000238035_3 does not exist in the directory, skipping.\n", "Patient ID 0000238035_4 does not exist in the directory, skipping.\n", "Patient ID 0000238035_5 does not exist in the directory, skipping.\n", "Patient ID 0000238035_6 does not exist in the directory, skipping.\n", "Patient ID 0000238035_7 does not exist in the directory, skipping.\n", "Patient ID 0000238035_8 does not exist in the directory, skipping.\n", "Patient ID 0000238035_9 does not exist in the directory, skipping.\n", "Patient ID 0000265451_2 does not exist in the directory, skipping.\n", "Patient ID 0000265451_3 does not exist in the directory, skipping.\n", "Patient ID 0000265451_4 does not exist in the directory, skipping.\n", "Patient ID 0000265451_5 does not exist in the directory, skipping.\n", "Patient ID 0000265451_6 does not exist in the directory, skipping.\n", "Patient ID 0000265451_7 does not exist in the directory, skipping.\n", "Patient ID 0000265451_8 does not exist in the directory, skipping.\n", "Patient ID 0000265451_9 does not exist in the directory, skipping.\n", "Patient ID 0000248891_2 does not exist in the directory, skipping.\n", "Patient ID 0000248891_3 does not exist in the directory, skipping.\n", "Patient ID 0000248891_4 does not exist in the directory, skipping.\n", "Patient ID 0000248891_5 does not exist in the directory, skipping.\n", "Patient ID 0000248891_6 does not exist in the directory, skipping.\n", "Patient ID 0000248891_7 does not exist in the directory, skipping.\n", "Patient ID 0000248891_8 does not exist in the directory, skipping.\n", "Patient ID 0000248891_9 does not exist in the directory, skipping.\n", "Patient ID 0000245599_2 does not exist in the directory, skipping.\n", "Patient ID 0000245599_3 does not exist in the directory, skipping.\n", "Patient ID 0000245599_4 does not exist in the directory, skipping.\n", "Patient ID 0000245599_5 does not exist in the directory, skipping.\n", "Patient ID 0000245599_6 does not exist in the directory, skipping.\n", "Patient ID 0000245599_7 does not exist in the directory, skipping.\n", "Patient ID 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"Patient ID 0000247793_6 does not exist in the directory, skipping.\n", "Patient ID 0000247793_7 does not exist in the directory, skipping.\n", "Patient ID 0000247793_8 does not exist in the directory, skipping.\n", "Patient ID 0000247793_9 does not exist in the directory, skipping.\n", "Patient ID 0000283926_2 does not exist in the directory, skipping.\n", "Patient ID 0000283926_3 does not exist in the directory, skipping.\n", "Patient ID 0000283926_4 does not exist in the directory, skipping.\n", "Patient ID 0000283926_5 does not exist in the directory, skipping.\n", "Patient ID 0000283926_6 does not exist in the directory, skipping.\n", "Patient ID 0000283926_7 does not exist in the directory, skipping.\n", "Patient ID 0000283926_8 does not exist in the directory, skipping.\n", "Patient ID 0000283926_9 does not exist in the directory, skipping.\n", "Patient ID 0000304885_2 does not exist in the directory, skipping.\n", "Patient ID 0000304885_3 does not exist in the directory, skipping.\n", "Patient ID 0000304885_4 does not exist in the directory, skipping.\n", "Patient ID 0000304885_5 does not exist in the directory, skipping.\n", "Patient ID 0000304885_6 does not exist in the directory, skipping.\n", "Patient ID 0000304885_7 does not exist in the directory, skipping.\n", "Patient ID 0000304885_8 does not exist in the directory, skipping.\n", "Patient ID 0000304885_9 does not exist in the directory, skipping.\n", "Patient ID 0000243616_2 does not exist in the directory, skipping.\n", "Patient ID 0000243616_3 does not exist in the directory, skipping.\n", "Patient ID 0000243616_4 does not exist in the directory, skipping.\n", "Patient ID 0000243616_5 does not exist in the directory, skipping.\n", "Patient ID 0000243616_6 does not exist in the directory, skipping.\n", "Patient ID 0000243616_7 does not exist in the directory, skipping.\n", "Patient ID 0000243616_8 does not exist in the directory, skipping.\n", "Patient ID 0000243616_9 does not exist in the directory, skipping.\n", "Patient ID 0000279540_2 does not exist in the directory, skipping.\n", "Patient ID 0000279540_3 does not exist in the directory, skipping.\n", "Patient ID 0000279540_4 does not exist in the directory, skipping.\n", "Patient ID 0000279540_5 does not exist in the directory, skipping.\n", "Patient ID 0000279540_6 does not exist in the directory, skipping.\n", "Patient ID 0000279540_7 does not exist in the directory, skipping.\n", "Patient ID 0000279540_8 does not exist in the directory, skipping.\n", "Patient ID 0000279540_9 does not exist in the directory, skipping.\n", "Patient ID 0000249885_2 does not exist in the directory, skipping.\n", "Patient ID 0000249885_3 does not exist in the directory, skipping.\n", "Patient ID 0000249885_4 does not exist in the directory, skipping.\n", "Patient ID 0000249885_5 does not exist in the directory, skipping.\n", "Patient ID 0000249885_6 does not exist in the directory, skipping.\n", "Patient ID 0000249885_7 does not exist in the directory, skipping.\n", "Patient ID 0000249885_8 does not exist in the directory, skipping.\n", "Patient ID 0000249885_9 does not exist in the directory, skipping.\n", "Patient ID 0000274945_2 does not exist in the directory, skipping.\n", "Patient ID 0000274945_3 does not exist in the directory, skipping.\n", "Patient ID 0000274945_4 does not exist in the directory, skipping.\n", "Patient ID 0000274945_5 does not exist in the directory, skipping.\n", "Patient ID 0000274945_6 does not exist in the directory, skipping.\n", "Patient ID 0000274945_7 does not exist in the directory, skipping.\n", "Patient ID 0000274945_8 does not exist in the directory, skipping.\n", "Patient ID 0000274945_9 does not exist in the directory, skipping.\n", "Patient ID 0000304660_2 does not exist in the directory, skipping.\n", "Patient ID 0000304660_3 does not exist in the directory, skipping.\n", "Patient ID 0000304660_4 does not exist in the directory, skipping.\n", "Patient ID 0000304660_5 does not exist in the directory, skipping.\n", "Patient ID 0000304660_6 does not exist in the directory, skipping.\n", "Patient ID 0000304660_7 does not exist in the directory, skipping.\n", "Patient ID 0000304660_8 does not exist in the directory, skipping.\n", "Patient ID 0000304660_9 does not exist in the directory, skipping.\n", "Patient ID 0000273070_2 does not exist in the directory, skipping.\n", "Patient ID 0000273070_3 does not exist in the directory, skipping.\n", "Patient ID 0000273070_4 does not exist in the directory, skipping.\n", "Patient ID 0000273070_5 does not exist in the directory, skipping.\n", "Patient ID 0000273070_6 does not exist in the directory, skipping.\n", "Patient ID 0000273070_7 does not exist in the directory, skipping.\n", "Patient ID 0000273070_8 does not exist in the directory, skipping.\n", "Patient ID 0000273070_9 does not exist in the directory, skipping.\n", "Patient ID 0000277869_2 does not exist in the directory, skipping.\n", "Patient ID 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"Patient ID 0000245870_9 does not exist in the directory, skipping.\n", "Patient ID 0000275271_2 does not exist in the directory, skipping.\n", "Patient ID 0000275271_3 does not exist in the directory, skipping.\n", "Patient ID 0000275271_4 does not exist in the directory, skipping.\n", "Patient ID 0000275271_5 does not exist in the directory, skipping.\n", "Patient ID 0000275271_6 does not exist in the directory, skipping.\n", "Patient ID 0000275271_7 does not exist in the directory, skipping.\n", "Patient ID 0000275271_8 does not exist in the directory, skipping.\n", "Patient ID 0000275271_9 does not exist in the directory, skipping.\n", "Patient ID 0000297492_2 does not exist in the directory, skipping.\n", "Patient ID 0000297492_3 does not exist in the directory, skipping.\n", "Patient ID 0000297492_4 does not exist in the directory, skipping.\n", "Patient ID 0000297492_5 does not exist in the directory, skipping.\n", "Patient ID 0000297492_6 does not exist in the directory, skipping.\n", "Patient ID 0000297492_7 does not exist in the directory, skipping.\n", "Patient ID 0000297492_8 does not exist in the directory, skipping.\n", "Patient ID 0000297492_9 does not exist in the directory, skipping.\n", "Patient ID 0000233512_2 does not exist in the directory, skipping.\n", "Patient ID 0000233512_3 does not exist in the directory, skipping.\n", "Patient ID 0000233512_4 does not exist in the directory, skipping.\n", "Patient ID 0000233512_5 does not exist in the directory, skipping.\n", "Patient ID 0000233512_6 does not exist in the directory, skipping.\n", "Patient ID 0000233512_7 does not exist in the directory, skipping.\n", "Patient ID 0000233512_8 does not exist in the directory, skipping.\n", "Patient ID 0000233512_9 does not exist in the directory, skipping.\n", "Patient ID 0000237773_2 does not exist in the directory, skipping.\n", "Patient ID 0000237773_3 does not exist in the directory, skipping.\n", "Patient ID 0000237773_4 does not exist in the directory, skipping.\n", "Patient ID 0000237773_5 does not exist in the directory, skipping.\n", "Patient ID 0000237773_6 does not exist in the directory, skipping.\n", "Patient ID 0000237773_7 does not exist in the directory, skipping.\n", "Patient ID 0000237773_8 does not exist in the directory, skipping.\n", "Patient ID 0000237773_9 does not exist in the directory, skipping.\n", "Patient ID 0000288070_2 does not exist in the directory, skipping.\n", "Patient ID 0000288070_3 does not exist in the directory, skipping.\n", "Patient ID 0000288070_4 does not exist in the directory, skipping.\n", "Patient ID 0000288070_5 does not exist in the directory, skipping.\n", "Patient ID 0000288070_6 does not exist in the directory, skipping.\n", "Patient ID 0000288070_7 does not exist in the directory, skipping.\n", "Patient ID 0000288070_8 does not exist in the directory, skipping.\n", "Patient ID 0000288070_9 does not exist in the directory, skipping.\n", "Patient ID 0000265790_2 does not exist in the directory, skipping.\n", "Patient ID 0000265790_3 does not exist in the directory, skipping.\n", "Patient ID 0000265790_4 does not exist in the directory, skipping.\n", "Patient ID 0000265790_5 does not exist in the directory, skipping.\n", "Patient ID 0000265790_6 does not exist in the directory, skipping.\n", "Patient ID 0000265790_7 does not exist in the directory, skipping.\n", "Patient ID 0000265790_8 does not exist in the directory, skipping.\n", "Patient ID 0000265790_9 does not exist in the directory, skipping.\n", "Patient ID 0000293387_2 does not exist in the directory, skipping.\n", "Patient ID 0000293387_3 does not exist in the directory, skipping.\n", "Patient ID 0000293387_4 does not exist in the directory, skipping.\n", "Patient ID 0000293387_5 does not exist in the directory, skipping.\n", "Patient ID 0000293387_6 does not exist in the directory, skipping.\n", "Patient ID 0000293387_7 does not exist in the directory, skipping.\n", "Patient ID 0000293387_8 does not exist in the directory, skipping.\n", "Patient ID 0000293387_9 does not exist in the directory, skipping.\n", "Patient ID 0000267484_2 does not exist in the directory, skipping.\n", "Patient ID 0000267484_3 does not exist in the directory, skipping.\n", "Patient ID 0000267484_4 does not exist in the directory, skipping.\n", "Patient ID 0000267484_5 does not exist in the directory, skipping.\n", "Patient ID 0000267484_6 does not exist in the directory, skipping.\n", "Patient ID 0000267484_7 does not exist in the directory, skipping.\n", "Patient ID 0000267484_8 does not exist in the directory, skipping.\n", "Patient ID 0000267484_9 does not exist in the directory, skipping.\n", "Patient ID 0000256497_2 does not exist in the directory, skipping.\n", "Patient ID 0000256497_3 does not exist in the directory, skipping.\n", "Patient ID 0000256497_4 does not exist in the directory, skipping.\n", "Patient ID 0000256497_5 does not exist in the directory, skipping.\n", "Patient ID 0000256497_6 does not exist in the directory, skipping.\n", "Patient ID 0000256497_7 does not exist in the directory, skipping.\n", "Patient ID 0000256497_8 does not exist in the directory, skipping.\n", "Patient ID 0000256497_9 does not exist in the directory, skipping.\n", "Patient ID 00C1113916_2 does not exist in the directory, skipping.\n", "Patient ID 00C1113916_3 does not exist in the directory, skipping.\n", "Patient ID 00C1113916_4 does not exist in the directory, skipping.\n", "Patient ID 00C1113916_5 does not exist in the directory, skipping.\n", "Patient ID 00C1113916_6 does not exist in the directory, skipping.\n", "Patient ID 00C1113916_7 does not exist in the directory, skipping.\n", "Patient ID 00C1113916_8 does not exist in the directory, skipping.\n", "Patient ID 00C1113916_9 does not exist in the directory, skipping.\n", "Patient ID 0000282002_2 does not exist in the directory, skipping.\n", "Patient ID 0000282002_3 does not exist in the directory, skipping.\n", "Patient ID 0000282002_4 does not exist in the directory, skipping.\n", "Patient ID 0000282002_5 does not exist in the directory, skipping.\n", "Patient ID 0000282002_6 does not exist in the directory, skipping.\n", "Patient ID 0000282002_7 does not exist in the directory, skipping.\n", "Patient ID 0000282002_8 does not exist in the directory, skipping.\n", "Patient ID 0000282002_9 does not exist in the directory, skipping.\n", "Patient ID 0000295663_2 does not exist in the directory, skipping.\n", "Patient ID 0000295663_3 does not exist in the directory, skipping.\n", "Patient ID 0000295663_4 does not exist in the directory, skipping.\n", "Patient ID 0000295663_5 does not exist in the directory, skipping.\n", "Patient ID 0000295663_6 does not exist in the directory, skipping.\n", "Patient ID 0000295663_7 does not exist in the directory, skipping.\n", "Patient ID 0000295663_8 does not exist in the directory, skipping.\n", "Patient ID 0000295663_9 does not exist in the directory, skipping.\n", "Patient ID 0000238087_2 does not exist in the directory, skipping.\n", "Patient ID 0000238087_3 does not exist in the directory, skipping.\n", "Patient ID 0000238087_4 does not exist in the directory, skipping.\n", "Patient ID 0000238087_5 does not exist in the directory, skipping.\n", "Patient ID 0000238087_6 does not exist in the directory, skipping.\n", "Patient ID 0000238087_7 does not exist in the directory, skipping.\n", "Patient ID 0000238087_8 does not exist in the directory, skipping.\n", "Patient ID 0000238087_9 does not exist in the directory, skipping.\n", "Patient ID 0000287095_2 does not exist in the directory, skipping.\n", "Patient ID 0000287095_3 does not exist in the directory, skipping.\n", "Patient ID 0000287095_4 does not exist in the directory, skipping.\n", "Patient ID 0000287095_5 does not exist in the directory, skipping.\n", "Patient ID 0000287095_6 does not exist in the directory, skipping.\n", "Patient ID 0000287095_7 does not exist in the directory, skipping.\n", "Patient ID 0000287095_8 does not exist in the directory, skipping.\n", "Patient ID 0000287095_9 does not exist in the directory, skipping.\n", "Patient ID 0000284687_2 does not exist in the directory, skipping.\n", "Patient ID 0000284687_3 does not exist in the directory, skipping.\n", "Patient ID 0000284687_4 does not exist in the directory, skipping.\n", "Patient ID 0000284687_5 does not exist in the directory, skipping.\n", "Patient ID 0000284687_6 does not exist in the directory, skipping.\n", "Patient ID 0000284687_7 does not exist in the directory, skipping.\n", "Patient ID 0000284687_8 does not exist in the directory, skipping.\n", "Patient ID 0000284687_9 does not exist in the directory, skipping.\n", "Patient ID 0000300298_2 does not exist in the directory, skipping.\n", "Patient ID 0000300298_3 does not exist in the directory, skipping.\n", "Patient ID 0000300298_4 does not exist in the directory, skipping.\n", "Patient ID 0000300298_5 does not exist in the directory, skipping.\n", "Patient ID 0000300298_6 does not exist in the directory, skipping.\n", "Patient ID 0000300298_7 does not exist in the directory, skipping.\n", "Patient ID 0000300298_8 does not exist in the directory, skipping.\n", "Patient ID 0000300298_9 does not exist in the directory, skipping.\n", "Patient ID 0000242134_2 does not exist in the directory, skipping.\n", "Patient ID 0000242134_3 does not exist in the directory, skipping.\n", "Patient ID 0000242134_4 does not exist in the directory, skipping.\n", "Patient ID 0000242134_5 does not exist in the directory, skipping.\n", "Patient ID 0000242134_6 does not exist in the directory, skipping.\n", "Patient ID 0000242134_7 does not exist in the directory, skipping.\n", "Patient ID 0000242134_8 does not exist in the directory, skipping.\n", "Patient ID 0000242134_9 does not exist in the directory, skipping.\n", "Patient ID 0000250277_2 does not exist in the directory, skipping.\n", "Patient ID 0000250277_3 does not exist in the directory, skipping.\n", "Patient ID 0000250277_4 does not exist in the directory, skipping.\n", "Patient ID 0000250277_5 does not exist in the directory, skipping.\n", "Patient ID 0000250277_6 does not exist in the directory, skipping.\n", "Patient ID 0000250277_7 does not exist in the directory, skipping.\n", "Patient ID 0000250277_8 does not exist in the directory, skipping.\n", "Patient ID 0000250277_9 does not exist in the directory, skipping.\n", "The data of all patients have been successfully saved to /home/kyr/Dataset/MRI_815/json_files_2025/0319_json/OS/test_OS_0319.json\n", "All : 80\n" ] } ], "source": [ "#kyr 中山json文件提取 整合标签的状态和具体的数值 OS json文件生成 2025-0301 最完整的一版\n", "import pandas as pd\n", "import json\n", "import os\n", "import random\n", "\n", "csv_file= '/home/kyr/Dataset/MRI_815/train_and_test/train_and_test_0226_OS/expand_table_0301_OS.csv'\n", "df = pd.read_csv(csv_file)\n", "\n", "# 处理缺失值，将缺失值填充为0\n", "df = df.fillna(0)\n", "\n", "#输出文件夹的目录\n", "output_dir = '/home/kyr/Dataset/MRI_815/json_files_2025/0319_json/OS'\n", "os.makedirs(output_dir,exist_ok=True)\n", "\n", "# 指定需要检查的目录\n", "check_dir = '/home/xtm/kyr_data/original_data/combined/After_registed'\n", "random_slicer_dir = '/home/kyr/Dataset/Qwen2_5vl/0319_image/train_and_test_0226_OS/OS_test_80' #图片路径\n", "\n", "# 获取该目录下的所有子目录名\n", "existing_directories = os.listdir(random_slicer_dir)#只有当病历号在指定目录下的子目录中存在时，程序才会处理该病人的数据并生成 JSON 文件。\n", "\n", " \n", "\n", "#检查random_slicer_dir目录下的所有子目录\n", "#existing_png_dirs = os.listdir(random_slicer_dir)\n", "\n", "\n", "# 存储所有病人的 JSON 数据的列表\n", "all_patient_data_1 = []\n", "# all_patient_data_2 = []\n", "# all_patient_data_3 = []\n", "# all_patient_data_4 = []\n", "# all_patient_data_5 = []\n", "# all_patient_data_6 = []\n", "\n", "# 计数器\n", "json_file_count = 0\n", "\n", "#遍历每一行数据并输出每个病人的json文件\n", "for _,row in df.iterrows():\n", " patient_id = str(row['ID'])\n", "\n", " if patient_id not in existing_directories:\n", " print(f\"Patient ID {patient_id} does not exist in the directory, skipping.\")\n", " continue\n", "\n", " #构建病历号对应的.png文件夹\n", " patient_folder_png=os.path.join(random_slicer_dir,patient_id)\n", " #获取文件夹下所有的.png文件\n", " png_files=[f for f in os.listdir(patient_folder_png) if f.endswith('.png')]\n", "\n", "\n", " #没有找到png文件，跳过改病人\n", " if not os.path.exists(patient_folder_png):\n", " print(f\"Directory {patient_folder_png} does not exist, skipping this patient.\")\n", " continue #跳过该病人\n", "\n", " # 只有一张 .png 图片，直接取第一个文件\n", " png_file = png_files[0]\n", " # 获取该 .png 文件的路径\n", " image_path = os.path.join(patient_folder_png, png_file)\n", " # 去掉 .png 扩展名作为 ID\n", " image_id = os.path.splitext(png_file)[0]\n", " \n", " #定义根目录\n", " root_dir = '/home/kyr/Dataset/Qwen2_5vl' #Qwen2_5vl的地址\n", " #获取相对路径\n", " image_path_relative = os.path.relpath(image_path, root_dir)\n", "\n", " sex ='male' if row['gender']=='1' else 'female'#根据性别字段的值进行转换，1：male 2:female\n", "\n", " who_type_mapping ={\n", " '1': '1:Benign or low grade malignant' ,\n", " '2': '2:Low grade malignant whth proliferation and invasion ability',\n", " '3': '3:Higher malignant degree'\n", " }\n", " who_type = who_type_mapping.get(str(row['WHO histological type']), 'Warning') #若row['WHO病理类型']的值不在字典的键中，get方法将返回默认值'Warning'\n", "\n", " smoke='Smiking' if row['Smoke']=='1' else 'Non-smoking'\n", " drink = 'Drinking' if row['Drink']=='1' else 'Non-drinking'\n", " family_history_of_cancer='Yes' if row['Family history of cancer']=='1' else 'No'\n", "\n", " t_stage_mapping={\n", " '1':'T1:The tumor diameter is less than or equal to 3 cm, and is confined to the lung tissue.',\n", " '2':'T2:The tumor diameter is greater than 3 cm but less than or equal to 7 cm, or it invades the lung lobe without involving adjacent structures.',\n", " '3':'T3:The tumor invades adjacent structures such as the pleura, pericardium, aorta, esophagus, or the tumor diameter is greater than 7 cm.',\n", " '4':'T4:The tumor invades structures such as the mediastinum, major blood vessels, and chest wall.'\n", " }\n", " t_stage=t_stage_mapping.get(str(row['17T staging']),'Warning')\n", "\n", " n_stage_mapping = {\n", " '0':'N0:No lymph node metastasis.',\n", " '1':'N1:A small number of lymph node metastases, possibly located around the tumor.',\n", " '2':'N2:An increase in the number of lymph node metastases, possibly involving the central lymph nodes.',\n", " '3':'N3:Lymph node metastasis or fusion of lymph nodes into masses, possibly reaching the contralateral lymph nodes or distant lymph node metastasis.'\n", " \n", " }\n", " n_stage=n_stage_mapping.get(str(row['17N staging']),'Warning')\n", "\n", " all_stage_mapping={\n", " '1':'Stage1:The primary tumor is confined to the nasopharynx, with no lymph node metastasis or distant metastasis',\n", " '2':'Stage2:The primary tumor is confined to the nasopharynx but may have extended into surrounding tissues or there is unilateral lymph node metastasis (≤6 cm), with no distant metastasis.',\n", " '3':'Stage3:The primary tumor invades adjacent structures, or there is larger lymph node metastasis (>6 cm but ≤9 cm). The tumor may extend to regional lymph nodes but has not yet metastasized to distant organs.',\n", " '4':'Stage4:The primary tumor has spread extensively or there are widespread lymph node metastases, or distant metastasis has occurred. In this stage, the tumor may have invaded the skull base, brain, major blood vessels, or other vital structures, or it may have already spread to distant organs.'\n", " }\n", " all_stage=all_stage_mapping.get(str(row['17 total staging']),'Warning')\n", "\n", " concurrent_chemotherapy='Yes' if row['oncurrent chemotherapy']=='1' else 'No'\n", " in_addition_to_simple_targeting_at_the_same_time='Yes' if row['Concurrent chemotherapy']=='1' else 'No'\n", " supplementary_course = 'Yes' if row['Adjuvant Chemotherapy']=='1' else 'No'\n", " targeted_therapy = 'Yes' if row['Targeted Therapy']=='1' else 'No'\n", "\n", " def process_combined_cases(value):\n", " if isinstance(value, str):\n", " parts = value.split('+')\n", " # 确保每个部分都是数字，且每个部分唯一\n", " if len(parts) >= 2 and all(part.isdigit() for part in parts) and len(set(parts)) == len(parts):\n", " return int(random.choice(parts)) # 随机选择一个数值并返回\n", " return value # 如果不符合条件，直接返回原始值\n", "\n", " complication_mapping = {#组合处理+特殊字段处理\n", " '0':'0:Without any complications or symptoms.',\n", " '1':'1:Mild complications that may not require treatment or medical intervention. These complications usually do not affect daily activities.',\n", " '2':'2:Mild complications that require some medication or treatment to control, and may have a slight impact on daily activities.',\n", " '3':'3:Moderate complications, where the patient can manage daily activities but may be affected in certain tasks or require regular treatment.',\n", " '4':'4:Moderate complications that affect daily life, require medical intervention, and may lead to a decline in some aspects of self-care ability.',\n", " '5':'5:More severe complications that require the patient to be hospitalized or undergo more frequent medical interventions.',\n", " '6':'6:More severe complications, where the health of patient is significantly affected and they may be unable to perform normal daily activities. Hospitalization or more frequent medical interventions are required.',\n", " '7':'7:Severe complications, where the health of patient is significantly affected, with a potential life-threatening condition, requiring emergency medical intervention.',\n", " '8':'8:Extremely severe complications that may be life-threatening, with impaired function of multiple organ systems, requiring intensive care and emergency treatment.',\n", " '9':'9:Fatal complications, where the patient has not yet died but is in an extremely critical condition, urgently requiring medical intervention, with a low chance of survival.',\n", " '10':'10:Extremely severe complications, where the condition of patient may lead to death in a short period of time. The patient is in a terminal state, with little effect from medical intervention.',\n", " '11':'11:Critical condition, almost irreversible, with the vital signs patient extremely weakened.',\n", " '12':'12:Death or on the verge of death, the patient cannot be saved due to complications.',\n", " '3+巨细胞瘤术后':'3+巨细胞瘤术后:Post-surgical giant cell tumor with moderate complications, where the patient can manage daily activities but may be affected in certain tasks or require regular treatment. This may lead to a decline in immune function, treatment delays or interference, limitations in local function, and increased complexity in the treatment process, thus negatively impacting the prognosis of nasopharyngeal carcinoma.',\n", " '4+强直性脊柱炎':'4+强直性脊柱炎:Ankylosing spondylitis with moderate complications, affecting daily life, requiring medical intervention, and potentially leading to a decline in some aspects of self-care ability. At the same time, it may indirectly impact the treatment effectiveness and prognosis of nasopharyngeal carcinoma through factors such as immune system effects, drug interactions, comorbidity challenges, pain, and activity limitations.',\n", " '红斑狼疮：':'红斑狼疮:Systemic Lupus Erythematosus (SLE) is an autoimmune disease where the immune system attacks normal tissues, leading to multi-organ damage. For nasopharyngeal carcinoma patients, SLE can affect cancer treatment outcomes and prognosis through immune system abnormalities, drug interactions, comorbidities, chronic inflammation and fatigue, and increased risk of complications. SLE patients have impaired immune function, poorer treatment tolerance, and are more prone to complications during treatment, which may reduce the effectiveness of nasopharyngeal cancer therapy and hinder recovery.',\n", " '溃疡性结肠炎':'溃疡性结肠炎:Ulcerative colitis (UC) is a chronic intestinal inflammation treated with immunosuppressive drugs. For nasopharyngeal carcinoma patients, UC can impact cancer treatment outcomes and prognosis by suppressing the immune system, drug interactions, malnutrition, and chronic inflammation, increasing risks and complications during treatment.',\n", " '慢性荨麻疹':'慢性荨麻疹:Chronic urticaria (CU) is a skin condition caused by immune system abnormalities. For nasopharyngeal carcinoma patients, CU can impact cancer treatment outcomes through immune dysregulation, drug interactions, and increased risk of complications. In particular, the use of immunosuppressive drugs may weaken treatment effectiveness and increase the risk of side effects and infections.',\n", " '脑膜瘤术后':'脑膜瘤术后:Post-meningioma surgery patients often experience immune system suppression, drug interactions, and physical weakness, which can affect the treatment outcomes of nasopharyngeal carcinoma. During the recovery period, the suppressed immune system may reduce the response to radiotherapy and chemotherapy, while increasing the risk of infections and other complications, ultimately affecting treatment tolerance and prognosis.',\n", " '皮肌炎':'皮肌炎:Dermatomyositis is an autoimmune disease that may increase the risk of nasopharyngeal cancer and affect immune function and muscle health. For nasopharyngeal cancer patients, dermatomyositis can reduce treatment effectiveness, increase side effects, and lead to a poorer prognosis.',\n", " '双眼视网膜病变':'双眼视网膜病变:Bilateral retinopathy is a disease affecting the retinal vasculature and nerves, which in nasopharyngeal cancer patients may result from paraneoplastic immune response or radiation-induced damage. It may indicate distant metastasis or systemic vascular abnormalities, affecting prognosis and reducing treatment adherence and quality of life due to vision impairment.'\n", " }\n", " \n", " Complication = process_combined_cases(str(row['Comorbidity']))\n", " complication = complication_mapping.get(Complication)\n", "\n", " scheme_2_mapping={ #组合处理？\n", " '1':'TPF',\n", " '2':'PF',\n", " '3':'TF',\n", " '4':'GP',\n", " '5':'AP'\n", " #TPF:多柔比星（Docetaxel）+顺铂（Cisplatin）+氟尿嘧啶（5-Fluorouracil）\n", " #PF:顺铂（Cisplatin）+氟尿嘧啶（5-Fluorouracil，简称 5-FU）\n", " #TF:紫杉醇（Taxol 或 Paclitaxel）+氟尿嘧啶（5-Fluorouracil，简称 5-FU），\n", " #GP:吉西他滨（Gemcitabine）+顺铂（Cisplatin）\n", " #AP:多柔比星（Adriamycin，也叫 Doxorubicin）+环磷酰胺（Cyclophosphamide）\n", " }\n", " Scheme_2 = process_combined_cases(str(row['Scheme_2']))\n", " scheme_2 = scheme_2_mapping.get(Scheme_2)\n", "\n", " chemotherapeutics_mapping = { #组合处理？\n", " '0':'None',\n", " '1':'Cisplatin',\n", " '2':'Nedaplatin',\n", " '3':'Carboplatin',\n", " '4':'Oxaliplatin',\n", " '5':' Lobaplatin',\n", " '6':'Docetaxel',\n", " '7':'5-fu',\n", " '8':'Sunitinib/ Nivolumab',\n", " '9':'PF',\n", " '10':'TP',\n", " '11':'others'\n", " }\n", " Chemotherapeutics=process_combined_cases(str(row['Chemotherapy Drugs'])) \n", " chemotherapeutics = chemotherapeutics_mapping.get(Chemotherapeutics)\n", "\n", " metastatic_site_mapping={\n", " '0':'None',\n", " '1':'Bone',\n", " '2':'Lung',\n", " '3':'Liver',\n", " '4':'Multiple',\n", " '5':'Others'\n", " }\n", " metastatic_site=metastatic_site_mapping.get(str(row['Metastatic Site']),'Warning')\n", "\n", " labels_state_mapping ={\n", " '1':'dead',\n", " '0':'alive',\n", " }\n", "\n", " OS_state = labels_state_mapping.get(str(row['OS']),'Warning')\n", " DMFS_state = labels_state_mapping.get(str(row['DMFS']),'Warning')\n", " LRFS_state = labels_state_mapping.get(str(row['LRFS']),'Warning')\n", " RRFS_state = labels_state_mapping.get(str(row['RRFS']),'Warning')\n", " LRRFS_state = labels_state_mapping.get(str(row['LRRFS']),'Warning')\n", " DFS_state = labels_state_mapping.get(str(row['DFS']),'Warning')\n", "\n", "\n", " json_data_1= {\n", " \n", " \n", " \"conversations\":\n", " [\n", " {\n", "\n", " \"from\": \"human\",\n", " \"value\":f\"\"\n", " f\"The Sex is {sex};\\n\"\n", " f\"The WHO_type is {who_type};\\n\"\n", " f\"The Age is {row['Age']};\\n\"\n", " f\"The Smoke is {smoke};\"\n", " f\"The Drinke is {drink};\"\n", " f\"The family history of cancer is {family_history_of_cancer};\\n \"\n", " f\"The T_stage is {t_stage}; \\n\"\n", " f\"The N_stage is {n_stage}; \\n\"\n", " f\"The All_stage is {all_stage}; \\n\"\n", " f\"The EBV of before treatment is {round(row['Pre-treatment DNA'],4)};\\n\" #保留四位小数\n", " f\"The EBV of after treatment is {round(row['Post-induction chemotherapy EBV DNA'],4)}; \\n\"\n", " f\"The HGB is {round(row['HGB'],4)};\\n\"\n", " f\"The ALB is {round(row['ALB'],4)};\\n \"\n", " f\"The CRP is {round(row['CRP'],4)};\\n \"\n", " f\"The LDH is {round(row['LDH'],4)}; \\n\"\n", " f\"The Number of course is {row['Number of treatment cycles']};\\n \"\n", " f\"The Concurrent chemotherapy is {concurrent_chemotherapy};\\n \"\n", " f\"The In addition to simple targeting at the same time is {in_addition_to_simple_targeting_at_the_same_time}; \\n\"\n", " #f\"The scheme is {row['方案']};\\n \" #对预后任务的影响不明显\n", " f\"The Number of course_A is {row['Number of Treatment Courses_A']}; \\n\" #涉及处理组合数据\n", " f\"The Cumulative crisplatin dose is {row['Cumulative Cisplatin Dose']}; \\n\"\n", " f\"The Supplementary course is {supplementary_course}; \\n\"\n", " f\"The Targeted therapy is {targeted_therapy}; \\n\"\n", " f\"The Complication is {complication}; \\n\"\n", " f\"The Scheme_2 is {scheme_2}; \\n\"\n", " f\"The Chemotherapeutics is {chemotherapeutics};\\n \"\n", " f\"The Metastatic site is {metastatic_site};\\n\"\n", " f\"What is the patient's Overall Survival state and Overall Survival time?\\n\"\n", " \n", " \n", " },\n", " \n", " {\n", " \"from\": \"gpt\",\n", " \"value\":f\"The Overall Survival state is ### {OS_state} ### and Overall Survival time is ### {round(row['OS time new'],4)} ###\"\n", " \n", " }\n", " ]\n", " ,\n", " \"images\": \n", " [\n", " image_path_relative \n", " ]\n", "\n", " \n", "\n", " \n", " }\n", "\n", "\n", "\n", " \n", " #将所有病人的json数据添加到列表中\n", " all_patient_data_1.append(json_data_1)\n", " \n", " # 更新计数器\n", " json_file_count += 1\n", "\n", " # all_patient_data= all_patient_data_1+all_patient_data_2+all_patient_data_3+all_patient_data_4+all_patient_data_5+all_patient_data_6\n", " all_patient_data= all_patient_data_1\n", "\n", "\n", "#将所有病人的json数据保存到一个文件中\n", "output_file= os .path.join(output_dir,'test_OS_0319.json')\n", "with open(output_file,'w',encoding='utf-8')as json_file:\n", " json.dump(all_patient_data,json_file,ensure_ascii=False,indent=4)\n", "\n", "print(f\"The data of all patients have been successfully saved to {output_file}\")\n", "# 最后输出生成的 JSON 文件数量\n", "print(f\"All : {json_file_count}\")\n" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] } ], "metadata": { "kernelspec": { "display_name": "llava", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.10.15" } }, "nbformat": 4, "nbformat_minor": 2 }