| | """ |
| | Author(s): Matthew Loper |
| | |
| | See LICENCE.txt for licensing and contact information. |
| | """ |
| | import scipy.sparse as sp |
| | import numpy as np |
| |
|
| | def row(A): |
| | return A.reshape((1, -1)) |
| |
|
| |
|
| | def col(A): |
| | return A.reshape((-1, 1)) |
| |
|
| | class timer(object): |
| | def time(self): |
| | import time |
| | return time.time() |
| | def __init__(self): |
| | self._elapsed = 0 |
| | self._start = self.time() |
| | def __call__(self): |
| | if self._start is not None: |
| | return self._elapsed + self.time() - self._start |
| | else: |
| | return self._elapsed |
| | def pause(self): |
| | assert self._start is not None |
| | self._elapsed += self.time() - self._start |
| | self._start = None |
| | def resume(self): |
| | assert self._start is None |
| | self._start = self.time() |
| |
|
| | def dfs_do_func_on_graph(node, func, *args, **kwargs): |
| | ''' |
| | invoke func on each node of the dr graph |
| | ''' |
| | for _node in node.tree_iterator(): |
| | func(_node, *args, **kwargs) |
| |
|
| |
|
| | def sparse_is_desireable(lhs, rhs): |
| | ''' |
| | Examines a pair of matrices and determines if the result of their multiplication should be sparse or not. |
| | ''' |
| | return False |
| | if len(lhs.shape) == 1: |
| | return False |
| | else: |
| | lhs_rows, lhs_cols = lhs.shape |
| |
|
| | if len(rhs.shape) == 1: |
| | rhs_rows = 1 |
| | rhs_cols = rhs.size |
| | else: |
| | rhs_rows, rhs_cols = rhs.shape |
| |
|
| | result_size = lhs_rows * rhs_cols |
| |
|
| | if sp.issparse(lhs) and sp.issparse(rhs): |
| | return True |
| | elif sp.issparse(lhs): |
| | lhs_zero_rows = lhs_rows - np.unique(lhs.nonzero()[0]).size |
| | rhs_zero_cols = np.all(rhs==0, axis=0).sum() |
| | |
| | elif sp.issparse(rhs): |
| | lhs_zero_rows = np.all(lhs==0, axis=1).sum() |
| | rhs_zero_cols = rhs_cols- np.unique(rhs.nonzero()[1]).size |
| | else: |
| | lhs_zero_rows = np.all(lhs==0, axis=1).sum() |
| | rhs_zero_cols = np.all(rhs==0, axis=0).sum() |
| |
|
| | num_zeros = lhs_zero_rows * rhs_cols + rhs_zero_cols * lhs_rows - lhs_zero_rows * rhs_zero_cols |
| |
|
| | |
| | return (float(num_zeros) / float(size)) >= 0.5 |
| |
|
| |
|
| | def convert_inputs_to_sparse_if_necessary(lhs, rhs): |
| | ''' |
| | This function checks to see if a sparse output is desireable given the inputs and if so, casts the inputs to sparse in order to make it so. |
| | ''' |
| | if not sp.issparse(lhs) or not sp.issparse(rhs): |
| | if sparse_is_desireable(lhs, rhs): |
| | if not sp.issparse(lhs): |
| | lhs = sp.csc_matrix(lhs) |
| | |
| | if not sp.issparse(rhs): |
| | rhs = sp.csc_matrix(rhs) |
| | |
| | return lhs, rhs |
| |
|