| import warnings |
|
|
| import numpy |
|
|
| import cupy |
| from cupy._core import _routines_math as _math |
| from cupy._core import _fusion_thread_local |
| from cupy._core import internal |
|
|
|
|
| def sum(a, axis=None, dtype=None, out=None, keepdims=False): |
| """Returns the sum of an array along given axes. |
| |
| Args: |
| a (cupy.ndarray): Array to take sum. |
| axis (int or sequence of ints): Axes along which the sum is taken. |
| dtype: Data type specifier. |
| out (cupy.ndarray): Output array. |
| keepdims (bool): If ``True``, the specified axes are remained as axes |
| of length one. |
| |
| Returns: |
| cupy.ndarray: The result array. |
| |
| .. seealso:: :func:`numpy.sum` |
| |
| """ |
| if _fusion_thread_local.is_fusing(): |
| if keepdims: |
| raise NotImplementedError( |
| 'cupy.sum does not support `keepdims` in fusion yet.') |
| if dtype is None: |
| func = _math.sum_auto_dtype |
| else: |
| func = _math._sum_keep_dtype |
| return _fusion_thread_local.call_reduction( |
| func, a, axis=axis, dtype=dtype, out=out) |
|
|
| |
| return a.sum(axis, dtype, out, keepdims) |
|
|
|
|
| def prod(a, axis=None, dtype=None, out=None, keepdims=False): |
| """Returns the product of an array along given axes. |
| |
| Args: |
| a (cupy.ndarray): Array to take product. |
| axis (int or sequence of ints): Axes along which the product is taken. |
| dtype: Data type specifier. |
| out (cupy.ndarray): Output array. |
| keepdims (bool): If ``True``, the specified axes are remained as axes |
| of length one. |
| |
| Returns: |
| cupy.ndarray: The result array. |
| |
| .. seealso:: :func:`numpy.prod` |
| |
| """ |
| if _fusion_thread_local.is_fusing(): |
| if keepdims: |
| raise NotImplementedError( |
| 'cupy.prod does not support `keepdims` in fusion yet.') |
| if dtype is None: |
| func = _math._prod_auto_dtype |
| else: |
| func = _math._prod_keep_dtype |
| return _fusion_thread_local.call_reduction( |
| func, a, axis=axis, dtype=dtype, out=out) |
|
|
| |
| return a.prod(axis, dtype, out, keepdims) |
|
|
|
|
| def nansum(a, axis=None, dtype=None, out=None, keepdims=False): |
| """Returns the sum of an array along given axes treating Not a Numbers |
| (NaNs) as zero. |
| |
| Args: |
| a (cupy.ndarray): Array to take sum. |
| axis (int or sequence of ints): Axes along which the sum is taken. |
| dtype: Data type specifier. |
| out (cupy.ndarray): Output array. |
| keepdims (bool): If ``True``, the specified axes are remained as axes |
| of length one. |
| |
| Returns: |
| cupy.ndarray: The result array. |
| |
| .. seealso:: :func:`numpy.nansum` |
| |
| """ |
| if _fusion_thread_local.is_fusing(): |
| if keepdims: |
| raise NotImplementedError( |
| 'cupy.nansum does not support `keepdims` in fusion yet.') |
| if a.dtype.char in 'FD': |
| func = _math._nansum_complex_dtype |
| elif dtype is None: |
| func = _math._nansum_auto_dtype |
| else: |
| func = _math._nansum_keep_dtype |
| return _fusion_thread_local.call_reduction( |
| func, a, axis=axis, dtype=dtype, out=out) |
|
|
| |
| return _math._nansum(a, axis, dtype, out, keepdims) |
|
|
|
|
| def nanprod(a, axis=None, dtype=None, out=None, keepdims=False): |
| """Returns the product of an array along given axes treating Not a Numbers |
| (NaNs) as zero. |
| |
| Args: |
| a (cupy.ndarray): Array to take product. |
| axis (int or sequence of ints): Axes along which the product is taken. |
| dtype: Data type specifier. |
| out (cupy.ndarray): Output array. |
| keepdims (bool): If ``True``, the specified axes are remained as axes |
| of length one. |
| |
| Returns: |
| cupy.ndarray: The result array. |
| |
| .. seealso:: :func:`numpy.nanprod` |
| |
| """ |
| if _fusion_thread_local.is_fusing(): |
| if keepdims: |
| raise NotImplementedError( |
| 'cupy.nanprod does not support `keepdims` in fusion yet.') |
| if dtype is None: |
| func = _math._nanprod_auto_dtype |
| else: |
| func = _math._nanprod_keep_dtype |
| return _fusion_thread_local.call_reduction( |
| func, a, axis=axis, dtype=dtype, out=out) |
|
|
| |
| return _math._nanprod(a, axis, dtype, out, keepdims) |
|
|
|
|
| def cumsum(a, axis=None, dtype=None, out=None): |
| """Returns the cumulative sum of an array along a given axis. |
| |
| Args: |
| a (cupy.ndarray): Input array. |
| axis (int): Axis along which the cumulative sum is taken. If it is not |
| specified, the input is flattened. |
| dtype: Data type specifier. |
| out (cupy.ndarray): Output array. |
| |
| Returns: |
| cupy.ndarray: The result array. |
| |
| .. seealso:: :func:`numpy.cumsum` |
| |
| """ |
| return _math.scan_core(a, axis, _math.scan_op.SCAN_SUM, dtype, out) |
|
|
|
|
| def cumprod(a, axis=None, dtype=None, out=None): |
| """Returns the cumulative product of an array along a given axis. |
| |
| Args: |
| a (cupy.ndarray): Input array. |
| axis (int): Axis along which the cumulative product is taken. If it is |
| not specified, the input is flattened. |
| dtype: Data type specifier. |
| out (cupy.ndarray): Output array. |
| |
| Returns: |
| cupy.ndarray: The result array. |
| |
| .. seealso:: :func:`numpy.cumprod` |
| |
| """ |
| return _math.scan_core(a, axis, _math.scan_op.SCAN_PROD, dtype, out) |
|
|
|
|
| def nancumsum(a, axis=None, dtype=None, out=None): |
| """Returns the cumulative sum of an array along a given axis treating Not a |
| Numbers (NaNs) as zero. |
| |
| Args: |
| a (cupy.ndarray): Input array. |
| axis (int): Axis along which the cumulative sum is taken. If it is not |
| specified, the input is flattened. |
| dtype: Data type specifier. |
| out (cupy.ndarray): Output array. |
| |
| Returns: |
| cupy.ndarray: The result array. |
| |
| .. seealso:: :func:`numpy.nancumsum` |
| """ |
| a = _replace_nan(a, 0, out=out) |
| return cumsum(a, axis=axis, dtype=dtype, out=out) |
|
|
|
|
| def nancumprod(a, axis=None, dtype=None, out=None): |
| """Returns the cumulative product of an array along a given axis treating |
| Not a Numbers (NaNs) as one. |
| |
| Args: |
| a (cupy.ndarray): Input array. |
| axis (int): Axis along which the cumulative product is taken. If it is |
| not specified, the input is flattened. |
| dtype: Data type specifier. |
| out (cupy.ndarray): Output array. |
| |
| Returns: |
| cupy.ndarray: The result array. |
| |
| .. seealso:: :func:`numpy.nancumprod` |
| """ |
| a = _replace_nan(a, 1, out=out) |
| return cumprod(a, axis=axis, dtype=dtype, out=out) |
|
|
|
|
| _replace_nan_kernel = cupy._core._kernel.ElementwiseKernel( |
| 'T a, T val', 'T out', 'if (a == a) {out = a;} else {out = val;}', |
| 'cupy_replace_nan') |
|
|
|
|
| def _replace_nan(a, val, out=None): |
| if out is None or a.dtype != out.dtype: |
| out = cupy.empty_like(a) |
| _replace_nan_kernel(a, val, out) |
| return out |
|
|
|
|
| def diff(a, n=1, axis=-1, prepend=None, append=None): |
| """Calculate the n-th discrete difference along the given axis. |
| |
| Args: |
| a (cupy.ndarray): Input array. |
| n (int): The number of times values are differenced. If zero, the input |
| is returned as-is. |
| axis (int): The axis along which the difference is taken, default is |
| the last axis. |
| prepend (int, float, cupy.ndarray): Value to prepend to ``a``. |
| append (int, float, cupy.ndarray): Value to append to ``a``. |
| |
| Returns: |
| cupy.ndarray: The result array. |
| |
| .. seealso:: :func:`numpy.diff` |
| """ |
|
|
| if n == 0: |
| return a |
| if n < 0: |
| raise ValueError( |
| "order must be non-negative but got " + repr(n)) |
|
|
| a = cupy.asanyarray(a) |
| nd = a.ndim |
| axis = internal._normalize_axis_index(axis, nd) |
|
|
| combined = [] |
|
|
| if prepend is not None: |
| prepend = cupy.asanyarray(prepend) |
| if prepend.ndim == 0: |
| shape = list(a.shape) |
| shape[axis] = 1 |
| prepend = cupy.broadcast_to(prepend, tuple(shape)) |
| combined.append(prepend) |
|
|
| combined.append(a) |
|
|
| if append is not None: |
| append = cupy.asanyarray(append) |
| if append.ndim == 0: |
| shape = list(a.shape) |
| shape[axis] = 1 |
| append = cupy.broadcast_to(append, tuple(shape)) |
| combined.append(append) |
|
|
| if len(combined) > 1: |
| a = cupy.concatenate(combined, axis) |
|
|
| slice1 = [slice(None)] * nd |
| slice2 = [slice(None)] * nd |
| slice1[axis] = slice(1, None) |
| slice2[axis] = slice(None, -1) |
| slice1 = tuple(slice1) |
| slice2 = tuple(slice2) |
|
|
| op = cupy.not_equal if a.dtype == numpy.bool_ else cupy.subtract |
| for _ in range(n): |
| a = op(a[slice1], a[slice2]) |
|
|
| return a |
|
|
|
|
| def gradient(f, *varargs, axis=None, edge_order=1): |
| """Return the gradient of an N-dimensional array. |
| |
| The gradient is computed using second order accurate central differences |
| in the interior points and either first or second order accurate one-sides |
| (forward or backwards) differences at the boundaries. |
| The returned gradient hence has the same shape as the input array. |
| |
| Args: |
| f (cupy.ndarray): An N-dimensional array containing samples of a scalar |
| function. |
| varargs (list of scalar or array, optional): Spacing between f values. |
| Default unitary spacing for all dimensions. Spacing can be |
| specified using: |
| |
| 1. single scalar to specify a sample distance for all dimensions. |
| 2. N scalars to specify a constant sample distance for each |
| dimension. i.e. `dx`, `dy`, `dz`, ... |
| 3. N arrays to specify the coordinates of the values along each |
| dimension of F. The length of the array must match the size of |
| the corresponding dimension |
| 4. Any combination of N scalars/arrays with the meaning of 2. and |
| 3. |
| |
| If `axis` is given, the number of varargs must equal the number of |
| axes. Default: 1. |
| edge_order ({1, 2}, optional): The gradient is calculated using N-th |
| order accurate differences at the boundaries. Default: 1. |
| axis (None or int or tuple of ints, optional): The gradient is |
| calculated only along the given axis or axes. The default |
| (axis = None) is to calculate the gradient for all the axes of the |
| input array. axis may be negative, in which case it counts from the |
| last to the first axis. |
| |
| Returns: |
| gradient (cupy.ndarray or list of cupy.ndarray): A set of ndarrays |
| (or a single ndarray if there is only one dimension) corresponding |
| to the derivatives of f with respect to each dimension. Each |
| derivative has the same shape as f. |
| |
| .. seealso:: :func:`numpy.gradient` |
| """ |
| f = cupy.asanyarray(f) |
| ndim = f.ndim |
| axes = internal._normalize_axis_indices(axis, ndim, sort_axes=False) |
|
|
| len_axes = len(axes) |
| n = len(varargs) |
| if n == 0: |
| |
| dx = [1.0] * len_axes |
| elif n == 1 and cupy.ndim(varargs[0]) == 0: |
| |
| dx = varargs * len_axes |
| elif n == len_axes: |
| |
| dx = list(varargs) |
| for i, distances in enumerate(dx): |
| if cupy.ndim(distances) == 0: |
| continue |
| elif cupy.ndim(distances) != 1: |
| raise ValueError("distances must be either scalars or 1d") |
| if len(distances) != f.shape[axes[i]]: |
| raise ValueError( |
| "when 1d, distances must match " |
| "the length of the corresponding dimension" |
| ) |
| if numpy.issubdtype(distances.dtype, numpy.integer): |
| |
| |
| distances = distances.astype(numpy.float64) |
| diffx = cupy.diff(distances) |
| |
| |
| if (diffx == diffx[0]).all(): |
| diffx = diffx[0] |
| dx[i] = diffx |
| else: |
| raise TypeError("invalid number of arguments") |
|
|
| if edge_order > 2: |
| raise ValueError("'edge_order' greater than 2 not supported") |
|
|
| |
| |
|
|
| outvals = [] |
|
|
| |
| slice1 = [slice(None)] * ndim |
| slice2 = [slice(None)] * ndim |
| slice3 = [slice(None)] * ndim |
| slice4 = [slice(None)] * ndim |
|
|
| otype = f.dtype |
| if numpy.issubdtype(otype, numpy.inexact): |
| pass |
| else: |
| |
| |
| |
| if numpy.issubdtype(otype, numpy.integer): |
| f = f.astype(numpy.float64) |
| otype = numpy.float64 |
|
|
| for axis, ax_dx in zip(axes, dx): |
| if f.shape[axis] < edge_order + 1: |
| raise ValueError( |
| "Shape of array too small to calculate a numerical gradient, " |
| "at least (edge_order + 1) elements are required." |
| ) |
| |
| out = cupy.empty_like(f, dtype=otype) |
|
|
| |
| uniform_spacing = cupy.ndim(ax_dx) == 0 |
|
|
| |
| slice1[axis] = slice(1, -1) |
| slice2[axis] = slice(None, -2) |
| slice3[axis] = slice(1, -1) |
| slice4[axis] = slice(2, None) |
|
|
| if uniform_spacing: |
| out[tuple(slice1)] = (f[tuple(slice4)] - f[tuple(slice2)]) / ( |
| 2.0 * ax_dx |
| ) |
| else: |
| dx1 = ax_dx[0:-1] |
| dx2 = ax_dx[1:] |
| dx_sum = dx1 + dx2 |
| a = -(dx2) / (dx1 * dx_sum) |
| b = (dx2 - dx1) / (dx1 * dx2) |
| c = dx1 / (dx2 * dx_sum) |
| |
| shape = [1] * ndim |
| shape[axis] = -1 |
| a.shape = b.shape = c.shape = tuple(shape) |
| |
| out[tuple(slice1)] = (a * f[tuple(slice2)] + |
| b * f[tuple(slice3)] + |
| c * f[tuple(slice4)]) |
|
|
| |
| if edge_order == 1: |
| slice1[axis] = 0 |
| slice2[axis] = 1 |
| slice3[axis] = 0 |
| dx_0 = ax_dx if uniform_spacing else ax_dx[0] |
| |
| out[tuple(slice1)] = (f[tuple(slice2)] - f[tuple(slice3)]) / dx_0 |
|
|
| slice1[axis] = -1 |
| slice2[axis] = -1 |
| slice3[axis] = -2 |
| dx_n = ax_dx if uniform_spacing else ax_dx[-1] |
| |
| out[tuple(slice1)] = (f[tuple(slice2)] - f[tuple(slice3)]) / dx_n |
|
|
| |
| else: |
| slice1[axis] = 0 |
| slice2[axis] = 0 |
| slice3[axis] = 1 |
| slice4[axis] = 2 |
| if uniform_spacing: |
| a = -1.5 / ax_dx |
| b = 2.0 / ax_dx |
| c = -0.5 / ax_dx |
| else: |
| dx1 = ax_dx[0] |
| dx2 = ax_dx[1] |
| dx_sum = dx1 + dx2 |
| a = -(2.0 * dx1 + dx2) / (dx1 * (dx_sum)) |
| b = dx_sum / (dx1 * dx2) |
| c = -dx1 / (dx2 * (dx_sum)) |
| |
| out[tuple(slice1)] = (a * f[tuple(slice2)] + |
| b * f[tuple(slice3)] + |
| c * f[tuple(slice4)]) |
|
|
| slice1[axis] = -1 |
| slice2[axis] = -3 |
| slice3[axis] = -2 |
| slice4[axis] = -1 |
| if uniform_spacing: |
| a = 0.5 / ax_dx |
| b = -2.0 / ax_dx |
| c = 1.5 / ax_dx |
| else: |
| dx1 = ax_dx[-2] |
| dx2 = ax_dx[-1] |
| dx_sum = dx1 + dx2 |
| a = (dx2) / (dx1 * (dx_sum)) |
| b = -dx_sum / (dx1 * dx2) |
| c = (2.0 * dx2 + dx1) / (dx2 * (dx_sum)) |
| |
| out[tuple(slice1)] = (a * f[tuple(slice2)] + |
| b * f[tuple(slice3)] + |
| c * f[tuple(slice4)]) |
| outvals.append(out) |
|
|
| |
| slice1[axis] = slice(None) |
| slice2[axis] = slice(None) |
| slice3[axis] = slice(None) |
| slice4[axis] = slice(None) |
|
|
| if len_axes == 1: |
| return outvals[0] |
| else: |
| return outvals |
|
|
|
|
| def ediff1d(arr, to_end=None, to_begin=None): |
| """ |
| Calculates the difference between consecutive elements of an array. |
| |
| Args: |
| arr (cupy.ndarray): Input array. |
| to_end (cupy.ndarray, optional): Numbers to append at the end |
| of the returned differences. |
| to_begin (cupy.ndarray, optional): Numbers to prepend at the |
| beginning of the returned differences. |
| |
| Returns: |
| cupy.ndarray: New array consisting differences among succeeding |
| elements. |
| |
| .. seealso:: :func:`numpy.ediff1d` |
| """ |
| if not isinstance(arr, cupy.ndarray): |
| raise TypeError('`arr` should be of type cupy.ndarray') |
|
|
| |
| arr = arr.ravel() |
|
|
| |
| dtype_req = arr.dtype |
|
|
| |
| if to_begin is None and to_end is None: |
| return arr[1:] - arr[:-1] |
|
|
| if to_begin is None: |
| l_begin = 0 |
| else: |
| if not isinstance(to_begin, cupy.ndarray): |
| raise TypeError('`to_begin` should be of type cupy.ndarray') |
| if not cupy.can_cast(to_begin, dtype_req, casting="same_kind"): |
| raise TypeError("dtype of `to_begin` must be compatible " |
| "with input `arr` under the `same_kind` rule.") |
|
|
| to_begin = to_begin.ravel() |
| l_begin = len(to_begin) |
|
|
| if to_end is None: |
| l_end = 0 |
| else: |
| if not isinstance(to_end, cupy.ndarray): |
| raise TypeError('`to_end` should be of type cupy.ndarray') |
| if not cupy.can_cast(to_end, dtype_req, casting="same_kind"): |
| raise TypeError("dtype of `to_end` must be compatible " |
| "with input `arr` under the `same_kind` rule.") |
|
|
| to_end = to_end.ravel() |
| l_end = len(to_end) |
|
|
| |
| l_diff = max(len(arr) - 1, 0) |
| result = cupy.empty(l_diff + l_begin + l_end, dtype=arr.dtype) |
| |
| |
| if l_begin > 0: |
| result[:l_begin] = to_begin |
| if l_end > 0: |
| result[l_begin + l_diff:] = to_end |
| cupy.subtract(arr[1:], arr[:-1], result[l_begin:l_begin + l_diff]) |
| return result |
|
|
|
|
| |
|
|
|
|
| def trapz(y, x=None, dx=1.0, axis=-1): |
| """ |
| Integrate along the given axis using the composite trapezoidal rule. |
| Integrate `y` (`x`) along the given axis. |
| |
| Args: |
| y (cupy.ndarray): Input array to integrate. |
| x (cupy.ndarray): Sample points over which to integrate. If None equal |
| spacing `dx` is assumed. |
| dx (float): Spacing between sample points, used if `x` is None, default |
| is 1. |
| axis (int): The axis along which the integral is taken, default is |
| the last axis. |
| |
| Returns: |
| cupy.ndarray: Definite integral as approximated by the trapezoidal |
| rule. |
| |
| .. seealso:: :func:`numpy.trapz` |
| """ |
| if not isinstance(y, cupy.ndarray): |
| raise TypeError('`y` should be of type cupy.ndarray') |
|
|
| if x is None: |
| d = dx |
| else: |
| if not isinstance(x, cupy.ndarray): |
| raise TypeError('`x` should be of type cupy.ndarray') |
| if x.ndim == 1: |
| d = diff(x) |
| |
| shape = [1] * y.ndim |
| shape[axis] = d.shape[0] |
| d = d.reshape(shape) |
| else: |
| d = diff(x, axis=axis) |
| nd = y.ndim |
| slice1 = [slice(None)] * nd |
| slice2 = [slice(None)] * nd |
| slice1[axis] = slice(1, None) |
| slice2[axis] = slice(None, -1) |
| product = d * (y[tuple(slice1)] + y[tuple(slice2)]) / 2.0 |
| try: |
| ret = product.sum(axis) |
| except ValueError: |
| ret = cupy.add.reduce(product, axis) |
| return ret |
|
|
|
|
| def product(a, axis=None, dtype=None, out=None, keepdims=False): |
| warnings.warn('Please use `prod` instead.', DeprecationWarning) |
| return prod(a, axis, dtype, out, keepdims) |
|
|
|
|
| def cumproduct(a, axis=None, dtype=None, out=None): |
| warnings.warn('Please use `cumprod` instead.', DeprecationWarning) |
| return cumprod(a, axis, dtype, out) |
|
|