Hugging Face's logo

Datasets:
Yoshigold
/
plant-msyn-data

Tasks:
Other
Modalities:
Text
Size:
1B<n<10B
Tags:
biology
genomics
synteny
plants
License:
Dataset card Data Studio Files
xet
Community
Yoshigold commited on
Commit
aada018
·
verified ·
1 Parent(s): c6533be

Add files using upload-large-folder tool

Browse files
Files changed (14) hide show
  1. .gitattributes +1 -0
  2. mcscan_results/bed_files/actinidia_chinensis.bed +0 -0
  3. mcscan_results/bed_files/avena_longiglumis.bed +0 -0
  4. mcscan_results/bed_files/database_genomes.txt +7 -10
  5. mcscan_results/bed_files/lets_test_again.bed +0 -0
  6. mcscan_results/bed_files/test_19_1.bed +0 -0
  7. mcscan_results/bed_files/test_20_1_againeee.bed +0 -0
  8. mcscan_results/bed_files/test_22_1_mcscan_change_TsL6!.bed +0 -0
  9. mcscan_results/bed_files/vigna_radiata.bed +0 -0
  10. mcscan_results/bed_files/vigna_unguiculata.bed +0 -0
  11. mcscan_results/i1_blocks/aegilops_tauschii.manihot_esculenta.i1.blocks +0 -0
  12. mcscan_results/i1_blocks/manihot_esculenta.oryza_barthii.i1.blocks +0 -0
  13. mcscan_results/i1_blocks/oryza_barthii.solanum_tuberosum.i1.blocks +0 -0
  14. sql/search_catalogs/miscanthus_sinensis.catalog.sqlite +3 -0
.gitattributes CHANGED
@@ -88,3 +88,4 @@ mcscan_results/pep_files/triticum_timopheevii.pep filter=lfs diff=lfs merge=lfs
88
  mcscan_results/pep_files/triticum_urartu.pep filter=lfs diff=lfs merge=lfs -text
89
  mcscan_results/pep_files/vigna_unguiculata.pep filter=lfs diff=lfs merge=lfs -text
90
  mcscan_results/pep_files/vitis_vinifera.pep filter=lfs diff=lfs merge=lfs -text
 
 
88
  mcscan_results/pep_files/triticum_urartu.pep filter=lfs diff=lfs merge=lfs -text
89
  mcscan_results/pep_files/vigna_unguiculata.pep filter=lfs diff=lfs merge=lfs -text
90
  mcscan_results/pep_files/vitis_vinifera.pep filter=lfs diff=lfs merge=lfs -text
91
+ sql/search_catalogs/miscanthus_sinensis.catalog.sqlite filter=lfs diff=lfs merge=lfs -text
mcscan_results/bed_files/actinidia_chinensis.bed CHANGED
The diff for this file is too large to render. See raw diff
 
mcscan_results/bed_files/avena_longiglumis.bed ADDED
The diff for this file is too large to render. See raw diff
 
mcscan_results/bed_files/database_genomes.txt CHANGED
@@ -1,13 +1,10 @@
1
- # Database Genomes Whitelist
2
- # Only genomes listed here will appear in the public genome dropdown
3
- # One genome name per line (without .bed extension)
4
- # Lines starting with # are comments
5
- #
6
- # To add a new database genome:
7
- # 1. Add the .bed and .pep files to bed_files/ and pep_files/
8
- # 2. Add the genome name to this file
9
- # 3. Restart the webapp
10
- #
11
  actinidia_chinensis
12
  aegilops_tauschii
13
  arabidopsis_thaliana
 
1
+ # Official database genomes for Plant-mSyn
2
+ # These genomes appear in the public query genome dropdown.
3
+ # Custom user uploads are excluded to prevent clutter.
4
+ # To add a new database genome, add its name here AND ensure:
5
+ # 1. A .bed file exists in this folder
6
+ # 2. The genome is defined in Scripts/genome_config.py
7
+
 
 
 
8
  actinidia_chinensis
9
  aegilops_tauschii
10
  arabidopsis_thaliana
mcscan_results/bed_files/lets_test_again.bed ADDED
The diff for this file is too large to render. See raw diff
 
mcscan_results/bed_files/test_19_1.bed ADDED
The diff for this file is too large to render. See raw diff
 
mcscan_results/bed_files/test_20_1_againeee.bed ADDED
The diff for this file is too large to render. See raw diff
 
mcscan_results/bed_files/test_22_1_mcscan_change_TsL6!.bed ADDED
The diff for this file is too large to render. See raw diff
 
mcscan_results/bed_files/vigna_radiata.bed CHANGED
The diff for this file is too large to render. See raw diff
 
mcscan_results/bed_files/vigna_unguiculata.bed CHANGED
The diff for this file is too large to render. See raw diff
 
mcscan_results/i1_blocks/aegilops_tauschii.manihot_esculenta.i1.blocks CHANGED
The diff for this file is too large to render. See raw diff
 
mcscan_results/i1_blocks/manihot_esculenta.oryza_barthii.i1.blocks CHANGED
The diff for this file is too large to render. See raw diff
 
mcscan_results/i1_blocks/oryza_barthii.solanum_tuberosum.i1.blocks CHANGED
The diff for this file is too large to render. See raw diff
 
sql/search_catalogs/miscanthus_sinensis.catalog.sqlite ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:883a667a604e47a35a6f3e36f3b15214d1853e5cc5da614f2fbf8b678ad8b4b2
3
+ size 71311360