Upload dataset (part 00002-of-00003)
Browse files- README.md +140 -0
- data/train-00100-of-00113.parquet +3 -0
- data/train-00101-of-00113.parquet +3 -0
- data/train-00102-of-00113.parquet +3 -0
- data/train-00103-of-00113.parquet +3 -0
- data/train-00104-of-00113.parquet +3 -0
- data/train-00105-of-00113.parquet +3 -0
- data/train-00106-of-00113.parquet +3 -0
- data/train-00107-of-00113.parquet +3 -0
- data/train-00108-of-00113.parquet +3 -0
- data/train-00109-of-00113.parquet +3 -0
- data/train-00110-of-00113.parquet +3 -0
- data/train-00111-of-00113.parquet +3 -0
- data/train-00112-of-00113.parquet +3 -0
README.md
ADDED
|
@@ -0,0 +1,140 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
dataset_info:
|
| 3 |
+
features:
|
| 4 |
+
- name: cell_id
|
| 5 |
+
dtype: string
|
| 6 |
+
- name: embedding
|
| 7 |
+
sequence: float64
|
| 8 |
+
- name: disease
|
| 9 |
+
dtype:
|
| 10 |
+
class_label:
|
| 11 |
+
names:
|
| 12 |
+
'0': AT0
|
| 13 |
+
'1': AT1
|
| 14 |
+
'2': AT2
|
| 15 |
+
'3': AT2 proliferating
|
| 16 |
+
'4': Adventitial fibroblasts
|
| 17 |
+
'5': Alveolar Mph CCL3+
|
| 18 |
+
'6': Alveolar Mph MT-positive
|
| 19 |
+
'7': Alveolar Mph proliferating
|
| 20 |
+
'8': Alveolar fibroblasts
|
| 21 |
+
'9': Alveolar macrophages
|
| 22 |
+
'10': B cells
|
| 23 |
+
'11': Basal resting
|
| 24 |
+
'12': CD4 T cells
|
| 25 |
+
'13': CD8 T cells
|
| 26 |
+
'14': Classical monocytes
|
| 27 |
+
'15': Club (nasal)
|
| 28 |
+
'16': Club (non-nasal)
|
| 29 |
+
'17': DC1
|
| 30 |
+
'18': DC2
|
| 31 |
+
'19': Deuterosomal
|
| 32 |
+
'20': EC aerocyte capillary
|
| 33 |
+
'21': EC arterial
|
| 34 |
+
'22': EC general capillary
|
| 35 |
+
'23': EC venous pulmonary
|
| 36 |
+
'24': EC venous systemic
|
| 37 |
+
'25': Goblet (bronchial)
|
| 38 |
+
'26': Goblet (nasal)
|
| 39 |
+
'27': Goblet (subsegmental)
|
| 40 |
+
'28': Hematopoietic stem cells
|
| 41 |
+
'29': Hillock-like
|
| 42 |
+
'30': Interstitial Mph perivascular
|
| 43 |
+
'31': Ionocyte
|
| 44 |
+
'32': Lymphatic EC differentiating
|
| 45 |
+
'33': Lymphatic EC mature
|
| 46 |
+
'34': Lymphatic EC proliferating
|
| 47 |
+
'35': Mast cells
|
| 48 |
+
'36': Mesothelium
|
| 49 |
+
'37': Migratory DCs
|
| 50 |
+
'38': Monocyte-derived Mph
|
| 51 |
+
'39': Multiciliated (nasal)
|
| 52 |
+
'40': Multiciliated (non-nasal)
|
| 53 |
+
'41': Myofibroblasts
|
| 54 |
+
'42': NK cells
|
| 55 |
+
'43': Neuroendocrine
|
| 56 |
+
'44': Non-classical monocytes
|
| 57 |
+
'45': Peribronchial fibroblasts
|
| 58 |
+
'46': Pericytes
|
| 59 |
+
'47': Plasma cells
|
| 60 |
+
'48': Plasmacytoid DCs
|
| 61 |
+
'49': SM activated stress response
|
| 62 |
+
'50': SMG duct
|
| 63 |
+
'51': SMG mucous
|
| 64 |
+
'52': SMG serous (bronchial)
|
| 65 |
+
'53': SMG serous (nasal)
|
| 66 |
+
'54': Smooth muscle
|
| 67 |
+
'55': Smooth muscle FAM83D+
|
| 68 |
+
'56': Subpleural fibroblasts
|
| 69 |
+
'57': Suprabasal
|
| 70 |
+
'58': T cells proliferating
|
| 71 |
+
'59': Tuft
|
| 72 |
+
'60': Unknown
|
| 73 |
+
'61': pre-TB secretory
|
| 74 |
+
- name: cell_type
|
| 75 |
+
dtype:
|
| 76 |
+
class_label:
|
| 77 |
+
names:
|
| 78 |
+
'0': B cell
|
| 79 |
+
'1': CD1c-positive myeloid dendritic cell
|
| 80 |
+
'2': CD4-positive, alpha-beta T cell
|
| 81 |
+
'3': CD8-positive, alpha-beta T cell
|
| 82 |
+
'4': T cell
|
| 83 |
+
'5': acinar cell
|
| 84 |
+
'6': alveolar adventitial fibroblast
|
| 85 |
+
'7': alveolar macrophage
|
| 86 |
+
'8': alveolar type 1 fibroblast cell
|
| 87 |
+
'9': bronchial goblet cell
|
| 88 |
+
'10': bronchus fibroblast of lung
|
| 89 |
+
'11': brush cell of tracheobronchial tree
|
| 90 |
+
'12': capillary endothelial cell
|
| 91 |
+
'13': classical monocyte
|
| 92 |
+
'14': club cell
|
| 93 |
+
'15': conventional dendritic cell
|
| 94 |
+
'16': dendritic cell
|
| 95 |
+
'17': elicited macrophage
|
| 96 |
+
'18': endothelial cell of lymphatic vessel
|
| 97 |
+
'19': epithelial cell of lower respiratory tract
|
| 98 |
+
'20': fibroblast
|
| 99 |
+
'21': hematopoietic stem cell
|
| 100 |
+
'22': ionocyte
|
| 101 |
+
'23': lung macrophage
|
| 102 |
+
'24': lung pericyte
|
| 103 |
+
'25': mast cell
|
| 104 |
+
'26': mesothelial cell
|
| 105 |
+
'27': mucus secreting cell
|
| 106 |
+
'28': multiciliated columnar cell of tracheobronchial tree
|
| 107 |
+
'29': multiciliated epithelial cell
|
| 108 |
+
'30': myofibroblast cell
|
| 109 |
+
'31': nasal mucosa goblet cell
|
| 110 |
+
'32': natural killer cell
|
| 111 |
+
'33': non-classical monocyte
|
| 112 |
+
'34': plasma cell
|
| 113 |
+
'35': plasmacytoid dendritic cell
|
| 114 |
+
'36': pulmonary alveolar epithelial cell
|
| 115 |
+
'37': pulmonary alveolar type 1 cell
|
| 116 |
+
'38': pulmonary alveolar type 2 cell
|
| 117 |
+
'39': pulmonary artery endothelial cell
|
| 118 |
+
'40': pulmonary neuroendocrine cell
|
| 119 |
+
'41': respiratory basal cell
|
| 120 |
+
'42': respiratory tract hillock cell
|
| 121 |
+
'43': serous secreting cell
|
| 122 |
+
'44': smooth muscle cell
|
| 123 |
+
'45': stromal cell
|
| 124 |
+
'46': tracheobronchial goblet cell
|
| 125 |
+
'47': tracheobronchial serous cell
|
| 126 |
+
'48': tracheobronchial smooth muscle cell
|
| 127 |
+
'49': unknown
|
| 128 |
+
'50': vein endothelial cell
|
| 129 |
+
splits:
|
| 130 |
+
- name: train
|
| 131 |
+
num_bytes: 56222160700
|
| 132 |
+
num_examples: 2282447
|
| 133 |
+
download_size: 42386334598
|
| 134 |
+
dataset_size: 56222160700
|
| 135 |
+
configs:
|
| 136 |
+
- config_name: default
|
| 137 |
+
data_files:
|
| 138 |
+
- split: train
|
| 139 |
+
path: data/train-*
|
| 140 |
+
---
|
data/train-00100-of-00113.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:c3fba0d1c7ed056c0c41edc721b621731df94845005dcd2d9c5337e545d8afd4
|
| 3 |
+
size 374369490
|
data/train-00101-of-00113.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:19fd2b25107b9dc4efca2e5a224bd5c338b30591676d98de91547d2c5deee345
|
| 3 |
+
size 375484141
|
data/train-00102-of-00113.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:866c505c966cc163f03c9ef740884fc4a1d9bf93cdde999e548342d8da19b270
|
| 3 |
+
size 375152008
|
data/train-00103-of-00113.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:f89baab5f3429dc9e5f159969a1b7ff3fbde5d5011c06635e745e302248023a1
|
| 3 |
+
size 374920581
|
data/train-00104-of-00113.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:f9cee7b27b30075368aea4f67b1d9ccb2b652cdd03078cc86cd0b9861b90eaee
|
| 3 |
+
size 374711723
|
data/train-00105-of-00113.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:d9daf7a82fd0ceb0aefaf5ad56055c481f872720405a135c32bbaa0e9234f61e
|
| 3 |
+
size 375069910
|
data/train-00106-of-00113.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:e1669bb42786ee000dd4484dbc55cdbce4ffe522512e404fe61c7938edece3ed
|
| 3 |
+
size 375753547
|
data/train-00107-of-00113.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:c5291145233ed7cdf54323efdcbfbf0ed338c4114bea7472d85ac402c872a0c4
|
| 3 |
+
size 375302182
|
data/train-00108-of-00113.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:9f4ee36be7a51c165a573a60a86b0b2dbf7fd83c926842d3d60ce619fc9ff4bf
|
| 3 |
+
size 375254435
|
data/train-00109-of-00113.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:8ff3a74b6b18e179db8e7dd6db3325edf0007af4e72a523619143123c59cdbdf
|
| 3 |
+
size 374975288
|
data/train-00110-of-00113.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:64699b515283b2cdecc09e04a5630b84bb59ea2ea05ca84f4d3fb65de92320ac
|
| 3 |
+
size 375193223
|
data/train-00111-of-00113.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:63dab788bd76b6ccf9f0c85a70b8648403da415be19934184057b675a848487e
|
| 3 |
+
size 374976253
|
data/train-00112-of-00113.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:223abc2a3500b3fa9bc13a78a7a6e67c2b886dced5a601179afe220585f7523b
|
| 3 |
+
size 375552020
|