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import numbers |
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import numpy |
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import cupy |
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def _round_if_needed(arr, dtype): |
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"""Rounds arr inplace if the destination dtype is an integer. |
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""" |
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if cupy.issubdtype(dtype, cupy.integer): |
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arr.round(out=arr) |
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def _slice_at_axis(sl, axis): |
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"""Constructs a tuple of slices to slice an array in the given dimension. |
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Args: |
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sl(slice): The slice for the given dimension. |
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axis(int): The axis to which `sl` is applied. All other dimensions are |
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left "unsliced". |
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Returns: |
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tuple of slices: A tuple with slices matching `shape` in length. |
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""" |
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return (slice(None),) * axis + (sl,) + (Ellipsis,) |
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def _view_roi(array, original_area_slice, axis): |
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"""Gets a view of the current region of interest during iterative padding. |
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When padding multiple dimensions iteratively corner values are |
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unnecessarily overwritten multiple times. This function reduces the |
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working area for the first dimensions so that corners are excluded. |
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Args: |
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array(cupy.ndarray): The array with the region of interest. |
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original_area_slice(tuple of slices): Denotes the area with original |
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values of the unpadded array. |
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axis(int): The currently padded dimension assuming that `axis` is padded |
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before `axis` + 1. |
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Returns: |
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""" |
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axis += 1 |
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sl = (slice(None),) * axis + original_area_slice[axis:] |
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return array[sl] |
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def _pad_simple(array, pad_width, fill_value=None): |
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"""Pads an array on all sides with either a constant or undefined values. |
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Args: |
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array(cupy.ndarray): Array to grow. |
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pad_width(sequence of tuple[int, int]): Pad width on both sides for each |
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dimension in `arr`. |
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fill_value(scalar, optional): If provided the padded area is |
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filled with this value, otherwise the pad area left undefined. |
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(Default value = None) |
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""" |
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new_shape = tuple( |
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left + size + right |
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for size, (left, right) in zip(array.shape, pad_width) |
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) |
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order = 'F' if array.flags.fnc else 'C' |
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padded = cupy.empty(new_shape, dtype=array.dtype, order=order) |
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if fill_value is not None: |
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padded.fill(fill_value) |
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original_area_slice = tuple( |
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slice(left, left + size) |
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for size, (left, right) in zip(array.shape, pad_width) |
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) |
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padded[original_area_slice] = array |
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return padded, original_area_slice |
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def _set_pad_area(padded, axis, width_pair, value_pair): |
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"""Set an empty-padded area in given dimension. |
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""" |
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left_slice = _slice_at_axis(slice(None, width_pair[0]), axis) |
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padded[left_slice] = value_pair[0] |
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right_slice = _slice_at_axis( |
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slice(padded.shape[axis] - width_pair[1], None), axis |
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) |
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padded[right_slice] = value_pair[1] |
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def _get_edges(padded, axis, width_pair): |
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"""Retrieves edge values from an empty-padded array along a given axis. |
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Args: |
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padded(cupy.ndarray): Empty-padded array. |
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axis(int): Dimension in which the edges are considered. |
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width_pair((int, int)): Pair of widths that mark the pad area on both |
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sides in the given dimension. |
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""" |
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left_index = width_pair[0] |
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left_slice = _slice_at_axis(slice(left_index, left_index + 1), axis) |
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left_edge = padded[left_slice] |
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right_index = padded.shape[axis] - width_pair[1] |
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right_slice = _slice_at_axis(slice(right_index - 1, right_index), axis) |
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right_edge = padded[right_slice] |
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return left_edge, right_edge |
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def _get_linear_ramps(padded, axis, width_pair, end_value_pair): |
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"""Constructs linear ramps for an empty-padded array along a given axis. |
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Args: |
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padded(cupy.ndarray): Empty-padded array. |
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axis(int): Dimension in which the ramps are constructed. |
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width_pair((int, int)): Pair of widths that mark the pad area on both |
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sides in the given dimension. |
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end_value_pair((scalar, scalar)): End values for the linear ramps which |
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form the edge of the fully padded array. These values are included in |
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the linear ramps. |
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""" |
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edge_pair = _get_edges(padded, axis, width_pair) |
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left_ramp = cupy.linspace( |
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start=end_value_pair[0], |
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stop=edge_pair[0].squeeze(axis), |
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num=width_pair[0], |
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endpoint=False, |
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dtype=padded.dtype, |
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axis=axis, |
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) |
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right_ramp = cupy.linspace( |
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start=end_value_pair[1], |
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stop=edge_pair[1].squeeze(axis), |
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num=width_pair[1], |
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endpoint=False, |
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dtype=padded.dtype, |
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axis=axis, |
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) |
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right_ramp = right_ramp[_slice_at_axis(slice(None, None, -1), axis)] |
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return left_ramp, right_ramp |
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def _get_stats(padded, axis, width_pair, length_pair, stat_func): |
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"""Calculates a statistic for an empty-padded array along a given axis. |
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Args: |
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padded(cupy.ndarray): Empty-padded array. |
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axis(int): Dimension in which the statistic is calculated. |
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width_pair((int, int)): Pair of widths that mark the pad area on both |
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sides in the given dimension. |
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length_pair(2-element sequence of None or int): Gives the number of |
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values in valid area from each side that is taken into account when |
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calculating the statistic. If None the entire valid area in `padded` |
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is considered. |
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stat_func(function): Function to compute statistic. The expected |
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signature is |
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``stat_func(x: ndarray, axis: int, keepdims: bool) -> ndarray``. |
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""" |
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left_index = width_pair[0] |
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right_index = padded.shape[axis] - width_pair[1] |
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max_length = right_index - left_index |
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left_length, right_length = length_pair |
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if left_length is None or max_length < left_length: |
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left_length = max_length |
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if right_length is None or max_length < right_length: |
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right_length = max_length |
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left_slice = _slice_at_axis( |
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slice(left_index, left_index + left_length), axis |
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) |
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left_chunk = padded[left_slice] |
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left_stat = stat_func(left_chunk, axis=axis, keepdims=True) |
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_round_if_needed(left_stat, padded.dtype) |
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if left_length == right_length == max_length: |
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return left_stat, left_stat |
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right_slice = _slice_at_axis( |
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slice(right_index - right_length, right_index), axis |
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) |
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right_chunk = padded[right_slice] |
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right_stat = stat_func(right_chunk, axis=axis, keepdims=True) |
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_round_if_needed(right_stat, padded.dtype) |
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return left_stat, right_stat |
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def _set_reflect_both(padded, axis, width_pair, method, include_edge=False): |
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"""Pads an `axis` of `arr` using reflection. |
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Args: |
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padded(cupy.ndarray): Input array of arbitrary shape. |
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axis(int): Axis along which to pad `arr`. |
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width_pair((int, int)): Pair of widths that mark the pad area on both |
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sides in the given dimension. |
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method(str): Controls method of reflection; options are 'even' or 'odd'. |
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include_edge(bool, optional): If true, edge value is included in |
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reflection, otherwise the edge value forms the symmetric axis to the |
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reflection. (Default value = False) |
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""" |
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left_pad, right_pad = width_pair |
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old_length = padded.shape[axis] - right_pad - left_pad |
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if include_edge: |
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edge_offset = 1 |
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else: |
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edge_offset = 0 |
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old_length -= 1 |
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if left_pad > 0: |
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chunk_length = min(old_length, left_pad) |
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stop = left_pad - edge_offset |
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start = stop + chunk_length |
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left_slice = _slice_at_axis(slice(start, stop, -1), axis) |
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left_chunk = padded[left_slice] |
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if method == 'odd': |
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edge_slice = _slice_at_axis(slice(left_pad, left_pad + 1), axis) |
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left_chunk = 2 * padded[edge_slice] - left_chunk |
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start = left_pad - chunk_length |
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stop = left_pad |
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pad_area = _slice_at_axis(slice(start, stop), axis) |
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padded[pad_area] = left_chunk |
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left_pad -= chunk_length |
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if right_pad > 0: |
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chunk_length = min(old_length, right_pad) |
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start = -right_pad + edge_offset - 2 |
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stop = start - chunk_length |
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right_slice = _slice_at_axis(slice(start, stop, -1), axis) |
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right_chunk = padded[right_slice] |
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if method == 'odd': |
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edge_slice = _slice_at_axis( |
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slice(-right_pad - 1, -right_pad), axis |
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) |
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right_chunk = 2 * padded[edge_slice] - right_chunk |
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start = padded.shape[axis] - right_pad |
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stop = start + chunk_length |
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pad_area = _slice_at_axis(slice(start, stop), axis) |
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padded[pad_area] = right_chunk |
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right_pad -= chunk_length |
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return left_pad, right_pad |
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def _set_wrap_both(padded, axis, width_pair): |
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"""Pads an `axis` of `arr` with wrapped values. |
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Args: |
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padded(cupy.ndarray): Input array of arbitrary shape. |
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axis(int): Axis along which to pad `arr`. |
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width_pair((int, int)): Pair of widths that mark the pad area on both |
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sides in the given dimension. |
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""" |
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left_pad, right_pad = width_pair |
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period = padded.shape[axis] - right_pad - left_pad |
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new_left_pad = 0 |
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new_right_pad = 0 |
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if left_pad > 0: |
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right_slice = _slice_at_axis( |
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slice( |
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-right_pad - min(period, left_pad), |
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-right_pad if right_pad != 0 else None, |
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), |
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axis, |
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) |
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right_chunk = padded[right_slice] |
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if left_pad > period: |
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pad_area = _slice_at_axis(slice(left_pad - period, left_pad), axis) |
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new_left_pad = left_pad - period |
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else: |
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pad_area = _slice_at_axis(slice(None, left_pad), axis) |
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padded[pad_area] = right_chunk |
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if right_pad > 0: |
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left_slice = _slice_at_axis( |
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slice(left_pad, left_pad + min(period, right_pad)), axis |
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) |
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left_chunk = padded[left_slice] |
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if right_pad > period: |
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pad_area = _slice_at_axis( |
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slice(-right_pad, -right_pad + period), axis |
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) |
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new_right_pad = right_pad - period |
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else: |
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pad_area = _slice_at_axis(slice(-right_pad, None), axis) |
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padded[pad_area] = left_chunk |
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return new_left_pad, new_right_pad |
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def _as_pairs(x, ndim, as_index=False): |
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"""Broadcasts `x` to an array with shape (`ndim`, 2). |
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A helper function for `pad` that prepares and validates arguments like |
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`pad_width` for iteration in pairs. |
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Args: |
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x(scalar or array-like, optional): The object to broadcast to the shape |
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(`ndim`, 2). |
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ndim(int): Number of pairs the broadcasted `x` will have. |
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as_index(bool, optional): If `x` is not None, try to round each |
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element of `x` to an integer (dtype `cupy.intp`) and ensure every |
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element is positive. (Default value = False) |
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Returns: |
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nested iterables, shape (`ndim`, 2): The broadcasted version of `x`. |
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""" |
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if x is None: |
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return ((None, None),) * ndim |
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elif isinstance(x, numbers.Number): |
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if as_index: |
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x = round(x) |
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return ((x, x),) * ndim |
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x = numpy.array(x) |
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if as_index: |
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x = numpy.asarray(numpy.round(x), dtype=numpy.intp) |
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if x.ndim < 3: |
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if x.size == 1: |
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x = x.ravel() |
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if as_index and x < 0: |
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raise ValueError("index can't contain negative values") |
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return ((x[0], x[0]),) * ndim |
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if x.size == 2 and x.shape != (2, 1): |
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x = x.ravel() |
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if as_index and (x[0] < 0 or x[1] < 0): |
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raise ValueError("index can't contain negative values") |
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return ((x[0], x[1]),) * ndim |
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if as_index and x.min() < 0: |
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raise ValueError("index can't contain negative values") |
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x_view = x.view() |
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x_view.shape = (ndim, 2) |
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return x_view.tolist() |
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def pad(array, pad_width, mode='constant', **kwargs): |
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"""Pads an array with specified widths and values. |
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Args: |
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array(cupy.ndarray): The array to pad. |
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pad_width(sequence, array_like or int): Number of values padded to the |
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edges of each axis. ((before_1, after_1), ... (before_N, after_N)) |
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unique pad widths for each axis. ((before, after),) yields same |
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before and after pad for each axis. (pad,) or int is a shortcut for |
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before = after = pad width for all axes. You cannot specify |
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``cupy.ndarray``. |
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mode(str or function, optional): One of the following string values or a |
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user supplied function |
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'constant' (default) |
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Pads with a constant value. |
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'edge' |
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Pads with the edge values of array. |
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'linear_ramp' |
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Pads with the linear ramp between end_value and the array edge |
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value. |
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'maximum' |
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Pads with the maximum value of all or part of the vector along |
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each axis. |
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'mean' |
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Pads with the mean value of all or part of the vector along each |
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axis. |
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'median' |
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Pads with the median value of all or part of the vector along |
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each axis. (Not Implemented) |
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'minimum' |
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Pads with the minimum value of all or part of the vector along |
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each axis. |
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'reflect' |
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Pads with the reflection of the vector mirrored on the first and |
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last values of the vector along each axis. |
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'symmetric' |
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Pads with the reflection of the vector mirrored along the edge |
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of the array. |
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'wrap' |
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Pads with the wrap of the vector along the axis. The first |
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values are used to pad the end and the end values are used to |
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pad the beginning. |
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'empty' |
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Pads with undefined values. |
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<function> |
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Padding function, see Notes. |
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stat_length(sequence or int, optional): Used in 'maximum', 'mean', |
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'median', and 'minimum'. Number of values at edge of each axis used |
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to calculate the statistic value. |
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((before_1, after_1), ... (before_N, after_N)) unique statistic |
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lengths for each axis. ((before, after),) yields same before and |
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after statistic lengths for each axis. (stat_length,) or int is a |
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shortcut for before = after = statistic length for all axes. |
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Default is ``None``, to use the entire axis. You cannot specify |
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``cupy.ndarray``. |
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constant_values(sequence or scalar, optional): Used in 'constant'. The |
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values to set the padded values for each axis. |
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((before_1, after_1), ... (before_N, after_N)) unique pad constants |
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for each axis. |
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((before, after),) yields same before and after constants for each |
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axis. |
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(constant,) or constant is a shortcut for before = after = constant |
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for all axes. |
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Default is 0. You cannot specify ``cupy.ndarray``. |
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end_values(sequence or scalar, optional): Used in 'linear_ramp'. The |
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values used for the ending value of the linear_ramp and that will |
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form the edge of the padded array. |
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((before_1, after_1), ... (before_N, after_N)) unique end values |
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for each axis. |
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((before, after),) yields same before and after end |
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values for each axis. |
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(constant,) or constant is a shortcut for before = after = constant |
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for all axes. |
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Default is 0. You cannot specify ``cupy.ndarray``. |
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reflect_type({'even', 'odd'}, optional): Used in 'reflect', and |
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'symmetric'. The 'even' style is the default with an unaltered |
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|
reflection around the edge value. For the 'odd' style, the extended |
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part of the array is created by subtracting the reflected values from |
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two times the edge value. |
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|
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Returns: |
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cupy.ndarray: Padded array with shape extended by ``pad_width``. |
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.. note:: |
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For an array with rank greater than 1, some of the padding of later |
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axes is calculated from padding of previous axes. This is easiest to |
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think about with a rank 2 array where the corners of the padded array |
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are calculated by using padded values from the first axis. |
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The padding function, if used, should modify a rank 1 array in-place. |
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It has the following signature: |
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``padding_func(vector, iaxis_pad_width, iaxis, kwargs)`` |
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where |
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vector (cupy.ndarray) |
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A rank 1 array already padded with zeros. Padded values are |
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``vector[:iaxis_pad_width[0]]`` and |
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``vector[-iaxis_pad_width[1]:]``. |
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iaxis_pad_width (tuple) |
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A 2-tuple of ints, ``iaxis_pad_width[0]`` represents the number of |
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|
values padded at the beginning of vector where |
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``iaxis_pad_width[1]`` represents the number of values padded at |
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|
the end of vector. |
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|
iaxis (int) |
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The axis currently being calculated. |
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kwargs (dict) |
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Any keyword arguments the function requires. |
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|
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Examples |
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-------- |
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>>> a = cupy.array([1, 2, 3, 4, 5]) |
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>>> cupy.pad(a, (2, 3), 'constant', constant_values=(4, 6)) |
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array([4, 4, 1, ..., 6, 6, 6]) |
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|
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>>> cupy.pad(a, (2, 3), 'edge') |
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array([1, 1, 1, ..., 5, 5, 5]) |
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>>> cupy.pad(a, (2, 3), 'linear_ramp', end_values=(5, -4)) |
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array([ 5, 3, 1, 2, 3, 4, 5, 2, -1, -4]) |
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|
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>>> cupy.pad(a, (2,), 'maximum') |
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array([5, 5, 1, 2, 3, 4, 5, 5, 5]) |
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>>> cupy.pad(a, (2,), 'mean') |
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array([3, 3, 1, 2, 3, 4, 5, 3, 3]) |
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>>> a = cupy.array([[1, 2], [3, 4]]) |
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>>> cupy.pad(a, ((3, 2), (2, 3)), 'minimum') |
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array([[1, 1, 1, 2, 1, 1, 1], |
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[1, 1, 1, 2, 1, 1, 1], |
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[1, 1, 1, 2, 1, 1, 1], |
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[1, 1, 1, 2, 1, 1, 1], |
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[3, 3, 3, 4, 3, 3, 3], |
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[1, 1, 1, 2, 1, 1, 1], |
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[1, 1, 1, 2, 1, 1, 1]]) |
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>>> a = cupy.array([1, 2, 3, 4, 5]) |
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>>> cupy.pad(a, (2, 3), 'reflect') |
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array([3, 2, 1, 2, 3, 4, 5, 4, 3, 2]) |
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>>> cupy.pad(a, (2, 3), 'reflect', reflect_type='odd') |
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array([-1, 0, 1, 2, 3, 4, 5, 6, 7, 8]) |
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>>> cupy.pad(a, (2, 3), 'symmetric') |
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array([2, 1, 1, 2, 3, 4, 5, 5, 4, 3]) |
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>>> cupy.pad(a, (2, 3), 'symmetric', reflect_type='odd') |
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array([0, 1, 1, 2, 3, 4, 5, 5, 6, 7]) |
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>>> cupy.pad(a, (2, 3), 'wrap') |
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array([4, 5, 1, 2, 3, 4, 5, 1, 2, 3]) |
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>>> def pad_with(vector, pad_width, iaxis, kwargs): |
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... pad_value = kwargs.get('padder', 10) |
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|
... vector[:pad_width[0]] = pad_value |
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|
... vector[-pad_width[1]:] = pad_value |
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|
>>> a = cupy.arange(6) |
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|
>>> a = a.reshape((2, 3)) |
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|
>>> cupy.pad(a, 2, pad_with) |
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array([[10, 10, 10, 10, 10, 10, 10], |
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[10, 10, 10, 10, 10, 10, 10], |
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|
[10, 10, 0, 1, 2, 10, 10], |
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|
[10, 10, 3, 4, 5, 10, 10], |
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|
[10, 10, 10, 10, 10, 10, 10], |
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|
[10, 10, 10, 10, 10, 10, 10]]) |
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|
>>> cupy.pad(a, 2, pad_with, padder=100) |
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|
array([[100, 100, 100, 100, 100, 100, 100], |
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|
[100, 100, 100, 100, 100, 100, 100], |
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|
[100, 100, 0, 1, 2, 100, 100], |
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|
[100, 100, 3, 4, 5, 100, 100], |
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|
[100, 100, 100, 100, 100, 100, 100], |
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|
[100, 100, 100, 100, 100, 100, 100]]) |
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|
""" |
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|
if isinstance(pad_width, numbers.Integral): |
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|
pad_width = ((pad_width, pad_width),) * array.ndim |
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|
else: |
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|
pad_width = numpy.asarray(pad_width) |
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|
|
if not pad_width.dtype.kind == 'i': |
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|
raise TypeError('`pad_width` must be of integral type.') |
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|
pad_width = _as_pairs(pad_width, array.ndim, as_index=True) |
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|
|
if callable(mode): |
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|
function = mode |
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|
padded, _ = _pad_simple(array, pad_width, fill_value=0) |
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|
for axis in range(padded.ndim): |
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|
view = cupy.moveaxis(padded, axis, -1) |
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|
|
inds = numpy.ndindex(view.shape[:-1]) |
|
|
inds = (ind + (Ellipsis,) for ind in inds) |
|
|
for ind in inds: |
|
|
function(view[ind], pad_width[axis], axis, kwargs) |
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|
|
return padded |
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|
|
|
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|
|
allowed_kwargs = { |
|
|
'empty': [], |
|
|
'edge': [], |
|
|
'wrap': [], |
|
|
'constant': ['constant_values'], |
|
|
'linear_ramp': ['end_values'], |
|
|
'maximum': ['stat_length'], |
|
|
'mean': ['stat_length'], |
|
|
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|
|
'minimum': ['stat_length'], |
|
|
'reflect': ['reflect_type'], |
|
|
'symmetric': ['reflect_type'], |
|
|
} |
|
|
try: |
|
|
unsupported_kwargs = set(kwargs) - set(allowed_kwargs[mode]) |
|
|
except KeyError: |
|
|
raise ValueError("mode '{}' is not supported".format(mode)) |
|
|
if unsupported_kwargs: |
|
|
raise ValueError( |
|
|
"unsupported keyword arguments for mode '{}': {}".format( |
|
|
mode, unsupported_kwargs |
|
|
) |
|
|
) |
|
|
|
|
|
if mode == 'constant': |
|
|
values = kwargs.get('constant_values', 0) |
|
|
if isinstance(values, numbers.Number) and values == 0 and ( |
|
|
array.ndim == 1 or array.size < 4e6): |
|
|
|
|
|
return _pad_simple(array, pad_width, 0)[0] |
|
|
|
|
|
stat_functions = { |
|
|
'maximum': cupy.max, |
|
|
'minimum': cupy.min, |
|
|
'mean': cupy.mean, |
|
|
|
|
|
} |
|
|
|
|
|
|
|
|
|
|
|
padded, original_area_slice = _pad_simple(array, pad_width) |
|
|
|
|
|
|
|
|
axes = range(padded.ndim) |
|
|
|
|
|
if mode == 'constant': |
|
|
values = _as_pairs(values, padded.ndim) |
|
|
for axis, width_pair, value_pair in zip(axes, pad_width, values): |
|
|
roi = _view_roi(padded, original_area_slice, axis) |
|
|
_set_pad_area(roi, axis, width_pair, value_pair) |
|
|
|
|
|
elif mode == 'empty': |
|
|
pass |
|
|
|
|
|
elif array.size == 0: |
|
|
|
|
|
|
|
|
|
|
|
for axis, width_pair in zip(axes, pad_width): |
|
|
if array.shape[axis] == 0 and any(width_pair): |
|
|
raise ValueError( |
|
|
"can't extend empty axis {} using modes other than " |
|
|
"'constant' or 'empty'".format(axis) |
|
|
) |
|
|
|
|
|
|
|
|
|
|
|
elif mode == 'edge': |
|
|
for axis, width_pair in zip(axes, pad_width): |
|
|
roi = _view_roi(padded, original_area_slice, axis) |
|
|
edge_pair = _get_edges(roi, axis, width_pair) |
|
|
_set_pad_area(roi, axis, width_pair, edge_pair) |
|
|
|
|
|
elif mode == 'linear_ramp': |
|
|
end_values = kwargs.get('end_values', 0) |
|
|
end_values = _as_pairs(end_values, padded.ndim) |
|
|
for axis, width_pair, value_pair in zip(axes, pad_width, end_values): |
|
|
roi = _view_roi(padded, original_area_slice, axis) |
|
|
ramp_pair = _get_linear_ramps(roi, axis, width_pair, value_pair) |
|
|
_set_pad_area(roi, axis, width_pair, ramp_pair) |
|
|
|
|
|
elif mode in stat_functions: |
|
|
func = stat_functions[mode] |
|
|
length = kwargs.get('stat_length', None) |
|
|
length = _as_pairs(length, padded.ndim, as_index=True) |
|
|
for axis, width_pair, length_pair in zip(axes, pad_width, length): |
|
|
roi = _view_roi(padded, original_area_slice, axis) |
|
|
stat_pair = _get_stats(roi, axis, width_pair, length_pair, func) |
|
|
_set_pad_area(roi, axis, width_pair, stat_pair) |
|
|
|
|
|
elif mode in {'reflect', 'symmetric'}: |
|
|
method = kwargs.get('reflect_type', 'even') |
|
|
include_edge = True if mode == 'symmetric' else False |
|
|
for axis, (left_index, right_index) in zip(axes, pad_width): |
|
|
if array.shape[axis] == 1 and (left_index > 0 or right_index > 0): |
|
|
|
|
|
|
|
|
edge_pair = _get_edges(padded, axis, (left_index, right_index)) |
|
|
_set_pad_area( |
|
|
padded, axis, (left_index, right_index), edge_pair |
|
|
) |
|
|
continue |
|
|
|
|
|
roi = _view_roi(padded, original_area_slice, axis) |
|
|
while left_index > 0 or right_index > 0: |
|
|
|
|
|
|
|
|
|
|
|
left_index, right_index = _set_reflect_both( |
|
|
roi, axis, (left_index, right_index), method, include_edge |
|
|
) |
|
|
|
|
|
elif mode == 'wrap': |
|
|
for axis, (left_index, right_index) in zip(axes, pad_width): |
|
|
roi = _view_roi(padded, original_area_slice, axis) |
|
|
while left_index > 0 or right_index > 0: |
|
|
|
|
|
|
|
|
|
|
|
left_index, right_index = _set_wrap_both( |
|
|
roi, axis, (left_index, right_index) |
|
|
) |
|
|
|
|
|
return padded |
|
|
|