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from unittest import TestCase |
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from ipykernel.tests import utils |
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from nbformat.converter import convert |
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from nbformat.reader import reads |
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import re |
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import json |
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from copy import copy |
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import unittest |
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try: |
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from queue import Empty |
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def isstr(s): |
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return isinstance(s, str) |
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except ImportError: |
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from Queue import Empty |
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def isstr(s): |
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return isinstance(s, basestring) |
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class NotebookTest(TestCase): |
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"""Validate a notebook. All code cells are executed in order. The output is either checked |
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for errors (if no reference output is present), or is compared against expected output. |
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Useful references: |
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http://nbformat.readthedocs.org/en/latest/format_description.html |
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http://jupyter-client.readthedocs.org/en/latest/messaging.html |
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""" |
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IGNORE_TYPES = ["execute_request", "execute_input", "status", "pyin"] |
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STRIP_KEYS = ["execution_count", "traceback", "prompt_number", "source"] |
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NBFORMAT_VERSION = 4 |
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def _test_notebook(self, notebook, test): |
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with open(notebook) as f: |
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nb = convert(reads(f.read()), self.NBFORMAT_VERSION) |
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_, kernel = utils.start_new_kernel() |
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for i, c in enumerate([c for c in nb.cells if c.cell_type == 'code']): |
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self._test_notebook_cell(self.sanitize_cell(c), i, kernel, test) |
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def _test_notebook_cell(self, cell, i, kernel, test): |
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if hasattr(cell, 'source'): |
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code = cell.source |
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else: |
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code = cell.input |
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iopub = kernel.iopub_channel |
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kernel.execute(code) |
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outputs = [] |
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msg = None |
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no_error = True |
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first_error = -1 |
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error_msg = '' |
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while self.should_continue(msg): |
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try: |
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msg = iopub.get_msg(block=True, timeout=1) |
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except Empty: |
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continue |
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if msg['msg_type'] not in self.IGNORE_TYPES: |
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if msg['msg_type'] == 'error': |
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error_msg = ' ' + msg['content']['ename'] + '\n ' + msg['content']['evalue'] |
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no_error = False |
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if first_error == -1: |
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first_error = i |
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i = len(outputs) |
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expected = i < len(cell.outputs) and cell.outputs[i] or [] |
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o = self.transform_message(msg, expected) |
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outputs.append(o) |
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if (test == 'check_error'): |
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self.assertTrue(no_error, 'Executing cell %d resulted in an error:\n%s'%(first_error, error_msg)) |
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else: |
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scrub = lambda x: self.dump_canonical(list(self.scrub_outputs(x))) |
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scrubbed = scrub(outputs) |
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expected = scrub(cell.outputs) |
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def dump_canonical(self, obj): |
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return json.dumps(obj, indent=2, sort_keys=True) |
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def scrub_outputs(self, outputs): |
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""" |
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remove all scrubs from output data and text |
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""" |
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for output in outputs: |
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out = copy(output) |
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for scrub, sub in []: |
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def _scrubLines(lines): |
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if isstr(lines): |
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return re.sub(scrub, sub, lines) |
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else: |
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return [re.sub(scrub, sub, line) for line in lines] |
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if "text" in out: |
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out["text"] = _scrubLines(out["text"]) |
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if "data" in out: |
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if isinstance(out["data"], dict): |
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for mime, data in out["data"].items(): |
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out["data"][mime] = _scrubLines(data) |
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else: |
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out["data"] = _scrubLines(out["data"]) |
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yield out |
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def strip_keys(self, d): |
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""" |
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remove keys from STRIP_KEYS to ensure comparability |
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""" |
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for key in self.STRIP_KEYS: |
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d.pop(key, None) |
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return d |
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def sanitize_cell(self, cell): |
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""" |
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remove non-reproducible things |
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""" |
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for output in cell.outputs: |
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self.strip_keys(output) |
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return cell |
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def transform_message(self, msg, expected): |
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""" |
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transform a message into something like the notebook |
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""" |
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SWAP_KEYS = { |
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"output_type": { |
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"pyout": "execute_result", |
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"pyerr": "error" |
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} |
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} |
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output = { |
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u"output_type": msg["msg_type"] |
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} |
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output.update(msg["content"]) |
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output = self.strip_keys(output) |
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for key, swaps in SWAP_KEYS.items(): |
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if key in output and output[key] in swaps: |
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output[key] = swaps[output[key]] |
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if "data" in output and "data" not in expected: |
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output["text"] = output["data"] |
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del output["data"] |
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return output |
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def should_continue(self, msg): |
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""" |
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determine whether the current message is the last for this cell |
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""" |
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if msg is None: |
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return True |
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return not (msg["msg_type"] == "status" and |
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msg["content"]["execution_state"] == "idle") |
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