| | import cupy |
| | import cupyx.scipy.fft |
| |
|
| | from cupy import _core |
| | from cupy._core import _routines_math as _math |
| | from cupy._core import fusion |
| | from cupy.lib import stride_tricks |
| |
|
| | import numpy |
| |
|
| |
|
| | _dot_kernel = _core.ReductionKernel( |
| | 'T x1, T x2', |
| | 'T y', |
| | 'x1 * x2', |
| | 'a + b', |
| | 'y = a', |
| | '0', |
| | 'dot_product' |
| | ) |
| |
|
| |
|
| | def _choose_conv_method(in1, in2, mode): |
| | if in1.ndim != 1 or in2.ndim != 1: |
| | raise NotImplementedError('Only 1d inputs are supported currently') |
| |
|
| | if in1.dtype.kind in 'bui' or in2.dtype.kind in 'bui': |
| | return 'direct' |
| |
|
| | if _fftconv_faster(in1, in2, mode): |
| | return 'fft' |
| |
|
| | return 'direct' |
| |
|
| |
|
| | def _fftconv_faster(x, h, mode): |
| | """ |
| | .. seealso:: :func: `scipy.signal._signaltools._fftconv_faster` |
| | |
| | """ |
| | |
| | return True |
| |
|
| |
|
| | def convolve(a, v, mode='full'): |
| | """Returns the discrete, linear convolution of two one-dimensional sequences. |
| | |
| | Args: |
| | a (cupy.ndarray): first 1-dimensional input. |
| | v (cupy.ndarray): second 1-dimensional input. |
| | mode (str, optional): `valid`, `same`, `full` |
| | |
| | Returns: |
| | cupy.ndarray: Discrete, linear convolution of a and v. |
| | |
| | .. seealso:: :func:`numpy.convolve` |
| | |
| | """ |
| | if a.size == 0: |
| | raise ValueError('a cannot be empty') |
| | if v.size == 0: |
| | raise ValueError('v cannot be empty') |
| | if v.ndim > 1: |
| | raise ValueError('v cannot be multidimensional array') |
| | if v.size > a.size: |
| | a, v = v, a |
| | a = a.ravel() |
| | v = v.ravel() |
| |
|
| | method = _choose_conv_method(a, v, mode) |
| | if method == 'direct': |
| | out = _dot_convolve(a, v, mode) |
| | elif method == 'fft': |
| | out = _fft_convolve(a, v, mode) |
| | else: |
| | raise ValueError('Unsupported method') |
| | return out |
| |
|
| |
|
| | def _fft_convolve(a1, a2, mode): |
| |
|
| | offset = 0 |
| | if a1.shape[-1] < a2.shape[-1]: |
| | a1, a2 = a2, a1 |
| | offset = 1 - a2.shape[-1] % 2 |
| |
|
| | |
| | if a1.dtype.kind == 'c' or a2.dtype.kind == 'c': |
| | fft, ifft = cupy.fft.fft, cupy.fft.ifft |
| | else: |
| | fft, ifft = cupy.fft.rfft, cupy.fft.irfft |
| |
|
| | dtype = cupy.result_type(a1, a2) |
| | n1, n2 = a1.shape[-1], a2.shape[-1] |
| | out_size = cupyx.scipy.fft.next_fast_len(n1 + n2 - 1) |
| | fa1 = fft(a1, out_size) |
| | fa2 = fft(a2, out_size) |
| | out = ifft(fa1 * fa2, out_size) |
| |
|
| | if mode == 'full': |
| | start, end = 0, n1 + n2 - 1 |
| | elif mode == 'same': |
| | start = (n2 - 1) // 2 + offset |
| | end = start + n1 |
| | elif mode == 'valid': |
| | start, end = n2 - 1, n1 |
| | else: |
| | raise ValueError( |
| | 'acceptable mode flags are `valid`, `same`, or `full`.') |
| |
|
| | out = out[..., start:end] |
| |
|
| | if dtype.kind in 'iu': |
| | out = cupy.around(out) |
| |
|
| | return out.astype(dtype, copy=False) |
| |
|
| |
|
| | def _dot_convolve(a1, a2, mode): |
| |
|
| | offset = 0 |
| | if a1.size < a2.size: |
| | a1, a2 = a2, a1 |
| | offset = 1 - a2.size % 2 |
| |
|
| | dtype = cupy.result_type(a1, a2) |
| | n1, n2 = a1.size, a2.size |
| | a1 = a1.astype(dtype, copy=False) |
| | a2 = a2.astype(dtype, copy=False) |
| |
|
| | if mode == 'full': |
| | out_size = n1 + n2 - 1 |
| | a1 = cupy.pad(a1, n2 - 1) |
| | elif mode == 'same': |
| | out_size = n1 |
| | pad_size = (n2 - 1) // 2 + offset |
| | a1 = cupy.pad(a1, (n2 - 1 - pad_size, pad_size)) |
| | elif mode == 'valid': |
| | out_size = n1 - n2 + 1 |
| |
|
| | stride = a1.strides[0] |
| | a1 = stride_tricks.as_strided(a1, (out_size, n2), (stride, stride)) |
| | output = _dot_kernel(a1, a2[::-1], axis=1) |
| | return output |
| |
|
| |
|
| | def clip(a, a_min, a_max, out=None): |
| | """Clips the values of an array to a given interval. |
| | |
| | This is equivalent to ``maximum(minimum(a, a_max), a_min)``, while this |
| | function is more efficient. |
| | |
| | Args: |
| | a (cupy.ndarray): The source array. |
| | a_min (scalar, cupy.ndarray or None): The left side of the interval. |
| | When it is ``None``, it is ignored. |
| | a_max (scalar, cupy.ndarray or None): The right side of the interval. |
| | When it is ``None``, it is ignored. |
| | out (cupy.ndarray): Output array. |
| | |
| | Returns: |
| | cupy.ndarray: Clipped array. |
| | |
| | .. seealso:: :func:`numpy.clip` |
| | |
| | Notes |
| | ----- |
| | When `a_min` is greater than `a_max`, `clip` returns an |
| | array in which all values are equal to `a_max`. |
| | """ |
| | if fusion._is_fusing(): |
| | return fusion._call_ufunc(_math.clip, |
| | a, a_min, a_max, out=out) |
| |
|
| | |
| | return a.clip(a_min, a_max, out=out) |
| |
|
| |
|
| | |
| | |
| | sqrt = sqrt_fixed = _core.sqrt |
| |
|
| |
|
| | cbrt = _core.create_ufunc( |
| | 'cupy_cbrt', |
| | ('e->e', 'f->f', 'd->d'), |
| | 'out0 = cbrt(in0)', |
| | doc='''Elementwise cube root function. |
| | |
| | .. seealso:: :data:`numpy.cbrt` |
| | |
| | ''') |
| |
|
| |
|
| | square = _core.create_ufunc( |
| | 'cupy_square', |
| | ('b->b', 'B->B', 'h->h', 'H->H', 'i->i', 'I->I', 'l->l', 'L->L', 'q->q', |
| | 'Q->Q', 'e->e', 'f->f', 'd->d', 'F->F', 'D->D'), |
| | 'out0 = in0 * in0', |
| | doc='''Elementwise square function. |
| | |
| | .. seealso:: :data:`numpy.square` |
| | |
| | ''') |
| |
|
| |
|
| | absolute = _core.absolute |
| |
|
| |
|
| | fabs = _core.create_ufunc( |
| | 'cupy_fabs', |
| | ('e->e', 'f->f', 'd->d'), |
| | 'out0 = abs(in0)', |
| | doc='''Calculates absolute values element-wise. |
| | Only real values are handled. |
| | |
| | .. seealso:: :data:`numpy.fabs` |
| | |
| | ''') |
| |
|
| |
|
| | _unsigned_sign = 'out0 = in0 > 0' |
| | _complex_sign = ''' |
| | if (in0.real() == 0) { |
| | out0 = (in0.imag() > 0) - (in0.imag() < 0); |
| | } else { |
| | out0 = (in0.real() > 0) - (in0.real() < 0); |
| | } |
| | ''' |
| | sign = _core.create_ufunc( |
| | 'cupy_sign', |
| | ('b->b', ('B->B', _unsigned_sign), 'h->h', ('H->H', _unsigned_sign), |
| | 'i->i', ('I->I', _unsigned_sign), 'l->l', ('L->L', _unsigned_sign), |
| | 'q->q', ('Q->Q', _unsigned_sign), 'e->e', 'f->f', 'd->d', |
| | ('F->F', _complex_sign), ('D->D', _complex_sign)), |
| | 'out0 = (in0 > 0) - (in0 < 0)', |
| | doc='''Elementwise sign function. |
| | |
| | It returns -1, 0, or 1 depending on the sign of the input. |
| | |
| | .. seealso:: :data:`numpy.sign` |
| | |
| | ''') |
| |
|
| |
|
| | heaviside = _core.create_ufunc( |
| | 'cupy_heaviside', |
| | ('ee->e', 'ff->f', 'dd->d'), |
| | ''' |
| | if (isnan(in0)) { |
| | out0 = in0; |
| | } else if (in0 == 0) { |
| | out0 = in1; |
| | } else { |
| | out0 = (in0 > 0); |
| | } |
| | ''', |
| | doc='''Compute the Heaviside step function. |
| | |
| | .. seealso:: :data:`numpy.heaviside` |
| | |
| | ''' |
| | ) |
| |
|
| |
|
| | _float_preamble = ''' |
| | #ifndef NAN |
| | #define NAN __int_as_float(0x7fffffff) |
| | #endif |
| | ''' |
| | _float_maximum = ('out0 = (isnan(in0) | isnan(in1)) ? out0_type(NAN) : ' |
| | 'out0_type(max(in0, in1))') |
| | maximum = _core.create_ufunc( |
| | 'cupy_maximum', |
| | ('??->?', 'bb->b', 'BB->B', 'hh->h', 'HH->H', 'ii->i', 'II->I', 'll->l', |
| | 'LL->L', 'qq->q', 'QQ->Q', |
| | ('ee->e', _float_maximum), |
| | ('ff->f', _float_maximum), |
| | ('dd->d', _float_maximum), |
| | ('FF->F', _float_maximum), |
| | ('DD->D', _float_maximum)), |
| | 'out0 = max(in0, in1)', |
| | preamble=_float_preamble, |
| | doc='''Takes the maximum of two arrays elementwise. |
| | |
| | If NaN appears, it returns the NaN. |
| | |
| | .. seealso:: :data:`numpy.maximum` |
| | |
| | ''', |
| | cutensor_op=('OP_MAX', 1, 1), scatter_op='max') |
| |
|
| |
|
| | _float_minimum = ('out0 = (isnan(in0) | isnan(in1)) ? out0_type(NAN) : ' |
| | 'out0_type(min(in0, in1))') |
| | minimum = _core.create_ufunc( |
| | 'cupy_minimum', |
| | ('??->?', 'bb->b', 'BB->B', 'hh->h', 'HH->H', 'ii->i', 'II->I', 'll->l', |
| | 'LL->L', 'qq->q', 'QQ->Q', |
| | ('ee->e', _float_minimum), |
| | ('ff->f', _float_minimum), |
| | ('dd->d', _float_minimum), |
| | ('FF->F', _float_minimum), |
| | ('DD->D', _float_minimum)), |
| | 'out0 = min(in0, in1)', |
| | preamble=_float_preamble, |
| | doc='''Takes the minimum of two arrays elementwise. |
| | |
| | If NaN appears, it returns the NaN. |
| | |
| | .. seealso:: :data:`numpy.minimum` |
| | |
| | ''', |
| | cutensor_op=('OP_MIN', 1, 1), scatter_op='min') |
| |
|
| |
|
| | fmax = _core.create_ufunc( |
| | 'cupy_fmax', |
| | ('??->?', 'bb->b', 'BB->B', 'hh->h', 'HH->H', 'ii->i', 'II->I', 'll->l', |
| | 'LL->L', 'qq->q', 'QQ->Q', |
| | ('ee->e', 'out0 = fmax(in0, in1)'), |
| | ('ff->f', 'out0 = fmax(in0, in1)'), |
| | ('dd->d', 'out0 = fmax(in0, in1)'), |
| | 'FF->F', 'DD->D'), |
| | 'out0 = max(in0, in1)', |
| | doc='''Takes the maximum of two arrays elementwise. |
| | |
| | If NaN appears, it returns the other operand. |
| | |
| | .. seealso:: :data:`numpy.fmax` |
| | |
| | ''') |
| |
|
| |
|
| | fmin = _core.create_ufunc( |
| | 'cupy_fmin', |
| | ('??->?', 'bb->b', 'BB->B', 'hh->h', 'HH->H', 'ii->i', 'II->I', 'll->l', |
| | 'LL->L', 'qq->q', 'QQ->Q', |
| | ('ee->e', 'out0 = fmin(in0, in1)'), |
| | ('ff->f', 'out0 = fmin(in0, in1)'), |
| | ('dd->d', 'out0 = fmin(in0, in1)'), |
| | 'FF->F', 'DD->D'), |
| | 'out0 = min(in0, in1)', |
| | doc='''Takes the minimum of two arrays elementwise. |
| | |
| | If NaN appears, it returns the other operand. |
| | |
| | .. seealso:: :data:`numpy.fmin` |
| | |
| | ''') |
| |
|
| |
|
| | _nan_to_num_preamble = ''' |
| | template <class T> |
| | __device__ T nan_to_num(T x, T nan, T posinf, T neginf) { |
| | if (isnan(x)) |
| | return nan; |
| | if (isinf(x)) |
| | return x > 0 ? posinf : neginf; |
| | return x; |
| | } |
| | |
| | template <class T> |
| | __device__ complex<T> nan_to_num(complex<T> x, T nan, T posinf, T neginf) { |
| | T re = nan_to_num(x.real(), nan, posinf, neginf); |
| | T im = nan_to_num(x.imag(), nan, posinf, neginf); |
| | return complex<T>(re, im); |
| | } |
| | ''' |
| |
|
| |
|
| | _nan_to_num = _core.create_ufunc( |
| | 'cupy_nan_to_num_', |
| | ('????->?', 'bbbb->b', 'BBBB->B', 'hhhh->h', 'HHHH->H', |
| | 'iiii->i', 'IIII->I', 'llll->l', 'LLLL->L', 'qqqq->q', 'QQQQ->Q', |
| | ('eeee->e', |
| | 'out0 = nan_to_num(in0, in1, in2, in3)'), |
| | ('ffff->f', |
| | 'out0 = nan_to_num(in0, in1, in2, in3)'), |
| | ('dddd->d', |
| | 'out0 = nan_to_num(in0, in1, in2, in3)'), |
| | ('Ffff->F', |
| | 'out0 = nan_to_num(in0, in1, in2, in3)'), |
| | ('Dddd->D', |
| | 'out0 = nan_to_num(in0, in1, in2, in3)')), |
| | 'out0 = in0', |
| | preamble=_nan_to_num_preamble, |
| | doc='''Elementwise nan_to_num function. |
| | |
| | .. seealso:: :func:`numpy.nan_to_num` |
| | |
| | ''') |
| |
|
| |
|
| | def _check_nan_inf(x, dtype, neg=None): |
| | if dtype.char in 'FD': |
| | dtype = cupy.dtype(dtype.char.lower()) |
| | if dtype.char not in 'efd': |
| | x = 0 |
| | elif x is None and neg is not None: |
| | x = cupy.finfo(dtype).min if neg else cupy.finfo(dtype).max |
| | elif cupy.isnan(x): |
| | x = cupy.nan |
| | elif cupy.isinf(x): |
| | x = cupy.inf * (-1)**(x < 0) |
| | return cupy.asanyarray(x, dtype) |
| |
|
| |
|
| | def nan_to_num(x, copy=True, nan=0.0, posinf=None, neginf=None): |
| | """Replace NaN with zero and infinity with large finite numbers (default |
| | behaviour) or with the numbers defined by the user using the `nan`, |
| | `posinf` and/or `neginf` keywords. |
| | |
| | .. seealso:: :func:`numpy.nan_to_num` |
| | |
| | """ |
| | if not isinstance(x, cupy.ndarray): |
| | out = cupy.full((), x) |
| | else: |
| | out = cupy.empty_like(x) if copy else x |
| | dtype = out.dtype |
| | nan = _check_nan_inf(nan, dtype) |
| | posinf = _check_nan_inf(posinf, dtype, False) |
| | neginf = _check_nan_inf(neginf, dtype, True) |
| | return _nan_to_num(x, nan, posinf, neginf, out=out) |
| |
|
| |
|
| | def real_if_close(a, tol=100): |
| | """If input is complex with all imaginary parts close to zero, return real |
| | parts. |
| | "Close to zero" is defined as `tol` * (machine epsilon of the type for |
| | `a`). |
| | |
| | .. warning:: |
| | |
| | This function may synchronize the device. |
| | |
| | .. seealso:: :func:`numpy.real_if_close` |
| | """ |
| | if not issubclass(a.dtype.type, cupy.complexfloating): |
| | return a |
| | if tol > 1: |
| | f = numpy.finfo(a.dtype.type) |
| | tol = f.eps * tol |
| | if cupy.all(cupy.absolute(a.imag) < tol): |
| | a = a.real |
| | return a |
| |
|
| |
|
| | @cupy._util.memoize(for_each_device=True) |
| | def _get_interp_kernel(is_complex): |
| | in_params = 'raw V x, raw U idx, ' |
| | in_params += 'raw W fx, raw Y fy, U len, raw Y left, raw Y right' |
| | out_params = 'Z y' |
| |
|
| | if is_complex: |
| | preamble = 'typedef double real_t;\n' |
| | else: |
| | preamble = 'typedef Z real_t;\n' |
| | preamble += 'typedef Z value_t;\n' |
| | preamble += cupy._sorting.search._preamble |
| |
|
| | code = r''' |
| | U x_idx = idx[i] - 1; |
| | |
| | if ( _isnan<V>(x[i]) ) { y = x[i]; } |
| | else if (x_idx < 0) { y = left[0]; } |
| | else if (x[i] == fx[len - 1]) { |
| | // searchsorted cannot handle both of the boundary points, |
| | // so we must detect and correct ourselves... |
| | y = fy[len - 1]; |
| | } |
| | else if (x_idx >= len - 1) { y = right[0]; } |
| | else { |
| | const Z slope = (value_t)(fy[x_idx+1] - fy[x_idx]) / \ |
| | ((real_t)fx[x_idx+1] - (real_t)fx[x_idx]); |
| | Z out = slope * ((real_t)x[i] - (real_t)fx[x_idx]) \ |
| | + (value_t)fy[x_idx]; |
| | if (_isnan<Z>(out)) { |
| | out = slope * ((real_t)x[i] - (real_t)fx[x_idx+1]) \ |
| | + (value_t)fy[x_idx+1]; |
| | if (_isnan<Z>(out) && (fy[x_idx] == fy[x_idx+1])) { |
| | out = fy[x_idx]; |
| | } |
| | } |
| | y = out; |
| | } |
| | ''' |
| | return cupy.ElementwiseKernel( |
| | in_params, out_params, code, 'cupy_interp', preamble=preamble) |
| |
|
| |
|
| | def interp(x, xp, fp, left=None, right=None, period=None): |
| | """ One-dimensional linear interpolation. |
| | |
| | Args: |
| | x (cupy.ndarray): a 1D array of points on which the interpolation |
| | is performed. |
| | xp (cupy.ndarray): a 1D array of points on which the function values |
| | (``fp``) are known. |
| | fp (cupy.ndarray): a 1D array containing the function values at the |
| | the points ``xp``. |
| | left (float or complex): value to return if ``x < xp[0]``. Default is |
| | ``fp[0]``. |
| | right (float or complex): value to return if ``x > xp[-1]``. Default is |
| | ``fp[-1]``. |
| | period (None or float): a period for the x-coordinates. Parameters |
| | ``left`` and ``right`` are ignored if ``period`` is specified. |
| | Default is ``None``. |
| | |
| | Returns: |
| | cupy.ndarray: The interpolated values, same shape as ``x``. |
| | |
| | .. note:: |
| | This function may synchronize if ``left`` or ``right`` is not already |
| | on the device. |
| | |
| | .. seealso:: :func:`numpy.interp` |
| | |
| | """ |
| |
|
| | if xp.ndim != 1 or fp.ndim != 1: |
| | raise ValueError('xp and fp must be 1D arrays') |
| | if xp.size != fp.size: |
| | raise ValueError('fp and xp are not of the same length') |
| | if xp.size == 0: |
| | raise ValueError('array of sample points is empty') |
| | if not x.flags.c_contiguous: |
| | raise NotImplementedError('Non-C-contiguous x is currently not ' |
| | 'supported') |
| | x_dtype = cupy.common_type(x, xp) |
| | if not cupy.can_cast(x_dtype, cupy.float64): |
| | raise TypeError('Cannot cast array data from' |
| | ' {} to {} according to the rule \'safe\'' |
| | .format(x_dtype, cupy.float64)) |
| |
|
| | if period is not None: |
| | |
| |
|
| | if period == 0: |
| | raise ValueError("period must be a non-zero value") |
| | period = abs(period) |
| | left = None |
| | right = None |
| |
|
| | x = x.astype(cupy.float64) |
| | xp = xp.astype(cupy.float64) |
| |
|
| | |
| | x %= period |
| | xp %= period |
| | asort_xp = cupy.argsort(xp) |
| | xp = xp[asort_xp] |
| | fp = fp[asort_xp] |
| | xp = cupy.concatenate((xp[-1:]-period, xp, xp[0:1]+period)) |
| | fp = cupy.concatenate((fp[-1:], fp, fp[0:1])) |
| | assert xp.flags.c_contiguous |
| | assert fp.flags.c_contiguous |
| |
|
| | |
| | |
| | out_dtype = 'D' if fp.dtype.kind == 'c' else 'd' |
| | output = cupy.empty(x.shape, dtype=out_dtype) |
| | idx = cupy.searchsorted(xp, x, side='right') |
| | left = fp[0] if left is None else cupy.array(left, fp.dtype) |
| | right = fp[-1] if right is None else cupy.array(right, fp.dtype) |
| | kern = _get_interp_kernel(out_dtype == 'D') |
| | kern(x, idx, xp, fp, xp.size, left, right, output) |
| | return output |
| |
|