| | """Classes and functions for managing compressors.""" |
| |
|
| | import io |
| | import zlib |
| | from joblib.backports import LooseVersion |
| |
|
| | try: |
| | from threading import RLock |
| | except ImportError: |
| | from dummy_threading import RLock |
| |
|
| | try: |
| | import bz2 |
| | except ImportError: |
| | bz2 = None |
| |
|
| | try: |
| | import lz4 |
| | from lz4.frame import LZ4FrameFile |
| | except ImportError: |
| | lz4 = None |
| |
|
| | try: |
| | import lzma |
| | except ImportError: |
| | lzma = None |
| |
|
| |
|
| | LZ4_NOT_INSTALLED_ERROR = ('LZ4 is not installed. Install it with pip: ' |
| | 'https://python-lz4.readthedocs.io/') |
| |
|
| | |
| | _COMPRESSORS = {} |
| |
|
| | |
| | _ZFILE_PREFIX = b'ZF' |
| | _ZLIB_PREFIX = b'\x78' |
| | _GZIP_PREFIX = b'\x1f\x8b' |
| | _BZ2_PREFIX = b'BZ' |
| | _XZ_PREFIX = b'\xfd\x37\x7a\x58\x5a' |
| | _LZMA_PREFIX = b'\x5d\x00' |
| | _LZ4_PREFIX = b'\x04\x22\x4D\x18' |
| |
|
| |
|
| | def register_compressor(compressor_name, compressor, |
| | force=False): |
| | """Register a new compressor. |
| | |
| | Parameters |
| | ---------- |
| | compressor_name: str. |
| | The name of the compressor. |
| | compressor: CompressorWrapper |
| | An instance of a 'CompressorWrapper'. |
| | """ |
| | global _COMPRESSORS |
| | if not isinstance(compressor_name, str): |
| | raise ValueError("Compressor name should be a string, " |
| | "'{}' given.".format(compressor_name)) |
| |
|
| | if not isinstance(compressor, CompressorWrapper): |
| | raise ValueError("Compressor should implement the CompressorWrapper " |
| | "interface, '{}' given.".format(compressor)) |
| |
|
| | if (compressor.fileobj_factory is not None and |
| | (not hasattr(compressor.fileobj_factory, 'read') or |
| | not hasattr(compressor.fileobj_factory, 'write') or |
| | not hasattr(compressor.fileobj_factory, 'seek') or |
| | not hasattr(compressor.fileobj_factory, 'tell'))): |
| | raise ValueError("Compressor 'fileobj_factory' attribute should " |
| | "implement the file object interface, '{}' given." |
| | .format(compressor.fileobj_factory)) |
| |
|
| | if compressor_name in _COMPRESSORS and not force: |
| | raise ValueError("Compressor '{}' already registered." |
| | .format(compressor_name)) |
| |
|
| | _COMPRESSORS[compressor_name] = compressor |
| |
|
| |
|
| | class CompressorWrapper(): |
| | """A wrapper around a compressor file object. |
| | |
| | Attributes |
| | ---------- |
| | obj: a file-like object |
| | The object must implement the buffer interface and will be used |
| | internally to compress/decompress the data. |
| | prefix: bytestring |
| | A bytestring corresponding to the magic number that identifies the |
| | file format associated to the compressor. |
| | extension: str |
| | The file extension used to automatically select this compressor during |
| | a dump to a file. |
| | """ |
| |
|
| | def __init__(self, obj, prefix=b'', extension=''): |
| | self.fileobj_factory = obj |
| | self.prefix = prefix |
| | self.extension = extension |
| |
|
| | def compressor_file(self, fileobj, compresslevel=None): |
| | """Returns an instance of a compressor file object.""" |
| | if compresslevel is None: |
| | return self.fileobj_factory(fileobj, 'wb') |
| | else: |
| | return self.fileobj_factory(fileobj, 'wb', |
| | compresslevel=compresslevel) |
| |
|
| | def decompressor_file(self, fileobj): |
| | """Returns an instance of a decompressor file object.""" |
| | return self.fileobj_factory(fileobj, 'rb') |
| |
|
| |
|
| | class BZ2CompressorWrapper(CompressorWrapper): |
| |
|
| | prefix = _BZ2_PREFIX |
| | extension = '.bz2' |
| |
|
| | def __init__(self): |
| | if bz2 is not None: |
| | self.fileobj_factory = bz2.BZ2File |
| | else: |
| | self.fileobj_factory = None |
| |
|
| | def _check_versions(self): |
| | if bz2 is None: |
| | raise ValueError('bz2 module is not compiled on your python ' |
| | 'standard library.') |
| |
|
| | def compressor_file(self, fileobj, compresslevel=None): |
| | """Returns an instance of a compressor file object.""" |
| | self._check_versions() |
| | if compresslevel is None: |
| | return self.fileobj_factory(fileobj, 'wb') |
| | else: |
| | return self.fileobj_factory(fileobj, 'wb', |
| | compresslevel=compresslevel) |
| |
|
| | def decompressor_file(self, fileobj): |
| | """Returns an instance of a decompressor file object.""" |
| | self._check_versions() |
| | fileobj = self.fileobj_factory(fileobj, 'rb') |
| | return fileobj |
| |
|
| |
|
| | class LZMACompressorWrapper(CompressorWrapper): |
| |
|
| | prefix = _LZMA_PREFIX |
| | extension = '.lzma' |
| | _lzma_format_name = 'FORMAT_ALONE' |
| |
|
| | def __init__(self): |
| | if lzma is not None: |
| | self.fileobj_factory = lzma.LZMAFile |
| | self._lzma_format = getattr(lzma, self._lzma_format_name) |
| | else: |
| | self.fileobj_factory = None |
| |
|
| | def _check_versions(self): |
| | if lzma is None: |
| | raise ValueError('lzma module is not compiled on your python ' |
| | 'standard library.') |
| |
|
| | def compressor_file(self, fileobj, compresslevel=None): |
| | """Returns an instance of a compressor file object.""" |
| | if compresslevel is None: |
| | return self.fileobj_factory(fileobj, 'wb', |
| | format=self._lzma_format) |
| | else: |
| | return self.fileobj_factory(fileobj, 'wb', |
| | format=self._lzma_format, |
| | preset=compresslevel) |
| |
|
| | def decompressor_file(self, fileobj): |
| | """Returns an instance of a decompressor file object.""" |
| | return lzma.LZMAFile(fileobj, 'rb') |
| |
|
| |
|
| | class XZCompressorWrapper(LZMACompressorWrapper): |
| |
|
| | prefix = _XZ_PREFIX |
| | extension = '.xz' |
| | _lzma_format_name = 'FORMAT_XZ' |
| |
|
| |
|
| | class LZ4CompressorWrapper(CompressorWrapper): |
| |
|
| | prefix = _LZ4_PREFIX |
| | extension = '.lz4' |
| |
|
| | def __init__(self): |
| | if lz4 is not None: |
| | self.fileobj_factory = LZ4FrameFile |
| | else: |
| | self.fileobj_factory = None |
| |
|
| | def _check_versions(self): |
| | if lz4 is None: |
| | raise ValueError(LZ4_NOT_INSTALLED_ERROR) |
| | lz4_version = lz4.__version__ |
| | if lz4_version.startswith("v"): |
| | lz4_version = lz4_version[1:] |
| | if LooseVersion(lz4_version) < LooseVersion('0.19'): |
| | raise ValueError(LZ4_NOT_INSTALLED_ERROR) |
| |
|
| | def compressor_file(self, fileobj, compresslevel=None): |
| | """Returns an instance of a compressor file object.""" |
| | self._check_versions() |
| | if compresslevel is None: |
| | return self.fileobj_factory(fileobj, 'wb') |
| | else: |
| | return self.fileobj_factory(fileobj, 'wb', |
| | compression_level=compresslevel) |
| |
|
| | def decompressor_file(self, fileobj): |
| | """Returns an instance of a decompressor file object.""" |
| | self._check_versions() |
| | return self.fileobj_factory(fileobj, 'rb') |
| |
|
| |
|
| | |
| | |
| | _MODE_CLOSED = 0 |
| | _MODE_READ = 1 |
| | _MODE_READ_EOF = 2 |
| | _MODE_WRITE = 3 |
| | _BUFFER_SIZE = 8192 |
| |
|
| |
|
| | class BinaryZlibFile(io.BufferedIOBase): |
| | """A file object providing transparent zlib (de)compression. |
| | |
| | TODO python2_drop: is it still needed since we dropped Python 2 support A |
| | BinaryZlibFile can act as a wrapper for an existing file object, or refer |
| | directly to a named file on disk. |
| | |
| | Note that BinaryZlibFile provides only a *binary* file interface: data read |
| | is returned as bytes, and data to be written should be given as bytes. |
| | |
| | This object is an adaptation of the BZ2File object and is compatible with |
| | versions of python >= 2.7. |
| | |
| | If filename is a str or bytes object, it gives the name |
| | of the file to be opened. Otherwise, it should be a file object, |
| | which will be used to read or write the compressed data. |
| | |
| | mode can be 'rb' for reading (default) or 'wb' for (over)writing |
| | |
| | If mode is 'wb', compresslevel can be a number between 1 |
| | and 9 specifying the level of compression: 1 produces the least |
| | compression, and 9 produces the most compression. 3 is the default. |
| | """ |
| |
|
| | wbits = zlib.MAX_WBITS |
| |
|
| | def __init__(self, filename, mode="rb", compresslevel=3): |
| | |
| | |
| | self._lock = RLock() |
| | self._fp = None |
| | self._closefp = False |
| | self._mode = _MODE_CLOSED |
| | self._pos = 0 |
| | self._size = -1 |
| | self.compresslevel = compresslevel |
| |
|
| | if not isinstance(compresslevel, int) or not (1 <= compresslevel <= 9): |
| | raise ValueError("'compresslevel' must be an integer " |
| | "between 1 and 9. You provided 'compresslevel={}'" |
| | .format(compresslevel)) |
| |
|
| | if mode == "rb": |
| | self._mode = _MODE_READ |
| | self._decompressor = zlib.decompressobj(self.wbits) |
| | self._buffer = b"" |
| | self._buffer_offset = 0 |
| | elif mode == "wb": |
| | self._mode = _MODE_WRITE |
| | self._compressor = zlib.compressobj(self.compresslevel, |
| | zlib.DEFLATED, self.wbits, |
| | zlib.DEF_MEM_LEVEL, 0) |
| | else: |
| | raise ValueError("Invalid mode: %r" % (mode,)) |
| |
|
| | if isinstance(filename, str): |
| | self._fp = io.open(filename, mode) |
| | self._closefp = True |
| | elif hasattr(filename, "read") or hasattr(filename, "write"): |
| | self._fp = filename |
| | else: |
| | raise TypeError("filename must be a str or bytes object, " |
| | "or a file") |
| |
|
| | def close(self): |
| | """Flush and close the file. |
| | |
| | May be called more than once without error. Once the file is |
| | closed, any other operation on it will raise a ValueError. |
| | """ |
| | with self._lock: |
| | if self._mode == _MODE_CLOSED: |
| | return |
| | try: |
| | if self._mode in (_MODE_READ, _MODE_READ_EOF): |
| | self._decompressor = None |
| | elif self._mode == _MODE_WRITE: |
| | self._fp.write(self._compressor.flush()) |
| | self._compressor = None |
| | finally: |
| | try: |
| | if self._closefp: |
| | self._fp.close() |
| | finally: |
| | self._fp = None |
| | self._closefp = False |
| | self._mode = _MODE_CLOSED |
| | self._buffer = b"" |
| | self._buffer_offset = 0 |
| |
|
| | @property |
| | def closed(self): |
| | """True if this file is closed.""" |
| | return self._mode == _MODE_CLOSED |
| |
|
| | def fileno(self): |
| | """Return the file descriptor for the underlying file.""" |
| | self._check_not_closed() |
| | return self._fp.fileno() |
| |
|
| | def seekable(self): |
| | """Return whether the file supports seeking.""" |
| | return self.readable() and self._fp.seekable() |
| |
|
| | def readable(self): |
| | """Return whether the file was opened for reading.""" |
| | self._check_not_closed() |
| | return self._mode in (_MODE_READ, _MODE_READ_EOF) |
| |
|
| | def writable(self): |
| | """Return whether the file was opened for writing.""" |
| | self._check_not_closed() |
| | return self._mode == _MODE_WRITE |
| |
|
| | |
| |
|
| | def _check_not_closed(self): |
| | if self.closed: |
| | fname = getattr(self._fp, 'name', None) |
| | msg = "I/O operation on closed file" |
| | if fname is not None: |
| | msg += " {}".format(fname) |
| | msg += "." |
| | raise ValueError(msg) |
| |
|
| | def _check_can_read(self): |
| | if self._mode not in (_MODE_READ, _MODE_READ_EOF): |
| | self._check_not_closed() |
| | raise io.UnsupportedOperation("File not open for reading") |
| |
|
| | def _check_can_write(self): |
| | if self._mode != _MODE_WRITE: |
| | self._check_not_closed() |
| | raise io.UnsupportedOperation("File not open for writing") |
| |
|
| | def _check_can_seek(self): |
| | if self._mode not in (_MODE_READ, _MODE_READ_EOF): |
| | self._check_not_closed() |
| | raise io.UnsupportedOperation("Seeking is only supported " |
| | "on files open for reading") |
| | if not self._fp.seekable(): |
| | raise io.UnsupportedOperation("The underlying file object " |
| | "does not support seeking") |
| |
|
| | |
| | def _fill_buffer(self): |
| | if self._mode == _MODE_READ_EOF: |
| | return False |
| | |
| | |
| | while self._buffer_offset == len(self._buffer): |
| | try: |
| | rawblock = (self._decompressor.unused_data or |
| | self._fp.read(_BUFFER_SIZE)) |
| | if not rawblock: |
| | raise EOFError |
| | except EOFError: |
| | |
| | self._mode = _MODE_READ_EOF |
| | self._size = self._pos |
| | return False |
| | else: |
| | self._buffer = self._decompressor.decompress(rawblock) |
| | self._buffer_offset = 0 |
| | return True |
| |
|
| | |
| | |
| | def _read_all(self, return_data=True): |
| | |
| | self._buffer = self._buffer[self._buffer_offset:] |
| | self._buffer_offset = 0 |
| |
|
| | blocks = [] |
| | while self._fill_buffer(): |
| | if return_data: |
| | blocks.append(self._buffer) |
| | self._pos += len(self._buffer) |
| | self._buffer = b"" |
| | if return_data: |
| | return b"".join(blocks) |
| |
|
| | |
| | |
| | def _read_block(self, n_bytes, return_data=True): |
| | |
| | end = self._buffer_offset + n_bytes |
| | if end <= len(self._buffer): |
| | data = self._buffer[self._buffer_offset: end] |
| | self._buffer_offset = end |
| | self._pos += len(data) |
| | return data if return_data else None |
| |
|
| | |
| | self._buffer = self._buffer[self._buffer_offset:] |
| | self._buffer_offset = 0 |
| |
|
| | blocks = [] |
| | while n_bytes > 0 and self._fill_buffer(): |
| | if n_bytes < len(self._buffer): |
| | data = self._buffer[:n_bytes] |
| | self._buffer_offset = n_bytes |
| | else: |
| | data = self._buffer |
| | self._buffer = b"" |
| | if return_data: |
| | blocks.append(data) |
| | self._pos += len(data) |
| | n_bytes -= len(data) |
| | if return_data: |
| | return b"".join(blocks) |
| |
|
| | def read(self, size=-1): |
| | """Read up to size uncompressed bytes from the file. |
| | |
| | If size is negative or omitted, read until EOF is reached. |
| | Returns b'' if the file is already at EOF. |
| | """ |
| | with self._lock: |
| | self._check_can_read() |
| | if size == 0: |
| | return b"" |
| | elif size < 0: |
| | return self._read_all() |
| | else: |
| | return self._read_block(size) |
| |
|
| | def readinto(self, b): |
| | """Read up to len(b) bytes into b. |
| | |
| | Returns the number of bytes read (0 for EOF). |
| | """ |
| | with self._lock: |
| | return io.BufferedIOBase.readinto(self, b) |
| |
|
| | def write(self, data): |
| | """Write a byte string to the file. |
| | |
| | Returns the number of uncompressed bytes written, which is |
| | always len(data). Note that due to buffering, the file on disk |
| | may not reflect the data written until close() is called. |
| | """ |
| | with self._lock: |
| | self._check_can_write() |
| | |
| | if isinstance(data, memoryview): |
| | data = data.tobytes() |
| |
|
| | compressed = self._compressor.compress(data) |
| | self._fp.write(compressed) |
| | self._pos += len(data) |
| | return len(data) |
| |
|
| | |
| | def _rewind(self): |
| | self._fp.seek(0, 0) |
| | self._mode = _MODE_READ |
| | self._pos = 0 |
| | self._decompressor = zlib.decompressobj(self.wbits) |
| | self._buffer = b"" |
| | self._buffer_offset = 0 |
| |
|
| | def seek(self, offset, whence=0): |
| | """Change the file position. |
| | |
| | The new position is specified by offset, relative to the |
| | position indicated by whence. Values for whence are: |
| | |
| | 0: start of stream (default); offset must not be negative |
| | 1: current stream position |
| | 2: end of stream; offset must not be positive |
| | |
| | Returns the new file position. |
| | |
| | Note that seeking is emulated, so depending on the parameters, |
| | this operation may be extremely slow. |
| | """ |
| | with self._lock: |
| | self._check_can_seek() |
| |
|
| | |
| | if whence == 0: |
| | pass |
| | elif whence == 1: |
| | offset = self._pos + offset |
| | elif whence == 2: |
| | |
| | if self._size < 0: |
| | self._read_all(return_data=False) |
| | offset = self._size + offset |
| | else: |
| | raise ValueError("Invalid value for whence: %s" % (whence,)) |
| |
|
| | |
| | if offset < self._pos: |
| | self._rewind() |
| | else: |
| | offset -= self._pos |
| |
|
| | |
| | self._read_block(offset, return_data=False) |
| |
|
| | return self._pos |
| |
|
| | def tell(self): |
| | """Return the current file position.""" |
| | with self._lock: |
| | self._check_not_closed() |
| | return self._pos |
| |
|
| |
|
| | class ZlibCompressorWrapper(CompressorWrapper): |
| |
|
| | def __init__(self): |
| | CompressorWrapper.__init__(self, obj=BinaryZlibFile, |
| | prefix=_ZLIB_PREFIX, extension='.z') |
| |
|
| |
|
| | class BinaryGzipFile(BinaryZlibFile): |
| | """A file object providing transparent gzip (de)compression. |
| | |
| | If filename is a str or bytes object, it gives the name |
| | of the file to be opened. Otherwise, it should be a file object, |
| | which will be used to read or write the compressed data. |
| | |
| | mode can be 'rb' for reading (default) or 'wb' for (over)writing |
| | |
| | If mode is 'wb', compresslevel can be a number between 1 |
| | and 9 specifying the level of compression: 1 produces the least |
| | compression, and 9 produces the most compression. 3 is the default. |
| | """ |
| |
|
| | wbits = 31 |
| |
|
| |
|
| | class GzipCompressorWrapper(CompressorWrapper): |
| |
|
| | def __init__(self): |
| | CompressorWrapper.__init__(self, obj=BinaryGzipFile, |
| | prefix=_GZIP_PREFIX, extension='.gz') |
| |
|