| import itertools |
| import functools |
| import operator |
| import numpy as np |
|
|
| from math import prod |
|
|
| from . import _bspl |
|
|
| import scipy.sparse.linalg as ssl |
| from scipy.sparse import csr_array |
|
|
| from ._bsplines import _not_a_knot |
|
|
| __all__ = ["NdBSpline"] |
|
|
|
|
| def _get_dtype(dtype): |
| """Return np.complex128 for complex dtypes, np.float64 otherwise.""" |
| if np.issubdtype(dtype, np.complexfloating): |
| return np.complex128 |
| else: |
| return np.float64 |
|
|
|
|
| class NdBSpline: |
| """Tensor product spline object. |
| |
| The value at point ``xp = (x1, x2, ..., xN)`` is evaluated as a linear |
| combination of products of one-dimensional b-splines in each of the ``N`` |
| dimensions:: |
| |
| c[i1, i2, ..., iN] * B(x1; i1, t1) * B(x2; i2, t2) * ... * B(xN; iN, tN) |
| |
| |
| Here ``B(x; i, t)`` is the ``i``-th b-spline defined by the knot vector |
| ``t`` evaluated at ``x``. |
| |
| Parameters |
| ---------- |
| t : tuple of 1D ndarrays |
| knot vectors in directions 1, 2, ... N, |
| ``len(t[i]) == n[i] + k + 1`` |
| c : ndarray, shape (n1, n2, ..., nN, ...) |
| b-spline coefficients |
| k : int or length-d tuple of integers |
| spline degrees. |
| A single integer is interpreted as having this degree for |
| all dimensions. |
| extrapolate : bool, optional |
| Whether to extrapolate out-of-bounds inputs, or return `nan`. |
| Default is to extrapolate. |
| |
| Attributes |
| ---------- |
| t : tuple of ndarrays |
| Knots vectors. |
| c : ndarray |
| Coefficients of the tensor-product spline. |
| k : tuple of integers |
| Degrees for each dimension. |
| extrapolate : bool, optional |
| Whether to extrapolate or return nans for out-of-bounds inputs. |
| Defaults to true. |
| |
| Methods |
| ------- |
| __call__ |
| design_matrix |
| |
| See Also |
| -------- |
| BSpline : a one-dimensional B-spline object |
| NdPPoly : an N-dimensional piecewise tensor product polynomial |
| |
| """ |
| def __init__(self, t, c, k, *, extrapolate=None): |
| self._k, self._indices_k1d, (self._t, self._len_t) = _preprocess_inputs(k, t) |
|
|
| if extrapolate is None: |
| extrapolate = True |
| self.extrapolate = bool(extrapolate) |
|
|
| self.c = np.asarray(c) |
|
|
| ndim = self._t.shape[0] |
| if self.c.ndim < ndim: |
| raise ValueError(f"Coefficients must be at least {ndim}-dimensional.") |
|
|
| for d in range(ndim): |
| td = self.t[d] |
| kd = self.k[d] |
| n = td.shape[0] - kd - 1 |
|
|
| if self.c.shape[d] != n: |
| raise ValueError(f"Knots, coefficients and degree in dimension" |
| f" {d} are inconsistent:" |
| f" got {self.c.shape[d]} coefficients for" |
| f" {len(td)} knots, need at least {n} for" |
| f" k={k}.") |
|
|
| dt = _get_dtype(self.c.dtype) |
| self.c = np.ascontiguousarray(self.c, dtype=dt) |
|
|
| @property |
| def k(self): |
| return tuple(self._k) |
|
|
| @property |
| def t(self): |
| |
| return tuple(self._t[d, :self._len_t[d]] for d in range(self._t.shape[0])) |
|
|
| def __call__(self, xi, *, nu=None, extrapolate=None): |
| """Evaluate the tensor product b-spline at ``xi``. |
| |
| Parameters |
| ---------- |
| xi : array_like, shape(..., ndim) |
| The coordinates to evaluate the interpolator at. |
| This can be a list or tuple of ndim-dimensional points |
| or an array with the shape (num_points, ndim). |
| nu : array_like, optional, shape (ndim,) |
| Orders of derivatives to evaluate. Each must be non-negative. |
| Defaults to the zeroth derivivative. |
| extrapolate : bool, optional |
| Whether to exrapolate based on first and last intervals in each |
| dimension, or return `nan`. Default is to ``self.extrapolate``. |
| |
| Returns |
| ------- |
| values : ndarray, shape ``xi.shape[:-1] + self.c.shape[ndim:]`` |
| Interpolated values at ``xi`` |
| """ |
| ndim = self._t.shape[0] |
|
|
| if extrapolate is None: |
| extrapolate = self.extrapolate |
| extrapolate = bool(extrapolate) |
|
|
| if nu is None: |
| nu = np.zeros((ndim,), dtype=np.intc) |
| else: |
| nu = np.asarray(nu, dtype=np.intc) |
| if nu.ndim != 1 or nu.shape[0] != ndim: |
| raise ValueError( |
| f"invalid number of derivative orders {nu = } for " |
| f"ndim = {len(self.t)}.") |
| if any(nu < 0): |
| raise ValueError(f"derivatives must be positive, got {nu = }") |
|
|
| |
| xi = np.asarray(xi, dtype=float) |
| xi_shape = xi.shape |
| xi = xi.reshape(-1, xi_shape[-1]) |
| xi = np.ascontiguousarray(xi) |
|
|
| if xi_shape[-1] != ndim: |
| raise ValueError(f"Shapes: xi.shape={xi_shape} and ndim={ndim}") |
|
|
| |
| was_complex = self.c.dtype.kind == 'c' |
| cc = self.c |
| if was_complex and self.c.ndim == ndim: |
| |
| |
| cc = self.c[..., None] |
| cc = cc.view(float) |
|
|
| |
| c1 = cc.reshape(cc.shape[:ndim] + (-1,)) |
| c1r = c1.ravel() |
|
|
| |
| _strides_c1 = np.asarray([s // c1.dtype.itemsize |
| for s in c1.strides], dtype=np.intp) |
|
|
| num_c_tr = c1.shape[-1] |
| out = np.empty(xi.shape[:-1] + (num_c_tr,), dtype=c1.dtype) |
|
|
| _bspl.evaluate_ndbspline(xi, |
| self._t, |
| self._len_t, |
| self._k, |
| nu, |
| extrapolate, |
| c1r, |
| num_c_tr, |
| _strides_c1, |
| self._indices_k1d, |
| out,) |
| out = out.view(self.c.dtype) |
| return out.reshape(xi_shape[:-1] + self.c.shape[ndim:]) |
|
|
| @classmethod |
| def design_matrix(cls, xvals, t, k, extrapolate=True): |
| """Construct the design matrix as a CSR format sparse array. |
| |
| Parameters |
| ---------- |
| xvals : ndarray, shape(npts, ndim) |
| Data points. ``xvals[j, :]`` gives the ``j``-th data point as an |
| ``ndim``-dimensional array. |
| t : tuple of 1D ndarrays, length-ndim |
| Knot vectors in directions 1, 2, ... ndim, |
| k : int |
| B-spline degree. |
| extrapolate : bool, optional |
| Whether to extrapolate out-of-bounds values of raise a `ValueError` |
| |
| Returns |
| ------- |
| design_matrix : a CSR array |
| Each row of the design matrix corresponds to a value in `xvals` and |
| contains values of b-spline basis elements which are non-zero |
| at this value. |
| |
| """ |
| xvals = np.asarray(xvals, dtype=float) |
| ndim = xvals.shape[-1] |
| if len(t) != ndim: |
| raise ValueError( |
| f"Data and knots are inconsistent: len(t) = {len(t)} for " |
| f" {ndim = }." |
| ) |
|
|
| |
| k, _indices_k1d, (_t, len_t) = _preprocess_inputs(k, t) |
|
|
| |
| |
| |
| c_shape = tuple(len_t[d] - k[d] - 1 for d in range(ndim)) |
|
|
| |
| |
| cs = c_shape[1:] + (1,) |
| cstrides = np.cumprod(cs[::-1], dtype=np.intp)[::-1].copy() |
|
|
| |
| data, indices, indptr = _bspl._colloc_nd(xvals, |
| _t, |
| len_t, |
| k, |
| _indices_k1d, |
| cstrides) |
| return csr_array((data, indices, indptr)) |
|
|
|
|
| def _preprocess_inputs(k, t_tpl): |
| """Helpers: validate and preprocess NdBSpline inputs. |
| |
| Parameters |
| ---------- |
| k : int or tuple |
| Spline orders |
| t_tpl : tuple or array-likes |
| Knots. |
| """ |
| |
| if not isinstance(t_tpl, tuple): |
| raise ValueError(f"Expect `t` to be a tuple of array-likes. " |
| f"Got {t_tpl} instead." |
| ) |
|
|
| |
| ndim = len(t_tpl) |
| try: |
| len(k) |
| except TypeError: |
| |
| k = (k,)*ndim |
|
|
| k = np.asarray([operator.index(ki) for ki in k], dtype=np.int32) |
|
|
| if len(k) != ndim: |
| raise ValueError(f"len(t) = {len(t_tpl)} != {len(k) = }.") |
|
|
| |
| ndim = len(t_tpl) |
| for d in range(ndim): |
| td = np.asarray(t_tpl[d]) |
| kd = k[d] |
| n = td.shape[0] - kd - 1 |
| if kd < 0: |
| raise ValueError(f"Spline degree in dimension {d} cannot be" |
| f" negative.") |
| if td.ndim != 1: |
| raise ValueError(f"Knot vector in dimension {d} must be" |
| f" one-dimensional.") |
| if n < kd + 1: |
| raise ValueError(f"Need at least {2*kd + 2} knots for degree" |
| f" {kd} in dimension {d}.") |
| if (np.diff(td) < 0).any(): |
| raise ValueError(f"Knots in dimension {d} must be in a" |
| f" non-decreasing order.") |
| if len(np.unique(td[kd:n + 1])) < 2: |
| raise ValueError(f"Need at least two internal knots in" |
| f" dimension {d}.") |
| if not np.isfinite(td).all(): |
| raise ValueError(f"Knots in dimension {d} should not have" |
| f" nans or infs.") |
|
|
| |
| |
| shape = tuple(kd + 1 for kd in k) |
| indices = np.unravel_index(np.arange(prod(shape)), shape) |
| _indices_k1d = np.asarray(indices, dtype=np.intp).T.copy() |
|
|
| |
| |
| |
| |
| |
| ndim = len(t_tpl) |
| len_t = [len(ti) for ti in t_tpl] |
| _t = np.empty((ndim, max(len_t)), dtype=float) |
| _t.fill(np.nan) |
| for d in range(ndim): |
| _t[d, :len(t_tpl[d])] = t_tpl[d] |
| len_t = np.asarray(len_t, dtype=np.int32) |
|
|
| return k, _indices_k1d, (_t, len_t) |
|
|
|
|
| def _iter_solve(a, b, solver=ssl.gcrotmk, **solver_args): |
| |
|
|
| |
| |
| if np.issubdtype(b.dtype, np.complexfloating): |
| real = _iter_solve(a, b.real, solver, **solver_args) |
| imag = _iter_solve(a, b.imag, solver, **solver_args) |
| return real + 1j*imag |
|
|
| if b.ndim == 2 and b.shape[1] !=1: |
| res = np.empty_like(b) |
| for j in range(b.shape[1]): |
| res[:, j], info = solver(a, b[:, j], **solver_args) |
| if info != 0: |
| raise ValueError(f"{solver = } returns {info =} for column {j}.") |
| return res |
| else: |
| res, info = solver(a, b, **solver_args) |
| if info != 0: |
| raise ValueError(f"{solver = } returns {info = }.") |
| return res |
|
|
|
|
| def make_ndbspl(points, values, k=3, *, solver=ssl.gcrotmk, **solver_args): |
| """Construct an interpolating NdBspline. |
| |
| Parameters |
| ---------- |
| points : tuple of ndarrays of float, with shapes (m1,), ... (mN,) |
| The points defining the regular grid in N dimensions. The points in |
| each dimension (i.e. every element of the `points` tuple) must be |
| strictly ascending or descending. |
| values : ndarray of float, shape (m1, ..., mN, ...) |
| The data on the regular grid in n dimensions. |
| k : int, optional |
| The spline degree. Must be odd. Default is cubic, k=3 |
| solver : a `scipy.sparse.linalg` solver (iterative or direct), optional. |
| An iterative solver from `scipy.sparse.linalg` or a direct one, |
| `sparse.sparse.linalg.spsolve`. |
| Used to solve the sparse linear system |
| ``design_matrix @ coefficients = rhs`` for the coefficients. |
| Default is `scipy.sparse.linalg.gcrotmk` |
| solver_args : dict, optional |
| Additional arguments for the solver. The call signature is |
| ``solver(csr_array, rhs_vector, **solver_args)`` |
| |
| Returns |
| ------- |
| spl : NdBSpline object |
| |
| Notes |
| ----- |
| Boundary conditions are not-a-knot in all dimensions. |
| """ |
| ndim = len(points) |
| xi_shape = tuple(len(x) for x in points) |
|
|
| try: |
| len(k) |
| except TypeError: |
| |
| k = (k,)*ndim |
|
|
| for d, point in enumerate(points): |
| numpts = len(np.atleast_1d(point)) |
| if numpts <= k[d]: |
| raise ValueError(f"There are {numpts} points in dimension {d}," |
| f" but order {k[d]} requires at least " |
| f" {k[d]+1} points per dimension.") |
|
|
| t = tuple(_not_a_knot(np.asarray(points[d], dtype=float), k[d]) |
| for d in range(ndim)) |
| xvals = np.asarray([xv for xv in itertools.product(*points)], dtype=float) |
|
|
| |
| matr = NdBSpline.design_matrix(xvals, t, k) |
|
|
| |
| |
| |
| v_shape = values.shape |
| vals_shape = (prod(v_shape[:ndim]), prod(v_shape[ndim:])) |
| vals = values.reshape(vals_shape) |
|
|
| if solver != ssl.spsolve: |
| solver = functools.partial(_iter_solve, solver=solver) |
| if "atol" not in solver_args: |
| |
| solver_args["atol"] = 1e-6 |
|
|
| coef = solver(matr, vals, **solver_args) |
| coef = coef.reshape(xi_shape + v_shape[ndim:]) |
| return NdBSpline(t, coef, k) |
|
|
|
|