# -*- coding: utf-8 -*- # file: config.py # time: 23:04 26/04/2024 # author: YANG, HENG (杨恒) # github: https://github.com/yangheng95 # huggingface: https://huggingface.co/yangheng # google scholar: https://scholar.google.com/citations?user=NPq5a_0AAAAJ&hl=en # Copyright (C) 2019-2024. All Rights Reserved. import os from omnigenbench import ( ClassificationMetric, AutoConfig, OmniModelForSequenceClassification, OmniDatasetForSequenceClassification, ) # Hyperparameters config_dict = { "task_name": "DEEPSEA", "task_type": "seq_classification", "num_labels": 919, "epochs": 50, "patience": 5, "learning_rate": 2e-5, "weight_decay": 0, "batch_size": 4, "max_length": 1024, # "max_length": 1024 for some models "seeds": [42], "use_str": True, "use_kmer": True, "compute_metrics": [ClassificationMetric(ignore_y=-100, average="macro").f1_score, ClassificationMetric(ignore_y=-100).matthews_corrcoef], "train_file": f"{os.path.dirname(__file__)}/train.json", "test_file": f"{os.path.dirname(__file__)}/test.json", "valid_file": f"{os.path.dirname(__file__)}/valid.json" if os.path.exists(f"{os.path.dirname(__file__)}/valid.json") else None, # "dataset_cls": Dataset, # For your custom dataset preparation "dataset_cls": OmniDatasetForSequenceClassification, "model_cls": OmniModelForSequenceClassification, } bench_config = AutoConfig(config_dict)