| | """ |
| | Author(s): Matthew Loper |
| | |
| | See LICENCE.txt for licensing and contact information. |
| | """ |
| |
|
| |
|
| | from . import ch |
| | import numpy as np |
| | from os.path import join, split |
| | from six import StringIO |
| | import numpy |
| | import chumpy |
| | from six.moves import cPickle as pickle |
| |
|
| | src = '' |
| | num_passed = 0 |
| | num_not_passed = 0 |
| | which_passed = [] |
| |
|
| | def r(fn_name, args_req, args_opt, nplib=numpy, chlib=chumpy): |
| | global num_passed, num_not_passed |
| | result = [None, None] |
| | |
| | for lib in [nplib, chlib]: |
| |
|
| | |
| | |
| | if lib is nplib: |
| | fn = getattr(lib, fn_name) |
| | else: |
| | try: |
| | fn = getattr(lib, fn_name) |
| | except AttributeError: |
| | result[0] = 'missing' |
| | result[1] = 'missing' |
| | num_not_passed += 1 |
| | continue |
| | try: |
| | if isinstance(args_req, dict): |
| | _ = fn(**args_req) |
| | else: |
| | _ = fn(*args_req) |
| | if lib is chlib: |
| | result[0] = 'passed' |
| | num_passed += 1 |
| | global which_passed |
| | which_passed.append(fn_name) |
| | |
| | if hasattr(_, 'dterms'): |
| | try: |
| | _.r |
| | |
| | try: |
| | pickle.dumps(_) |
| | except: |
| | result[0] += ' (but unpickleable!)' |
| | except: |
| | import pdb; pdb.set_trace() |
| | result[0] += '(but cant get result!)' |
| | except Exception as e: |
| | if e is TypeError: |
| | import pdb; pdb.set_trace() |
| | if lib is nplib: |
| | import pdb; pdb.set_trace() |
| | else: |
| | num_not_passed += 1 |
| | |
| | |
| | result[0] = e.__class__.__name__ |
| | |
| | try: |
| | if isinstance(args_req, dict): |
| | fn(**dict(list(args_req.items()) + list(args_opt.items()))) |
| | else: |
| | fn(*args_req, **args_opt) |
| | if lib is chlib: |
| | result[1] = 'passed' |
| | except Exception as e: |
| | if e is TypeError: |
| | import pdb; pdb.set_trace() |
| | result[1] = e.__class__.__name__ |
| | |
| | |
| | |
| | append(fn_name, result[0], result[1]) |
| | |
| | def make_row(a, b, c, b_color, c_color): |
| | global src |
| | src += '<tr><td>%s</td><td style="background-color:%s">%s</td><td style="background-color:%s">%s</td></tr>' % (a,b_color, b,c_color, c) |
| | |
| | def append(a, b, c): |
| | global src |
| | b_color = 'white' |
| | c_color = 'white' |
| |
|
| | b = b.replace('NotImplementedError', 'not yet implemented') |
| | c = c.replace('NotImplementedError', 'not yet implemented') |
| | b = b.replace('WontImplement', "won't implement") |
| | c = c.replace('WontImplement', "won't implement") |
| | lookup = { |
| | 'passed': 'lightgreen', |
| | "won't implement": 'lightgray', |
| | 'untested': 'lightyellow', |
| | 'not yet implemented': 'pink' |
| | } |
| | |
| | b_color = lookup[b] if b in lookup else 'white' |
| | c_color = lookup[c] if c in lookup else 'white' |
| |
|
| | print('%s: %s, %s' % (a,b,c)) |
| | make_row(a, b, c, b_color, c_color) |
| |
|
| | def m(s): |
| | append(s, 'unknown', 'unknown') |
| | global num_not_passed |
| | num_not_passed += 1 |
| |
|
| | def hd3(s): |
| | global src |
| | src += '<tr><td colspan=3><h3 style="margin-bottom:0;">%s</h3></td></tr>' % (s,) |
| |
|
| | def hd2(s): |
| | global src |
| | src += '</table><br/><br/><table border=1>' |
| | src += '<tr><td colspan=3 style="background-color:black;color:white"><h2 style="margin-bottom:0;">%s</h2></td></tr>' % (s,) |
| | |
| | def main(): |
| | |
| | |
| | |
| | |
| | hd2('Array Creation Routines') |
| | |
| | hd3('Ones and zeros') |
| |
|
| | r('empty', {'shape': (2,4,2)}, {'dtype': np.uint8, 'order': 'C'}) |
| | r('empty_like', {'prototype': np.empty((2,4,2))}, {'dtype': np.float64, 'order': 'C'}) |
| | r('eye', {'N': 10}, {'M': 5, 'k': 0, 'dtype': np.float64}) |
| | r('identity', {'n': 10}, {'dtype': np.float64}) |
| | r('ones', {'shape': (2,4,2)}, {'dtype': np.uint8, 'order': 'C'}) |
| | r('ones_like', {'a': np.empty((2,4,2))}, {'dtype': np.float64, 'order': 'C'}) |
| | r('zeros', {'shape': (2,4,2)}, {'dtype': np.uint8, 'order': 'C'}) |
| | r('zeros_like', {'a': np.empty((2,4,2))}, {'dtype': np.float64, 'order': 'C'}) |
| | |
| | hd3('From existing data') |
| | r('array', {'object': [1,2,3]}, {'dtype': np.float64, 'order': 'C', 'subok': False, 'ndmin': 2}) |
| | r('asarray', {'a': np.array([1,2,3])}, {'dtype': np.float64, 'order': 'C'}) |
| | r('asanyarray', {'a': np.array([1,2,3])}, {'dtype': np.float64, 'order': 'C'}) |
| | r('ascontiguousarray', {'a': np.array([1,2,3])}, {'dtype': np.float64}) |
| | r('asmatrix', {'data': np.array([1,2,3])}, {'dtype': np.float64}) |
| | r('copy', (np.array([1,2,3]),), {}) |
| | r('frombuffer', {'buffer': np.array([1,2,3])}, {}) |
| | m('fromfile') |
| | r('fromfunction', {'function': lambda i, j: i + j, 'shape': (3, 3)}, {'dtype': np.float64}) |
| | |
| | |
| | r('fromiter', {'iter': [1,2,3,4], 'dtype': np.float64}, {'count': 2}) |
| | r('fromstring', {'string': '\x01\x02', 'dtype': np.uint8}, {}) |
| | r('loadtxt', {'fname': StringIO("0 1\n2 3")}, {}) |
| |
|
| | hd3('Creating record arrays (wont be implemented)') |
| | hd3('Creating character arrays (wont be implemented)') |
| |
|
| | hd3('Numerical ranges') |
| | r('arange', {'start': 0, 'stop': 10}, {'step': 2, 'dtype': np.float64}) |
| | r('linspace', {'start': 0, 'stop': 10}, {'num': 2, 'endpoint': 10, 'retstep': 1}) |
| | r('logspace', {'start': 0, 'stop': 10}, {'num': 2, 'endpoint': 10, 'base': 1}) |
| | r('meshgrid', ([1,2,3], [4,5,6]), {}) |
| | m('mgrid') |
| | m('ogrid') |
| | |
| | hd3('Building matrices') |
| | r('diag', {'v': np.arange(9).reshape((3,3))}, {'k': 0}) |
| | r('diagflat', {'v': [[1,2], [3,4]]}, {}) |
| | r('tri', {'N': 3}, {'M': 5, 'k': 2, 'dtype': np.float64}) |
| | r('tril', {'m': [[1,2,3],[4,5,6],[7,8,9],[10,11,12]]}, {'k': -1}) |
| | r('triu', {'m': [[1,2,3],[4,5,6],[7,8,9],[10,11,12]]}, {'k': -1}) |
| | r('vander', {'x': np.array([1, 2, 3, 5])}, {'N': 3}) |
| | |
| | |
| | hd2('Array manipulation routines') |
| | |
| | hd3('Basic operations') |
| | r('copyto', {'dst': np.eye(3), 'src': np.eye(3)}, {}) |
| | |
| | hd3('Changing array shape') |
| | r('reshape', {'a': np.eye(3), 'newshape': (9,)}, {'order' : 'C'}) |
| | r('ravel', {'a': np.eye(3)}, {'order' : 'C'}) |
| | m('flat') |
| | m('flatten') |
| | |
| | hd3('Transpose-like operations') |
| | r('rollaxis', {'a': np.ones((3,4,5,6)), 'axis': 3}, {'start': 0}) |
| | r('swapaxes', {'a': np.array([[1,2,3]]), 'axis1': 0, 'axis2': 1}, {}) |
| | r('transpose', {'a': np.arange(4).reshape((2,2))}, {'axes': (1,0)}) |
| | |
| | hd3('Changing number of dimensions') |
| | r('atleast_1d', (np.eye(3),), {}) |
| | r('atleast_2d', (np.eye(3),), {}) |
| | r('atleast_3d', (np.eye(3),), {}) |
| | m('broadcast') |
| | m('broadcast_arrays') |
| | r('expand_dims', (np.array([1,2]),2), {}) |
| | r('squeeze', {'a': (np.array([[[1,2,3]]]))}, {}) |
| | |
| | hd3('Changing kind of array') |
| | r('asarray', {'a': np.array([1,2,3])}, {'dtype': np.float64, 'order': 'C'}) |
| | r('asanyarray', {'a': np.array([1,2,3])}, {'dtype': np.float64, 'order': 'C'}) |
| | r('asmatrix', {'data': np.array([1,2,3])}, {}) |
| | r('asfarray', {'a': np.array([1,2,3])}, {}) |
| | r('asfortranarray', {'a': np.array([1,2,3])}, {}) |
| | r('asscalar', {'a': np.array([24])}, {}) |
| | r('require', {'a': np.array([24])}, {}) |
| | |
| | hd3('Joining arrays') |
| | m('column_stack') |
| | r('concatenate', ((np.eye(3), np.eye(3)),1), {}) |
| | r('dstack', ((np.eye(3), np.eye(3)),), {}) |
| | r('hstack', ((np.eye(3), np.eye(3)),), {}) |
| | r('vstack', ((np.eye(3), np.eye(3)),), {}) |
| |
|
| | hd3('Splitting arrays') |
| | m('array_split') |
| | m('dsplit') |
| | m('hsplit') |
| | m('split') |
| | m('vsplit') |
| |
|
| | hd3('Tiling arrays') |
| | r('tile', (np.array([0, 1, 2]),2), {}) |
| | r('repeat', (np.array([[1,2],[3,4]]), 3), {'axis': 1}) |
| |
|
| | hd3('Adding and removing elements') |
| | m('delete') |
| | m('insert') |
| | m('append') |
| | m('resize') |
| | m('trim_zeros') |
| | m('unique') |
| | |
| | hd3('Rearranging elements') |
| | r('fliplr', (np.eye(3),), {}) |
| | r('flipud', (np.eye(3),), {}) |
| | r('reshape', {'a': np.eye(3), 'newshape': (9,)}, {'order' : 'C'}) |
| | r('roll', (np.arange(10), 2), {}) |
| | r('rot90', (np.arange(4).reshape((2,2)),), {}) |
| | |
| | |
| | hd2('Linear algebra (numpy.linalg)') |
| | |
| | extra_args = {'nplib': numpy.linalg, 'chlib': ch.linalg} |
| | |
| | hd3('Matrix and dot products') |
| | r('dot', {'a': np.eye(3), 'b': np.eye(3)}, {}) |
| | r('dot', {'a': np.eye(3).ravel(), 'b': np.eye(3).ravel()}, {}) |
| | r('vdot', (np.eye(3).ravel(), np.eye(3).ravel()), {}) |
| | r('inner', (np.eye(3).ravel(), np.eye(3).ravel()), {}) |
| | r('outer', (np.eye(3).ravel(), np.eye(3).ravel()), {}) |
| | r('tensordot', {'a': np.eye(3), 'b': np.eye(3)}, {}) |
| | m('einsum') |
| | r('matrix_power', {'M': np.eye(3), 'n': 2}, {}, **extra_args) |
| | r('kron', {'a': np.eye(3), 'b': np.eye(3)}, {}) |
| | |
| | hd3('Decompositions') |
| | r('cholesky', {'a': np.eye(3)}, {}, **extra_args) |
| | r('qr', {'a': np.eye(3)}, {}, **extra_args) |
| | r('svd', (np.eye(3),), {}, **extra_args) |
| | |
| | hd3('Matrix eigenvalues') |
| | r('eig', (np.eye(3),), {}, **extra_args) |
| | r('eigh', (np.eye(3),), {}, **extra_args) |
| | r('eigvals', (np.eye(3),), {}, **extra_args) |
| | r('eigvalsh', (np.eye(3),), {}, **extra_args) |
| | |
| | hd3('Norms and other numbers') |
| | r('norm', (np.eye(3),), {}, **extra_args) |
| | r('cond', (np.eye(3),), {}, **extra_args) |
| | r('det', (np.eye(3),), {}, **extra_args) |
| | r('slogdet', (np.eye(3),), {}, **extra_args) |
| | r('trace', (np.eye(3),), {}) |
| | |
| | hd3('Solving equations and inverting matrices') |
| | r('solve', (np.eye(3),np.ones(3)), {}, **extra_args) |
| | r('tensorsolve', (np.eye(3),np.ones(3)), {}, **extra_args) |
| | r('lstsq', (np.eye(3),np.ones(3)), {}, **extra_args) |
| | r('inv', (np.eye(3),), {}, **extra_args) |
| | r('pinv', (np.eye(3),), {}, **extra_args) |
| | r('tensorinv', (np.eye(4*6).reshape((4,6,8,3)),), {'ind': 2}, **extra_args) |
| | |
| | hd2('Mathematical functions') |
| |
|
| | hd3('Trigonometric functions') |
| | r('sin', (np.arange(3),), {}) |
| | r('cos', (np.arange(3),), {}) |
| | r('tan', (np.arange(3),), {}) |
| | r('arcsin', (np.arange(3)/3.,), {}) |
| | r('arccos', (np.arange(3)/3.,), {}) |
| | r('arctan', (np.arange(3)/3.,), {}) |
| | r('hypot', (np.arange(3),np.arange(3)), {}) |
| | r('arctan2', (np.arange(3),np.arange(3)), {}) |
| | r('degrees', (np.arange(3),), {}) |
| | r('radians', (np.arange(3),), {}) |
| | r('unwrap', (np.arange(3),), {}) |
| | r('unwrap', (np.arange(3),), {}) |
| | r('deg2rad', (np.arange(3),), {}) |
| | r('rad2deg', (np.arange(3),), {}) |
| | |
| | hd3('Hyperbolic functions') |
| | r('sinh', (np.arange(3),), {}) |
| | r('cosh', (np.arange(3),), {}) |
| | r('tanh', (np.arange(3),), {}) |
| | r('arcsinh', (np.arange(3)/9.,), {}) |
| | r('arccosh', (-np.arange(3)/9.,), {}) |
| | r('arctanh', (np.arange(3)/9.,), {}) |
| | |
| | hd3('Rounding') |
| | r('around', (np.arange(3),), {}) |
| | r('round_', (np.arange(3),), {}) |
| | r('rint', (np.arange(3),), {}) |
| | r('fix', (np.arange(3),), {}) |
| | r('floor', (np.arange(3),), {}) |
| | r('ceil', (np.arange(3),), {}) |
| | r('trunc', (np.arange(3),), {}) |
| | |
| | hd3('Sums, products, differences') |
| | r('prod', (np.arange(3),), {}) |
| | r('sum', (np.arange(3),), {}) |
| | r('nansum', (np.arange(3),), {}) |
| | r('cumprod', (np.arange(3),), {}) |
| | r('cumsum', (np.arange(3),), {}) |
| | r('diff', (np.arange(3),), {}) |
| | r('ediff1d', (np.arange(3),), {}) |
| | r('gradient', (np.arange(3),), {}) |
| | r('cross', (np.arange(3), np.arange(3)), {}) |
| | r('trapz', (np.arange(3),), {}) |
| | |
| | hd3('Exponents and logarithms') |
| | r('exp', (np.arange(3),), {}) |
| | r('expm1', (np.arange(3),), {}) |
| | r('exp2', (np.arange(3),), {}) |
| | r('log', (np.arange(3),), {}) |
| | r('log10', (np.arange(3),), {}) |
| | r('log2', (np.arange(3),), {}) |
| | r('log1p', (np.arange(3),), {}) |
| | r('logaddexp', (np.arange(3), np.arange(3)), {}) |
| | r('logaddexp2', (np.arange(3), np.arange(3)), {}) |
| | |
| | hd3('Other special functions') |
| | r('i0', (np.arange(3),), {}) |
| | r('sinc', (np.arange(3),), {}) |
| | |
| | hd3('Floating point routines') |
| | r('signbit', (np.arange(3),), {}) |
| | r('copysign', (np.arange(3), np.arange(3)), {}) |
| | r('frexp', (np.arange(3),), {}) |
| | r('ldexp', (np.arange(3), np.arange(3)), {}) |
| | |
| | hd3('Arithmetic operations') |
| | r('add', (np.arange(3), np.arange(3)), {}) |
| | r('reciprocal', (np.arange(3),), {}) |
| | r('negative', (np.arange(3),), {}) |
| | r('multiply', (np.arange(3), np.arange(3)), {}) |
| | r('divide', (np.arange(3), np.arange(3)), {}) |
| | r('power', (np.arange(3), np.arange(3)), {}) |
| | r('subtract', (np.arange(3), np.arange(3)), {}) |
| | r('true_divide', (np.arange(3), np.arange(3)), {}) |
| | r('floor_divide', (np.arange(3), np.arange(3)), {}) |
| | r('fmod', (np.arange(3), np.arange(3)), {}) |
| | r('mod', (np.arange(3), np.arange(3)), {}) |
| | r('modf', (np.arange(3),), {}) |
| | r('remainder', (np.arange(3), np.arange(3)), {}) |
| | |
| | hd3('Handling complex numbers') |
| | m('angle') |
| | m('real') |
| | m('imag') |
| | m('conj') |
| | |
| | hd3('Miscellaneous') |
| | r('convolve', (np.arange(3), np.arange(3)), {}) |
| | r('clip', (np.arange(3), 0, 2), {}) |
| | r('sqrt', (np.arange(3),), {}) |
| | r('square', (np.arange(3),), {}) |
| | r('absolute', (np.arange(3),), {}) |
| | r('fabs', (np.arange(3),), {}) |
| | r('sign', (np.arange(3),), {}) |
| | r('maximum', (np.arange(3), np.arange(3)), {}) |
| | r('minimum', (np.arange(3), np.arange(3)), {}) |
| | r('fmax', (np.arange(3), np.arange(3)), {}) |
| | r('fmin', (np.arange(3), np.arange(3)), {}) |
| | r('nan_to_num', (np.arange(3),), {}) |
| | r('real_if_close', (np.arange(3),), {}) |
| | r('interp', (2.5, [1,2,3], [3,2,0]), {}) |
| | |
| | extra_args = {'nplib': numpy.random, 'chlib': ch.random} |
| | |
| | hd2('Random sampling (numpy.random)') |
| | hd3('Simple random data') |
| | r('rand', (3,), {}, **extra_args) |
| | r('randn', (3,), {}, **extra_args) |
| | r('randint', (3,), {}, **extra_args) |
| | r('random_integers', (3,), {}, **extra_args) |
| | r('random_sample', (3,), {}, **extra_args) |
| | r('random', (3,), {}, **extra_args) |
| | r('ranf', (3,), {}, **extra_args) |
| | r('sample', (3,), {}, **extra_args) |
| | r('choice', (np.ones(3),), {}, **extra_args) |
| | r('bytes', (3,), {}, **extra_args) |
| | |
| | hd3('Permutations') |
| | r('shuffle', (np.ones(3),), {}, **extra_args) |
| | r('permutation', (3,), {}, **extra_args) |
| | |
| | hd3('Distributions (these all pass)') |
| | r('beta', (.5, .5), {}, **extra_args) |
| | r('binomial', (.5, .5), {}, **extra_args) |
| | r('chisquare', (.5,), {}, **extra_args) |
| | r('dirichlet', ((10, 5, 3), 20,), {}, **extra_args) |
| | r('exponential', [], {}, **extra_args) |
| | r('f', [1,48,1000], {}, **extra_args) |
| | r('gamma', [.5], {}, **extra_args) |
| | make_row('...AND 28 OTHERS...', 'passed', 'passed', 'lightgreen', 'lightgreen') |
| | |
| | |
| | hd3('Random generator') |
| | r('seed', [], {}, **extra_args) |
| | r('get_state', [], {}, **extra_args) |
| | r('set_state', [np.random.get_state()], {}, **extra_args) |
| | |
| | |
| | hd2('Statistics') |
| | hd3('Order statistics') |
| | r('amin', (np.eye(3),),{}) |
| | r('amax', (np.eye(3),),{}) |
| | r('nanmin', (np.eye(3),),{}) |
| | r('nanmax', (np.eye(3),),{}) |
| | r('ptp', (np.eye(3),),{}) |
| | r('percentile', (np.eye(3),50),{}) |
| |
|
| | hd3('Averages and variance') |
| | r('median', (np.eye(3),),{}) |
| | r('average', (np.eye(3),),{}) |
| | r('mean', (np.eye(3),),{}) |
| | r('std', (np.eye(3),),{}) |
| | r('var', (np.eye(3),),{}) |
| | r('nanmean', (np.eye(3),),{}) |
| | r('nanstd', (np.eye(3),),{}) |
| | r('nanvar', (np.eye(3),),{}) |
| | |
| |
|
| | hd3('Correlating') |
| | r('corrcoef', (np.eye(3),),{}) |
| | r('correlate', ([1, 2, 3], [0, 1, 0.5]),{}) |
| | r('cov', (np.eye(3),),{}) |
| | |
| | hd3('Histograms') |
| | r('histogram', (np.eye(3),),{}) |
| | r('histogram2d', (np.eye(3).ravel(),np.eye(3).ravel()),{}) |
| | r('histogramdd', (np.eye(3).ravel(),),{}) |
| | r('bincount', (np.asarray(np.eye(3).ravel(), np.uint32),),{}) |
| | r('digitize', (np.array([0.2, 6.4, 3.0, 1.6]), np.array([0.0, 1.0, 2.5, 4.0, 10.0])),{}) |
| | |
| | |
| | hd2('Sorting, searching, and counting') |
| | |
| | hd3('Sorting') |
| | r('sort', (np.array([1,3,1,2.]),), {}) |
| | m('lexsort') |
| | m('argsort') |
| | m('msort') |
| | m('sort_complex') |
| | m('partition') |
| | m('argpartition') |
| | |
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| | |
| | a5 = np.arange(5) |
| |
|
| | hd3('Searching') |
| | r('argmax', (a5,), {}) |
| | r('nanargmax', (a5,), {}) |
| | r('argmin', (a5,), {}) |
| | r('nanargmin', (a5,), {}) |
| | r('argwhere', (a5,), {}) |
| | r('nonzero', (a5,), {}) |
| | r('flatnonzero', (a5,), {}) |
| | r('where', (a5>1,), {}) |
| | r('searchsorted', (a5,a5), {}) |
| | r('extract', (lambda x : x > 1, a5), {}) |
| |
|
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| | hd3('Counting') |
| | r('count_nonzero', (a5,), {}) |
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|
| | |
| | global src |
| | src = '<html><body><table border=1>' + src + '</table></body></html>' |
| | open(join(split(__file__)[0], 'api_compatibility.html'), 'w').write(src) |
| | |
| | print('passed %d, not passed %d' % (num_passed, num_not_passed)) |
| | |
| |
|
| |
|
| | if __name__ == '__main__': |
| | global which_passed |
| | main() |
| | print(' '.join(which_passed)) |
| |
|