Add files using upload-large-folder tool

.gitattributes

@@ -259,3 +259,10 @@ evalkit_cambrian/lib/libtinfo.so.6 filter=lfs diff=lfs merge=lfs -text
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 evalkit_cambrian/bin/unxz filter=lfs diff=lfs merge=lfs -text
 evalkit_cambrian/lib/libtinfo.so filter=lfs diff=lfs merge=lfs -text
+evalkit_cambrian/lib/libssl.so filter=lfs diff=lfs merge=lfs -text
+evalkit_llava/lib/python3.10/lib-dynload/_decimal.cpython-310-x86_64-linux-gnu.so filter=lfs diff=lfs merge=lfs -text
+evalkit_cambrian/lib/libz.so.1.2.13 filter=lfs diff=lfs merge=lfs -text
+evalkit_cambrian/bin/xz filter=lfs diff=lfs merge=lfs -text
+evalkit_cambrian/lib/python3.10/ensurepip/_bundled/setuptools-65.5.0-py3-none-any.whl filter=lfs diff=lfs merge=lfs -text
+evalkit_cambrian/lib/python3.10/tkinter/__pycache__/__init__.cpython-310.pyc filter=lfs diff=lfs merge=lfs -text
+evalkit_cambrian/lib/python3.10/ensurepip/_bundled/pip-23.0.1-py3-none-any.whl filter=lfs diff=lfs merge=lfs -text

evalkit_cambrian/bin/xz

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evalkit_cambrian/lib/libssl.so

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evalkit_cambrian/lib/libz.so.1.2.13

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evalkit_cambrian/lib/python3.10/distutils/command/bdist.py

@@ -0,0 +1,141 @@
+"""distutils.command.bdist
+
+Implements the Distutils 'bdist' command (create a built [binary]
+distribution)."""
+
+import os
+from distutils.core import Command
+from distutils.errors import *
+from distutils.util import get_platform
+
+
+def show_formats():
+    """Print list of available formats (arguments to "--format" option).
+    """
+    from distutils.fancy_getopt import FancyGetopt
+    formats = []
+    for format in bdist.format_commands:
+        formats.append(("formats=" + format, None,
+                        bdist.format_command[format][1]))
+    pretty_printer = FancyGetopt(formats)
+    pretty_printer.print_help("List of available distribution formats:")
+
+
+class bdist(Command):
+
+    description = "create a built (binary) distribution"
+
+    user_options = [('bdist-base=', 'b',
+                     "temporary directory for creating built distributions"),
+                    ('plat-name=', 'p',
+                     "platform name to embed in generated filenames "
+                     "(default: %s)" % get_platform()),
+                    ('formats=', None,
+                     "formats for distribution (comma-separated list)"),
+                    ('dist-dir=', 'd',
+                     "directory to put final built distributions in "
+                     "[default: dist]"),
+                    ('skip-build', None,
+                     "skip rebuilding everything (for testing/debugging)"),
+                    ('owner=', 'u',
+                     "Owner name used when creating a tar file"
+                     " [default: current user]"),
+                    ('group=', 'g',
+                     "Group name used when creating a tar file"
+                     " [default: current group]"),
+                   ]
+
+    boolean_options = ['skip-build']
+
+    help_options = [
+        ('help-formats', None,
+         "lists available distribution formats", show_formats),
+        ]
+
+    # The following commands do not take a format option from bdist
+    no_format_option = ('bdist_rpm',)
+
+    # This won't do in reality: will need to distinguish RPM-ish Linux,
+    # Debian-ish Linux, Solaris, FreeBSD, ..., Windows, Mac OS.
+    default_format = {'posix': 'gztar',
+                      'nt': 'zip'}
+
+    # Establish the preferred order (for the --help-formats option).
+    format_commands = ['rpm', 'gztar', 'bztar', 'xztar', 'ztar', 'tar',
+                       'zip', 'msi']
+
+    # And the real information.
+    format_command = {'rpm':   ('bdist_rpm',  "RPM distribution"),
+                      'gztar': ('bdist_dumb', "gzip'ed tar file"),
+                      'bztar': ('bdist_dumb', "bzip2'ed tar file"),
+                      'xztar': ('bdist_dumb', "xz'ed tar file"),
+                      'ztar':  ('bdist_dumb', "compressed tar file"),
+                      'tar':   ('bdist_dumb', "tar file"),
+                      'zip':   ('bdist_dumb', "ZIP file"),
+                      'msi':   ('bdist_msi',  "Microsoft Installer")
+                      }
+
+
+    def initialize_options(self):
+        self.bdist_base = None
+        self.plat_name = None
+        self.formats = None
+        self.dist_dir = None
+        self.skip_build = 0
+        self.group = None
+        self.owner = None
+
+    def finalize_options(self):
+        # have to finalize 'plat_name' before 'bdist_base'
+        if self.plat_name is None:
+            if self.skip_build:
+                self.plat_name = get_platform()
+            else:
+                self.plat_name = self.get_finalized_command('build').plat_name
+
+        # 'bdist_base' -- parent of per-built-distribution-format
+        # temporary directories (eg. we'll probably have
+        # "build/bdist.<plat>/dumb", "build/bdist.<plat>/rpm", etc.)
+        if self.bdist_base is None:
+            build_base = self.get_finalized_command('build').build_base
+            self.bdist_base = os.path.join(build_base,
+                                           'bdist.' + self.plat_name)
+
+        self.ensure_string_list('formats')
+        if self.formats is None:
+            try:
+                self.formats = [self.default_format[os.name]]
+            except KeyError:
+                raise DistutilsPlatformError(
+                      "don't know how to create built distributions "
+                      "on platform %s" % os.name)
+
+        if self.dist_dir is None:
+            self.dist_dir = "dist"
+
+    def run(self):
+        # Figure out which sub-commands we need to run.
+        commands = []
+        for format in self.formats:
+            try:
+                commands.append(self.format_command[format][0])
+            except KeyError:
+                raise DistutilsOptionError("invalid format '%s'" % format)
+
+        # Reinitialize and run each command.
+        for i in range(len(self.formats)):
+            cmd_name = commands[i]
+            sub_cmd = self.reinitialize_command(cmd_name)
+            if cmd_name not in self.no_format_option:
+                sub_cmd.format = self.formats[i]
+
+            # passing the owner and group names for tar archiving
+            if cmd_name == 'bdist_dumb':
+                sub_cmd.owner = self.owner
+                sub_cmd.group = self.group
+
+            # If we're going to need to run this command again, tell it to
+            # keep its temporary files around so subsequent runs go faster.
+            if cmd_name in commands[i+1:]:
+                sub_cmd.keep_temp = 1
+            self.run_command(cmd_name)

evalkit_cambrian/lib/python3.10/distutils/command/build_py.py

@@ -0,0 +1,416 @@
+"""distutils.command.build_py
+
+Implements the Distutils 'build_py' command."""
+
+import os
+import importlib.util
+import sys
+import glob
+
+from distutils.core import Command
+from distutils.errors import *
+from distutils.util import convert_path, Mixin2to3
+from distutils import log
+
+class build_py (Command):
+
+    description = "\"build\" pure Python modules (copy to build directory)"
+
+    user_options = [
+        ('build-lib=', 'd', "directory to \"build\" (copy) to"),
+        ('compile', 'c', "compile .py to .pyc"),
+        ('no-compile', None, "don't compile .py files [default]"),
+        ('optimize=', 'O',
+         "also compile with optimization: -O1 for \"python -O\", "
+         "-O2 for \"python -OO\", and -O0 to disable [default: -O0]"),
+        ('force', 'f', "forcibly build everything (ignore file timestamps)"),
+        ]
+
+    boolean_options = ['compile', 'force']
+    negative_opt = {'no-compile' : 'compile'}
+
+    def initialize_options(self):
+        self.build_lib = None
+        self.py_modules = None
+        self.package = None
+        self.package_data = None
+        self.package_dir = None
+        self.compile = 0
+        self.optimize = 0
+        self.force = None
+
+    def finalize_options(self):
+        self.set_undefined_options('build',
+                                   ('build_lib', 'build_lib'),
+                                   ('force', 'force'))
+
+        # Get the distribution options that are aliases for build_py
+        # options -- list of packages and list of modules.
+        self.packages = self.distribution.packages
+        self.py_modules = self.distribution.py_modules
+        self.package_data = self.distribution.package_data
+        self.package_dir = {}
+        if self.distribution.package_dir:
+            for name, path in self.distribution.package_dir.items():
+                self.package_dir[name] = convert_path(path)
+        self.data_files = self.get_data_files()
+
+        # Ick, copied straight from install_lib.py (fancy_getopt needs a
+        # type system!  Hell, *everything* needs a type system!!!)
+        if not isinstance(self.optimize, int):
+            try:
+                self.optimize = int(self.optimize)
+                assert 0 <= self.optimize <= 2
+            except (ValueError, AssertionError):
+                raise DistutilsOptionError("optimize must be 0, 1, or 2")
+
+    def run(self):
+        # XXX copy_file by default preserves atime and mtime.  IMHO this is
+        # the right thing to do, but perhaps it should be an option -- in
+        # particular, a site administrator might want installed files to
+        # reflect the time of installation rather than the last
+        # modification time before the installed release.
+
+        # XXX copy_file by default preserves mode, which appears to be the
+        # wrong thing to do: if a file is read-only in the working
+        # directory, we want it to be installed read/write so that the next
+        # installation of the same module distribution can overwrite it
+        # without problems.  (This might be a Unix-specific issue.)  Thus
+        # we turn off 'preserve_mode' when copying to the build directory,
+        # since the build directory is supposed to be exactly what the
+        # installation will look like (ie. we preserve mode when
+        # installing).
+
+        # Two options control which modules will be installed: 'packages'
+        # and 'py_modules'.  The former lets us work with whole packages, not
+        # specifying individual modules at all; the latter is for
+        # specifying modules one-at-a-time.
+
+        if self.py_modules:
+            self.build_modules()
+        if self.packages:
+            self.build_packages()
+            self.build_package_data()
+
+        self.byte_compile(self.get_outputs(include_bytecode=0))
+
+    def get_data_files(self):
+        """Generate list of '(package,src_dir,build_dir,filenames)' tuples"""
+        data = []
+        if not self.packages:
+            return data
+        for package in self.packages:
+            # Locate package source directory
+            src_dir = self.get_package_dir(package)
+
+            # Compute package build directory
+            build_dir = os.path.join(*([self.build_lib] + package.split('.')))
+
+            # Length of path to strip from found files
+            plen = 0
+            if src_dir:
+                plen = len(src_dir)+1
+
+            # Strip directory from globbed filenames
+            filenames = [
+                file[plen:] for file in self.find_data_files(package, src_dir)
+                ]
+            data.append((package, src_dir, build_dir, filenames))
+        return data
+
+    def find_data_files(self, package, src_dir):
+        """Return filenames for package's data files in 'src_dir'"""
+        globs = (self.package_data.get('', [])
+                 + self.package_data.get(package, []))
+        files = []
+        for pattern in globs:
+            # Each pattern has to be converted to a platform-specific path
+            filelist = glob.glob(os.path.join(glob.escape(src_dir), convert_path(pattern)))
+            # Files that match more than one pattern are only added once
+            files.extend([fn for fn in filelist if fn not in files
+                and os.path.isfile(fn)])
+        return files
+
+    def build_package_data(self):
+        """Copy data files into build directory"""
+        lastdir = None
+        for package, src_dir, build_dir, filenames in self.data_files:
+            for filename in filenames:
+                target = os.path.join(build_dir, filename)
+                self.mkpath(os.path.dirname(target))
+                self.copy_file(os.path.join(src_dir, filename), target,
+                               preserve_mode=False)
+
+    def get_package_dir(self, package):
+        """Return the directory, relative to the top of the source
+           distribution, where package 'package' should be found
+           (at least according to the 'package_dir' option, if any)."""
+        path = package.split('.')
+
+        if not self.package_dir:
+            if path:
+                return os.path.join(*path)
+            else:
+                return ''
+        else:
+            tail = []
+            while path:
+                try:
+                    pdir = self.package_dir['.'.join(path)]
+                except KeyError:
+                    tail.insert(0, path[-1])
+                    del path[-1]
+                else:
+                    tail.insert(0, pdir)
+                    return os.path.join(*tail)
+            else:
+                # Oops, got all the way through 'path' without finding a
+                # match in package_dir.  If package_dir defines a directory
+                # for the root (nameless) package, then fallback on it;
+                # otherwise, we might as well have not consulted
+                # package_dir at all, as we just use the directory implied
+                # by 'tail' (which should be the same as the original value
+                # of 'path' at this point).
+                pdir = self.package_dir.get('')
+                if pdir is not None:
+                    tail.insert(0, pdir)
+
+                if tail:
+                    return os.path.join(*tail)
+                else:
+                    return ''
+
+    def check_package(self, package, package_dir):
+        # Empty dir name means current directory, which we can probably
+        # assume exists.  Also, os.path.exists and isdir don't know about
+        # my "empty string means current dir" convention, so we have to
+        # circumvent them.
+        if package_dir != "":
+            if not os.path.exists(package_dir):
+                raise DistutilsFileError(
+                      "package directory '%s' does not exist" % package_dir)
+            if not os.path.isdir(package_dir):
+                raise DistutilsFileError(
+                       "supposed package directory '%s' exists, "
+                       "but is not a directory" % package_dir)
+
+        # Require __init__.py for all but the "root package"
+        if package:
+            init_py = os.path.join(package_dir, "__init__.py")
+            if os.path.isfile(init_py):
+                return init_py
+            else:
+                log.warn(("package init file '%s' not found " +
+                          "(or not a regular file)"), init_py)
+
+        # Either not in a package at all (__init__.py not expected), or
+        # __init__.py doesn't exist -- so don't return the filename.
+        return None
+
+    def check_module(self, module, module_file):
+        if not os.path.isfile(module_file):
+            log.warn("file %s (for module %s) not found", module_file, module)
+            return False
+        else:
+            return True
+
+    def find_package_modules(self, package, package_dir):
+        self.check_package(package, package_dir)
+        module_files = glob.glob(os.path.join(glob.escape(package_dir), "*.py"))
+        modules = []
+        setup_script = os.path.abspath(self.distribution.script_name)
+
+        for f in module_files:
+            abs_f = os.path.abspath(f)
+            if abs_f != setup_script:
+                module = os.path.splitext(os.path.basename(f))[0]
+                modules.append((package, module, f))
+            else:
+                self.debug_print("excluding %s" % setup_script)
+        return modules
+
+    def find_modules(self):
+        """Finds individually-specified Python modules, ie. those listed by
+        module name in 'self.py_modules'.  Returns a list of tuples (package,
+        module_base, filename): 'package' is a tuple of the path through
+        package-space to the module; 'module_base' is the bare (no
+        packages, no dots) module name, and 'filename' is the path to the
+        ".py" file (relative to the distribution root) that implements the
+        module.
+        """
+        # Map package names to tuples of useful info about the package:
+        #    (package_dir, checked)
+        # package_dir - the directory where we'll find source files for
+        #   this package
+        # checked - true if we have checked that the package directory
+        #   is valid (exists, contains __init__.py, ... ?)
+        packages = {}
+
+        # List of (package, module, filename) tuples to return
+        modules = []
+
+        # We treat modules-in-packages almost the same as toplevel modules,
+        # just the "package" for a toplevel is empty (either an empty
+        # string or empty list, depending on context).  Differences:
+        #   - don't check for __init__.py in directory for empty package
+        for module in self.py_modules:
+            path = module.split('.')
+            package = '.'.join(path[0:-1])
+            module_base = path[-1]
+
+            try:
+                (package_dir, checked) = packages[package]
+            except KeyError:
+                package_dir = self.get_package_dir(package)
+                checked = 0
+
+            if not checked:
+                init_py = self.check_package(package, package_dir)
+                packages[package] = (package_dir, 1)
+                if init_py:
+                    modules.append((package, "__init__", init_py))
+
+            # XXX perhaps we should also check for just .pyc files
+            # (so greedy closed-source bastards can distribute Python
+            # modules too)
+            module_file = os.path.join(package_dir, module_base + ".py")
+            if not self.check_module(module, module_file):
+                continue
+
+            modules.append((package, module_base, module_file))
+
+        return modules
+
+    def find_all_modules(self):
+        """Compute the list of all modules that will be built, whether
+        they are specified one-module-at-a-time ('self.py_modules') or
+        by whole packages ('self.packages').  Return a list of tuples
+        (package, module, module_file), just like 'find_modules()' and
+        'find_package_modules()' do."""
+        modules = []
+        if self.py_modules:
+            modules.extend(self.find_modules())
+        if self.packages:
+            for package in self.packages:
+                package_dir = self.get_package_dir(package)
+                m = self.find_package_modules(package, package_dir)
+                modules.extend(m)
+        return modules
+
+    def get_source_files(self):
+        return [module[-1] for module in self.find_all_modules()]
+
+    def get_module_outfile(self, build_dir, package, module):
+        outfile_path = [build_dir] + list(package) + [module + ".py"]
+        return os.path.join(*outfile_path)
+
+    def get_outputs(self, include_bytecode=1):
+        modules = self.find_all_modules()
+        outputs = []
+        for (package, module, module_file) in modules:
+            package = package.split('.')
+            filename = self.get_module_outfile(self.build_lib, package, module)
+            outputs.append(filename)
+            if include_bytecode:
+                if self.compile:
+                    outputs.append(importlib.util.cache_from_source(
+                        filename, optimization=''))
+                if self.optimize > 0:
+                    outputs.append(importlib.util.cache_from_source(
+                        filename, optimization=self.optimize))
+
+        outputs += [
+            os.path.join(build_dir, filename)
+            for package, src_dir, build_dir, filenames in self.data_files
+            for filename in filenames
+            ]
+
+        return outputs
+
+    def build_module(self, module, module_file, package):
+        if isinstance(package, str):
+            package = package.split('.')
+        elif not isinstance(package, (list, tuple)):
+            raise TypeError(
+                  "'package' must be a string (dot-separated), list, or tuple")
+
+        # Now put the module source file into the "build" area -- this is
+        # easy, we just copy it somewhere under self.build_lib (the build
+        # directory for Python source).
+        outfile = self.get_module_outfile(self.build_lib, package, module)
+        dir = os.path.dirname(outfile)
+        self.mkpath(dir)
+        return self.copy_file(module_file, outfile, preserve_mode=0)
+
+    def build_modules(self):
+        modules = self.find_modules()
+        for (package, module, module_file) in modules:
+            # Now "build" the module -- ie. copy the source file to
+            # self.build_lib (the build directory for Python source).
+            # (Actually, it gets copied to the directory for this package
+            # under self.build_lib.)
+            self.build_module(module, module_file, package)
+
+    def build_packages(self):
+        for package in self.packages:
+            # Get list of (package, module, module_file) tuples based on
+            # scanning the package directory.  'package' is only included
+            # in the tuple so that 'find_modules()' and
+            # 'find_package_tuples()' have a consistent interface; it's
+            # ignored here (apart from a sanity check).  Also, 'module' is
+            # the *unqualified* module name (ie. no dots, no package -- we
+            # already know its package!), and 'module_file' is the path to
+            # the .py file, relative to the current directory
+            # (ie. including 'package_dir').
+            package_dir = self.get_package_dir(package)
+            modules = self.find_package_modules(package, package_dir)
+
+            # Now loop over the modules we found, "building" each one (just
+            # copy it to self.build_lib).
+            for (package_, module, module_file) in modules:
+                assert package == package_
+                self.build_module(module, module_file, package)
+
+    def byte_compile(self, files):
+        if sys.dont_write_bytecode:
+            self.warn('byte-compiling is disabled, skipping.')
+            return
+
+        from distutils.util import byte_compile
+        prefix = self.build_lib
+        if prefix[-1] != os.sep:
+            prefix = prefix + os.sep
+
+        # XXX this code is essentially the same as the 'byte_compile()
+        # method of the "install_lib" command, except for the determination
+        # of the 'prefix' string.  Hmmm.
+        if self.compile:
+            byte_compile(files, optimize=0,
+                         force=self.force, prefix=prefix, dry_run=self.dry_run)
+        if self.optimize > 0:
+            byte_compile(files, optimize=self.optimize,
+                         force=self.force, prefix=prefix, dry_run=self.dry_run)
+
+class build_py_2to3(build_py, Mixin2to3):
+    def run(self):
+        self.updated_files = []
+
+        # Base class code
+        if self.py_modules:
+            self.build_modules()
+        if self.packages:
+            self.build_packages()
+            self.build_package_data()
+
+        # 2to3
+        self.run_2to3(self.updated_files)
+
+        # Remaining base class code
+        self.byte_compile(self.get_outputs(include_bytecode=0))
+
+    def build_module(self, module, module_file, package):
+        res = build_py.build_module(self, module, module_file, package)
+        if res[1]:
+            # file was copied
+            self.updated_files.append(res[0])
+        return res

evalkit_cambrian/lib/python3.10/distutils/command/build_scripts.py

@@ -0,0 +1,160 @@
+"""distutils.command.build_scripts
+
+Implements the Distutils 'build_scripts' command."""
+
+import os, re
+from stat import ST_MODE
+from distutils import sysconfig
+from distutils.core import Command
+from distutils.dep_util import newer
+from distutils.util import convert_path, Mixin2to3
+from distutils import log
+import tokenize
+
+# check if Python is called on the first line with this expression
+first_line_re = re.compile(b'^#!.*python[0-9.]*([ \t].*)?$')
+
+class build_scripts(Command):
+
+    description = "\"build\" scripts (copy and fixup #! line)"
+
+    user_options = [
+        ('build-dir=', 'd', "directory to \"build\" (copy) to"),
+        ('force', 'f', "forcibly build everything (ignore file timestamps"),
+        ('executable=', 'e', "specify final destination interpreter path"),
+        ]
+
+    boolean_options = ['force']
+
+
+    def initialize_options(self):
+        self.build_dir = None
+        self.scripts = None
+        self.force = None
+        self.executable = None
+        self.outfiles = None
+
+    def finalize_options(self):
+        self.set_undefined_options('build',
+                                   ('build_scripts', 'build_dir'),
+                                   ('force', 'force'),
+                                   ('executable', 'executable'))
+        self.scripts = self.distribution.scripts
+
+    def get_source_files(self):
+        return self.scripts
+
+    def run(self):
+        if not self.scripts:
+            return
+        self.copy_scripts()
+
+
+    def copy_scripts(self):
+        r"""Copy each script listed in 'self.scripts'; if it's marked as a
+        Python script in the Unix way (first line matches 'first_line_re',
+        ie. starts with "\#!" and contains "python"), then adjust the first
+        line to refer to the current Python interpreter as we copy.
+        """
+        self.mkpath(self.build_dir)
+        outfiles = []
+        updated_files = []
+        for script in self.scripts:
+            adjust = False
+            script = convert_path(script)
+            outfile = os.path.join(self.build_dir, os.path.basename(script))
+            outfiles.append(outfile)
+
+            if not self.force and not newer(script, outfile):
+                log.debug("not copying %s (up-to-date)", script)
+                continue
+
+            # Always open the file, but ignore failures in dry-run mode --
+            # that way, we'll get accurate feedback if we can read the
+            # script.
+            try:
+                f = open(script, "rb")
+            except OSError:
+                if not self.dry_run:
+                    raise
+                f = None
+            else:
+                encoding, lines = tokenize.detect_encoding(f.readline)
+                f.seek(0)
+                first_line = f.readline()
+                if not first_line:
+                    self.warn("%s is an empty file (skipping)" % script)
+                    continue
+
+                match = first_line_re.match(first_line)
+                if match:
+                    adjust = True
+                    post_interp = match.group(1) or b''
+
+            if adjust:
+                log.info("copying and adjusting %s -> %s", script,
+                         self.build_dir)
+                updated_files.append(outfile)
+                if not self.dry_run:
+                    if not sysconfig.python_build:
+                        executable = self.executable
+                    else:
+                        executable = os.path.join(
+                            sysconfig.get_config_var("BINDIR"),
+                           "python%s%s" % (sysconfig.get_config_var("VERSION"),
+                                           sysconfig.get_config_var("EXE")))
+                    executable = os.fsencode(executable)
+                    shebang = b"#!" + executable + post_interp + b"\n"
+                    # Python parser starts to read a script using UTF-8 until
+                    # it gets a #coding:xxx cookie. The shebang has to be the
+                    # first line of a file, the #coding:xxx cookie cannot be
+                    # written before. So the shebang has to be decodable from
+                    # UTF-8.
+                    try:
+                        shebang.decode('utf-8')
+                    except UnicodeDecodeError:
+                        raise ValueError(
+                            "The shebang ({!r}) is not decodable "
+                            "from utf-8".format(shebang))
+                    # If the script is encoded to a custom encoding (use a
+                    # #coding:xxx cookie), the shebang has to be decodable from
+                    # the script encoding too.
+                    try:
+                        shebang.decode(encoding)
+                    except UnicodeDecodeError:
+                        raise ValueError(
+                            "The shebang ({!r}) is not decodable "
+                            "from the script encoding ({})"
+                            .format(shebang, encoding))
+                    with open(outfile, "wb") as outf:
+                        outf.write(shebang)
+                        outf.writelines(f.readlines())
+                if f:
+                    f.close()
+            else:
+                if f:
+                    f.close()
+                updated_files.append(outfile)
+                self.copy_file(script, outfile)
+
+        if os.name == 'posix':
+            for file in outfiles:
+                if self.dry_run:
+                    log.info("changing mode of %s", file)
+                else:
+                    oldmode = os.stat(file)[ST_MODE] & 0o7777
+                    newmode = (oldmode | 0o555) & 0o7777
+                    if newmode != oldmode:
+                        log.info("changing mode of %s from %o to %o",
+                                 file, oldmode, newmode)
+                        os.chmod(file, newmode)
+        # XXX should we modify self.outfiles?
+        return outfiles, updated_files
+
+class build_scripts_2to3(build_scripts, Mixin2to3):
+
+    def copy_scripts(self):
+        outfiles, updated_files = build_scripts.copy_scripts(self)
+        if not self.dry_run:
+            self.run_2to3(updated_files)
+        return outfiles, updated_files

evalkit_cambrian/lib/python3.10/distutils/command/command_template

@@ -0,0 +1,33 @@
+"""distutils.command.x
+
+Implements the Distutils 'x' command.
+"""
+
+# created 2000/mm/dd, John Doe
+
+__revision__ = "$Id$"
+
+from distutils.core import Command
+
+
+class x(Command):
+
+    # Brief (40-50 characters) description of the command
+    description = ""
+
+    # List of option tuples: long name, short name (None if no short
+    # name), and help string.
+    user_options = [('', '',
+                     ""),
+                   ]
+
+    def initialize_options(self):
+        self. = None
+        self. = None
+        self. = None
+
+    def finalize_options(self):
+        if self.x is None:
+            self.x = 
+
+    def run(self):

evalkit_cambrian/lib/python3.10/distutils/command/install_headers.py

@@ -0,0 +1,47 @@
+"""distutils.command.install_headers
+
+Implements the Distutils 'install_headers' command, to install C/C++ header
+files to the Python include directory."""
+
+from distutils.core import Command
+
+
+# XXX force is never used
+class install_headers(Command):
+
+    description = "install C/C++ header files"
+
+    user_options = [('install-dir=', 'd',
+                     "directory to install header files to"),
+                    ('force', 'f',
+                     "force installation (overwrite existing files)"),
+                   ]
+
+    boolean_options = ['force']
+
+    def initialize_options(self):
+        self.install_dir = None
+        self.force = 0
+        self.outfiles = []
+
+    def finalize_options(self):
+        self.set_undefined_options('install',
+                                   ('install_headers', 'install_dir'),
+                                   ('force', 'force'))
+
+
+    def run(self):
+        headers = self.distribution.headers
+        if not headers:
+            return
+
+        self.mkpath(self.install_dir)
+        for header in headers:
+            (out, _) = self.copy_file(header, self.install_dir)
+            self.outfiles.append(out)
+
+    def get_inputs(self):
+        return self.distribution.headers or []
+
+    def get_outputs(self):
+        return self.outfiles

evalkit_cambrian/lib/python3.10/distutils/command/install_scripts.py

@@ -0,0 +1,60 @@
+"""distutils.command.install_scripts
+
+Implements the Distutils 'install_scripts' command, for installing
+Python scripts."""
+
+# contributed by Bastian Kleineidam
+
+import os
+from distutils.core import Command
+from distutils import log
+from stat import ST_MODE
+
+
+class install_scripts(Command):
+
+    description = "install scripts (Python or otherwise)"
+
+    user_options = [
+        ('install-dir=', 'd', "directory to install scripts to"),
+        ('build-dir=','b', "build directory (where to install from)"),
+        ('force', 'f', "force installation (overwrite existing files)"),
+        ('skip-build', None, "skip the build steps"),
+    ]
+
+    boolean_options = ['force', 'skip-build']
+
+    def initialize_options(self):
+        self.install_dir = None
+        self.force = 0
+        self.build_dir = None
+        self.skip_build = None
+
+    def finalize_options(self):
+        self.set_undefined_options('build', ('build_scripts', 'build_dir'))
+        self.set_undefined_options('install',
+                                   ('install_scripts', 'install_dir'),
+                                   ('force', 'force'),
+                                   ('skip_build', 'skip_build'),
+                                  )
+
+    def run(self):
+        if not self.skip_build:
+            self.run_command('build_scripts')
+        self.outfiles = self.copy_tree(self.build_dir, self.install_dir)
+        if os.name == 'posix':
+            # Set the executable bits (owner, group, and world) on
+            # all the scripts we just installed.
+            for file in self.get_outputs():
+                if self.dry_run:
+                    log.info("changing mode of %s", file)
+                else:
+                    mode = ((os.stat(file)[ST_MODE]) | 0o555) & 0o7777
+                    log.info("changing mode of %s to %o", file, mode)
+                    os.chmod(file, mode)
+
+    def get_inputs(self):
+        return self.distribution.scripts or []
+
+    def get_outputs(self):
+        return self.outfiles or []

evalkit_cambrian/lib/python3.10/distutils/command/upload.py

@@ -0,0 +1,215 @@
+"""
+distutils.command.upload
+
+Implements the Distutils 'upload' subcommand (upload package to a package
+index).
+"""
+
+import os
+import io
+import hashlib
+from base64 import standard_b64encode
+from urllib.error import HTTPError
+from urllib.request import urlopen, Request
+from urllib.parse import urlparse
+from distutils.errors import DistutilsError, DistutilsOptionError
+from distutils.core import PyPIRCCommand
+from distutils.spawn import spawn
+from distutils import log
+
+
+# PyPI Warehouse supports MD5, SHA256, and Blake2 (blake2-256)
+# https://bugs.python.org/issue40698
+_FILE_CONTENT_DIGESTS = {
+    "md5_digest": getattr(hashlib, "md5", None),
+    "sha256_digest": getattr(hashlib, "sha256", None),
+    "blake2_256_digest": getattr(hashlib, "blake2b", None),
+}
+
+
+class upload(PyPIRCCommand):
+
+    description = "upload binary package to PyPI"
+
+    user_options = PyPIRCCommand.user_options + [
+        ('sign', 's',
+         'sign files to upload using gpg'),
+        ('identity=', 'i', 'GPG identity used to sign files'),
+        ]
+
+    boolean_options = PyPIRCCommand.boolean_options + ['sign']
+
+    def initialize_options(self):
+        PyPIRCCommand.initialize_options(self)
+        self.username = ''
+        self.password = ''
+        self.show_response = 0
+        self.sign = False
+        self.identity = None
+
+    def finalize_options(self):
+        PyPIRCCommand.finalize_options(self)
+        if self.identity and not self.sign:
+            raise DistutilsOptionError(
+                "Must use --sign for --identity to have meaning"
+            )
+        config = self._read_pypirc()
+        if config != {}:
+            self.username = config['username']
+            self.password = config['password']
+            self.repository = config['repository']
+            self.realm = config['realm']
+
+        # getting the password from the distribution
+        # if previously set by the register command
+        if not self.password and self.distribution.password:
+            self.password = self.distribution.password
+
+    def run(self):
+        if not self.distribution.dist_files:
+            msg = ("Must create and upload files in one command "
+                   "(e.g. setup.py sdist upload)")
+            raise DistutilsOptionError(msg)
+        for command, pyversion, filename in self.distribution.dist_files:
+            self.upload_file(command, pyversion, filename)
+
+    def upload_file(self, command, pyversion, filename):
+        # Makes sure the repository URL is compliant
+        schema, netloc, url, params, query, fragments = \
+            urlparse(self.repository)
+        if params or query or fragments:
+            raise AssertionError("Incompatible url %s" % self.repository)
+
+        if schema not in ('http', 'https'):
+            raise AssertionError("unsupported schema " + schema)
+
+        # Sign if requested
+        if self.sign:
+            gpg_args = ["gpg", "--detach-sign", "-a", filename]
+            if self.identity:
+                gpg_args[2:2] = ["--local-user", self.identity]
+            spawn(gpg_args,
+                  dry_run=self.dry_run)
+
+        # Fill in the data - send all the meta-data in case we need to
+        # register a new release
+        f = open(filename,'rb')
+        try:
+            content = f.read()
+        finally:
+            f.close()
+
+        meta = self.distribution.metadata
+        data = {
+            # action
+            ':action': 'file_upload',
+            'protocol_version': '1',
+
+            # identify release
+            'name': meta.get_name(),
+            'version': meta.get_version(),
+
+            # file content
+            'content': (os.path.basename(filename),content),
+            'filetype': command,
+            'pyversion': pyversion,
+
+            # additional meta-data
+            'metadata_version': '1.0',
+            'summary': meta.get_description(),
+            'home_page': meta.get_url(),
+            'author': meta.get_contact(),
+            'author_email': meta.get_contact_email(),
+            'license': meta.get_licence(),
+            'description': meta.get_long_description(),
+            'keywords': meta.get_keywords(),
+            'platform': meta.get_platforms(),
+            'classifiers': meta.get_classifiers(),
+            'download_url': meta.get_download_url(),
+            # PEP 314
+            'provides': meta.get_provides(),
+            'requires': meta.get_requires(),
+            'obsoletes': meta.get_obsoletes(),
+            }
+
+        data['comment'] = ''
+
+        # file content digests
+        for digest_name, digest_cons in _FILE_CONTENT_DIGESTS.items():
+            if digest_cons is None:
+                continue
+            try:
+                data[digest_name] = digest_cons(content).hexdigest()
+            except ValueError:
+                # hash digest not available or blocked by security policy
+                pass
+
+        if self.sign:
+            with open(filename + ".asc", "rb") as f:
+                data['gpg_signature'] = (os.path.basename(filename) + ".asc",
+                                         f.read())
+
+        # set up the authentication
+        user_pass = (self.username + ":" + self.password).encode('ascii')
+        # The exact encoding of the authentication string is debated.
+        # Anyway PyPI only accepts ascii for both username or password.
+        auth = "Basic " + standard_b64encode(user_pass).decode('ascii')
+
+        # Build up the MIME payload for the POST data
+        boundary = '--------------GHSKFJDLGDS7543FJKLFHRE75642756743254'
+        sep_boundary = b'\r\n--' + boundary.encode('ascii')
+        end_boundary = sep_boundary + b'--\r\n'
+        body = io.BytesIO()
+        for key, value in data.items():
+            title = '\r\nContent-Disposition: form-data; name="%s"' % key
+            # handle multiple entries for the same name
+            if not isinstance(value, list):
+                value = [value]
+            for value in value:
+                if type(value) is tuple:
+                    title += '; filename="%s"' % value[0]
+                    value = value[1]
+                else:
+                    value = str(value).encode('utf-8')
+                body.write(sep_boundary)
+                body.write(title.encode('utf-8'))
+                body.write(b"\r\n\r\n")
+                body.write(value)
+        body.write(end_boundary)
+        body = body.getvalue()
+
+        msg = "Submitting %s to %s" % (filename, self.repository)
+        self.announce(msg, log.INFO)
+
+        # build the Request
+        headers = {
+            'Content-type': 'multipart/form-data; boundary=%s' % boundary,
+            'Content-length': str(len(body)),
+            'Authorization': auth,
+        }
+
+        request = Request(self.repository, data=body,
+                          headers=headers)
+        # send the data
+        try:
+            result = urlopen(request)
+            status = result.getcode()
+            reason = result.msg
+        except HTTPError as e:
+            status = e.code
+            reason = e.msg
+        except OSError as e:
+            self.announce(str(e), log.ERROR)
+            raise
+
+        if status == 200:
+            self.announce('Server response (%s): %s' % (status, reason),
+                          log.INFO)
+            if self.show_response:
+                text = self._read_pypi_response(result)
+                msg = '\n'.join(('-' * 75, text, '-' * 75))
+                self.announce(msg, log.INFO)
+        else:
+            msg = 'Upload failed (%s): %s' % (status, reason)
+            self.announce(msg, log.ERROR)
+            raise DistutilsError(msg)

evalkit_cambrian/lib/python3.10/ensurepip/_bundled/pip-23.0.1-py3-none-any.whl

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:236bcb61156d76c4b8a05821b988c7b8c35bf0da28a4b614e8d6ab5212c25c6f
+size 2055563

evalkit_cambrian/lib/python3.10/ensurepip/_bundled/setuptools-65.5.0-py3-none-any.whl

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f62ea9da9ed6289bfe868cd6845968a2c854d1427f8548d52cae02a42b4f0356
+size 1232695

evalkit_cambrian/lib/python3.10/lib2to3/Grammar.txt

@@ -0,0 +1,196 @@
+# Grammar for 2to3. This grammar supports Python 2.x and 3.x.
+
+# NOTE WELL: You should also follow all the steps listed at
+# https://devguide.python.org/grammar/
+
+# Start symbols for the grammar:
+#	file_input is a module or sequence of commands read from an input file;
+#	single_input is a single interactive statement;
+#	eval_input is the input for the eval() and input() functions.
+# NB: compound_stmt in single_input is followed by extra NEWLINE!
+file_input: (NEWLINE | stmt)* ENDMARKER
+single_input: NEWLINE | simple_stmt | compound_stmt NEWLINE
+eval_input: testlist NEWLINE* ENDMARKER
+
+decorator: '@' dotted_name [ '(' [arglist] ')' ] NEWLINE
+decorators: decorator+
+decorated: decorators (classdef | funcdef | async_funcdef)
+async_funcdef: ASYNC funcdef
+funcdef: 'def' NAME parameters ['->' test] ':' suite
+parameters: '(' [typedargslist] ')'
+
+# The following definition for typedarglist is equivalent to this set of rules:
+#
+#     arguments = argument (',' argument)*
+#     argument = tfpdef ['=' test]
+#     kwargs = '**' tname [',']
+#     args = '*' [tname]
+#     kwonly_kwargs = (',' argument)* [',' [kwargs]]
+#     args_kwonly_kwargs = args kwonly_kwargs | kwargs
+#     poskeyword_args_kwonly_kwargs = arguments [',' [args_kwonly_kwargs]]
+#     typedargslist_no_posonly  = poskeyword_args_kwonly_kwargs | args_kwonly_kwargs
+#     typedarglist = arguments ',' '/' [',' [typedargslist_no_posonly]])|(typedargslist_no_posonly)"
+#
+# It needs to be fully expanded to allow our LL(1) parser to work on it.
+
+typedargslist: tfpdef ['=' test] (',' tfpdef ['=' test])* ',' '/' [
+                     ',' [((tfpdef ['=' test] ',')* ('*' [tname] (',' tname ['=' test])*
+                            [',' ['**' tname [',']]] | '**' tname [','])
+                     | tfpdef ['=' test] (',' tfpdef ['=' test])* [','])]
+                ] | ((tfpdef ['=' test] ',')* ('*' [tname] (',' tname ['=' test])*
+                     [',' ['**' tname [',']]] | '**' tname [','])
+                     | tfpdef ['=' test] (',' tfpdef ['=' test])* [','])
+
+tname: NAME [':' test]
+tfpdef: tname | '(' tfplist ')'
+tfplist: tfpdef (',' tfpdef)* [',']
+
+# The following definition for varargslist is equivalent to this set of rules:
+#
+#     arguments = argument (',' argument )*
+#     argument = vfpdef ['=' test]
+#     kwargs = '**' vname [',']
+#     args = '*' [vname]
+#     kwonly_kwargs = (',' argument )* [',' [kwargs]]
+#     args_kwonly_kwargs = args kwonly_kwargs | kwargs
+#     poskeyword_args_kwonly_kwargs = arguments [',' [args_kwonly_kwargs]]
+#     vararglist_no_posonly = poskeyword_args_kwonly_kwargs | args_kwonly_kwargs
+#     varargslist = arguments ',' '/' [','[(vararglist_no_posonly)]] | (vararglist_no_posonly)
+#
+# It needs to be fully expanded to allow our LL(1) parser to work on it.
+
+varargslist: vfpdef ['=' test ](',' vfpdef ['=' test])* ',' '/' [',' [
+                     ((vfpdef ['=' test] ',')* ('*' [vname] (',' vname ['=' test])*
+                            [',' ['**' vname [',']]] | '**' vname [','])
+                            | vfpdef ['=' test] (',' vfpdef ['=' test])* [','])
+                     ]] | ((vfpdef ['=' test] ',')*
+                     ('*' [vname] (',' vname ['=' test])*  [',' ['**' vname [',']]]| '**' vname [','])
+                     | vfpdef ['=' test] (',' vfpdef ['=' test])* [','])
+
+vname: NAME
+vfpdef: vname | '(' vfplist ')'
+vfplist: vfpdef (',' vfpdef)* [',']
+
+stmt: simple_stmt | compound_stmt
+simple_stmt: small_stmt (';' small_stmt)* [';'] NEWLINE
+small_stmt: (expr_stmt | print_stmt  | del_stmt | pass_stmt | flow_stmt |
+             import_stmt | global_stmt | exec_stmt | assert_stmt)
+expr_stmt: testlist_star_expr (annassign | augassign (yield_expr|testlist) |
+                     ('=' (yield_expr|testlist_star_expr))*)
+annassign: ':' test ['=' test]
+testlist_star_expr: (test|star_expr) (',' (test|star_expr))* [',']
+augassign: ('+=' | '-=' | '*=' | '@=' | '/=' | '%=' | '&=' | '|=' | '^=' |
+            '<<=' | '>>=' | '**=' | '//=')
+# For normal and annotated assignments, additional restrictions enforced by the interpreter
+print_stmt: 'print' ( [ test (',' test)* [','] ] |
+                      '>>' test [ (',' test)+ [','] ] )
+del_stmt: 'del' exprlist
+pass_stmt: 'pass'
+flow_stmt: break_stmt | continue_stmt | return_stmt | raise_stmt | yield_stmt
+break_stmt: 'break'
+continue_stmt: 'continue'
+return_stmt: 'return' [testlist_star_expr]
+yield_stmt: yield_expr
+raise_stmt: 'raise' [test ['from' test | ',' test [',' test]]]
+import_stmt: import_name | import_from
+import_name: 'import' dotted_as_names
+import_from: ('from' ('.'* dotted_name | '.'+)
+              'import' ('*' | '(' import_as_names ')' | import_as_names))
+import_as_name: NAME ['as' NAME]
+dotted_as_name: dotted_name ['as' NAME]
+import_as_names: import_as_name (',' import_as_name)* [',']
+dotted_as_names: dotted_as_name (',' dotted_as_name)*
+dotted_name: NAME ('.' NAME)*
+global_stmt: ('global' | 'nonlocal') NAME (',' NAME)*
+exec_stmt: 'exec' expr ['in' test [',' test]]
+assert_stmt: 'assert' test [',' test]
+
+compound_stmt: if_stmt | while_stmt | for_stmt | try_stmt | with_stmt | funcdef | classdef | decorated | async_stmt
+async_stmt: ASYNC (funcdef | with_stmt | for_stmt)
+if_stmt: 'if' namedexpr_test ':' suite ('elif' namedexpr_test ':' suite)* ['else' ':' suite]
+while_stmt: 'while' namedexpr_test ':' suite ['else' ':' suite]
+for_stmt: 'for' exprlist 'in' testlist ':' suite ['else' ':' suite]
+try_stmt: ('try' ':' suite
+           ((except_clause ':' suite)+
+	    ['else' ':' suite]
+	    ['finally' ':' suite] |
+	   'finally' ':' suite))
+with_stmt: 'with' with_item (',' with_item)*  ':' suite
+with_item: test ['as' expr]
+with_var: 'as' expr
+# NB compile.c makes sure that the default except clause is last
+except_clause: 'except' [test [(',' | 'as') test]]
+suite: simple_stmt | NEWLINE INDENT stmt+ DEDENT
+
+# Backward compatibility cruft to support:
+# [ x for x in lambda: True, lambda: False if x() ]
+# even while also allowing:
+# lambda x: 5 if x else 2
+# (But not a mix of the two)
+testlist_safe: old_test [(',' old_test)+ [',']]
+old_test: or_test | old_lambdef
+old_lambdef: 'lambda' [varargslist] ':' old_test
+
+namedexpr_test: test [':=' test]
+test: or_test ['if' or_test 'else' test] | lambdef
+or_test: and_test ('or' and_test)*
+and_test: not_test ('and' not_test)*
+not_test: 'not' not_test | comparison
+comparison: expr (comp_op expr)*
+comp_op: '<'|'>'|'=='|'>='|'<='|'<>'|'!='|'in'|'not' 'in'|'is'|'is' 'not'
+star_expr: '*' expr
+expr: xor_expr ('|' xor_expr)*
+xor_expr: and_expr ('^' and_expr)*
+and_expr: shift_expr ('&' shift_expr)*
+shift_expr: arith_expr (('<<'|'>>') arith_expr)*
+arith_expr: term (('+'|'-') term)*
+term: factor (('*'|'@'|'/'|'%'|'//') factor)*
+factor: ('+'|'-'|'~') factor | power
+power: [AWAIT] atom trailer* ['**' factor]
+atom: ('(' [yield_expr|testlist_gexp] ')' |
+       '[' [listmaker] ']' |
+       '{' [dictsetmaker] '}' |
+       '`' testlist1 '`' |
+       NAME | NUMBER | STRING+ | '.' '.' '.')
+listmaker: (namedexpr_test|star_expr) ( comp_for | (',' (namedexpr_test|star_expr))* [','] )
+testlist_gexp: (namedexpr_test|star_expr) ( comp_for | (',' (namedexpr_test|star_expr))* [','] )
+lambdef: 'lambda' [varargslist] ':' test
+trailer: '(' [arglist] ')' | '[' subscriptlist ']' | '.' NAME
+subscriptlist: subscript (',' subscript)* [',']
+subscript: test | [test] ':' [test] [sliceop]
+sliceop: ':' [test]
+exprlist: (expr|star_expr) (',' (expr|star_expr))* [',']
+testlist: test (',' test)* [',']
+dictsetmaker: ( ((test ':' test | '**' expr)
+                 (comp_for | (',' (test ':' test | '**' expr))* [','])) |
+                ((test | star_expr)
+		 (comp_for | (',' (test | star_expr))* [','])) )
+
+classdef: 'class' NAME ['(' [arglist] ')'] ':' suite
+
+arglist: argument (',' argument)* [',']
+
+# "test '=' test" is really "keyword '=' test", but we have no such token.
+# These need to be in a single rule to avoid grammar that is ambiguous
+# to our LL(1) parser. Even though 'test' includes '*expr' in star_expr,
+# we explicitly match '*' here, too, to give it proper precedence.
+# Illegal combinations and orderings are blocked in ast.c:
+# multiple (test comp_for) arguments are blocked; keyword unpackings
+# that precede iterable unpackings are blocked; etc.
+argument: ( test [comp_for] |
+            test ':=' test |
+            test '=' test |
+            '**' test |
+	        '*' test )
+
+comp_iter: comp_for | comp_if
+comp_for: [ASYNC] 'for' exprlist 'in' testlist_safe [comp_iter]
+comp_if: 'if' old_test [comp_iter]
+
+testlist1: test (',' test)*
+
+# not used in grammar, but may appear in "node" passed from Parser to Compiler
+encoding_decl: NAME
+
+yield_expr: 'yield' [yield_arg]
+yield_arg: 'from' test | testlist_star_expr

evalkit_cambrian/lib/python3.10/lib2to3/PatternGrammar.txt

@@ -0,0 +1,28 @@
+# Copyright 2006 Google, Inc. All Rights Reserved.
+# Licensed to PSF under a Contributor Agreement.
+
+# A grammar to describe tree matching patterns.
+# Not shown here:
+# - 'TOKEN' stands for any token (leaf node)
+# - 'any' stands for any node (leaf or interior)
+# With 'any' we can still specify the sub-structure.
+
+# The start symbol is 'Matcher'.
+
+Matcher: Alternatives ENDMARKER
+
+Alternatives: Alternative ('|' Alternative)*
+
+Alternative: (Unit | NegatedUnit)+
+
+Unit: [NAME '='] ( STRING [Repeater]
+                 | NAME [Details] [Repeater]
+                 | '(' Alternatives ')' [Repeater]
+                 | '[' Alternatives ']'
+		 )
+
+NegatedUnit: 'not' (STRING | NAME [Details] | '(' Alternatives ')')
+
+Repeater: '*' | '+' | '{' NUMBER [',' NUMBER] '}'
+
+Details: '<' Alternatives '>'

evalkit_cambrian/lib/python3.10/lib2to3/__init__.py

@@ -0,0 +1,8 @@
+import warnings
+
+
+warnings.warn(
+    "lib2to3 package is deprecated and may not be able to parse Python 3.10+",
+    PendingDeprecationWarning,
+    stacklevel=2,
+)

evalkit_cambrian/lib/python3.10/lib2to3/__main__.py

@@ -0,0 +1,4 @@
+import sys
+from .main import main
+
+sys.exit(main("lib2to3.fixes"))

evalkit_cambrian/lib/python3.10/lib2to3/btm_matcher.py

@@ -0,0 +1,163 @@
+"""A bottom-up tree matching algorithm implementation meant to speed
+up 2to3's matching process. After the tree patterns are reduced to
+their rarest linear path, a linear Aho-Corasick automaton is
+created. The linear automaton traverses the linear paths from the
+leaves to the root of the AST and returns a set of nodes for further
+matching. This reduces significantly the number of candidate nodes."""
+
+__author__ = "George Boutsioukis <gboutsioukis@gmail.com>"
+
+import logging
+import itertools
+from collections import defaultdict
+
+from . import pytree
+from .btm_utils import reduce_tree
+
+class BMNode(object):
+    """Class for a node of the Aho-Corasick automaton used in matching"""
+    count = itertools.count()
+    def __init__(self):
+        self.transition_table = {}
+        self.fixers = []
+        self.id = next(BMNode.count)
+        self.content = ''
+
+class BottomMatcher(object):
+    """The main matcher class. After instantiating the patterns should
+    be added using the add_fixer method"""
+
+    def __init__(self):
+        self.match = set()
+        self.root = BMNode()
+        self.nodes = [self.root]
+        self.fixers = []
+        self.logger = logging.getLogger("RefactoringTool")
+
+    def add_fixer(self, fixer):
+        """Reduces a fixer's pattern tree to a linear path and adds it
+        to the matcher(a common Aho-Corasick automaton). The fixer is
+        appended on the matching states and called when they are
+        reached"""
+        self.fixers.append(fixer)
+        tree = reduce_tree(fixer.pattern_tree)
+        linear = tree.get_linear_subpattern()
+        match_nodes = self.add(linear, start=self.root)
+        for match_node in match_nodes:
+            match_node.fixers.append(fixer)
+
+    def add(self, pattern, start):
+        "Recursively adds a linear pattern to the AC automaton"
+        #print("adding pattern", pattern, "to", start)
+        if not pattern:
+            #print("empty pattern")
+            return [start]
+        if isinstance(pattern[0], tuple):
+            #alternatives
+            #print("alternatives")
+            match_nodes = []
+            for alternative in pattern[0]:
+                #add all alternatives, and add the rest of the pattern
+                #to each end node
+                end_nodes = self.add(alternative, start=start)
+                for end in end_nodes:
+                    match_nodes.extend(self.add(pattern[1:], end))
+            return match_nodes
+        else:
+            #single token
+            #not last
+            if pattern[0] not in start.transition_table:
+                #transition did not exist, create new
+                next_node = BMNode()
+                start.transition_table[pattern[0]] = next_node
+            else:
+                #transition exists already, follow
+                next_node = start.transition_table[pattern[0]]
+
+            if pattern[1:]:
+                end_nodes = self.add(pattern[1:], start=next_node)
+            else:
+                end_nodes = [next_node]
+            return end_nodes
+
+    def run(self, leaves):
+        """The main interface with the bottom matcher. The tree is
+        traversed from the bottom using the constructed
+        automaton. Nodes are only checked once as the tree is
+        retraversed. When the automaton fails, we give it one more
+        shot(in case the above tree matches as a whole with the
+        rejected leaf), then we break for the next leaf. There is the
+        special case of multiple arguments(see code comments) where we
+        recheck the nodes
+
+        Args:
+           The leaves of the AST tree to be matched
+
+        Returns:
+           A dictionary of node matches with fixers as the keys
+        """
+        current_ac_node = self.root
+        results = defaultdict(list)
+        for leaf in leaves:
+            current_ast_node = leaf
+            while current_ast_node:
+                current_ast_node.was_checked = True
+                for child in current_ast_node.children:
+                    # multiple statements, recheck
+                    if isinstance(child, pytree.Leaf) and child.value == ";":
+                        current_ast_node.was_checked = False
+                        break
+                if current_ast_node.type == 1:
+                    #name
+                    node_token = current_ast_node.value
+                else:
+                    node_token = current_ast_node.type
+
+                if node_token in current_ac_node.transition_table:
+                    #token matches
+                    current_ac_node = current_ac_node.transition_table[node_token]
+                    for fixer in current_ac_node.fixers:
+                        results[fixer].append(current_ast_node)
+                else:
+                    #matching failed, reset automaton
+                    current_ac_node = self.root
+                    if (current_ast_node.parent is not None
+                        and current_ast_node.parent.was_checked):
+                        #the rest of the tree upwards has been checked, next leaf
+                        break
+
+                    #recheck the rejected node once from the root
+                    if node_token in current_ac_node.transition_table:
+                        #token matches
+                        current_ac_node = current_ac_node.transition_table[node_token]
+                        for fixer in current_ac_node.fixers:
+                            results[fixer].append(current_ast_node)
+
+                current_ast_node = current_ast_node.parent
+        return results
+
+    def print_ac(self):
+        "Prints a graphviz diagram of the BM automaton(for debugging)"
+        print("digraph g{")
+        def print_node(node):
+            for subnode_key in node.transition_table.keys():
+                subnode = node.transition_table[subnode_key]
+                print("%d -> %d [label=%s] //%s" %
+                      (node.id, subnode.id, type_repr(subnode_key), str(subnode.fixers)))
+                if subnode_key == 1:
+                    print(subnode.content)
+                print_node(subnode)
+        print_node(self.root)
+        print("}")
+
+# taken from pytree.py for debugging; only used by print_ac
+_type_reprs = {}
+def type_repr(type_num):
+    global _type_reprs
+    if not _type_reprs:
+        from .pygram import python_symbols
+        # printing tokens is possible but not as useful
+        # from .pgen2 import token // token.__dict__.items():
+        for name, val in python_symbols.__dict__.items():
+            if type(val) == int: _type_reprs[val] = name
+    return _type_reprs.setdefault(type_num, type_num)

evalkit_cambrian/lib/python3.10/lib2to3/btm_utils.py

@@ -0,0 +1,281 @@
+"Utility functions used by the btm_matcher module"
+
+from . import pytree
+from .pgen2 import grammar, token
+from .pygram import pattern_symbols, python_symbols
+
+syms = pattern_symbols
+pysyms = python_symbols
+tokens = grammar.opmap
+token_labels = token
+
+TYPE_ANY = -1
+TYPE_ALTERNATIVES = -2
+TYPE_GROUP = -3
+
+class MinNode(object):
+    """This class serves as an intermediate representation of the
+    pattern tree during the conversion to sets of leaf-to-root
+    subpatterns"""
+
+    def __init__(self, type=None, name=None):
+        self.type = type
+        self.name = name
+        self.children = []
+        self.leaf = False
+        self.parent = None
+        self.alternatives = []
+        self.group = []
+
+    def __repr__(self):
+        return str(self.type) + ' ' + str(self.name)
+
+    def leaf_to_root(self):
+        """Internal method. Returns a characteristic path of the
+        pattern tree. This method must be run for all leaves until the
+        linear subpatterns are merged into a single"""
+        node = self
+        subp = []
+        while node:
+            if node.type == TYPE_ALTERNATIVES:
+                node.alternatives.append(subp)
+                if len(node.alternatives) == len(node.children):
+                    #last alternative
+                    subp = [tuple(node.alternatives)]
+                    node.alternatives = []
+                    node = node.parent
+                    continue
+                else:
+                    node = node.parent
+                    subp = None
+                    break
+
+            if node.type == TYPE_GROUP:
+                node.group.append(subp)
+                #probably should check the number of leaves
+                if len(node.group) == len(node.children):
+                    subp = get_characteristic_subpattern(node.group)
+                    node.group = []
+                    node = node.parent
+                    continue
+                else:
+                    node = node.parent
+                    subp = None
+                    break
+
+            if node.type == token_labels.NAME and node.name:
+                #in case of type=name, use the name instead
+                subp.append(node.name)
+            else:
+                subp.append(node.type)
+
+            node = node.parent
+        return subp
+
+    def get_linear_subpattern(self):
+        """Drives the leaf_to_root method. The reason that
+        leaf_to_root must be run multiple times is because we need to
+        reject 'group' matches; for example the alternative form
+        (a | b c) creates a group [b c] that needs to be matched. Since
+        matching multiple linear patterns overcomes the automaton's
+        capabilities, leaf_to_root merges each group into a single
+        choice based on 'characteristic'ity,
+
+        i.e. (a|b c) -> (a|b) if b more characteristic than c
+
+        Returns: The most 'characteristic'(as defined by
+          get_characteristic_subpattern) path for the compiled pattern
+          tree.
+        """
+
+        for l in self.leaves():
+            subp = l.leaf_to_root()
+            if subp:
+                return subp
+
+    def leaves(self):
+        "Generator that returns the leaves of the tree"
+        for child in self.children:
+            yield from child.leaves()
+        if not self.children:
+            yield self
+
+def reduce_tree(node, parent=None):
+    """
+    Internal function. Reduces a compiled pattern tree to an
+    intermediate representation suitable for feeding the
+    automaton. This also trims off any optional pattern elements(like
+    [a], a*).
+    """
+
+    new_node = None
+    #switch on the node type
+    if node.type == syms.Matcher:
+        #skip
+        node = node.children[0]
+
+    if node.type == syms.Alternatives  :
+        #2 cases
+        if len(node.children) <= 2:
+            #just a single 'Alternative', skip this node
+            new_node = reduce_tree(node.children[0], parent)
+        else:
+            #real alternatives
+            new_node = MinNode(type=TYPE_ALTERNATIVES)
+            #skip odd children('|' tokens)
+            for child in node.children:
+                if node.children.index(child)%2:
+                    continue
+                reduced = reduce_tree(child, new_node)
+                if reduced is not None:
+                    new_node.children.append(reduced)
+    elif node.type == syms.Alternative:
+        if len(node.children) > 1:
+
+            new_node = MinNode(type=TYPE_GROUP)
+            for child in node.children:
+                reduced = reduce_tree(child, new_node)
+                if reduced:
+                    new_node.children.append(reduced)
+            if not new_node.children:
+                # delete the group if all of the children were reduced to None
+                new_node = None
+
+        else:
+            new_node = reduce_tree(node.children[0], parent)
+
+    elif node.type == syms.Unit:
+        if (isinstance(node.children[0], pytree.Leaf) and
+            node.children[0].value == '('):
+            #skip parentheses
+            return reduce_tree(node.children[1], parent)
+        if ((isinstance(node.children[0], pytree.Leaf) and
+               node.children[0].value == '[')
+               or
+               (len(node.children)>1 and
+               hasattr(node.children[1], "value") and
+               node.children[1].value == '[')):
+            #skip whole unit if its optional
+            return None
+
+        leaf = True
+        details_node = None
+        alternatives_node = None
+        has_repeater = False
+        repeater_node = None
+        has_variable_name = False
+
+        for child in node.children:
+            if child.type == syms.Details:
+                leaf = False
+                details_node = child
+            elif child.type == syms.Repeater:
+                has_repeater = True
+                repeater_node = child
+            elif child.type == syms.Alternatives:
+                alternatives_node = child
+            if hasattr(child, 'value') and child.value == '=': # variable name
+                has_variable_name = True
+
+        #skip variable name
+        if has_variable_name:
+            #skip variable name, '='
+            name_leaf = node.children[2]
+            if hasattr(name_leaf, 'value') and name_leaf.value == '(':
+                # skip parenthesis
+                name_leaf = node.children[3]
+        else:
+            name_leaf = node.children[0]
+
+        #set node type
+        if name_leaf.type == token_labels.NAME:
+            #(python) non-name or wildcard
+            if name_leaf.value == 'any':
+                new_node = MinNode(type=TYPE_ANY)
+            else:
+                if hasattr(token_labels, name_leaf.value):
+                    new_node = MinNode(type=getattr(token_labels, name_leaf.value))
+                else:
+                    new_node = MinNode(type=getattr(pysyms, name_leaf.value))
+
+        elif name_leaf.type == token_labels.STRING:
+            #(python) name or character; remove the apostrophes from
+            #the string value
+            name = name_leaf.value.strip("'")
+            if name in tokens:
+                new_node = MinNode(type=tokens[name])
+            else:
+                new_node = MinNode(type=token_labels.NAME, name=name)
+        elif name_leaf.type == syms.Alternatives:
+            new_node = reduce_tree(alternatives_node, parent)
+
+        #handle repeaters
+        if has_repeater:
+            if repeater_node.children[0].value == '*':
+                #reduce to None
+                new_node = None
+            elif repeater_node.children[0].value == '+':
+                #reduce to a single occurrence i.e. do nothing
+                pass
+            else:
+                #TODO: handle {min, max} repeaters
+                raise NotImplementedError
+                pass
+
+        #add children
+        if details_node and new_node is not None:
+            for child in details_node.children[1:-1]:
+                #skip '<', '>' markers
+                reduced = reduce_tree(child, new_node)
+                if reduced is not None:
+                    new_node.children.append(reduced)
+    if new_node:
+        new_node.parent = parent
+    return new_node
+
+
+def get_characteristic_subpattern(subpatterns):
+    """Picks the most characteristic from a list of linear patterns
+    Current order used is:
+    names > common_names > common_chars
+    """
+    if not isinstance(subpatterns, list):
+        return subpatterns
+    if len(subpatterns)==1:
+        return subpatterns[0]
+
+    # first pick out the ones containing variable names
+    subpatterns_with_names = []
+    subpatterns_with_common_names = []
+    common_names = ['in', 'for', 'if' , 'not', 'None']
+    subpatterns_with_common_chars = []
+    common_chars = "[]().,:"
+    for subpattern in subpatterns:
+        if any(rec_test(subpattern, lambda x: type(x) is str)):
+            if any(rec_test(subpattern,
+                            lambda x: isinstance(x, str) and x in common_chars)):
+                subpatterns_with_common_chars.append(subpattern)
+            elif any(rec_test(subpattern,
+                              lambda x: isinstance(x, str) and x in common_names)):
+                subpatterns_with_common_names.append(subpattern)
+
+            else:
+                subpatterns_with_names.append(subpattern)
+
+    if subpatterns_with_names:
+        subpatterns = subpatterns_with_names
+    elif subpatterns_with_common_names:
+        subpatterns = subpatterns_with_common_names
+    elif subpatterns_with_common_chars:
+        subpatterns = subpatterns_with_common_chars
+    # of the remaining subpatterns pick out the longest one
+    return max(subpatterns, key=len)
+
+def rec_test(sequence, test_func):
+    """Tests test_func on all items of sequence and items of included
+    sub-iterables"""
+    for x in sequence:
+        if isinstance(x, (list, tuple)):
+            yield from rec_test(x, test_func)
+        else:
+            yield test_func(x)

evalkit_cambrian/lib/python3.10/lib2to3/fixer_base.py

@@ -0,0 +1,186 @@
+# Copyright 2006 Google, Inc. All Rights Reserved.
+# Licensed to PSF under a Contributor Agreement.
+
+"""Base class for fixers (optional, but recommended)."""
+
+# Python imports
+import itertools
+
+# Local imports
+from .patcomp import PatternCompiler
+from . import pygram
+from .fixer_util import does_tree_import
+
+class BaseFix(object):
+
+    """Optional base class for fixers.
+
+    The subclass name must be FixFooBar where FooBar is the result of
+    removing underscores and capitalizing the words of the fix name.
+    For example, the class name for a fixer named 'has_key' should be
+    FixHasKey.
+    """
+
+    PATTERN = None  # Most subclasses should override with a string literal
+    pattern = None  # Compiled pattern, set by compile_pattern()
+    pattern_tree = None # Tree representation of the pattern
+    options = None  # Options object passed to initializer
+    filename = None # The filename (set by set_filename)
+    numbers = itertools.count(1) # For new_name()
+    used_names = set() # A set of all used NAMEs
+    order = "post" # Does the fixer prefer pre- or post-order traversal
+    explicit = False # Is this ignored by refactor.py -f all?
+    run_order = 5   # Fixers will be sorted by run order before execution
+                    # Lower numbers will be run first.
+    _accept_type = None # [Advanced and not public] This tells RefactoringTool
+                        # which node type to accept when there's not a pattern.
+
+    keep_line_order = False # For the bottom matcher: match with the
+                            # original line order
+    BM_compatible = False # Compatibility with the bottom matching
+                          # module; every fixer should set this
+                          # manually
+
+    # Shortcut for access to Python grammar symbols
+    syms = pygram.python_symbols
+
+    def __init__(self, options, log):
+        """Initializer.  Subclass may override.
+
+        Args:
+            options: a dict containing the options passed to RefactoringTool
+            that could be used to customize the fixer through the command line.
+            log: a list to append warnings and other messages to.
+        """
+        self.options = options
+        self.log = log
+        self.compile_pattern()
+
+    def compile_pattern(self):
+        """Compiles self.PATTERN into self.pattern.
+
+        Subclass may override if it doesn't want to use
+        self.{pattern,PATTERN} in .match().
+        """
+        if self.PATTERN is not None:
+            PC = PatternCompiler()
+            self.pattern, self.pattern_tree = PC.compile_pattern(self.PATTERN,
+                                                                 with_tree=True)
+
+    def set_filename(self, filename):
+        """Set the filename.
+
+        The main refactoring tool should call this.
+        """
+        self.filename = filename
+
+    def match(self, node):
+        """Returns match for a given parse tree node.
+
+        Should return a true or false object (not necessarily a bool).
+        It may return a non-empty dict of matching sub-nodes as
+        returned by a matching pattern.
+
+        Subclass may override.
+        """
+        results = {"node": node}
+        return self.pattern.match(node, results) and results
+
+    def transform(self, node, results):
+        """Returns the transformation for a given parse tree node.
+
+        Args:
+          node: the root of the parse tree that matched the fixer.
+          results: a dict mapping symbolic names to part of the match.
+
+        Returns:
+          None, or a node that is a modified copy of the
+          argument node.  The node argument may also be modified in-place to
+          effect the same change.
+
+        Subclass *must* override.
+        """
+        raise NotImplementedError()
+
+    def new_name(self, template="xxx_todo_changeme"):
+        """Return a string suitable for use as an identifier
+
+        The new name is guaranteed not to conflict with other identifiers.
+        """
+        name = template
+        while name in self.used_names:
+            name = template + str(next(self.numbers))
+        self.used_names.add(name)
+        return name
+
+    def log_message(self, message):
+        if self.first_log:
+            self.first_log = False
+            self.log.append("### In file %s ###" % self.filename)
+        self.log.append(message)
+
+    def cannot_convert(self, node, reason=None):
+        """Warn the user that a given chunk of code is not valid Python 3,
+        but that it cannot be converted automatically.
+
+        First argument is the top-level node for the code in question.
+        Optional second argument is why it can't be converted.
+        """
+        lineno = node.get_lineno()
+        for_output = node.clone()
+        for_output.prefix = ""
+        msg = "Line %d: could not convert: %s"
+        self.log_message(msg % (lineno, for_output))
+        if reason:
+            self.log_message(reason)
+
+    def warning(self, node, reason):
+        """Used for warning the user about possible uncertainty in the
+        translation.
+
+        First argument is the top-level node for the code in question.
+        Optional second argument is why it can't be converted.
+        """
+        lineno = node.get_lineno()
+        self.log_message("Line %d: %s" % (lineno, reason))
+
+    def start_tree(self, tree, filename):
+        """Some fixers need to maintain tree-wide state.
+        This method is called once, at the start of tree fix-up.
+
+        tree - the root node of the tree to be processed.
+        filename - the name of the file the tree came from.
+        """
+        self.used_names = tree.used_names
+        self.set_filename(filename)
+        self.numbers = itertools.count(1)
+        self.first_log = True
+
+    def finish_tree(self, tree, filename):
+        """Some fixers need to maintain tree-wide state.
+        This method is called once, at the conclusion of tree fix-up.
+
+        tree - the root node of the tree to be processed.
+        filename - the name of the file the tree came from.
+        """
+        pass
+
+
+class ConditionalFix(BaseFix):
+    """ Base class for fixers which not execute if an import is found. """
+
+    # This is the name of the import which, if found, will cause the test to be skipped
+    skip_on = None
+
+    def start_tree(self, *args):
+        super(ConditionalFix, self).start_tree(*args)
+        self._should_skip = None
+
+    def should_skip(self, node):
+        if self._should_skip is not None:
+            return self._should_skip
+        pkg = self.skip_on.split(".")
+        name = pkg[-1]
+        pkg = ".".join(pkg[:-1])
+        self._should_skip = does_tree_import(pkg, name, node)
+        return self._should_skip

evalkit_cambrian/lib/python3.10/lib2to3/fixer_util.py

@@ -0,0 +1,453 @@
+"""Utility functions, node construction macros, etc."""
+# Author: Collin Winter
+
+# Local imports
+from .pgen2 import token
+from .pytree import Leaf, Node
+from .pygram import python_symbols as syms
+from . import patcomp
+
+
+###########################################################
+### Common node-construction "macros"
+###########################################################
+
+def KeywordArg(keyword, value):
+    return Node(syms.argument,
+                [keyword, Leaf(token.EQUAL, "="), value])
+
+def LParen():
+    return Leaf(token.LPAR, "(")
+
+def RParen():
+    return Leaf(token.RPAR, ")")
+
+def Assign(target, source):
+    """Build an assignment statement"""
+    if not isinstance(target, list):
+        target = [target]
+    if not isinstance(source, list):
+        source.prefix = " "
+        source = [source]
+
+    return Node(syms.atom,
+                target + [Leaf(token.EQUAL, "=", prefix=" ")] + source)
+
+def Name(name, prefix=None):
+    """Return a NAME leaf"""
+    return Leaf(token.NAME, name, prefix=prefix)
+
+def Attr(obj, attr):
+    """A node tuple for obj.attr"""
+    return [obj, Node(syms.trailer, [Dot(), attr])]
+
+def Comma():
+    """A comma leaf"""
+    return Leaf(token.COMMA, ",")
+
+def Dot():
+    """A period (.) leaf"""
+    return Leaf(token.DOT, ".")
+
+def ArgList(args, lparen=LParen(), rparen=RParen()):
+    """A parenthesised argument list, used by Call()"""
+    node = Node(syms.trailer, [lparen.clone(), rparen.clone()])
+    if args:
+        node.insert_child(1, Node(syms.arglist, args))
+    return node
+
+def Call(func_name, args=None, prefix=None):
+    """A function call"""
+    node = Node(syms.power, [func_name, ArgList(args)])
+    if prefix is not None:
+        node.prefix = prefix
+    return node
+
+def Newline():
+    """A newline literal"""
+    return Leaf(token.NEWLINE, "\n")
+
+def BlankLine():
+    """A blank line"""
+    return Leaf(token.NEWLINE, "")
+
+def Number(n, prefix=None):
+    return Leaf(token.NUMBER, n, prefix=prefix)
+
+def Subscript(index_node):
+    """A numeric or string subscript"""
+    return Node(syms.trailer, [Leaf(token.LBRACE, "["),
+                               index_node,
+                               Leaf(token.RBRACE, "]")])
+
+def String(string, prefix=None):
+    """A string leaf"""
+    return Leaf(token.STRING, string, prefix=prefix)
+
+def ListComp(xp, fp, it, test=None):
+    """A list comprehension of the form [xp for fp in it if test].
+
+    If test is None, the "if test" part is omitted.
+    """
+    xp.prefix = ""
+    fp.prefix = " "
+    it.prefix = " "
+    for_leaf = Leaf(token.NAME, "for")
+    for_leaf.prefix = " "
+    in_leaf = Leaf(token.NAME, "in")
+    in_leaf.prefix = " "
+    inner_args = [for_leaf, fp, in_leaf, it]
+    if test:
+        test.prefix = " "
+        if_leaf = Leaf(token.NAME, "if")
+        if_leaf.prefix = " "
+        inner_args.append(Node(syms.comp_if, [if_leaf, test]))
+    inner = Node(syms.listmaker, [xp, Node(syms.comp_for, inner_args)])
+    return Node(syms.atom,
+                       [Leaf(token.LBRACE, "["),
+                        inner,
+                        Leaf(token.RBRACE, "]")])
+
+def FromImport(package_name, name_leafs):
+    """ Return an import statement in the form:
+        from package import name_leafs"""
+    # XXX: May not handle dotted imports properly (eg, package_name='foo.bar')
+    #assert package_name == '.' or '.' not in package_name, "FromImport has "\
+    #       "not been tested with dotted package names -- use at your own "\
+    #       "peril!"
+
+    for leaf in name_leafs:
+        # Pull the leaves out of their old tree
+        leaf.remove()
+
+    children = [Leaf(token.NAME, "from"),
+                Leaf(token.NAME, package_name, prefix=" "),
+                Leaf(token.NAME, "import", prefix=" "),
+                Node(syms.import_as_names, name_leafs)]
+    imp = Node(syms.import_from, children)
+    return imp
+
+def ImportAndCall(node, results, names):
+    """Returns an import statement and calls a method
+    of the module:
+
+    import module
+    module.name()"""
+    obj = results["obj"].clone()
+    if obj.type == syms.arglist:
+        newarglist = obj.clone()
+    else:
+        newarglist = Node(syms.arglist, [obj.clone()])
+    after = results["after"]
+    if after:
+        after = [n.clone() for n in after]
+    new = Node(syms.power,
+               Attr(Name(names[0]), Name(names[1])) +
+               [Node(syms.trailer,
+                     [results["lpar"].clone(),
+                      newarglist,
+                      results["rpar"].clone()])] + after)
+    new.prefix = node.prefix
+    return new
+
+
+###########################################################
+### Determine whether a node represents a given literal
+###########################################################
+
+def is_tuple(node):
+    """Does the node represent a tuple literal?"""
+    if isinstance(node, Node) and node.children == [LParen(), RParen()]:
+        return True
+    return (isinstance(node, Node)
+            and len(node.children) == 3
+            and isinstance(node.children[0], Leaf)
+            and isinstance(node.children[1], Node)
+            and isinstance(node.children[2], Leaf)
+            and node.children[0].value == "("
+            and node.children[2].value == ")")
+
+def is_list(node):
+    """Does the node represent a list literal?"""
+    return (isinstance(node, Node)
+            and len(node.children) > 1
+            and isinstance(node.children[0], Leaf)
+            and isinstance(node.children[-1], Leaf)
+            and node.children[0].value == "["
+            and node.children[-1].value == "]")
+
+
+###########################################################
+### Misc
+###########################################################
+
+def parenthesize(node):
+    return Node(syms.atom, [LParen(), node, RParen()])
+
+
+consuming_calls = {"sorted", "list", "set", "any", "all", "tuple", "sum",
+                   "min", "max", "enumerate"}
+
+def attr_chain(obj, attr):
+    """Follow an attribute chain.
+
+    If you have a chain of objects where a.foo -> b, b.foo-> c, etc,
+    use this to iterate over all objects in the chain. Iteration is
+    terminated by getattr(x, attr) is None.
+
+    Args:
+        obj: the starting object
+        attr: the name of the chaining attribute
+
+    Yields:
+        Each successive object in the chain.
+    """
+    next = getattr(obj, attr)
+    while next:
+        yield next
+        next = getattr(next, attr)
+
+p0 = """for_stmt< 'for' any 'in' node=any ':' any* >
+        | comp_for< 'for' any 'in' node=any any* >
+     """
+p1 = """
+power<
+    ( 'iter' | 'list' | 'tuple' | 'sorted' | 'set' | 'sum' |
+      'any' | 'all' | 'enumerate' | (any* trailer< '.' 'join' >) )
+    trailer< '(' node=any ')' >
+    any*
+>
+"""
+p2 = """
+power<
+    ( 'sorted' | 'enumerate' )
+    trailer< '(' arglist<node=any any*> ')' >
+    any*
+>
+"""
+pats_built = False
+def in_special_context(node):
+    """ Returns true if node is in an environment where all that is required
+        of it is being iterable (ie, it doesn't matter if it returns a list
+        or an iterator).
+        See test_map_nochange in test_fixers.py for some examples and tests.
+        """
+    global p0, p1, p2, pats_built
+    if not pats_built:
+        p0 = patcomp.compile_pattern(p0)
+        p1 = patcomp.compile_pattern(p1)
+        p2 = patcomp.compile_pattern(p2)
+        pats_built = True
+    patterns = [p0, p1, p2]
+    for pattern, parent in zip(patterns, attr_chain(node, "parent")):
+        results = {}
+        if pattern.match(parent, results) and results["node"] is node:
+            return True
+    return False
+
+def is_probably_builtin(node):
+    """
+    Check that something isn't an attribute or function name etc.
+    """
+    prev = node.prev_sibling
+    if prev is not None and prev.type == token.DOT:
+        # Attribute lookup.
+        return False
+    parent = node.parent
+    if parent.type in (syms.funcdef, syms.classdef):
+        return False
+    if parent.type == syms.expr_stmt and parent.children[0] is node:
+        # Assignment.
+        return False
+    if parent.type == syms.parameters or \
+            (parent.type == syms.typedargslist and (
+            (prev is not None and prev.type == token.COMMA) or
+            parent.children[0] is node
+            )):
+        # The name of an argument.
+        return False
+    return True
+
+def find_indentation(node):
+    """Find the indentation of *node*."""
+    while node is not None:
+        if node.type == syms.suite and len(node.children) > 2:
+            indent = node.children[1]
+            if indent.type == token.INDENT:
+                return indent.value
+        node = node.parent
+    return ""
+
+###########################################################
+### The following functions are to find bindings in a suite
+###########################################################
+
+def make_suite(node):
+    if node.type == syms.suite:
+        return node
+    node = node.clone()
+    parent, node.parent = node.parent, None
+    suite = Node(syms.suite, [node])
+    suite.parent = parent
+    return suite
+
+def find_root(node):
+    """Find the top level namespace."""
+    # Scamper up to the top level namespace
+    while node.type != syms.file_input:
+        node = node.parent
+        if not node:
+            raise ValueError("root found before file_input node was found.")
+    return node
+
+def does_tree_import(package, name, node):
+    """ Returns true if name is imported from package at the
+        top level of the tree which node belongs to.
+        To cover the case of an import like 'import foo', use
+        None for the package and 'foo' for the name. """
+    binding = find_binding(name, find_root(node), package)
+    return bool(binding)
+
+def is_import(node):
+    """Returns true if the node is an import statement."""
+    return node.type in (syms.import_name, syms.import_from)
+
+def touch_import(package, name, node):
+    """ Works like `does_tree_import` but adds an import statement
+        if it was not imported. """
+    def is_import_stmt(node):
+        return (node.type == syms.simple_stmt and node.children and
+                is_import(node.children[0]))
+
+    root = find_root(node)
+
+    if does_tree_import(package, name, root):
+        return
+
+    # figure out where to insert the new import.  First try to find
+    # the first import and then skip to the last one.
+    insert_pos = offset = 0
+    for idx, node in enumerate(root.children):
+        if not is_import_stmt(node):
+            continue
+        for offset, node2 in enumerate(root.children[idx:]):
+            if not is_import_stmt(node2):
+                break
+        insert_pos = idx + offset
+        break
+
+    # if there are no imports where we can insert, find the docstring.
+    # if that also fails, we stick to the beginning of the file
+    if insert_pos == 0:
+        for idx, node in enumerate(root.children):
+            if (node.type == syms.simple_stmt and node.children and
+               node.children[0].type == token.STRING):
+                insert_pos = idx + 1
+                break
+
+    if package is None:
+        import_ = Node(syms.import_name, [
+            Leaf(token.NAME, "import"),
+            Leaf(token.NAME, name, prefix=" ")
+        ])
+    else:
+        import_ = FromImport(package, [Leaf(token.NAME, name, prefix=" ")])
+
+    children = [import_, Newline()]
+    root.insert_child(insert_pos, Node(syms.simple_stmt, children))
+
+
+_def_syms = {syms.classdef, syms.funcdef}
+def find_binding(name, node, package=None):
+    """ Returns the node which binds variable name, otherwise None.
+        If optional argument package is supplied, only imports will
+        be returned.
+        See test cases for examples."""
+    for child in node.children:
+        ret = None
+        if child.type == syms.for_stmt:
+            if _find(name, child.children[1]):
+                return child
+            n = find_binding(name, make_suite(child.children[-1]), package)
+            if n: ret = n
+        elif child.type in (syms.if_stmt, syms.while_stmt):
+            n = find_binding(name, make_suite(child.children[-1]), package)
+            if n: ret = n
+        elif child.type == syms.try_stmt:
+            n = find_binding(name, make_suite(child.children[2]), package)
+            if n:
+                ret = n
+            else:
+                for i, kid in enumerate(child.children[3:]):
+                    if kid.type == token.COLON and kid.value == ":":
+                        # i+3 is the colon, i+4 is the suite
+                        n = find_binding(name, make_suite(child.children[i+4]), package)
+                        if n: ret = n
+        elif child.type in _def_syms and child.children[1].value == name:
+            ret = child
+        elif _is_import_binding(child, name, package):
+            ret = child
+        elif child.type == syms.simple_stmt:
+            ret = find_binding(name, child, package)
+        elif child.type == syms.expr_stmt:
+            if _find(name, child.children[0]):
+                ret = child
+
+        if ret:
+            if not package:
+                return ret
+            if is_import(ret):
+                return ret
+    return None
+
+_block_syms = {syms.funcdef, syms.classdef, syms.trailer}
+def _find(name, node):
+    nodes = [node]
+    while nodes:
+        node = nodes.pop()
+        if node.type > 256 and node.type not in _block_syms:
+            nodes.extend(node.children)
+        elif node.type == token.NAME and node.value == name:
+            return node
+    return None
+
+def _is_import_binding(node, name, package=None):
+    """ Will return node if node will import name, or node
+        will import * from package.  None is returned otherwise.
+        See test cases for examples. """
+
+    if node.type == syms.import_name and not package:
+        imp = node.children[1]
+        if imp.type == syms.dotted_as_names:
+            for child in imp.children:
+                if child.type == syms.dotted_as_name:
+                    if child.children[2].value == name:
+                        return node
+                elif child.type == token.NAME and child.value == name:
+                    return node
+        elif imp.type == syms.dotted_as_name:
+            last = imp.children[-1]
+            if last.type == token.NAME and last.value == name:
+                return node
+        elif imp.type == token.NAME and imp.value == name:
+            return node
+    elif node.type == syms.import_from:
+        # str(...) is used to make life easier here, because
+        # from a.b import parses to ['import', ['a', '.', 'b'], ...]
+        if package and str(node.children[1]).strip() != package:
+            return None
+        n = node.children[3]
+        if package and _find("as", n):
+            # See test_from_import_as for explanation
+            return None
+        elif n.type == syms.import_as_names and _find(name, n):
+            return node
+        elif n.type == syms.import_as_name:
+            child = n.children[2]
+            if child.type == token.NAME and child.value == name:
+                return node
+        elif n.type == token.NAME and n.value == name:
+            return node
+        elif package and n.type == token.STAR:
+            return node
+    return None

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_basestring.py

@@ -0,0 +1,14 @@
+"""Fixer for basestring -> str."""
+# Author: Christian Heimes
+
+# Local imports
+from .. import fixer_base
+from ..fixer_util import Name
+
+class FixBasestring(fixer_base.BaseFix):
+    BM_compatible = True
+
+    PATTERN = "'basestring'"
+
+    def transform(self, node, results):
+        return Name("str", prefix=node.prefix)

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_buffer.py

@@ -0,0 +1,22 @@
+# Copyright 2007 Google, Inc. All Rights Reserved.
+# Licensed to PSF under a Contributor Agreement.
+
+"""Fixer that changes buffer(...) into memoryview(...)."""
+
+# Local imports
+from .. import fixer_base
+from ..fixer_util import Name
+
+
+class FixBuffer(fixer_base.BaseFix):
+    BM_compatible = True
+
+    explicit = True # The user must ask for this fixer
+
+    PATTERN = """
+              power< name='buffer' trailer< '(' [any] ')' > any* >
+              """
+
+    def transform(self, node, results):
+        name = results["name"]
+        name.replace(Name("memoryview", prefix=name.prefix))

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_dict.py

@@ -0,0 +1,106 @@
+# Copyright 2007 Google, Inc. All Rights Reserved.
+# Licensed to PSF under a Contributor Agreement.
+
+"""Fixer for dict methods.
+
+d.keys() -> list(d.keys())
+d.items() -> list(d.items())
+d.values() -> list(d.values())
+
+d.iterkeys() -> iter(d.keys())
+d.iteritems() -> iter(d.items())
+d.itervalues() -> iter(d.values())
+
+d.viewkeys() -> d.keys()
+d.viewitems() -> d.items()
+d.viewvalues() -> d.values()
+
+Except in certain very specific contexts: the iter() can be dropped
+when the context is list(), sorted(), iter() or for...in; the list()
+can be dropped when the context is list() or sorted() (but not iter()
+or for...in!). Special contexts that apply to both: list(), sorted(), tuple()
+set(), any(), all(), sum().
+
+Note: iter(d.keys()) could be written as iter(d) but since the
+original d.iterkeys() was also redundant we don't fix this.  And there
+are (rare) contexts where it makes a difference (e.g. when passing it
+as an argument to a function that introspects the argument).
+"""
+
+# Local imports
+from .. import pytree
+from .. import patcomp
+from .. import fixer_base
+from ..fixer_util import Name, Call, Dot
+from .. import fixer_util
+
+
+iter_exempt = fixer_util.consuming_calls | {"iter"}
+
+
+class FixDict(fixer_base.BaseFix):
+    BM_compatible = True
+
+    PATTERN = """
+    power< head=any+
+         trailer< '.' method=('keys'|'items'|'values'|
+                              'iterkeys'|'iteritems'|'itervalues'|
+                              'viewkeys'|'viewitems'|'viewvalues') >
+         parens=trailer< '(' ')' >
+         tail=any*
+    >
+    """
+
+    def transform(self, node, results):
+        head = results["head"]
+        method = results["method"][0] # Extract node for method name
+        tail = results["tail"]
+        syms = self.syms
+        method_name = method.value
+        isiter = method_name.startswith("iter")
+        isview = method_name.startswith("view")
+        if isiter or isview:
+            method_name = method_name[4:]
+        assert method_name in ("keys", "items", "values"), repr(method)
+        head = [n.clone() for n in head]
+        tail = [n.clone() for n in tail]
+        special = not tail and self.in_special_context(node, isiter)
+        args = head + [pytree.Node(syms.trailer,
+                                   [Dot(),
+                                    Name(method_name,
+                                         prefix=method.prefix)]),
+                       results["parens"].clone()]
+        new = pytree.Node(syms.power, args)
+        if not (special or isview):
+            new.prefix = ""
+            new = Call(Name("iter" if isiter else "list"), [new])
+        if tail:
+            new = pytree.Node(syms.power, [new] + tail)
+        new.prefix = node.prefix
+        return new
+
+    P1 = "power< func=NAME trailer< '(' node=any ')' > any* >"
+    p1 = patcomp.compile_pattern(P1)
+
+    P2 = """for_stmt< 'for' any 'in' node=any ':' any* >
+            | comp_for< 'for' any 'in' node=any any* >
+         """
+    p2 = patcomp.compile_pattern(P2)
+
+    def in_special_context(self, node, isiter):
+        if node.parent is None:
+            return False
+        results = {}
+        if (node.parent.parent is not None and
+               self.p1.match(node.parent.parent, results) and
+               results["node"] is node):
+            if isiter:
+                # iter(d.iterkeys()) -> iter(d.keys()), etc.
+                return results["func"].value in iter_exempt
+            else:
+                # list(d.keys()) -> list(d.keys()), etc.
+                return results["func"].value in fixer_util.consuming_calls
+        if not isiter:
+            return False
+        # for ... in d.iterkeys() -> for ... in d.keys(), etc.
+        return self.p2.match(node.parent, results) and results["node"] is node

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_execfile.py

@@ -0,0 +1,53 @@
+# Copyright 2006 Google, Inc. All Rights Reserved.
+# Licensed to PSF under a Contributor Agreement.
+
+"""Fixer for execfile.
+
+This converts usages of the execfile function into calls to the built-in
+exec() function.
+"""
+
+from .. import fixer_base
+from ..fixer_util import (Comma, Name, Call, LParen, RParen, Dot, Node,
+                          ArgList, String, syms)
+
+
+class FixExecfile(fixer_base.BaseFix):
+    BM_compatible = True
+
+    PATTERN = """
+    power< 'execfile' trailer< '(' arglist< filename=any [',' globals=any [',' locals=any ] ] > ')' > >
+    |
+    power< 'execfile' trailer< '(' filename=any ')' > >
+    """
+
+    def transform(self, node, results):
+        assert results
+        filename = results["filename"]
+        globals = results.get("globals")
+        locals = results.get("locals")
+
+        # Copy over the prefix from the right parentheses end of the execfile
+        # call.
+        execfile_paren = node.children[-1].children[-1].clone()
+        # Construct open().read().
+        open_args = ArgList([filename.clone(), Comma(), String('"rb"', ' ')],
+                            rparen=execfile_paren)
+        open_call = Node(syms.power, [Name("open"), open_args])
+        read = [Node(syms.trailer, [Dot(), Name('read')]),
+                Node(syms.trailer, [LParen(), RParen()])]
+        open_expr = [open_call] + read
+        # Wrap the open call in a compile call. This is so the filename will be
+        # preserved in the execed code.
+        filename_arg = filename.clone()
+        filename_arg.prefix = " "
+        exec_str = String("'exec'", " ")
+        compile_args = open_expr + [Comma(), filename_arg, Comma(), exec_str]
+        compile_call = Call(Name("compile"), compile_args, "")
+        # Finally, replace the execfile call with an exec call.
+        args = [compile_call]
+        if globals is not None:
+            args.extend([Comma(), globals.clone()])
+        if locals is not None:
+            args.extend([Comma(), locals.clone()])
+        return Call(Name("exec"), args, prefix=node.prefix)

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_filter.py

@@ -0,0 +1,94 @@
+# Copyright 2007 Google, Inc. All Rights Reserved.
+# Licensed to PSF under a Contributor Agreement.
+
+"""Fixer that changes filter(F, X) into list(filter(F, X)).
+
+We avoid the transformation if the filter() call is directly contained
+in iter(<>), list(<>), tuple(<>), sorted(<>), ...join(<>), or
+for V in <>:.
+
+NOTE: This is still not correct if the original code was depending on
+filter(F, X) to return a string if X is a string and a tuple if X is a
+tuple.  That would require type inference, which we don't do.  Let
+Python 2.6 figure it out.
+"""
+
+# Local imports
+from .. import fixer_base
+from ..pytree import Node
+from ..pygram import python_symbols as syms
+from ..fixer_util import Name, ArgList, ListComp, in_special_context, parenthesize
+
+
+class FixFilter(fixer_base.ConditionalFix):
+    BM_compatible = True
+
+    PATTERN = """
+    filter_lambda=power<
+        'filter'
+        trailer<
+            '('
+            arglist<
+                lambdef< 'lambda'
+                         (fp=NAME | vfpdef< '(' fp=NAME ')'> ) ':' xp=any
+                >
+                ','
+                it=any
+            >
+            ')'
+        >
+        [extra_trailers=trailer*]
+    >
+    |
+    power<
+        'filter'
+        trailer< '(' arglist< none='None' ',' seq=any > ')' >
+        [extra_trailers=trailer*]
+    >
+    |
+    power<
+        'filter'
+        args=trailer< '(' [any] ')' >
+        [extra_trailers=trailer*]
+    >
+    """
+
+    skip_on = "future_builtins.filter"
+
+    def transform(self, node, results):
+        if self.should_skip(node):
+            return
+
+        trailers = []
+        if 'extra_trailers' in results:
+            for t in results['extra_trailers']:
+                trailers.append(t.clone())
+
+        if "filter_lambda" in results:
+            xp = results.get("xp").clone()
+            if xp.type == syms.test:
+                xp.prefix = ""
+                xp = parenthesize(xp)
+
+            new = ListComp(results.get("fp").clone(),
+                           results.get("fp").clone(),
+                           results.get("it").clone(), xp)
+            new = Node(syms.power, [new] + trailers, prefix="")
+
+        elif "none" in results:
+            new = ListComp(Name("_f"),
+                           Name("_f"),
+                           results["seq"].clone(),
+                           Name("_f"))
+            new = Node(syms.power, [new] + trailers, prefix="")
+
+        else:
+            if in_special_context(node):
+                return None
+
+            args = results['args'].clone()
+            new = Node(syms.power, [Name("filter"), args], prefix="")
+            new = Node(syms.power, [Name("list"), ArgList([new])] + trailers)
+            new.prefix = ""
+        new.prefix = node.prefix
+        return new

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_getcwdu.py

@@ -0,0 +1,19 @@
+"""
+Fixer that changes os.getcwdu() to os.getcwd().
+"""
+# Author: Victor Stinner
+
+# Local imports
+from .. import fixer_base
+from ..fixer_util import Name
+
+class FixGetcwdu(fixer_base.BaseFix):
+    BM_compatible = True
+
+    PATTERN = """
+              power< 'os' trailer< dot='.' name='getcwdu' > any* >
+              """
+
+    def transform(self, node, results):
+        name = results["name"]
+        name.replace(Name("getcwd", prefix=name.prefix))

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_idioms.py

@@ -0,0 +1,152 @@
+"""Adjust some old Python 2 idioms to their modern counterparts.
+
+* Change some type comparisons to isinstance() calls:
+    type(x) == T -> isinstance(x, T)
+    type(x) is T -> isinstance(x, T)
+    type(x) != T -> not isinstance(x, T)
+    type(x) is not T -> not isinstance(x, T)
+
+* Change "while 1:" into "while True:".
+
+* Change both
+
+    v = list(EXPR)
+    v.sort()
+    foo(v)
+
+and the more general
+
+    v = EXPR
+    v.sort()
+    foo(v)
+
+into
+
+    v = sorted(EXPR)
+    foo(v)
+"""
+# Author: Jacques Frechet, Collin Winter
+
+# Local imports
+from .. import fixer_base
+from ..fixer_util import Call, Comma, Name, Node, BlankLine, syms
+
+CMP = "(n='!=' | '==' | 'is' | n=comp_op< 'is' 'not' >)"
+TYPE = "power< 'type' trailer< '(' x=any ')' > >"
+
+class FixIdioms(fixer_base.BaseFix):
+    explicit = True # The user must ask for this fixer
+
+    PATTERN = r"""
+        isinstance=comparison< %s %s T=any >
+        |
+        isinstance=comparison< T=any %s %s >
+        |
+        while_stmt< 'while' while='1' ':' any+ >
+        |
+        sorted=any<
+            any*
+            simple_stmt<
+              expr_stmt< id1=any '='
+                         power< list='list' trailer< '(' (not arglist<any+>) any ')' > >
+              >
+              '\n'
+            >
+            sort=
+            simple_stmt<
+              power< id2=any
+                     trailer< '.' 'sort' > trailer< '(' ')' >
+              >
+              '\n'
+            >
+            next=any*
+        >
+        |
+        sorted=any<
+            any*
+            simple_stmt< expr_stmt< id1=any '=' expr=any > '\n' >
+            sort=
+            simple_stmt<
+              power< id2=any
+                     trailer< '.' 'sort' > trailer< '(' ')' >
+              >
+              '\n'
+            >
+            next=any*
+        >
+    """ % (TYPE, CMP, CMP, TYPE)
+
+    def match(self, node):
+        r = super(FixIdioms, self).match(node)
+        # If we've matched one of the sort/sorted subpatterns above, we
+        # want to reject matches where the initial assignment and the
+        # subsequent .sort() call involve different identifiers.
+        if r and "sorted" in r:
+            if r["id1"] == r["id2"]:
+                return r
+            return None
+        return r
+
+    def transform(self, node, results):
+        if "isinstance" in results:
+            return self.transform_isinstance(node, results)
+        elif "while" in results:
+            return self.transform_while(node, results)
+        elif "sorted" in results:
+            return self.transform_sort(node, results)
+        else:
+            raise RuntimeError("Invalid match")
+
+    def transform_isinstance(self, node, results):
+        x = results["x"].clone() # The thing inside of type()
+        T = results["T"].clone() # The type being compared against
+        x.prefix = ""
+        T.prefix = " "
+        test = Call(Name("isinstance"), [x, Comma(), T])
+        if "n" in results:
+            test.prefix = " "
+            test = Node(syms.not_test, [Name("not"), test])
+        test.prefix = node.prefix
+        return test
+
+    def transform_while(self, node, results):
+        one = results["while"]
+        one.replace(Name("True", prefix=one.prefix))
+
+    def transform_sort(self, node, results):
+        sort_stmt = results["sort"]
+        next_stmt = results["next"]
+        list_call = results.get("list")
+        simple_expr = results.get("expr")
+
+        if list_call:
+            list_call.replace(Name("sorted", prefix=list_call.prefix))
+        elif simple_expr:
+            new = simple_expr.clone()
+            new.prefix = ""
+            simple_expr.replace(Call(Name("sorted"), [new],
+                                     prefix=simple_expr.prefix))
+        else:
+            raise RuntimeError("should not have reached here")
+        sort_stmt.remove()
+
+        btwn = sort_stmt.prefix
+        # Keep any prefix lines between the sort_stmt and the list_call and
+        # shove them right after the sorted() call.
+        if "\n" in btwn:
+            if next_stmt:
+                # The new prefix should be everything from the sort_stmt's
+                # prefix up to the last newline, then the old prefix after a new
+                # line.
+                prefix_lines = (btwn.rpartition("\n")[0], next_stmt[0].prefix)
+                next_stmt[0].prefix = "\n".join(prefix_lines)
+            else:
+                assert list_call.parent
+                assert list_call.next_sibling is None
+                # Put a blank line after list_call and set its prefix.
+                end_line = BlankLine()
+                list_call.parent.append_child(end_line)
+                assert list_call.next_sibling is end_line
+                # The new prefix should be everything up to the first new line
+                # of sort_stmt's prefix.
+                end_line.prefix = btwn.rpartition("\n")[0]

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_imports.py

@@ -0,0 +1,145 @@
+"""Fix incompatible imports and module references."""
+# Authors: Collin Winter, Nick Edds
+
+# Local imports
+from .. import fixer_base
+from ..fixer_util import Name, attr_chain
+
+MAPPING = {'StringIO':  'io',
+           'cStringIO': 'io',
+           'cPickle': 'pickle',
+           '__builtin__' : 'builtins',
+           'copy_reg': 'copyreg',
+           'Queue': 'queue',
+           'SocketServer': 'socketserver',
+           'ConfigParser': 'configparser',
+           'repr': 'reprlib',
+           'FileDialog': 'tkinter.filedialog',
+           'tkFileDialog': 'tkinter.filedialog',
+           'SimpleDialog': 'tkinter.simpledialog',
+           'tkSimpleDialog': 'tkinter.simpledialog',
+           'tkColorChooser': 'tkinter.colorchooser',
+           'tkCommonDialog': 'tkinter.commondialog',
+           'Dialog': 'tkinter.dialog',
+           'Tkdnd': 'tkinter.dnd',
+           'tkFont': 'tkinter.font',
+           'tkMessageBox': 'tkinter.messagebox',
+           'ScrolledText': 'tkinter.scrolledtext',
+           'Tkconstants': 'tkinter.constants',
+           'Tix': 'tkinter.tix',
+           'ttk': 'tkinter.ttk',
+           'Tkinter': 'tkinter',
+           'markupbase': '_markupbase',
+           '_winreg': 'winreg',
+           'thread': '_thread',
+           'dummy_thread': '_dummy_thread',
+           # anydbm and whichdb are handled by fix_imports2
+           'dbhash': 'dbm.bsd',
+           'dumbdbm': 'dbm.dumb',
+           'dbm': 'dbm.ndbm',
+           'gdbm': 'dbm.gnu',
+           'xmlrpclib': 'xmlrpc.client',
+           'DocXMLRPCServer': 'xmlrpc.server',
+           'SimpleXMLRPCServer': 'xmlrpc.server',
+           'httplib': 'http.client',
+           'htmlentitydefs' : 'html.entities',
+           'HTMLParser' : 'html.parser',
+           'Cookie': 'http.cookies',
+           'cookielib': 'http.cookiejar',
+           'BaseHTTPServer': 'http.server',
+           'SimpleHTTPServer': 'http.server',
+           'CGIHTTPServer': 'http.server',
+           #'test.test_support': 'test.support',
+           'commands': 'subprocess',
+           'UserString' : 'collections',
+           'UserList' : 'collections',
+           'urlparse' : 'urllib.parse',
+           'robotparser' : 'urllib.robotparser',
+}
+
+
+def alternates(members):
+    return "(" + "|".join(map(repr, members)) + ")"
+
+
+def build_pattern(mapping=MAPPING):
+    mod_list = ' | '.join(["module_name='%s'" % key for key in mapping])
+    bare_names = alternates(mapping.keys())
+
+    yield """name_import=import_name< 'import' ((%s) |
+               multiple_imports=dotted_as_names< any* (%s) any* >) >
+          """ % (mod_list, mod_list)
+    yield """import_from< 'from' (%s) 'import' ['(']
+              ( any | import_as_name< any 'as' any > |
+                import_as_names< any* >)  [')'] >
+          """ % mod_list
+    yield """import_name< 'import' (dotted_as_name< (%s) 'as' any > |
+               multiple_imports=dotted_as_names<
+                 any* dotted_as_name< (%s) 'as' any > any* >) >
+          """ % (mod_list, mod_list)
+
+    # Find usages of module members in code e.g. thread.foo(bar)
+    yield "power< bare_with_attr=(%s) trailer<'.' any > any* >" % bare_names
+
+
+class FixImports(fixer_base.BaseFix):
+
+    BM_compatible = True
+    keep_line_order = True
+    # This is overridden in fix_imports2.
+    mapping = MAPPING
+
+    # We want to run this fixer late, so fix_import doesn't try to make stdlib
+    # renames into relative imports.
+    run_order = 6
+
+    def build_pattern(self):
+        return "|".join(build_pattern(self.mapping))
+
+    def compile_pattern(self):
+        # We override this, so MAPPING can be pragmatically altered and the
+        # changes will be reflected in PATTERN.
+        self.PATTERN = self.build_pattern()
+        super(FixImports, self).compile_pattern()
+
+    # Don't match the node if it's within another match.
+    def match(self, node):
+        match = super(FixImports, self).match
+        results = match(node)
+        if results:
+            # Module usage could be in the trailer of an attribute lookup, so we
+            # might have nested matches when "bare_with_attr" is present.
+            if "bare_with_attr" not in results and \
+                    any(match(obj) for obj in attr_chain(node, "parent")):
+                return False
+            return results
+        return False
+
+    def start_tree(self, tree, filename):
+        super(FixImports, self).start_tree(tree, filename)
+        self.replace = {}
+
+    def transform(self, node, results):
+        import_mod = results.get("module_name")
+        if import_mod:
+            mod_name = import_mod.value
+            new_name = self.mapping[mod_name]
+            import_mod.replace(Name(new_name, prefix=import_mod.prefix))
+            if "name_import" in results:
+                # If it's not a "from x import x, y" or "import x as y" import,
+                # marked its usage to be replaced.
+                self.replace[mod_name] = new_name
+            if "multiple_imports" in results:
+                # This is a nasty hack to fix multiple imports on a line (e.g.,
+                # "import StringIO, urlparse"). The problem is that I can't
+                # figure out an easy way to make a pattern recognize the keys of
+                # MAPPING randomly sprinkled in an import statement.
+                results = self.match(node)
+                if results:
+                    self.transform(node, results)
+        else:
+            # Replace usage of the module.
+            bare_name = results["bare_with_attr"][0]
+            new_name = self.replace.get(bare_name.value)
+            if new_name:
+                bare_name.replace(Name(new_name, prefix=bare_name.prefix))

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_intern.py

@@ -0,0 +1,39 @@
+# Copyright 2006 Georg Brandl.
+# Licensed to PSF under a Contributor Agreement.
+
+"""Fixer for intern().
+
+intern(s) -> sys.intern(s)"""
+
+# Local imports
+from .. import fixer_base
+from ..fixer_util import ImportAndCall, touch_import
+
+
+class FixIntern(fixer_base.BaseFix):
+    BM_compatible = True
+    order = "pre"
+
+    PATTERN = """
+    power< 'intern'
+           trailer< lpar='('
+                    ( not(arglist | argument<any '=' any>) obj=any
+                      | obj=arglist<(not argument<any '=' any>) any ','> )
+                    rpar=')' >
+           after=any*
+    >
+    """
+
+    def transform(self, node, results):
+        if results:
+            # I feel like we should be able to express this logic in the
+            # PATTERN above but I don't know how to do it so...
+            obj = results['obj']
+            if obj:
+                if (obj.type == self.syms.argument and
+                    obj.children[0].value in {'**', '*'}):
+                    return  # Make no change.
+        names = ('sys', 'intern')
+        new = ImportAndCall(node, results, names)
+        touch_import(None, 'sys', node)
+        return new

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_itertools.py

@@ -0,0 +1,43 @@
+""" Fixer for itertools.(imap|ifilter|izip) --> (map|filter|zip) and
+    itertools.ifilterfalse --> itertools.filterfalse (bugs 2360-2363)
+
+    imports from itertools are fixed in fix_itertools_import.py
+
+    If itertools is imported as something else (ie: import itertools as it;
+    it.izip(spam, eggs)) method calls will not get fixed.
+    """
+
+# Local imports
+from .. import fixer_base
+from ..fixer_util import Name
+
+class FixItertools(fixer_base.BaseFix):
+    BM_compatible = True
+    it_funcs = "('imap'|'ifilter'|'izip'|'izip_longest'|'ifilterfalse')"
+    PATTERN = """
+              power< it='itertools'
+                  trailer<
+                     dot='.' func=%(it_funcs)s > trailer< '(' [any] ')' > >
+              |
+              power< func=%(it_funcs)s trailer< '(' [any] ')' > >
+              """ %(locals())
+
+    # Needs to be run after fix_(map|zip|filter)
+    run_order = 6
+
+    def transform(self, node, results):
+        prefix = None
+        func = results['func'][0]
+        if ('it' in results and
+            func.value not in ('ifilterfalse', 'izip_longest')):
+            dot, it = (results['dot'], results['it'])
+            # Remove the 'itertools'
+            prefix = it.prefix
+            it.remove()
+            # Replace the node which contains ('.', 'function') with the
+            # function (to be consistent with the second part of the pattern)
+            dot.remove()
+            func.parent.replace(func)
+
+        prefix = prefix or func.prefix
+        func.replace(Name(func.value[1:], prefix=prefix))

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_itertools_imports.py

@@ -0,0 +1,57 @@
+""" Fixer for imports of itertools.(imap|ifilter|izip|ifilterfalse) """
+
+# Local imports
+from lib2to3 import fixer_base
+from lib2to3.fixer_util import BlankLine, syms, token
+
+
+class FixItertoolsImports(fixer_base.BaseFix):
+    BM_compatible = True
+    PATTERN = """
+              import_from< 'from' 'itertools' 'import' imports=any >
+              """ %(locals())
+
+    def transform(self, node, results):
+        imports = results['imports']
+        if imports.type == syms.import_as_name or not imports.children:
+            children = [imports]
+        else:
+            children = imports.children
+        for child in children[::2]:
+            if child.type == token.NAME:
+                member = child.value
+                name_node = child
+            elif child.type == token.STAR:
+                # Just leave the import as is.
+                return
+            else:
+                assert child.type == syms.import_as_name
+                name_node = child.children[0]
+            member_name = name_node.value
+            if member_name in ('imap', 'izip', 'ifilter'):
+                child.value = None
+                child.remove()
+            elif member_name in ('ifilterfalse', 'izip_longest'):
+                node.changed()
+                name_node.value = ('filterfalse' if member_name[1] == 'f'
+                                   else 'zip_longest')
+
+        # Make sure the import statement is still sane
+        children = imports.children[:] or [imports]
+        remove_comma = True
+        for child in children:
+            if remove_comma and child.type == token.COMMA:
+                child.remove()
+            else:
+                remove_comma ^= True
+
+        while children and children[-1].type == token.COMMA:
+            children.pop().remove()
+
+        # If there are no imports left, just get rid of the entire statement
+        if (not (imports.children or getattr(imports, 'value', None)) or
+            imports.parent is None):
+            p = node.prefix
+            node = BlankLine()
+            node.prefix = p
+            return node

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_map.py

@@ -0,0 +1,110 @@
+# Copyright 2007 Google, Inc. All Rights Reserved.
+# Licensed to PSF under a Contributor Agreement.
+
+"""Fixer that changes map(F, ...) into list(map(F, ...)) unless there
+exists a 'from future_builtins import map' statement in the top-level
+namespace.
+
+As a special case, map(None, X) is changed into list(X).  (This is
+necessary because the semantics are changed in this case -- the new
+map(None, X) is equivalent to [(x,) for x in X].)
+
+We avoid the transformation (except for the special case mentioned
+above) if the map() call is directly contained in iter(<>), list(<>),
+tuple(<>), sorted(<>), ...join(<>), or for V in <>:.
+
+NOTE: This is still not correct if the original code was depending on
+map(F, X, Y, ...) to go on until the longest argument is exhausted,
+substituting None for missing values -- like zip(), it now stops as
+soon as the shortest argument is exhausted.
+"""
+
+# Local imports
+from ..pgen2 import token
+from .. import fixer_base
+from ..fixer_util import Name, ArgList, Call, ListComp, in_special_context
+from ..pygram import python_symbols as syms
+from ..pytree import Node
+
+
+class FixMap(fixer_base.ConditionalFix):
+    BM_compatible = True
+
+    PATTERN = """
+    map_none=power<
+        'map'
+        trailer< '(' arglist< 'None' ',' arg=any [','] > ')' >
+        [extra_trailers=trailer*]
+    >
+    |
+    map_lambda=power<
+        'map'
+        trailer<
+            '('
+            arglist<
+                lambdef< 'lambda'
+                         (fp=NAME | vfpdef< '(' fp=NAME ')'> ) ':' xp=any
+                >
+                ','
+                it=any
+            >
+            ')'
+        >
+        [extra_trailers=trailer*]
+    >
+    |
+    power<
+        'map' args=trailer< '(' [any] ')' >
+        [extra_trailers=trailer*]
+    >
+    """
+
+    skip_on = 'future_builtins.map'
+
+    def transform(self, node, results):
+        if self.should_skip(node):
+            return
+
+        trailers = []
+        if 'extra_trailers' in results:
+            for t in results['extra_trailers']:
+                trailers.append(t.clone())
+
+        if node.parent.type == syms.simple_stmt:
+            self.warning(node, "You should use a for loop here")
+            new = node.clone()
+            new.prefix = ""
+            new = Call(Name("list"), [new])
+        elif "map_lambda" in results:
+            new = ListComp(results["xp"].clone(),
+                           results["fp"].clone(),
+                           results["it"].clone())
+            new = Node(syms.power, [new] + trailers, prefix="")
+
+        else:
+            if "map_none" in results:
+                new = results["arg"].clone()
+                new.prefix = ""
+            else:
+                if "args" in results:
+                    args = results["args"]
+                    if args.type == syms.trailer and \
+                       args.children[1].type == syms.arglist and \
+                       args.children[1].children[0].type == token.NAME and \
+                       args.children[1].children[0].value == "None":
+                        self.warning(node, "cannot convert map(None, ...) "
+                                     "with multiple arguments because map() "
+                                     "now truncates to the shortest sequence")
+                        return
+
+                    new = Node(syms.power, [Name("map"), args.clone()])
+                    new.prefix = ""
+
+                if in_special_context(node):
+                    return None
+
+            new = Node(syms.power, [Name("list"), ArgList([new])] + trailers)
+            new.prefix = ""
+
+        new.prefix = node.prefix
+        return new

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_ne.py

@@ -0,0 +1,23 @@
+# Copyright 2006 Google, Inc. All Rights Reserved.
+# Licensed to PSF under a Contributor Agreement.
+
+"""Fixer that turns <> into !=."""
+
+# Local imports
+from .. import pytree
+from ..pgen2 import token
+from .. import fixer_base
+
+
+class FixNe(fixer_base.BaseFix):
+    # This is so simple that we don't need the pattern compiler.
+
+    _accept_type = token.NOTEQUAL
+
+    def match(self, node):
+        # Override
+        return node.value == "<>"
+
+    def transform(self, node, results):
+        new = pytree.Leaf(token.NOTEQUAL, "!=", prefix=node.prefix)
+        return new

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_next.py

@@ -0,0 +1,103 @@
+"""Fixer for it.next() -> next(it), per PEP 3114."""
+# Author: Collin Winter
+
+# Things that currently aren't covered:
+#   - listcomp "next" names aren't warned
+#   - "with" statement targets aren't checked
+
+# Local imports
+from ..pgen2 import token
+from ..pygram import python_symbols as syms
+from .. import fixer_base
+from ..fixer_util import Name, Call, find_binding
+
+bind_warning = "Calls to builtin next() possibly shadowed by global binding"
+
+
+class FixNext(fixer_base.BaseFix):
+    BM_compatible = True
+    PATTERN = """
+    power< base=any+ trailer< '.' attr='next' > trailer< '(' ')' > >
+    |
+    power< head=any+ trailer< '.' attr='next' > not trailer< '(' ')' > >
+    |
+    classdef< 'class' any+ ':'
+              suite< any*
+                     funcdef< 'def'
+                              name='next'
+                              parameters< '(' NAME ')' > any+ >
+                     any* > >
+    |
+    global=global_stmt< 'global' any* 'next' any* >
+    """
+
+    order = "pre" # Pre-order tree traversal
+
+    def start_tree(self, tree, filename):
+        super(FixNext, self).start_tree(tree, filename)
+
+        n = find_binding('next', tree)
+        if n:
+            self.warning(n, bind_warning)
+            self.shadowed_next = True
+        else:
+            self.shadowed_next = False
+
+    def transform(self, node, results):
+        assert results
+
+        base = results.get("base")
+        attr = results.get("attr")
+        name = results.get("name")
+
+        if base:
+            if self.shadowed_next:
+                attr.replace(Name("__next__", prefix=attr.prefix))
+            else:
+                base = [n.clone() for n in base]
+                base[0].prefix = ""
+                node.replace(Call(Name("next", prefix=node.prefix), base))
+        elif name:
+            n = Name("__next__", prefix=name.prefix)
+            name.replace(n)
+        elif attr:
+            # We don't do this transformation if we're assigning to "x.next".
+            # Unfortunately, it doesn't seem possible to do this in PATTERN,
+            #  so it's being done here.
+            if is_assign_target(node):
+                head = results["head"]
+                if "".join([str(n) for n in head]).strip() == '__builtin__':
+                    self.warning(node, bind_warning)
+                return
+            attr.replace(Name("__next__"))
+        elif "global" in results:
+            self.warning(node, bind_warning)
+            self.shadowed_next = True
+
+
+### The following functions help test if node is part of an assignment
+###  target.
+
+def is_assign_target(node):
+    assign = find_assign(node)
+    if assign is None:
+        return False
+
+    for child in assign.children:
+        if child.type == token.EQUAL:
+            return False
+        elif is_subtree(child, node):
+            return True
+    return False
+
+def find_assign(node):
+    if node.type == syms.expr_stmt:
+        return node
+    if node.type == syms.simple_stmt or node.parent is None:
+        return None
+    return find_assign(node.parent)
+
+def is_subtree(root, node):
+    if root == node:
+        return True
+    return any(is_subtree(c, node) for c in root.children)

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_nonzero.py

@@ -0,0 +1,21 @@
+"""Fixer for __nonzero__ -> __bool__ methods."""
+# Author: Collin Winter
+
+# Local imports
+from .. import fixer_base
+from ..fixer_util import Name
+
+class FixNonzero(fixer_base.BaseFix):
+    BM_compatible = True
+    PATTERN = """
+    classdef< 'class' any+ ':'
+              suite< any*
+                     funcdef< 'def' name='__nonzero__'
+                              parameters< '(' NAME ')' > any+ >
+                     any* > >
+    """
+
+    def transform(self, node, results):
+        name = results["name"]
+        new = Name("__bool__", prefix=name.prefix)
+        name.replace(new)

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_numliterals.py

@@ -0,0 +1,28 @@
+"""Fixer that turns 1L into 1, 0755 into 0o755.
+"""
+# Copyright 2007 Georg Brandl.
+# Licensed to PSF under a Contributor Agreement.
+
+# Local imports
+from ..pgen2 import token
+from .. import fixer_base
+from ..fixer_util import Number
+
+
+class FixNumliterals(fixer_base.BaseFix):
+    # This is so simple that we don't need the pattern compiler.
+
+    _accept_type = token.NUMBER
+
+    def match(self, node):
+        # Override
+        return (node.value.startswith("0") or node.value[-1] in "Ll")
+
+    def transform(self, node, results):
+        val = node.value
+        if val[-1] in 'Ll':
+            val = val[:-1]
+        elif val.startswith('0') and val.isdigit() and len(set(val)) > 1:
+            val = "0o" + val[1:]
+
+        return Number(val, prefix=node.prefix)

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_reduce.py

@@ -0,0 +1,35 @@
+# Copyright 2008 Armin Ronacher.
+# Licensed to PSF under a Contributor Agreement.
+
+"""Fixer for reduce().
+
+Makes sure reduce() is imported from the functools module if reduce is
+used in that module.
+"""
+
+from lib2to3 import fixer_base
+from lib2to3.fixer_util import touch_import
+
+
+
+class FixReduce(fixer_base.BaseFix):
+
+    BM_compatible = True
+    order = "pre"
+
+    PATTERN = """
+    power< 'reduce'
+        trailer< '('
+            arglist< (
+                (not(argument<any '=' any>) any ','
+                 not(argument<any '=' any>) any) |
+                (not(argument<any '=' any>) any ','
+                 not(argument<any '=' any>) any ','
+                 not(argument<any '=' any>) any)
+            ) >
+        ')' >
+    >
+    """
+
+    def transform(self, node, results):
+        touch_import('functools', 'reduce', node)

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_reload.py

@@ -0,0 +1,36 @@
+"""Fixer for reload().
+
+reload(s) -> importlib.reload(s)"""
+
+# Local imports
+from .. import fixer_base
+from ..fixer_util import ImportAndCall, touch_import
+
+
+class FixReload(fixer_base.BaseFix):
+    BM_compatible = True
+    order = "pre"
+
+    PATTERN = """
+    power< 'reload'
+           trailer< lpar='('
+                    ( not(arglist | argument<any '=' any>) obj=any
+                      | obj=arglist<(not argument<any '=' any>) any ','> )
+                    rpar=')' >
+           after=any*
+    >
+    """
+
+    def transform(self, node, results):
+        if results:
+            # I feel like we should be able to express this logic in the
+            # PATTERN above but I don't know how to do it so...
+            obj = results['obj']
+            if obj:
+                if (obj.type == self.syms.argument and
+                    obj.children[0].value in {'**', '*'}):
+                    return  # Make no change.
+        names = ('importlib', 'reload')
+        new = ImportAndCall(node, results, names)
+        touch_import(None, 'importlib', node)
+        return new

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_renames.py

@@ -0,0 +1,70 @@
+"""Fix incompatible renames
+
+Fixes:
+  * sys.maxint -> sys.maxsize
+"""
+# Author: Christian Heimes
+# based on Collin Winter's fix_import
+
+# Local imports
+from .. import fixer_base
+from ..fixer_util import Name, attr_chain
+
+MAPPING = {"sys":  {"maxint" : "maxsize"},
+          }
+LOOKUP = {}
+
+def alternates(members):
+    return "(" + "|".join(map(repr, members)) + ")"
+
+
+def build_pattern():
+    #bare = set()
+    for module, replace in list(MAPPING.items()):
+        for old_attr, new_attr in list(replace.items()):
+            LOOKUP[(module, old_attr)] = new_attr
+            #bare.add(module)
+            #bare.add(old_attr)
+            #yield """
+            #      import_name< 'import' (module=%r
+            #          | dotted_as_names< any* module=%r any* >) >
+            #      """ % (module, module)
+            yield """
+                  import_from< 'from' module_name=%r 'import'
+                      ( attr_name=%r | import_as_name< attr_name=%r 'as' any >) >
+                  """ % (module, old_attr, old_attr)
+            yield """
+                  power< module_name=%r trailer< '.' attr_name=%r > any* >
+                  """ % (module, old_attr)
+    #yield """bare_name=%s""" % alternates(bare)
+
+
+class FixRenames(fixer_base.BaseFix):
+    BM_compatible = True
+    PATTERN = "|".join(build_pattern())
+
+    order = "pre" # Pre-order tree traversal
+
+    # Don't match the node if it's within another match
+    def match(self, node):
+        match = super(FixRenames, self).match
+        results = match(node)
+        if results:
+            if any(match(obj) for obj in attr_chain(node, "parent")):
+                return False
+            return results
+        return False
+
+    #def start_tree(self, tree, filename):
+    #    super(FixRenames, self).start_tree(tree, filename)
+    #    self.replace = {}
+
+    def transform(self, node, results):
+        mod_name = results.get("module_name")
+        attr_name = results.get("attr_name")
+        #bare_name = results.get("bare_name")
+        #import_mod = results.get("module")
+
+        if mod_name and attr_name:
+            new_attr = LOOKUP[(mod_name.value, attr_name.value)]
+            attr_name.replace(Name(new_attr, prefix=attr_name.prefix))

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_standarderror.py

@@ -0,0 +1,18 @@
+# Copyright 2007 Google, Inc. All Rights Reserved.
+# Licensed to PSF under a Contributor Agreement.
+
+"""Fixer for StandardError -> Exception."""
+
+# Local imports
+from .. import fixer_base
+from ..fixer_util import Name
+
+
+class FixStandarderror(fixer_base.BaseFix):
+    BM_compatible = True
+    PATTERN = """
+              'StandardError'
+              """
+
+    def transform(self, node, results):
+        return Name("Exception", prefix=node.prefix)

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_types.py

@@ -0,0 +1,61 @@
+# Copyright 2007 Google, Inc. All Rights Reserved.
+# Licensed to PSF under a Contributor Agreement.
+
+"""Fixer for removing uses of the types module.
+
+These work for only the known names in the types module.  The forms above
+can include types. or not.  ie, It is assumed the module is imported either as:
+
+    import types
+    from types import ... # either * or specific types
+
+The import statements are not modified.
+
+There should be another fixer that handles at least the following constants:
+
+   type([]) -> list
+   type(()) -> tuple
+   type('') -> str
+
+"""
+
+# Local imports
+from .. import fixer_base
+from ..fixer_util import Name
+
+_TYPE_MAPPING = {
+        'BooleanType' : 'bool',
+        'BufferType' : 'memoryview',
+        'ClassType' : 'type',
+        'ComplexType' : 'complex',
+        'DictType': 'dict',
+        'DictionaryType' : 'dict',
+        'EllipsisType' : 'type(Ellipsis)',
+        #'FileType' : 'io.IOBase',
+        'FloatType': 'float',
+        'IntType': 'int',
+        'ListType': 'list',
+        'LongType': 'int',
+        'ObjectType' : 'object',
+        'NoneType': 'type(None)',
+        'NotImplementedType' : 'type(NotImplemented)',
+        'SliceType' : 'slice',
+        'StringType': 'bytes', # XXX ?
+        'StringTypes' : '(str,)', # XXX ?
+        'TupleType': 'tuple',
+        'TypeType' : 'type',
+        'UnicodeType': 'str',
+        'XRangeType' : 'range',
+    }
+
+_pats = ["power< 'types' trailer< '.' name='%s' > >" % t for t in _TYPE_MAPPING]
+
+class FixTypes(fixer_base.BaseFix):
+    BM_compatible = True
+    PATTERN = '|'.join(_pats)
+
+    def transform(self, node, results):
+        new_value = _TYPE_MAPPING.get(results["name"].value)
+        if new_value:
+            return Name(new_value, prefix=node.prefix)
+        return None

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_unicode.py

@@ -0,0 +1,42 @@
+r"""Fixer for unicode.
+
+* Changes unicode to str and unichr to chr.
+
+* If "...\u..." is not unicode literal change it into "...\\u...".
+
+* Change u"..." into "...".
+
+"""
+
+from ..pgen2 import token
+from .. import fixer_base
+
+_mapping = {"unichr" : "chr", "unicode" : "str"}
+
+class FixUnicode(fixer_base.BaseFix):
+    BM_compatible = True
+    PATTERN = "STRING | 'unicode' | 'unichr'"
+
+    def start_tree(self, tree, filename):
+        super(FixUnicode, self).start_tree(tree, filename)
+        self.unicode_literals = 'unicode_literals' in tree.future_features
+
+    def transform(self, node, results):
+        if node.type == token.NAME:
+            new = node.clone()
+            new.value = _mapping[node.value]
+            return new
+        elif node.type == token.STRING:
+            val = node.value
+            if not self.unicode_literals and val[0] in '\'"' and '\\' in val:
+                val = r'\\'.join([
+                    v.replace('\\u', r'\\u').replace('\\U', r'\\U')
+                    for v in val.split(r'\\')
+                ])
+            if val[0] in 'uU':
+                val = val[1:]
+            if val == node.value:
+                return node
+            new = node.clone()
+            new.value = val
+            return new

evalkit_cambrian/lib/python3.10/lib2to3/fixes/fix_xreadlines.py

@@ -0,0 +1,25 @@
+"""Fix "for x in f.xreadlines()" -> "for x in f".
+
+This fixer will also convert g(f.xreadlines) into g(f.__iter__)."""
+# Author: Collin Winter
+
+# Local imports
+from .. import fixer_base
+from ..fixer_util import Name
+
+
+class FixXreadlines(fixer_base.BaseFix):
+    BM_compatible = True
+    PATTERN = """
+    power< call=any+ trailer< '.' 'xreadlines' > trailer< '(' ')' > >
+    |
+    power< any+ trailer< '.' no_call='xreadlines' > >
+    """
+
+    def transform(self, node, results):
+        no_call = results.get("no_call")
+
+        if no_call:
+            no_call.replace(Name("__iter__", prefix=no_call.prefix))
+        else:
+            node.replace([x.clone() for x in results["call"]])

evalkit_cambrian/lib/python3.10/lib2to3/main.py

@@ -0,0 +1,273 @@
+"""
+Main program for 2to3.
+"""
+
+from __future__ import with_statement, print_function
+
+import sys
+import os
+import difflib
+import logging
+import shutil
+import optparse
+
+from . import refactor
+
+
+def diff_texts(a, b, filename):
+    """Return a unified diff of two strings."""
+    a = a.splitlines()
+    b = b.splitlines()
+    return difflib.unified_diff(a, b, filename, filename,
+                                "(original)", "(refactored)",
+                                lineterm="")
+
+
+class StdoutRefactoringTool(refactor.MultiprocessRefactoringTool):
+    """
+    A refactoring tool that can avoid overwriting its input files.
+    Prints output to stdout.
+
+    Output files can optionally be written to a different directory and or
+    have an extra file suffix appended to their name for use in situations
+    where you do not want to replace the input files.
+    """
+
+    def __init__(self, fixers, options, explicit, nobackups, show_diffs,
+                 input_base_dir='', output_dir='', append_suffix=''):
+        """
+        Args:
+            fixers: A list of fixers to import.
+            options: A dict with RefactoringTool configuration.
+            explicit: A list of fixers to run even if they are explicit.
+            nobackups: If true no backup '.bak' files will be created for those
+                files that are being refactored.
+            show_diffs: Should diffs of the refactoring be printed to stdout?
+            input_base_dir: The base directory for all input files.  This class
+                will strip this path prefix off of filenames before substituting
+                it with output_dir.  Only meaningful if output_dir is supplied.
+                All files processed by refactor() must start with this path.
+            output_dir: If supplied, all converted files will be written into
+                this directory tree instead of input_base_dir.
+            append_suffix: If supplied, all files output by this tool will have
+                this appended to their filename.  Useful for changing .py to
+                .py3 for example by passing append_suffix='3'.
+        """
+        self.nobackups = nobackups
+        self.show_diffs = show_diffs
+        if input_base_dir and not input_base_dir.endswith(os.sep):
+            input_base_dir += os.sep
+        self._input_base_dir = input_base_dir
+        self._output_dir = output_dir
+        self._append_suffix = append_suffix
+        super(StdoutRefactoringTool, self).__init__(fixers, options, explicit)
+
+    def log_error(self, msg, *args, **kwargs):
+        self.errors.append((msg, args, kwargs))
+        self.logger.error(msg, *args, **kwargs)
+
+    def write_file(self, new_text, filename, old_text, encoding):
+        orig_filename = filename
+        if self._output_dir:
+            if filename.startswith(self._input_base_dir):
+                filename = os.path.join(self._output_dir,
+                                        filename[len(self._input_base_dir):])
+            else:
+                raise ValueError('filename %s does not start with the '
+                                 'input_base_dir %s' % (
+                                         filename, self._input_base_dir))
+        if self._append_suffix:
+            filename += self._append_suffix
+        if orig_filename != filename:
+            output_dir = os.path.dirname(filename)
+            if not os.path.isdir(output_dir) and output_dir:
+                os.makedirs(output_dir)
+            self.log_message('Writing converted %s to %s.', orig_filename,
+                             filename)
+        if not self.nobackups:
+            # Make backup
+            backup = filename + ".bak"
+            if os.path.lexists(backup):
+                try:
+                    os.remove(backup)
+                except OSError:
+                    self.log_message("Can't remove backup %s", backup)
+            try:
+                os.rename(filename, backup)
+            except OSError:
+                self.log_message("Can't rename %s to %s", filename, backup)
+        # Actually write the new file
+        write = super(StdoutRefactoringTool, self).write_file
+        write(new_text, filename, old_text, encoding)
+        if not self.nobackups:
+            shutil.copymode(backup, filename)
+        if orig_filename != filename:
+            # Preserve the file mode in the new output directory.
+            shutil.copymode(orig_filename, filename)
+
+    def print_output(self, old, new, filename, equal):
+        if equal:
+            self.log_message("No changes to %s", filename)
+        else:
+            self.log_message("Refactored %s", filename)
+            if self.show_diffs:
+                diff_lines = diff_texts(old, new, filename)
+                try:
+                    if self.output_lock is not None:
+                        with self.output_lock:
+                            for line in diff_lines:
+                                print(line)
+                            sys.stdout.flush()
+                    else:
+                        for line in diff_lines:
+                            print(line)
+                except UnicodeEncodeError:
+                    warn("couldn't encode %s's diff for your terminal" %
+                         (filename,))
+                    return
+
+def warn(msg):
+    print("WARNING: %s" % (msg,), file=sys.stderr)
+
+
+def main(fixer_pkg, args=None):
+    """Main program.
+
+    Args:
+        fixer_pkg: the name of a package where the fixers are located.
+        args: optional; a list of command line arguments. If omitted,
+              sys.argv[1:] is used.
+
+    Returns a suggested exit status (0, 1, 2).
+    """
+    # Set up option parser
+    parser = optparse.OptionParser(usage="2to3 [options] file|dir ...")
+    parser.add_option("-d", "--doctests_only", action="store_true",
+                      help="Fix up doctests only")
+    parser.add_option("-f", "--fix", action="append", default=[],
+                      help="Each FIX specifies a transformation; default: all")
+    parser.add_option("-j", "--processes", action="store", default=1,
+                      type="int", help="Run 2to3 concurrently")
+    parser.add_option("-x", "--nofix", action="append", default=[],
+                      help="Prevent a transformation from being run")
+    parser.add_option("-l", "--list-fixes", action="store_true",
+                      help="List available transformations")
+    parser.add_option("-p", "--print-function", action="store_true",
+                      help="Modify the grammar so that print() is a function")
+    parser.add_option("-e", "--exec-function", action="store_true",
+                      help="Modify the grammar so that exec() is a function")
+    parser.add_option("-v", "--verbose", action="store_true",
+                      help="More verbose logging")
+    parser.add_option("--no-diffs", action="store_true",
+                      help="Don't show diffs of the refactoring")
+    parser.add_option("-w", "--write", action="store_true",
+                      help="Write back modified files")
+    parser.add_option("-n", "--nobackups", action="store_true", default=False,
+                      help="Don't write backups for modified files")
+    parser.add_option("-o", "--output-dir", action="store", type="str",
+                      default="", help="Put output files in this directory "
+                      "instead of overwriting the input files.  Requires -n.")
+    parser.add_option("-W", "--write-unchanged-files", action="store_true",
+                      help="Also write files even if no changes were required"
+                      " (useful with --output-dir); implies -w.")
+    parser.add_option("--add-suffix", action="store", type="str", default="",
+                      help="Append this string to all output filenames."
+                      " Requires -n if non-empty.  "
+                      "ex: --add-suffix='3' will generate .py3 files.")
+
+    # Parse command line arguments
+    refactor_stdin = False
+    flags = {}
+    options, args = parser.parse_args(args)
+    if options.write_unchanged_files:
+        flags["write_unchanged_files"] = True
+        if not options.write:
+            warn("--write-unchanged-files/-W implies -w.")
+        options.write = True
+    # If we allowed these, the original files would be renamed to backup names
+    # but not replaced.
+    if options.output_dir and not options.nobackups:
+        parser.error("Can't use --output-dir/-o without -n.")
+    if options.add_suffix and not options.nobackups:
+        parser.error("Can't use --add-suffix without -n.")
+
+    if not options.write and options.no_diffs:
+        warn("not writing files and not printing diffs; that's not very useful")
+    if not options.write and options.nobackups:
+        parser.error("Can't use -n without -w")
+    if options.list_fixes:
+        print("Available transformations for the -f/--fix option:")
+        for fixname in refactor.get_all_fix_names(fixer_pkg):
+            print(fixname)
+        if not args:
+            return 0
+    if not args:
+        print("At least one file or directory argument required.", file=sys.stderr)
+        print("Use --help to show usage.", file=sys.stderr)
+        return 2
+    if "-" in args:
+        refactor_stdin = True
+        if options.write:
+            print("Can't write to stdin.", file=sys.stderr)
+            return 2
+    if options.print_function:
+        flags["print_function"] = True
+
+    if options.exec_function:
+        flags["exec_function"] = True
+
+    # Set up logging handler
+    level = logging.DEBUG if options.verbose else logging.INFO
+    logging.basicConfig(format='%(name)s: %(message)s', level=level)
+    logger = logging.getLogger('lib2to3.main')
+
+    # Initialize the refactoring tool
+    avail_fixes = set(refactor.get_fixers_from_package(fixer_pkg))
+    unwanted_fixes = set(fixer_pkg + ".fix_" + fix for fix in options.nofix)
+    explicit = set()
+    if options.fix:
+        all_present = False
+        for fix in options.fix:
+            if fix == "all":
+                all_present = True
+            else:
+                explicit.add(fixer_pkg + ".fix_" + fix)
+        requested = avail_fixes.union(explicit) if all_present else explicit
+    else:
+        requested = avail_fixes.union(explicit)
+    fixer_names = requested.difference(unwanted_fixes)
+    input_base_dir = os.path.commonprefix(args)
+    if (input_base_dir and not input_base_dir.endswith(os.sep)
+        and not os.path.isdir(input_base_dir)):
+        # One or more similar names were passed, their directory is the base.
+        # os.path.commonprefix() is ignorant of path elements, this corrects
+        # for that weird API.
+        input_base_dir = os.path.dirname(input_base_dir)
+    if options.output_dir:
+        input_base_dir = input_base_dir.rstrip(os.sep)
+        logger.info('Output in %r will mirror the input directory %r layout.',
+                    options.output_dir, input_base_dir)
+    rt = StdoutRefactoringTool(
+            sorted(fixer_names), flags, sorted(explicit),
+            options.nobackups, not options.no_diffs,
+            input_base_dir=input_base_dir,
+            output_dir=options.output_dir,
+            append_suffix=options.add_suffix)
+
+    # Refactor all files and directories passed as arguments
+    if not rt.errors:
+        if refactor_stdin:
+            rt.refactor_stdin()
+        else:
+            try:
+                rt.refactor(args, options.write, options.doctests_only,
+                            options.processes)
+            except refactor.MultiprocessingUnsupported:
+                assert options.processes > 1
+                print("Sorry, -j isn't supported on this platform.",
+                      file=sys.stderr)
+                return 1
+        rt.summarize()
+
+    # Return error status (0 if rt.errors is zero)
+    return int(bool(rt.errors))

evalkit_cambrian/lib/python3.10/lib2to3/patcomp.py

@@ -0,0 +1,204 @@
+# Copyright 2006 Google, Inc. All Rights Reserved.
+# Licensed to PSF under a Contributor Agreement.
+
+"""Pattern compiler.
+
+The grammar is taken from PatternGrammar.txt.
+
+The compiler compiles a pattern to a pytree.*Pattern instance.
+"""
+
+__author__ = "Guido van Rossum <guido@python.org>"
+
+# Python imports
+import io
+
+# Fairly local imports
+from .pgen2 import driver, literals, token, tokenize, parse, grammar
+
+# Really local imports
+from . import pytree
+from . import pygram
+
+
+class PatternSyntaxError(Exception):
+    pass
+
+
+def tokenize_wrapper(input):
+    """Tokenizes a string suppressing significant whitespace."""
+    skip = {token.NEWLINE, token.INDENT, token.DEDENT}
+    tokens = tokenize.generate_tokens(io.StringIO(input).readline)
+    for quintuple in tokens:
+        type, value, start, end, line_text = quintuple
+        if type not in skip:
+            yield quintuple
+
+
+class PatternCompiler(object):
+
+    def __init__(self, grammar_file=None):
+        """Initializer.
+
+        Takes an optional alternative filename for the pattern grammar.
+        """
+        if grammar_file is None:
+            self.grammar = pygram.pattern_grammar
+            self.syms = pygram.pattern_symbols
+        else:
+            self.grammar = driver.load_grammar(grammar_file)
+            self.syms = pygram.Symbols(self.grammar)
+        self.pygrammar = pygram.python_grammar
+        self.pysyms = pygram.python_symbols
+        self.driver = driver.Driver(self.grammar, convert=pattern_convert)
+
+    def compile_pattern(self, input, debug=False, with_tree=False):
+        """Compiles a pattern string to a nested pytree.*Pattern object."""
+        tokens = tokenize_wrapper(input)
+        try:
+            root = self.driver.parse_tokens(tokens, debug=debug)
+        except parse.ParseError as e:
+            raise PatternSyntaxError(str(e)) from None
+        if with_tree:
+            return self.compile_node(root), root
+        else:
+            return self.compile_node(root)
+
+    def compile_node(self, node):
+        """Compiles a node, recursively.
+
+        This is one big switch on the node type.
+        """
+        # XXX Optimize certain Wildcard-containing-Wildcard patterns
+        # that can be merged
+        if node.type == self.syms.Matcher:
+            node = node.children[0] # Avoid unneeded recursion
+
+        if node.type == self.syms.Alternatives:
+            # Skip the odd children since they are just '|' tokens
+            alts = [self.compile_node(ch) for ch in node.children[::2]]
+            if len(alts) == 1:
+                return alts[0]
+            p = pytree.WildcardPattern([[a] for a in alts], min=1, max=1)
+            return p.optimize()
+
+        if node.type == self.syms.Alternative:
+            units = [self.compile_node(ch) for ch in node.children]
+            if len(units) == 1:
+                return units[0]
+            p = pytree.WildcardPattern([units], min=1, max=1)
+            return p.optimize()
+
+        if node.type == self.syms.NegatedUnit:
+            pattern = self.compile_basic(node.children[1:])
+            p = pytree.NegatedPattern(pattern)
+            return p.optimize()
+
+        assert node.type == self.syms.Unit
+
+        name = None
+        nodes = node.children
+        if len(nodes) >= 3 and nodes[1].type == token.EQUAL:
+            name = nodes[0].value
+            nodes = nodes[2:]
+        repeat = None
+        if len(nodes) >= 2 and nodes[-1].type == self.syms.Repeater:
+            repeat = nodes[-1]
+            nodes = nodes[:-1]
+
+        # Now we've reduced it to: STRING | NAME [Details] | (...) | [...]
+        pattern = self.compile_basic(nodes, repeat)
+
+        if repeat is not None:
+            assert repeat.type == self.syms.Repeater
+            children = repeat.children
+            child = children[0]
+            if child.type == token.STAR:
+                min = 0
+                max = pytree.HUGE
+            elif child.type == token.PLUS:
+                min = 1
+                max = pytree.HUGE
+            elif child.type == token.LBRACE:
+                assert children[-1].type == token.RBRACE
+                assert  len(children) in (3, 5)
+                min = max = self.get_int(children[1])
+                if len(children) == 5:
+                    max = self.get_int(children[3])
+            else:
+                assert False
+            if min != 1 or max != 1:
+                pattern = pattern.optimize()
+                pattern = pytree.WildcardPattern([[pattern]], min=min, max=max)
+
+        if name is not None:
+            pattern.name = name
+        return pattern.optimize()
+
+    def compile_basic(self, nodes, repeat=None):
+        # Compile STRING | NAME [Details] | (...) | [...]
+        assert len(nodes) >= 1
+        node = nodes[0]
+        if node.type == token.STRING:
+            value = str(literals.evalString(node.value))
+            return pytree.LeafPattern(_type_of_literal(value), value)
+        elif node.type == token.NAME:
+            value = node.value
+            if value.isupper():
+                if value not in TOKEN_MAP:
+                    raise PatternSyntaxError("Invalid token: %r" % value)
+                if nodes[1:]:
+                    raise PatternSyntaxError("Can't have details for token")
+                return pytree.LeafPattern(TOKEN_MAP[value])
+            else:
+                if value == "any":
+                    type = None
+                elif not value.startswith("_"):
+                    type = getattr(self.pysyms, value, None)
+                    if type is None:
+                        raise PatternSyntaxError("Invalid symbol: %r" % value)
+                if nodes[1:]: # Details present
+                    content = [self.compile_node(nodes[1].children[1])]
+                else:
+                    content = None
+                return pytree.NodePattern(type, content)
+        elif node.value == "(":
+            return self.compile_node(nodes[1])
+        elif node.value == "[":
+            assert repeat is None
+            subpattern = self.compile_node(nodes[1])
+            return pytree.WildcardPattern([[subpattern]], min=0, max=1)
+        assert False, node
+
+    def get_int(self, node):
+        assert node.type == token.NUMBER
+        return int(node.value)
+
+
+# Map named tokens to the type value for a LeafPattern
+TOKEN_MAP = {"NAME": token.NAME,
+             "STRING": token.STRING,
+             "NUMBER": token.NUMBER,
+             "TOKEN": None}
+
+
+def _type_of_literal(value):
+    if value[0].isalpha():
+        return token.NAME
+    elif value in grammar.opmap:
+        return grammar.opmap[value]
+    else:
+        return None
+
+
+def pattern_convert(grammar, raw_node_info):
+    """Converts raw node information to a Node or Leaf instance."""
+    type, value, context, children = raw_node_info
+    if children or type in grammar.number2symbol:
+        return pytree.Node(type, children, context=context)
+    else:
+        return pytree.Leaf(type, value, context=context)
+
+
+def compile_pattern(pattern):
+    return PatternCompiler().compile_pattern(pattern)