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""" Read/Write BSDF files. |
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Backend Library: internal |
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The BSDF format enables reading and writing of image data in the |
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BSDF serialization format. This format allows storage of images, volumes, |
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and series thereof. Data can be of any numeric data type, and can |
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optionally be compressed. Each image/volume can have associated |
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meta data, which can consist of any data type supported by BSDF. |
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By default, image data is lazily loaded; the actual image data is |
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not read until it is requested. This allows storing multiple images |
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in a single file and still have fast access to individual images. |
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Alternatively, a series of images can be read in streaming mode, reading |
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images as they are read (e.g. from http). |
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BSDF is a simple generic binary format. It is easy to extend and there |
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are standard extension definitions for 2D and 3D image data. |
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Read more at http://bsdf.io. |
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Parameters |
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---------- |
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random_access : bool |
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Whether individual images in the file can be read in random order. |
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Defaults to True for normal files, and to False when reading from HTTP. |
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If False, the file is read in "streaming mode", allowing reading |
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files as they are read, but without support for "rewinding". |
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Note that setting this to True when reading from HTTP, the whole file |
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is read upon opening it (since lazy loading is not possible over HTTP). |
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compression : int |
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Use ``0`` or "no" for no compression, ``1`` or "zlib" for Zlib |
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compression (same as zip files and PNG), and ``2`` or "bz2" for Bz2 |
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compression (more compact but slower). Default 1 (zlib). |
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Note that some BSDF implementations may not support compression |
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(e.g. JavaScript). |
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""" |
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import numpy as np |
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from ..core import Format |
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def get_bsdf_serializer(options): |
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from . import _bsdf as bsdf |
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class NDArrayExtension(bsdf.Extension): |
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"""Copy of BSDF's NDArrayExtension but deal with lazy blobs.""" |
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name = "ndarray" |
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cls = np.ndarray |
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def encode(self, s, v): |
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return dict(shape=v.shape, dtype=str(v.dtype), data=v.tobytes()) |
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def decode(self, s, v): |
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return v |
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class ImageExtension(bsdf.Extension): |
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"""We implement two extensions that trigger on the Image classes.""" |
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def encode(self, s, v): |
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return dict(array=v.array, meta=v.meta) |
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def decode(self, s, v): |
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return Image(v["array"], v["meta"]) |
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class Image2DExtension(ImageExtension): |
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name = "image2d" |
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cls = Image2D |
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class Image3DExtension(ImageExtension): |
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name = "image3d" |
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cls = Image3D |
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exts = [NDArrayExtension, Image2DExtension, Image3DExtension] |
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serializer = bsdf.BsdfSerializer(exts, **options) |
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return bsdf, serializer |
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class Image: |
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"""Class in which we wrap the array and meta data. By using an extension |
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we can make BSDF trigger on these classes and thus encode the images. |
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as actual images. |
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""" |
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def __init__(self, array, meta): |
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self.array = array |
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self.meta = meta |
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def get_array(self): |
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if not isinstance(self.array, np.ndarray): |
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v = self.array |
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blob = v["data"] |
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if not isinstance(blob, bytes): |
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blob = blob.get_bytes() |
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self.array = np.frombuffer(blob, dtype=v["dtype"]) |
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self.array.shape = v["shape"] |
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return self.array |
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def get_meta(self): |
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return self.meta |
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class Image2D(Image): |
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pass |
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class Image3D(Image): |
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pass |
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class BsdfFormat(Format): |
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"""The BSDF format enables reading and writing of image data in the |
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BSDF serialization format. This format allows storage of images, volumes, |
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and series thereof. Data can be of any numeric data type, and can |
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optionally be compressed. Each image/volume can have associated |
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meta data, which can consist of any data type supported by BSDF. |
|
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|
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|
By default, image data is lazily loaded; the actual image data is |
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not read until it is requested. This allows storing multiple images |
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in a single file and still have fast access to individual images. |
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|
Alternatively, a series of images can be read in streaming mode, reading |
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|
images as they are read (e.g. from http). |
|
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|
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|
BSDF is a simple generic binary format. It is easy to extend and there |
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are standard extension definitions for 2D and 3D image data. |
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Read more at http://bsdf.io. |
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Parameters for reading |
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---------------------- |
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random_access : bool |
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Whether individual images in the file can be read in random order. |
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Defaults to True for normal files, and to False when reading from HTTP. |
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If False, the file is read in "streaming mode", allowing reading |
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files as they are read, but without support for "rewinding". |
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Note that setting this to True when reading from HTTP, the whole file |
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is read upon opening it (since lazy loading is not possible over HTTP). |
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Parameters for saving |
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--------------------- |
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compression : {0, 1, 2} |
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Use ``0`` or "no" for no compression, ``1`` or "zlib" for Zlib |
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compression (same as zip files and PNG), and ``2`` or "bz2" for Bz2 |
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compression (more compact but slower). Default 1 (zlib). |
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Note that some BSDF implementations may not support compression |
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(e.g. JavaScript). |
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""" |
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def _can_read(self, request): |
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if request.mode[1] in (self.modes + "?"): |
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if request.firstbytes.startswith(b"BSDF"): |
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return True |
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def _can_write(self, request): |
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if request.mode[1] in (self.modes + "?"): |
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if request.extension in self.extensions: |
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return True |
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class Reader(Format.Reader): |
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def _open(self, random_access=None): |
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assert self.request.firstbytes[:4] == b"BSDF", "Not a BSDF file" |
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if not ( |
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self.request.firstbytes[6:15] == b"M\x07image2D" |
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or self.request.firstbytes[6:15] == b"M\x07image3D" |
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or self.request.firstbytes[6:7] == b"l" |
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): |
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pass |
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options = {} |
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if self.request.filename.startswith(("http://", "https://")): |
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ra = False if random_access is None else bool(random_access) |
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options["lazy_blob"] = False |
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options["load_streaming"] = not ra |
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else: |
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ra = True if random_access is None else bool(random_access) |
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options["lazy_blob"] = ra |
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options["load_streaming"] = not ra |
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file = self.request.get_file() |
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bsdf, self._serializer = get_bsdf_serializer(options) |
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self._stream = self._serializer.load(file) |
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if ( |
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isinstance(self._stream, dict) |
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and "meta" in self._stream |
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and "array" in self._stream |
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): |
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self._stream = Image(self._stream["array"], self._stream["meta"]) |
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if not isinstance(self._stream, (Image, list, bsdf.ListStream)): |
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raise RuntimeError( |
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"BSDF file does not look seem to have an " "image container." |
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) |
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def _close(self): |
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pass |
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def _get_length(self): |
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if isinstance(self._stream, Image): |
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return 1 |
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elif isinstance(self._stream, list): |
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return len(self._stream) |
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elif self._stream.count < 0: |
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return np.inf |
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return self._stream.count |
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def _get_data(self, index): |
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if index < 0 or index >= self.get_length(): |
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raise IndexError( |
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"Image index %i not in [0 %i]." % (index, self.get_length()) |
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) |
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if isinstance(self._stream, Image): |
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image_ob = self._stream |
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elif isinstance(self._stream, list): |
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image_ob = self._stream[index] |
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else: |
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if index < self._stream.index: |
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raise IndexError( |
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"BSDF file is being read in streaming " |
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"mode, thus does not allow rewinding." |
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) |
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while index > self._stream.index: |
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self._stream.next() |
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image_ob = self._stream.next() |
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if ( |
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isinstance(image_ob, dict) |
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and "meta" in image_ob |
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and "array" in image_ob |
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): |
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image_ob = Image(image_ob["array"], image_ob["meta"]) |
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if isinstance(image_ob, Image): |
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return image_ob.get_array(), image_ob.get_meta() |
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else: |
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r = repr(image_ob) |
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r = r if len(r) < 200 else r[:197] + "..." |
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raise RuntimeError("BSDF file contains non-image " + r) |
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def _get_meta_data(self, index): |
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return {} |
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class Writer(Format.Writer): |
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def _open(self, compression=1): |
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options = {"compression": compression} |
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bsdf, self._serializer = get_bsdf_serializer(options) |
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if self.request.mode[1] in "iv": |
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self._stream = None |
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self._written = False |
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else: |
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file = self.request.get_file() |
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self._stream = bsdf.ListStream() |
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self._serializer.save(file, self._stream) |
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def _close(self): |
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if self._stream is not None: |
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self._stream.close(False) |
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def _append_data(self, im, meta): |
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ndim = None |
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if self.request.mode[1] in "iI": |
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ndim = 2 |
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elif self.request.mode[1] in "vV": |
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ndim = 3 |
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else: |
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ndim = 3 |
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if im.ndim == 2 or (im.ndim == 3 and im.shape[-1] <= 4): |
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ndim = 2 |
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assert ndim in (2, 3) |
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if ndim == 2: |
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assert im.ndim == 2 or (im.ndim == 3 and im.shape[-1] <= 4) |
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else: |
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assert im.ndim == 3 or (im.ndim == 4 and im.shape[-1] <= 4) |
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if ndim == 2: |
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ob = Image2D(im, meta) |
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else: |
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ob = Image3D(im, meta) |
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if self._stream is None: |
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assert not self._written, "Cannot write singleton image twice" |
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self._written = True |
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file = self.request.get_file() |
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self._serializer.save(file, ob) |
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else: |
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self._stream.append(ob) |
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def set_meta_data(self, meta): |
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raise RuntimeError("The BSDF format only supports " "per-image meta data.") |
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