| | """ |
| | Testing |
| | ======= |
| | |
| | General guidelines for writing good tests: |
| | |
| | - doctests always assume ``import networkx as nx`` so don't add that |
| | - prefer pytest fixtures over classes with setup methods. |
| | - use the ``@pytest.mark.parametrize`` decorator |
| | - use ``pytest.importorskip`` for numpy, scipy, pandas, and matplotlib b/c of PyPy. |
| | and add the module to the relevant entries below. |
| | |
| | """ |
| |
|
| | import os |
| | import sys |
| | import warnings |
| | from importlib.metadata import entry_points |
| |
|
| | import pytest |
| |
|
| | import networkx |
| |
|
| |
|
| | def pytest_addoption(parser): |
| | parser.addoption( |
| | "--runslow", action="store_true", default=False, help="run slow tests" |
| | ) |
| | parser.addoption( |
| | "--backend", |
| | action="store", |
| | default=None, |
| | help="Run tests with a backend by auto-converting nx graphs to backend graphs", |
| | ) |
| | parser.addoption( |
| | "--fallback-to-nx", |
| | action="store_true", |
| | default=False, |
| | help="Run nx function if a backend doesn't implement a dispatchable function" |
| | " (use with --backend)", |
| | ) |
| |
|
| |
|
| | def pytest_configure(config): |
| | config.addinivalue_line("markers", "slow: mark test as slow to run") |
| | backend = config.getoption("--backend") |
| | if backend is None: |
| | backend = os.environ.get("NETWORKX_TEST_BACKEND") |
| | |
| | loopback_ep = entry_points(name="nx_loopback", group="networkx.backends") |
| | if not loopback_ep: |
| | warnings.warn( |
| | "\n\n WARNING: Mixed NetworkX configuration! \n\n" |
| | " This environment has mixed configuration for networkx.\n" |
| | " The test object nx_loopback is not configured correctly.\n" |
| | " You should not be seeing this message.\n" |
| | " Try `pip install -e .`, or change your PYTHONPATH\n" |
| | " Make sure python finds the networkx repo you are testing\n\n" |
| | ) |
| | config.backend = backend |
| | if backend: |
| | |
| | |
| | networkx.utils.backends.backends["nx_loopback"] = loopback_ep["nx_loopback"] |
| | networkx.utils.backends.backend_info["nx_loopback"] = {} |
| | networkx.config.backends = networkx.utils.Config( |
| | nx_loopback=networkx.utils.Config(), |
| | **networkx.config.backends, |
| | ) |
| | fallback_to_nx = config.getoption("--fallback-to-nx") |
| | if not fallback_to_nx: |
| | fallback_to_nx = os.environ.get("NETWORKX_FALLBACK_TO_NX") |
| | networkx.config.fallback_to_nx = bool(fallback_to_nx) |
| |
|
| |
|
| | def pytest_collection_modifyitems(config, items): |
| | |
| | |
| | if config.backend: |
| | |
| | |
| | backend_name = config.backend |
| | if backend_name != "networkx": |
| | networkx.utils.backends._dispatchable._is_testing = True |
| | networkx.config.backend_priority.algos = [backend_name] |
| | networkx.config.backend_priority.generators = [backend_name] |
| | backend = networkx.utils.backends.backends[backend_name].load() |
| | if hasattr(backend, "on_start_tests"): |
| | getattr(backend, "on_start_tests")(items) |
| |
|
| | if config.getoption("--runslow"): |
| | |
| | return |
| | skip_slow = pytest.mark.skip(reason="need --runslow option to run") |
| | for item in items: |
| | if "slow" in item.keywords: |
| | item.add_marker(skip_slow) |
| |
|
| |
|
| | |
| | @pytest.fixture(autouse=True) |
| | def set_warnings(): |
| | warnings.filterwarnings( |
| | "ignore", |
| | category=FutureWarning, |
| | message="\n\nsingle_target_shortest_path_length", |
| | ) |
| | warnings.filterwarnings( |
| | "ignore", |
| | category=FutureWarning, |
| | message="\n\nshortest_path", |
| | ) |
| | warnings.filterwarnings( |
| | "ignore", category=DeprecationWarning, message="\n\nThe `normalized`" |
| | ) |
| | warnings.filterwarnings( |
| | "ignore", category=DeprecationWarning, message="\n\nall_triplets" |
| | ) |
| | warnings.filterwarnings( |
| | "ignore", category=DeprecationWarning, message="\n\nrandom_triad" |
| | ) |
| | warnings.filterwarnings( |
| | "ignore", category=DeprecationWarning, message="minimal_d_separator" |
| | ) |
| | warnings.filterwarnings( |
| | "ignore", category=DeprecationWarning, message="d_separated" |
| | ) |
| | warnings.filterwarnings("ignore", category=DeprecationWarning, message="\n\nk_core") |
| | warnings.filterwarnings( |
| | "ignore", category=DeprecationWarning, message="\n\nk_shell" |
| | ) |
| | warnings.filterwarnings( |
| | "ignore", category=DeprecationWarning, message="\n\nk_crust" |
| | ) |
| | warnings.filterwarnings( |
| | "ignore", category=DeprecationWarning, message="\n\nk_corona" |
| | ) |
| | warnings.filterwarnings( |
| | "ignore", category=DeprecationWarning, message="\n\ntotal_spanning_tree_weight" |
| | ) |
| | warnings.filterwarnings( |
| | "ignore", category=DeprecationWarning, message=r"\n\nThe 'create=matrix'" |
| | ) |
| | warnings.filterwarnings( |
| | "ignore", category=DeprecationWarning, message="\n\n`compute_v_structures" |
| | ) |
| | warnings.filterwarnings( |
| | "ignore", category=DeprecationWarning, message="Keyword argument 'link'" |
| | ) |
| |
|
| |
|
| | @pytest.fixture(autouse=True) |
| | def add_nx(doctest_namespace): |
| | doctest_namespace["nx"] = networkx |
| |
|
| |
|
| | |
| |
|
| | try: |
| | import numpy |
| |
|
| | has_numpy = True |
| | except ImportError: |
| | has_numpy = False |
| |
|
| | try: |
| | import scipy |
| |
|
| | has_scipy = True |
| | except ImportError: |
| | has_scipy = False |
| |
|
| | try: |
| | import matplotlib |
| |
|
| | has_matplotlib = True |
| | except ImportError: |
| | has_matplotlib = False |
| |
|
| | try: |
| | import pandas |
| |
|
| | has_pandas = True |
| | except ImportError: |
| | has_pandas = False |
| |
|
| | try: |
| | import pygraphviz |
| |
|
| | has_pygraphviz = True |
| | except ImportError: |
| | has_pygraphviz = False |
| |
|
| | try: |
| | import pydot |
| |
|
| | has_pydot = True |
| | except ImportError: |
| | has_pydot = False |
| |
|
| | try: |
| | import sympy |
| |
|
| | has_sympy = True |
| | except ImportError: |
| | has_sympy = False |
| |
|
| |
|
| | |
| |
|
| | collect_ignore = [] |
| |
|
| | needs_numpy = [ |
| | "algorithms/approximation/traveling_salesman.py", |
| | "algorithms/centrality/current_flow_closeness.py", |
| | "algorithms/centrality/laplacian.py", |
| | "algorithms/node_classification.py", |
| | "algorithms/non_randomness.py", |
| | "algorithms/polynomials.py", |
| | "algorithms/shortest_paths/dense.py", |
| | "algorithms/tree/mst.py", |
| | "drawing/nx_latex.py", |
| | "generators/expanders.py", |
| | "linalg/bethehessianmatrix.py", |
| | "linalg/laplacianmatrix.py", |
| | "utils/misc.py", |
| | ] |
| | needs_scipy = [ |
| | "algorithms/approximation/traveling_salesman.py", |
| | "algorithms/assortativity/correlation.py", |
| | "algorithms/assortativity/mixing.py", |
| | "algorithms/assortativity/pairs.py", |
| | "algorithms/bipartite/matrix.py", |
| | "algorithms/bipartite/spectral.py", |
| | "algorithms/centrality/current_flow_betweenness.py", |
| | "algorithms/centrality/current_flow_betweenness_subset.py", |
| | "algorithms/centrality/eigenvector.py", |
| | "algorithms/centrality/katz.py", |
| | "algorithms/centrality/laplacian.py", |
| | "algorithms/centrality/second_order.py", |
| | "algorithms/centrality/subgraph_alg.py", |
| | "algorithms/communicability_alg.py", |
| | "algorithms/community/divisive.py", |
| | "algorithms/distance_measures.py", |
| | "algorithms/link_analysis/hits_alg.py", |
| | "algorithms/link_analysis/pagerank_alg.py", |
| | "algorithms/node_classification.py", |
| | "algorithms/similarity.py", |
| | "algorithms/tree/mst.py", |
| | "algorithms/walks.py", |
| | "convert_matrix.py", |
| | "drawing/layout.py", |
| | "drawing/nx_pylab.py", |
| | "generators/spectral_graph_forge.py", |
| | "generators/expanders.py", |
| | "linalg/algebraicconnectivity.py", |
| | "linalg/attrmatrix.py", |
| | "linalg/bethehessianmatrix.py", |
| | "linalg/graphmatrix.py", |
| | "linalg/laplacianmatrix.py", |
| | "linalg/modularitymatrix.py", |
| | "linalg/spectrum.py", |
| | "utils/rcm.py", |
| | ] |
| | needs_matplotlib = ["drawing/nx_pylab.py", "generators/classic.py"] |
| | needs_pandas = ["convert_matrix.py"] |
| | needs_pygraphviz = ["drawing/nx_agraph.py"] |
| | needs_pydot = ["drawing/nx_pydot.py"] |
| | needs_sympy = ["algorithms/polynomials.py"] |
| |
|
| | if not has_numpy: |
| | collect_ignore += needs_numpy |
| | if not has_scipy: |
| | collect_ignore += needs_scipy |
| | if not has_matplotlib: |
| | collect_ignore += needs_matplotlib |
| | if not has_pandas: |
| | collect_ignore += needs_pandas |
| | if not has_pygraphviz: |
| | collect_ignore += needs_pygraphviz |
| | if not has_pydot: |
| | collect_ignore += needs_pydot |
| | if not has_sympy: |
| | collect_ignore += needs_sympy |
| |
|