| | """Utilities to deal with sympy.Matrix, numpy and scipy.sparse.""" |
| |
|
| | from sympy.core.expr import Expr |
| | from sympy.core.numbers import I |
| | from sympy.core.singleton import S |
| | from sympy.matrices.matrixbase import MatrixBase |
| | from sympy.matrices import eye, zeros |
| | from sympy.external import import_module |
| |
|
| | __all__ = [ |
| | 'numpy_ndarray', |
| | 'scipy_sparse_matrix', |
| | 'sympy_to_numpy', |
| | 'sympy_to_scipy_sparse', |
| | 'numpy_to_sympy', |
| | 'scipy_sparse_to_sympy', |
| | 'flatten_scalar', |
| | 'matrix_dagger', |
| | 'to_sympy', |
| | 'to_numpy', |
| | 'to_scipy_sparse', |
| | 'matrix_tensor_product', |
| | 'matrix_zeros' |
| | ] |
| |
|
| | |
| | |
| |
|
| | np = import_module('numpy') |
| | if not np: |
| | class numpy_ndarray: |
| | pass |
| | else: |
| | numpy_ndarray = np.ndarray |
| |
|
| | scipy = import_module('scipy', import_kwargs={'fromlist': ['sparse']}) |
| | if not scipy: |
| | class scipy_sparse_matrix: |
| | pass |
| | sparse = None |
| | else: |
| | sparse = scipy.sparse |
| | scipy_sparse_matrix = sparse.spmatrix |
| |
|
| |
|
| | def sympy_to_numpy(m, **options): |
| | """Convert a SymPy Matrix/complex number to a numpy matrix or scalar.""" |
| | if not np: |
| | raise ImportError |
| | dtype = options.get('dtype', 'complex') |
| | if isinstance(m, MatrixBase): |
| | return np.array(m.tolist(), dtype=dtype) |
| | elif isinstance(m, Expr): |
| | if m.is_Number or m.is_NumberSymbol or m == I: |
| | return complex(m) |
| | raise TypeError('Expected MatrixBase or complex scalar, got: %r' % m) |
| |
|
| |
|
| | def sympy_to_scipy_sparse(m, **options): |
| | """Convert a SymPy Matrix/complex number to a numpy matrix or scalar.""" |
| | if not np or not sparse: |
| | raise ImportError |
| | dtype = options.get('dtype', 'complex') |
| | if isinstance(m, MatrixBase): |
| | return sparse.csr_matrix(np.array(m.tolist(), dtype=dtype)) |
| | elif isinstance(m, Expr): |
| | if m.is_Number or m.is_NumberSymbol or m == I: |
| | return complex(m) |
| | raise TypeError('Expected MatrixBase or complex scalar, got: %r' % m) |
| |
|
| |
|
| | def scipy_sparse_to_sympy(m, **options): |
| | """Convert a scipy.sparse matrix to a SymPy matrix.""" |
| | return MatrixBase(m.todense()) |
| |
|
| |
|
| | def numpy_to_sympy(m, **options): |
| | """Convert a numpy matrix to a SymPy matrix.""" |
| | return MatrixBase(m) |
| |
|
| |
|
| | def to_sympy(m, **options): |
| | """Convert a numpy/scipy.sparse matrix to a SymPy matrix.""" |
| | if isinstance(m, MatrixBase): |
| | return m |
| | elif isinstance(m, numpy_ndarray): |
| | return numpy_to_sympy(m) |
| | elif isinstance(m, scipy_sparse_matrix): |
| | return scipy_sparse_to_sympy(m) |
| | elif isinstance(m, Expr): |
| | return m |
| | raise TypeError('Expected sympy/numpy/scipy.sparse matrix, got: %r' % m) |
| |
|
| |
|
| | def to_numpy(m, **options): |
| | """Convert a sympy/scipy.sparse matrix to a numpy matrix.""" |
| | dtype = options.get('dtype', 'complex') |
| | if isinstance(m, (MatrixBase, Expr)): |
| | return sympy_to_numpy(m, dtype=dtype) |
| | elif isinstance(m, numpy_ndarray): |
| | return m |
| | elif isinstance(m, scipy_sparse_matrix): |
| | return m.todense() |
| | raise TypeError('Expected sympy/numpy/scipy.sparse matrix, got: %r' % m) |
| |
|
| |
|
| | def to_scipy_sparse(m, **options): |
| | """Convert a sympy/numpy matrix to a scipy.sparse matrix.""" |
| | dtype = options.get('dtype', 'complex') |
| | if isinstance(m, (MatrixBase, Expr)): |
| | return sympy_to_scipy_sparse(m, dtype=dtype) |
| | elif isinstance(m, numpy_ndarray): |
| | if not sparse: |
| | raise ImportError |
| | return sparse.csr_matrix(m) |
| | elif isinstance(m, scipy_sparse_matrix): |
| | return m |
| | raise TypeError('Expected sympy/numpy/scipy.sparse matrix, got: %r' % m) |
| |
|
| |
|
| | def flatten_scalar(e): |
| | """Flatten a 1x1 matrix to a scalar, return larger matrices unchanged.""" |
| | if isinstance(e, MatrixBase): |
| | if e.shape == (1, 1): |
| | e = e[0] |
| | if isinstance(e, (numpy_ndarray, scipy_sparse_matrix)): |
| | if e.shape == (1, 1): |
| | e = complex(e[0, 0]) |
| | return e |
| |
|
| |
|
| | def matrix_dagger(e): |
| | """Return the dagger of a sympy/numpy/scipy.sparse matrix.""" |
| | if isinstance(e, MatrixBase): |
| | return e.H |
| | elif isinstance(e, (numpy_ndarray, scipy_sparse_matrix)): |
| | return e.conjugate().transpose() |
| | raise TypeError('Expected sympy/numpy/scipy.sparse matrix, got: %r' % e) |
| |
|
| |
|
| | |
| | def _sympy_tensor_product(*matrices): |
| | """Compute the kronecker product of a sequence of SymPy Matrices. |
| | """ |
| | from sympy.matrices.expressions.kronecker import matrix_kronecker_product |
| |
|
| | return matrix_kronecker_product(*matrices) |
| |
|
| |
|
| | def _numpy_tensor_product(*product): |
| | """numpy version of tensor product of multiple arguments.""" |
| | if not np: |
| | raise ImportError |
| | answer = product[0] |
| | for item in product[1:]: |
| | answer = np.kron(answer, item) |
| | return answer |
| |
|
| |
|
| | def _scipy_sparse_tensor_product(*product): |
| | """scipy.sparse version of tensor product of multiple arguments.""" |
| | if not sparse: |
| | raise ImportError |
| | answer = product[0] |
| | for item in product[1:]: |
| | answer = sparse.kron(answer, item) |
| | |
| | |
| | return sparse.csr_matrix(answer) |
| |
|
| |
|
| | def matrix_tensor_product(*product): |
| | """Compute the matrix tensor product of sympy/numpy/scipy.sparse matrices.""" |
| | if isinstance(product[0], MatrixBase): |
| | return _sympy_tensor_product(*product) |
| | elif isinstance(product[0], numpy_ndarray): |
| | return _numpy_tensor_product(*product) |
| | elif isinstance(product[0], scipy_sparse_matrix): |
| | return _scipy_sparse_tensor_product(*product) |
| |
|
| |
|
| | def _numpy_eye(n): |
| | """numpy version of complex eye.""" |
| | if not np: |
| | raise ImportError |
| | return np.array(np.eye(n, dtype='complex')) |
| |
|
| |
|
| | def _scipy_sparse_eye(n): |
| | """scipy.sparse version of complex eye.""" |
| | if not sparse: |
| | raise ImportError |
| | return sparse.eye(n, n, dtype='complex') |
| |
|
| |
|
| | def matrix_eye(n, **options): |
| | """Get the version of eye and tensor_product for a given format.""" |
| | format = options.get('format', 'sympy') |
| | if format == 'sympy': |
| | return eye(n) |
| | elif format == 'numpy': |
| | return _numpy_eye(n) |
| | elif format == 'scipy.sparse': |
| | return _scipy_sparse_eye(n) |
| | raise NotImplementedError('Invalid format: %r' % format) |
| |
|
| |
|
| | def _numpy_zeros(m, n, **options): |
| | """numpy version of zeros.""" |
| | dtype = options.get('dtype', 'float64') |
| | if not np: |
| | raise ImportError |
| | return np.zeros((m, n), dtype=dtype) |
| |
|
| |
|
| | def _scipy_sparse_zeros(m, n, **options): |
| | """scipy.sparse version of zeros.""" |
| | spmatrix = options.get('spmatrix', 'csr') |
| | dtype = options.get('dtype', 'float64') |
| | if not sparse: |
| | raise ImportError |
| | if spmatrix == 'lil': |
| | return sparse.lil_matrix((m, n), dtype=dtype) |
| | elif spmatrix == 'csr': |
| | return sparse.csr_matrix((m, n), dtype=dtype) |
| |
|
| |
|
| | def matrix_zeros(m, n, **options): |
| | """"Get a zeros matrix for a given format.""" |
| | format = options.get('format', 'sympy') |
| | if format == 'sympy': |
| | return zeros(m, n) |
| | elif format == 'numpy': |
| | return _numpy_zeros(m, n, **options) |
| | elif format == 'scipy.sparse': |
| | return _scipy_sparse_zeros(m, n, **options) |
| | raise NotImplementedError('Invaild format: %r' % format) |
| |
|
| |
|
| | def _numpy_matrix_to_zero(e): |
| | """Convert a numpy zero matrix to the zero scalar.""" |
| | if not np: |
| | raise ImportError |
| | test = np.zeros_like(e) |
| | if np.allclose(e, test): |
| | return 0.0 |
| | else: |
| | return e |
| |
|
| |
|
| | def _scipy_sparse_matrix_to_zero(e): |
| | """Convert a scipy.sparse zero matrix to the zero scalar.""" |
| | if not np: |
| | raise ImportError |
| | edense = e.todense() |
| | test = np.zeros_like(edense) |
| | if np.allclose(edense, test): |
| | return 0.0 |
| | else: |
| | return e |
| |
|
| |
|
| | def matrix_to_zero(e): |
| | """Convert a zero matrix to the scalar zero.""" |
| | if isinstance(e, MatrixBase): |
| | if zeros(*e.shape) == e: |
| | e = S.Zero |
| | elif isinstance(e, numpy_ndarray): |
| | e = _numpy_matrix_to_zero(e) |
| | elif isinstance(e, scipy_sparse_matrix): |
| | e = _scipy_sparse_matrix_to_zero(e) |
| | return e |
| |
|