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"""
Author(s): Matthew Loper
See LICENCE.txt for licensing and contact information.
"""
from . import ch
import numpy as np
from os.path import join, split
from six import StringIO
import numpy
import chumpy
from six.moves import cPickle as pickle
src = ''
num_passed = 0
num_not_passed = 0
which_passed = []
def r(fn_name, args_req, args_opt, nplib=numpy, chlib=chumpy):
global num_passed, num_not_passed
result = [None, None]
for lib in [nplib, chlib]:
# if fn_name is 'svd' and lib is chlib:
# import pdb; pdb.set_trace()
if lib is nplib:
fn = getattr(lib, fn_name)
else:
try:
fn = getattr(lib, fn_name)
except AttributeError:
result[0] = 'missing'
result[1] = 'missing'
num_not_passed += 1
continue
try:
if isinstance(args_req, dict):
_ = fn(**args_req)
else:
_ = fn(*args_req)
if lib is chlib:
result[0] = 'passed'
num_passed += 1
global which_passed
which_passed.append(fn_name)
if hasattr(_, 'dterms'):
try:
_.r
try:
pickle.dumps(_)
except:
result[0] += ' (but unpickleable!)'
except:
import pdb; pdb.set_trace()
result[0] += '(but cant get result!)'
except Exception as e:
if e is TypeError:
import pdb; pdb.set_trace()
if lib is nplib:
import pdb; pdb.set_trace()
else:
num_not_passed += 1
# if fn_name == 'rot90':
# import pdb; pdb.set_trace()
result[0] = e.__class__.__name__
try:
if isinstance(args_req, dict):
fn(**dict(list(args_req.items()) + list(args_opt.items())))
else:
fn(*args_req, **args_opt)
if lib is chlib:
result[1] = 'passed'
except Exception as e:
if e is TypeError:
import pdb; pdb.set_trace()
result[1] = e.__class__.__name__
# print '%s: %s, %s' % (fn_name, result[0], result[1])
append(fn_name, result[0], result[1])
def make_row(a, b, c, b_color, c_color):
global src
src += '<tr><td>%s</td><td style="background-color:%s">%s</td><td style="background-color:%s">%s</td></tr>' % (a,b_color, b,c_color, c)
def append(a, b, c):
global src
b_color = 'white'
c_color = 'white'
b = b.replace('NotImplementedError', 'not yet implemented')
c = c.replace('NotImplementedError', 'not yet implemented')
b = b.replace('WontImplement', "won't implement")
c = c.replace('WontImplement', "won't implement")
lookup = {
'passed': 'lightgreen',
"won't implement": 'lightgray',
'untested': 'lightyellow',
'not yet implemented': 'pink'
}
b_color = lookup[b] if b in lookup else 'white'
c_color = lookup[c] if c in lookup else 'white'
print('%s: %s, %s' % (a,b,c))
make_row(a, b, c, b_color, c_color)
def m(s):
append(s, 'unknown', 'unknown')
global num_not_passed
num_not_passed += 1
def hd3(s):
global src
src += '<tr><td colspan=3><h3 style="margin-bottom:0;">%s</h3></td></tr>' % (s,)
def hd2(s):
global src
src += '</table><br/><br/><table border=1>'
src += '<tr><td colspan=3 style="background-color:black;color:white"><h2 style="margin-bottom:0;">%s</h2></td></tr>' % (s,)
def main():
#sample_array
###############################
hd2('Array Creation Routines')
hd3('Ones and zeros')
r('empty', {'shape': (2,4,2)}, {'dtype': np.uint8, 'order': 'C'})
r('empty_like', {'prototype': np.empty((2,4,2))}, {'dtype': np.float64, 'order': 'C'})
r('eye', {'N': 10}, {'M': 5, 'k': 0, 'dtype': np.float64})
r('identity', {'n': 10}, {'dtype': np.float64})
r('ones', {'shape': (2,4,2)}, {'dtype': np.uint8, 'order': 'C'})
r('ones_like', {'a': np.empty((2,4,2))}, {'dtype': np.float64, 'order': 'C'})
r('zeros', {'shape': (2,4,2)}, {'dtype': np.uint8, 'order': 'C'})
r('zeros_like', {'a': np.empty((2,4,2))}, {'dtype': np.float64, 'order': 'C'})
hd3('From existing data')
r('array', {'object': [1,2,3]}, {'dtype': np.float64, 'order': 'C', 'subok': False, 'ndmin': 2})
r('asarray', {'a': np.array([1,2,3])}, {'dtype': np.float64, 'order': 'C'})
r('asanyarray', {'a': np.array([1,2,3])}, {'dtype': np.float64, 'order': 'C'})
r('ascontiguousarray', {'a': np.array([1,2,3])}, {'dtype': np.float64})
r('asmatrix', {'data': np.array([1,2,3])}, {'dtype': np.float64})
r('copy', (np.array([1,2,3]),), {})
r('frombuffer', {'buffer': np.array([1,2,3])}, {})
m('fromfile')
r('fromfunction', {'function': lambda i, j: i + j, 'shape': (3, 3)}, {'dtype': np.float64})
# function, shape, **kwargs
# lambda i, j: i + j, (3, 3), dtype=int
r('fromiter', {'iter': [1,2,3,4], 'dtype': np.float64}, {'count': 2})
r('fromstring', {'string': '\x01\x02', 'dtype': np.uint8}, {})
r('loadtxt', {'fname': StringIO("0 1\n2 3")}, {})
hd3('Creating record arrays (wont be implemented)')
hd3('Creating character arrays (wont be implemented)')
hd3('Numerical ranges')
r('arange', {'start': 0, 'stop': 10}, {'step': 2, 'dtype': np.float64})
r('linspace', {'start': 0, 'stop': 10}, {'num': 2, 'endpoint': 10, 'retstep': 1})
r('logspace', {'start': 0, 'stop': 10}, {'num': 2, 'endpoint': 10, 'base': 1})
r('meshgrid', ([1,2,3], [4,5,6]), {})
m('mgrid')
m('ogrid')
hd3('Building matrices')
r('diag', {'v': np.arange(9).reshape((3,3))}, {'k': 0})
r('diagflat', {'v': [[1,2], [3,4]]}, {})
r('tri', {'N': 3}, {'M': 5, 'k': 2, 'dtype': np.float64})
r('tril', {'m': [[1,2,3],[4,5,6],[7,8,9],[10,11,12]]}, {'k': -1})
r('triu', {'m': [[1,2,3],[4,5,6],[7,8,9],[10,11,12]]}, {'k': -1})
r('vander', {'x': np.array([1, 2, 3, 5])}, {'N': 3})
###############################
hd2('Array manipulation routines')
hd3('Basic operations')
r('copyto', {'dst': np.eye(3), 'src': np.eye(3)}, {})
hd3('Changing array shape')
r('reshape', {'a': np.eye(3), 'newshape': (9,)}, {'order' : 'C'})
r('ravel', {'a': np.eye(3)}, {'order' : 'C'})
m('flat')
m('flatten')
hd3('Transpose-like operations')
r('rollaxis', {'a': np.ones((3,4,5,6)), 'axis': 3}, {'start': 0})
r('swapaxes', {'a': np.array([[1,2,3]]), 'axis1': 0, 'axis2': 1}, {})
r('transpose', {'a': np.arange(4).reshape((2,2))}, {'axes': (1,0)})
hd3('Changing number of dimensions')
r('atleast_1d', (np.eye(3),), {})
r('atleast_2d', (np.eye(3),), {})
r('atleast_3d', (np.eye(3),), {})
m('broadcast')
m('broadcast_arrays')
r('expand_dims', (np.array([1,2]),2), {})
r('squeeze', {'a': (np.array([[[1,2,3]]]))}, {})
hd3('Changing kind of array')
r('asarray', {'a': np.array([1,2,3])}, {'dtype': np.float64, 'order': 'C'})
r('asanyarray', {'a': np.array([1,2,3])}, {'dtype': np.float64, 'order': 'C'})
r('asmatrix', {'data': np.array([1,2,3])}, {})
r('asfarray', {'a': np.array([1,2,3])}, {})
r('asfortranarray', {'a': np.array([1,2,3])}, {})
r('asscalar', {'a': np.array([24])}, {})
r('require', {'a': np.array([24])}, {})
hd3('Joining arrays')
m('column_stack')
r('concatenate', ((np.eye(3), np.eye(3)),1), {})
r('dstack', ((np.eye(3), np.eye(3)),), {})
r('hstack', ((np.eye(3), np.eye(3)),), {})
r('vstack', ((np.eye(3), np.eye(3)),), {})
hd3('Splitting arrays')
m('array_split')
m('dsplit')
m('hsplit')
m('split')
m('vsplit')
hd3('Tiling arrays')
r('tile', (np.array([0, 1, 2]),2), {})
r('repeat', (np.array([[1,2],[3,4]]), 3), {'axis': 1})
hd3('Adding and removing elements')
m('delete')
m('insert')
m('append')
m('resize')
m('trim_zeros')
m('unique')
hd3('Rearranging elements')
r('fliplr', (np.eye(3),), {})
r('flipud', (np.eye(3),), {})
r('reshape', {'a': np.eye(3), 'newshape': (9,)}, {'order' : 'C'})
r('roll', (np.arange(10), 2), {})
r('rot90', (np.arange(4).reshape((2,2)),), {})
###############################
hd2('Linear algebra (numpy.linalg)')
extra_args = {'nplib': numpy.linalg, 'chlib': ch.linalg}
hd3('Matrix and dot products')
r('dot', {'a': np.eye(3), 'b': np.eye(3)}, {})
r('dot', {'a': np.eye(3).ravel(), 'b': np.eye(3).ravel()}, {})
r('vdot', (np.eye(3).ravel(), np.eye(3).ravel()), {})
r('inner', (np.eye(3).ravel(), np.eye(3).ravel()), {})
r('outer', (np.eye(3).ravel(), np.eye(3).ravel()), {})
r('tensordot', {'a': np.eye(3), 'b': np.eye(3)}, {})
m('einsum')
r('matrix_power', {'M': np.eye(3), 'n': 2}, {}, **extra_args)
r('kron', {'a': np.eye(3), 'b': np.eye(3)}, {})
hd3('Decompositions')
r('cholesky', {'a': np.eye(3)}, {}, **extra_args)
r('qr', {'a': np.eye(3)}, {}, **extra_args)
r('svd', (np.eye(3),), {}, **extra_args)
hd3('Matrix eigenvalues')
r('eig', (np.eye(3),), {}, **extra_args)
r('eigh', (np.eye(3),), {}, **extra_args)
r('eigvals', (np.eye(3),), {}, **extra_args)
r('eigvalsh', (np.eye(3),), {}, **extra_args)
hd3('Norms and other numbers')
r('norm', (np.eye(3),), {}, **extra_args)
r('cond', (np.eye(3),), {}, **extra_args)
r('det', (np.eye(3),), {}, **extra_args)
r('slogdet', (np.eye(3),), {}, **extra_args)
r('trace', (np.eye(3),), {})
hd3('Solving equations and inverting matrices')
r('solve', (np.eye(3),np.ones(3)), {}, **extra_args)
r('tensorsolve', (np.eye(3),np.ones(3)), {}, **extra_args)
r('lstsq', (np.eye(3),np.ones(3)), {}, **extra_args)
r('inv', (np.eye(3),), {}, **extra_args)
r('pinv', (np.eye(3),), {}, **extra_args)
r('tensorinv', (np.eye(4*6).reshape((4,6,8,3)),), {'ind': 2}, **extra_args)
hd2('Mathematical functions')
hd3('Trigonometric functions')
r('sin', (np.arange(3),), {})
r('cos', (np.arange(3),), {})
r('tan', (np.arange(3),), {})
r('arcsin', (np.arange(3)/3.,), {})
r('arccos', (np.arange(3)/3.,), {})
r('arctan', (np.arange(3)/3.,), {})
r('hypot', (np.arange(3),np.arange(3)), {})
r('arctan2', (np.arange(3),np.arange(3)), {})
r('degrees', (np.arange(3),), {})
r('radians', (np.arange(3),), {})
r('unwrap', (np.arange(3),), {})
r('unwrap', (np.arange(3),), {})
r('deg2rad', (np.arange(3),), {})
r('rad2deg', (np.arange(3),), {})
hd3('Hyperbolic functions')
r('sinh', (np.arange(3),), {})
r('cosh', (np.arange(3),), {})
r('tanh', (np.arange(3),), {})
r('arcsinh', (np.arange(3)/9.,), {})
r('arccosh', (-np.arange(3)/9.,), {})
r('arctanh', (np.arange(3)/9.,), {})
hd3('Rounding')
r('around', (np.arange(3),), {})
r('round_', (np.arange(3),), {})
r('rint', (np.arange(3),), {})
r('fix', (np.arange(3),), {})
r('floor', (np.arange(3),), {})
r('ceil', (np.arange(3),), {})
r('trunc', (np.arange(3),), {})
hd3('Sums, products, differences')
r('prod', (np.arange(3),), {})
r('sum', (np.arange(3),), {})
r('nansum', (np.arange(3),), {})
r('cumprod', (np.arange(3),), {})
r('cumsum', (np.arange(3),), {})
r('diff', (np.arange(3),), {})
r('ediff1d', (np.arange(3),), {})
r('gradient', (np.arange(3),), {})
r('cross', (np.arange(3), np.arange(3)), {})
r('trapz', (np.arange(3),), {})
hd3('Exponents and logarithms')
r('exp', (np.arange(3),), {})
r('expm1', (np.arange(3),), {})
r('exp2', (np.arange(3),), {})
r('log', (np.arange(3),), {})
r('log10', (np.arange(3),), {})
r('log2', (np.arange(3),), {})
r('log1p', (np.arange(3),), {})
r('logaddexp', (np.arange(3), np.arange(3)), {})
r('logaddexp2', (np.arange(3), np.arange(3)), {})
hd3('Other special functions')
r('i0', (np.arange(3),), {})
r('sinc', (np.arange(3),), {})
hd3('Floating point routines')
r('signbit', (np.arange(3),), {})
r('copysign', (np.arange(3), np.arange(3)), {})
r('frexp', (np.arange(3),), {})
r('ldexp', (np.arange(3), np.arange(3)), {})
hd3('Arithmetic operations')
r('add', (np.arange(3), np.arange(3)), {})
r('reciprocal', (np.arange(3),), {})
r('negative', (np.arange(3),), {})
r('multiply', (np.arange(3), np.arange(3)), {})
r('divide', (np.arange(3), np.arange(3)), {})
r('power', (np.arange(3), np.arange(3)), {})
r('subtract', (np.arange(3), np.arange(3)), {})
r('true_divide', (np.arange(3), np.arange(3)), {})
r('floor_divide', (np.arange(3), np.arange(3)), {})
r('fmod', (np.arange(3), np.arange(3)), {})
r('mod', (np.arange(3), np.arange(3)), {})
r('modf', (np.arange(3),), {})
r('remainder', (np.arange(3), np.arange(3)), {})
hd3('Handling complex numbers')
m('angle')
m('real')
m('imag')
m('conj')
hd3('Miscellaneous')
r('convolve', (np.arange(3), np.arange(3)), {})
r('clip', (np.arange(3), 0, 2), {})
r('sqrt', (np.arange(3),), {})
r('square', (np.arange(3),), {})
r('absolute', (np.arange(3),), {})
r('fabs', (np.arange(3),), {})
r('sign', (np.arange(3),), {})
r('maximum', (np.arange(3), np.arange(3)), {})
r('minimum', (np.arange(3), np.arange(3)), {})
r('fmax', (np.arange(3), np.arange(3)), {})
r('fmin', (np.arange(3), np.arange(3)), {})
r('nan_to_num', (np.arange(3),), {})
r('real_if_close', (np.arange(3),), {})
r('interp', (2.5, [1,2,3], [3,2,0]), {})
extra_args = {'nplib': numpy.random, 'chlib': ch.random}
hd2('Random sampling (numpy.random)')
hd3('Simple random data')
r('rand', (3,), {}, **extra_args)
r('randn', (3,), {}, **extra_args)
r('randint', (3,), {}, **extra_args)
r('random_integers', (3,), {}, **extra_args)
r('random_sample', (3,), {}, **extra_args)
r('random', (3,), {}, **extra_args)
r('ranf', (3,), {}, **extra_args)
r('sample', (3,), {}, **extra_args)
r('choice', (np.ones(3),), {}, **extra_args)
r('bytes', (3,), {}, **extra_args)
hd3('Permutations')
r('shuffle', (np.ones(3),), {}, **extra_args)
r('permutation', (3,), {}, **extra_args)
hd3('Distributions (these all pass)')
r('beta', (.5, .5), {}, **extra_args)
r('binomial', (.5, .5), {}, **extra_args)
r('chisquare', (.5,), {}, **extra_args)
r('dirichlet', ((10, 5, 3), 20,), {}, **extra_args)
r('exponential', [], {}, **extra_args)
r('f', [1,48,1000], {}, **extra_args)
r('gamma', [.5], {}, **extra_args)
make_row('...AND 28 OTHERS...', 'passed', 'passed', 'lightgreen', 'lightgreen')
hd3('Random generator')
r('seed', [], {}, **extra_args)
r('get_state', [], {}, **extra_args)
r('set_state', [np.random.get_state()], {}, **extra_args)
####################################
hd2('Statistics')
hd3('Order statistics')
r('amin', (np.eye(3),),{})
r('amax', (np.eye(3),),{})
r('nanmin', (np.eye(3),),{})
r('nanmax', (np.eye(3),),{})
r('ptp', (np.eye(3),),{})
r('percentile', (np.eye(3),50),{})
hd3('Averages and variance')
r('median', (np.eye(3),),{})
r('average', (np.eye(3),),{})
r('mean', (np.eye(3),),{})
r('std', (np.eye(3),),{})
r('var', (np.eye(3),),{})
r('nanmean', (np.eye(3),),{})
r('nanstd', (np.eye(3),),{})
r('nanvar', (np.eye(3),),{})
hd3('Correlating')
r('corrcoef', (np.eye(3),),{})
r('correlate', ([1, 2, 3], [0, 1, 0.5]),{})
r('cov', (np.eye(3),),{})
hd3('Histograms')
r('histogram', (np.eye(3),),{})
r('histogram2d', (np.eye(3).ravel(),np.eye(3).ravel()),{})
r('histogramdd', (np.eye(3).ravel(),),{})
r('bincount', (np.asarray(np.eye(3).ravel(), np.uint32),),{})
r('digitize', (np.array([0.2, 6.4, 3.0, 1.6]), np.array([0.0, 1.0, 2.5, 4.0, 10.0])),{})
####################################
hd2('Sorting, searching, and counting')
hd3('Sorting')
r('sort', (np.array([1,3,1,2.]),), {})
m('lexsort')
m('argsort')
m('msort')
m('sort_complex')
m('partition')
m('argpartition')
# sort(a[, axis, kind, order]) Return a sorted copy of an array.
# lexsort(keys[, axis]) Perform an indirect sort using a sequence of keys.
# argsort(a[, axis, kind, order]) Returns the indices that would sort an array.
# ndarray.sort([axis, kind, order]) Sort an array, in-place.
# msort(a) Return a copy of an array sorted along the first axis.
# sort_complex(a) Sort a complex array using the real part first, then the imaginary part.
# partition(a, kth[, axis, kind, order]) Return a partitioned copy of an array.
# argpartition(a, kth[, axis, kind, order]) Perform an indirect partition along the given axis using the algorithm specified by the kind keyword.
a5 = np.arange(5)
hd3('Searching')
r('argmax', (a5,), {})
r('nanargmax', (a5,), {})
r('argmin', (a5,), {})
r('nanargmin', (a5,), {})
r('argwhere', (a5,), {})
r('nonzero', (a5,), {})
r('flatnonzero', (a5,), {})
r('where', (a5>1,), {})
r('searchsorted', (a5,a5), {})
r('extract', (lambda x : x > 1, a5), {})
# argmax(a[, axis]) Indices of the maximum values along an axis.
# nanargmax(a[, axis]) Return the indices of the maximum values in the specified axis ignoring
# argmin(a[, axis]) Return the indices of the minimum values along an axis.
# nanargmin(a[, axis]) Return the indices of the minimum values in the specified axis ignoring
# argwhere(a) Find the indices of array elements that are non-zero, grouped by element.
# nonzero(a) Return the indices of the elements that are non-zero.
# flatnonzero(a) Return indices that are non-zero in the flattened version of a.
# where(condition, [x, y]) Return elements, either from x or y, depending on condition.
# searchsorted(a, v[, side, sorter]) Find indices where elements should be inserted to maintain order.
# extract(condition, arr) Return the elements of an array that satisfy some condition.
hd3('Counting')
r('count_nonzero', (a5,), {})
#count_nonzero(a) Counts the number of non-zero values in the array a.
# histogram(a[, bins, range, normed, weights, ...]) Compute the histogram of a set of data.
# histogram2d(x, y[, bins, range, normed, weights]) Compute the bi-dimensional histogram of two data samples.
# histogramdd(sample[, bins, range, normed, ...]) Compute the multidimensional histogram of some data.
# bincount(x[, weights, minlength]) Count number of occurrences of each value in array of non-negative ints.
# digitize(x, bins[, right]) Return the indices of the bins to which each value in input array belongs.
global src
src = '<html><body><table border=1>' + src + '</table></body></html>'
open(join(split(__file__)[0], 'api_compatibility.html'), 'w').write(src)
print('passed %d, not passed %d' % (num_passed, num_not_passed))
if __name__ == '__main__':
global which_passed
main()
print(' '.join(which_passed))
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