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wemm/lib/python3.10/site-packages/networkx/algorithms/coloring/greedy_coloring.py

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+"""
+Greedy graph coloring using various strategies.
+"""
+
+import itertools
+from collections import defaultdict, deque
+
+import networkx as nx
+from networkx.utils import arbitrary_element, py_random_state
+
+__all__ = [
+    "greedy_color",
+    "strategy_connected_sequential",
+    "strategy_connected_sequential_bfs",
+    "strategy_connected_sequential_dfs",
+    "strategy_independent_set",
+    "strategy_largest_first",
+    "strategy_random_sequential",
+    "strategy_saturation_largest_first",
+    "strategy_smallest_last",
+]
+
+
+def strategy_largest_first(G, colors):
+    """Returns a list of the nodes of ``G`` in decreasing order by
+    degree.
+
+    ``G`` is a NetworkX graph. ``colors`` is ignored.
+
+    """
+    return sorted(G, key=G.degree, reverse=True)
+
+
+@py_random_state(2)
+def strategy_random_sequential(G, colors, seed=None):
+    """Returns a random permutation of the nodes of ``G`` as a list.
+
+    ``G`` is a NetworkX graph. ``colors`` is ignored.
+
+    seed : integer, random_state, or None (default)
+        Indicator of random number generation state.
+        See :ref:`Randomness<randomness>`.
+    """
+    nodes = list(G)
+    seed.shuffle(nodes)
+    return nodes
+
+
+def strategy_smallest_last(G, colors):
+    """Returns a deque of the nodes of ``G``, "smallest" last.
+
+    Specifically, the degrees of each node are tracked in a bucket queue.
+    From this, the node of minimum degree is repeatedly popped from the
+    graph, updating its neighbors' degrees.
+
+    ``G`` is a NetworkX graph. ``colors`` is ignored.
+
+    This implementation of the strategy runs in $O(n + m)$ time
+    (ignoring polylogarithmic factors), where $n$ is the number of nodes
+    and $m$ is the number of edges.
+
+    This strategy is related to :func:`strategy_independent_set`: if we
+    interpret each node removed as an independent set of size one, then
+    this strategy chooses an independent set of size one instead of a
+    maximal independent set.
+
+    """
+    H = G.copy()
+    result = deque()
+
+    # Build initial degree list (i.e. the bucket queue data structure)
+    degrees = defaultdict(set)  # set(), for fast random-access removals
+    lbound = float("inf")
+    for node, d in H.degree():
+        degrees[d].add(node)
+        lbound = min(lbound, d)  # Lower bound on min-degree.
+
+    def find_min_degree():
+        # Save time by starting the iterator at `lbound`, not 0.
+        # The value that we find will be our new `lbound`, which we set later.
+        return next(d for d in itertools.count(lbound) if d in degrees)
+
+    for _ in G:
+        # Pop a min-degree node and add it to the list.
+        min_degree = find_min_degree()
+        u = degrees[min_degree].pop()
+        if not degrees[min_degree]:  # Clean up the degree list.
+            del degrees[min_degree]
+        result.appendleft(u)
+
+        # Update degrees of removed node's neighbors.
+        for v in H[u]:
+            degree = H.degree(v)
+            degrees[degree].remove(v)
+            if not degrees[degree]:  # Clean up the degree list.
+                del degrees[degree]
+            degrees[degree - 1].add(v)
+
+        # Finally, remove the node.
+        H.remove_node(u)
+        lbound = min_degree - 1  # Subtract 1 in case of tied neighbors.
+
+    return result
+
+
+def _maximal_independent_set(G):
+    """Returns a maximal independent set of nodes in ``G`` by repeatedly
+    choosing an independent node of minimum degree (with respect to the
+    subgraph of unchosen nodes).
+
+    """
+    result = set()
+    remaining = set(G)
+    while remaining:
+        G = G.subgraph(remaining)
+        v = min(remaining, key=G.degree)
+        result.add(v)
+        remaining -= set(G[v]) | {v}
+    return result
+
+
+def strategy_independent_set(G, colors):
+    """Uses a greedy independent set removal strategy to determine the
+    colors.
+
+    This function updates ``colors`` **in-place** and return ``None``,
+    unlike the other strategy functions in this module.
+
+    This algorithm repeatedly finds and removes a maximal independent
+    set, assigning each node in the set an unused color.
+
+    ``G`` is a NetworkX graph.
+
+    This strategy is related to :func:`strategy_smallest_last`: in that
+    strategy, an independent set of size one is chosen at each step
+    instead of a maximal independent set.
+
+    """
+    remaining_nodes = set(G)
+    while len(remaining_nodes) > 0:
+        nodes = _maximal_independent_set(G.subgraph(remaining_nodes))
+        remaining_nodes -= nodes
+        yield from nodes
+
+
+def strategy_connected_sequential_bfs(G, colors):
+    """Returns an iterable over nodes in ``G`` in the order given by a
+    breadth-first traversal.
+
+    The generated sequence has the property that for each node except
+    the first, at least one neighbor appeared earlier in the sequence.
+
+    ``G`` is a NetworkX graph. ``colors`` is ignored.
+
+    """
+    return strategy_connected_sequential(G, colors, "bfs")
+
+
+def strategy_connected_sequential_dfs(G, colors):
+    """Returns an iterable over nodes in ``G`` in the order given by a
+    depth-first traversal.
+
+    The generated sequence has the property that for each node except
+    the first, at least one neighbor appeared earlier in the sequence.
+
+    ``G`` is a NetworkX graph. ``colors`` is ignored.
+
+    """
+    return strategy_connected_sequential(G, colors, "dfs")
+
+
+def strategy_connected_sequential(G, colors, traversal="bfs"):
+    """Returns an iterable over nodes in ``G`` in the order given by a
+    breadth-first or depth-first traversal.
+
+    ``traversal`` must be one of the strings ``'dfs'`` or ``'bfs'``,
+    representing depth-first traversal or breadth-first traversal,
+    respectively.
+
+    The generated sequence has the property that for each node except
+    the first, at least one neighbor appeared earlier in the sequence.
+
+    ``G`` is a NetworkX graph. ``colors`` is ignored.
+
+    """
+    if traversal == "bfs":
+        traverse = nx.bfs_edges
+    elif traversal == "dfs":
+        traverse = nx.dfs_edges
+    else:
+        raise nx.NetworkXError(
+            "Please specify one of the strings 'bfs' or"
+            " 'dfs' for connected sequential ordering"
+        )
+    for component in nx.connected_components(G):
+        source = arbitrary_element(component)
+        # Yield the source node, then all the nodes in the specified
+        # traversal order.
+        yield source
+        for _, end in traverse(G.subgraph(component), source):
+            yield end
+
+
+def strategy_saturation_largest_first(G, colors):
+    """Iterates over all the nodes of ``G`` in "saturation order" (also
+    known as "DSATUR").
+
+    ``G`` is a NetworkX graph. ``colors`` is a dictionary mapping nodes of
+    ``G`` to colors, for those nodes that have already been colored.
+
+    """
+    distinct_colors = {v: set() for v in G}
+
+    # Add the node color assignments given in colors to the
+    # distinct colors set for each neighbor of that node
+    for node, color in colors.items():
+        for neighbor in G[node]:
+            distinct_colors[neighbor].add(color)
+
+    # Check that the color assignments in colors are valid
+    # i.e. no neighboring nodes have the same color
+    if len(colors) >= 2:
+        for node, color in colors.items():
+            if color in distinct_colors[node]:
+                raise nx.NetworkXError("Neighboring nodes must have different colors")
+
+    # If 0 nodes have been colored, simply choose the node of highest degree.
+    if not colors:
+        node = max(G, key=G.degree)
+        yield node
+        # Add the color 0 to the distinct colors set for each
+        # neighbor of that node.
+        for v in G[node]:
+            distinct_colors[v].add(0)
+
+    while len(G) != len(colors):
+        # Update the distinct color sets for the neighbors.
+        for node, color in colors.items():
+            for neighbor in G[node]:
+                distinct_colors[neighbor].add(color)
+
+        # Compute the maximum saturation and the set of nodes that
+        # achieve that saturation.
+        saturation = {v: len(c) for v, c in distinct_colors.items() if v not in colors}
+        # Yield the node with the highest saturation, and break ties by
+        # degree.
+        node = max(saturation, key=lambda v: (saturation[v], G.degree(v)))
+        yield node
+
+
+#: Dictionary mapping name of a strategy as a string to the strategy function.
+STRATEGIES = {
+    "largest_first": strategy_largest_first,
+    "random_sequential": strategy_random_sequential,
+    "smallest_last": strategy_smallest_last,
+    "independent_set": strategy_independent_set,
+    "connected_sequential_bfs": strategy_connected_sequential_bfs,
+    "connected_sequential_dfs": strategy_connected_sequential_dfs,
+    "connected_sequential": strategy_connected_sequential,
+    "saturation_largest_first": strategy_saturation_largest_first,
+    "DSATUR": strategy_saturation_largest_first,
+}
+
+
+@nx._dispatchable
+def greedy_color(G, strategy="largest_first", interchange=False):
+    """Color a graph using various strategies of greedy graph coloring.
+
+    Attempts to color a graph using as few colors as possible, where no
+    neighbors of a node can have same color as the node itself. The
+    given strategy determines the order in which nodes are colored.
+
+    The strategies are described in [1]_, and smallest-last is based on
+    [2]_.
+
+    Parameters
+    ----------
+    G : NetworkX graph
+
+    strategy : string or function(G, colors)
+       A function (or a string representing a function) that provides
+       the coloring strategy, by returning nodes in the ordering they
+       should be colored. ``G`` is the graph, and ``colors`` is a
+       dictionary of the currently assigned colors, keyed by nodes. The
+       function must return an iterable over all the nodes in ``G``.
+
+       If the strategy function is an iterator generator (that is, a
+       function with ``yield`` statements), keep in mind that the
+       ``colors`` dictionary will be updated after each ``yield``, since
+       this function chooses colors greedily.
+
+       If ``strategy`` is a string, it must be one of the following,
+       each of which represents one of the built-in strategy functions.
+
+       * ``'largest_first'``
+       * ``'random_sequential'``
+       * ``'smallest_last'``
+       * ``'independent_set'``
+       * ``'connected_sequential_bfs'``
+       * ``'connected_sequential_dfs'``
+       * ``'connected_sequential'`` (alias for the previous strategy)
+       * ``'saturation_largest_first'``
+       * ``'DSATUR'`` (alias for the previous strategy)
+
+    interchange: bool
+       Will use the color interchange algorithm described by [3]_ if set
+       to ``True``.
+
+       Note that ``saturation_largest_first`` and ``independent_set``
+       do not work with interchange. Furthermore, if you use
+       interchange with your own strategy function, you cannot rely
+       on the values in the ``colors`` argument.
+
+    Returns
+    -------
+    A dictionary with keys representing nodes and values representing
+    corresponding coloring.
+
+    Examples
+    --------
+    >>> G = nx.cycle_graph(4)
+    >>> d = nx.coloring.greedy_color(G, strategy="largest_first")
+    >>> d in [{0: 0, 1: 1, 2: 0, 3: 1}, {0: 1, 1: 0, 2: 1, 3: 0}]
+    True
+
+    Raises
+    ------
+    NetworkXPointlessConcept
+        If ``strategy`` is ``saturation_largest_first`` or
+        ``independent_set`` and ``interchange`` is ``True``.
+
+    References
+    ----------
+    .. [1] Adrian Kosowski, and Krzysztof Manuszewski,
+       Classical Coloring of Graphs, Graph Colorings, 2-19, 2004.
+       ISBN 0-8218-3458-4.
+    .. [2] David W. Matula, and Leland L. Beck, "Smallest-last
+       ordering and clustering and graph coloring algorithms." *J. ACM* 30,
+       3 (July 1983), 417–427. <https://doi.org/10.1145/2402.322385>
+    .. [3] Maciej M. Sysło, Narsingh Deo, Janusz S. Kowalik,
+       Discrete Optimization Algorithms with Pascal Programs, 415-424, 1983.
+       ISBN 0-486-45353-7.
+
+    """
+    if len(G) == 0:
+        return {}
+    # Determine the strategy provided by the caller.
+    strategy = STRATEGIES.get(strategy, strategy)
+    if not callable(strategy):
+        raise nx.NetworkXError(
+            f"strategy must be callable or a valid string. {strategy} not valid."
+        )
+    # Perform some validation on the arguments before executing any
+    # strategy functions.
+    if interchange:
+        if strategy is strategy_independent_set:
+            msg = "interchange cannot be used with independent_set"
+            raise nx.NetworkXPointlessConcept(msg)
+        if strategy is strategy_saturation_largest_first:
+            msg = "interchange cannot be used with" " saturation_largest_first"
+            raise nx.NetworkXPointlessConcept(msg)
+    colors = {}
+    nodes = strategy(G, colors)
+    if interchange:
+        return _greedy_coloring_with_interchange(G, nodes)
+    for u in nodes:
+        # Set to keep track of colors of neighbors
+        nbr_colors = {colors[v] for v in G[u] if v in colors}
+        # Find the first unused color.
+        for color in itertools.count():
+            if color not in nbr_colors:
+                break
+        # Assign the new color to the current node.
+        colors[u] = color
+    return colors
+
+
+# Tools for coloring with interchanges
+class _Node:
+    __slots__ = ["node_id", "color", "adj_list", "adj_color"]
+
+    def __init__(self, node_id, n):
+        self.node_id = node_id
+        self.color = -1
+        self.adj_list = None
+        self.adj_color = [None for _ in range(n)]
+
+    def __repr__(self):
+        return (
+            f"Node_id: {self.node_id}, Color: {self.color}, "
+            f"Adj_list: ({self.adj_list}), adj_color: ({self.adj_color})"
+        )
+
+    def assign_color(self, adj_entry, color):
+        adj_entry.col_prev = None
+        adj_entry.col_next = self.adj_color[color]
+        self.adj_color[color] = adj_entry
+        if adj_entry.col_next is not None:
+            adj_entry.col_next.col_prev = adj_entry
+
+    def clear_color(self, adj_entry, color):
+        if adj_entry.col_prev is None:
+            self.adj_color[color] = adj_entry.col_next
+        else:
+            adj_entry.col_prev.col_next = adj_entry.col_next
+        if adj_entry.col_next is not None:
+            adj_entry.col_next.col_prev = adj_entry.col_prev
+
+    def iter_neighbors(self):
+        adj_node = self.adj_list
+        while adj_node is not None:
+            yield adj_node
+            adj_node = adj_node.next
+
+    def iter_neighbors_color(self, color):
+        adj_color_node = self.adj_color[color]
+        while adj_color_node is not None:
+            yield adj_color_node.node_id
+            adj_color_node = adj_color_node.col_next
+
+
+class _AdjEntry:
+    __slots__ = ["node_id", "next", "mate", "col_next", "col_prev"]
+
+    def __init__(self, node_id):
+        self.node_id = node_id
+        self.next = None
+        self.mate = None
+        self.col_next = None
+        self.col_prev = None
+
+    def __repr__(self):
+        col_next = None if self.col_next is None else self.col_next.node_id
+        col_prev = None if self.col_prev is None else self.col_prev.node_id
+        return (
+            f"Node_id: {self.node_id}, Next: ({self.next}), "
+            f"Mate: ({self.mate.node_id}), "
+            f"col_next: ({col_next}), col_prev: ({col_prev})"
+        )
+
+
+def _greedy_coloring_with_interchange(G, nodes):
+    """Return a coloring for `original_graph` using interchange approach
+
+    This procedure is an adaption of the algorithm described by [1]_,
+    and is an implementation of coloring with interchange. Please be
+    advised, that the datastructures used are rather complex because
+    they are optimized to minimize the time spent identifying
+    subcomponents of the graph, which are possible candidates for color
+    interchange.
+
+    Parameters
+    ----------
+    G : NetworkX graph
+        The graph to be colored
+
+    nodes : list
+        nodes ordered using the strategy of choice
+
+    Returns
+    -------
+    dict :
+        A dictionary keyed by node to a color value
+
+    References
+    ----------
+    .. [1] Maciej M. Syslo, Narsingh Deo, Janusz S. Kowalik,
+       Discrete Optimization Algorithms with Pascal Programs, 415-424, 1983.
+       ISBN 0-486-45353-7.
+    """
+    n = len(G)
+
+    graph = {node: _Node(node, n) for node in G}
+
+    for node1, node2 in G.edges():
+        adj_entry1 = _AdjEntry(node2)
+        adj_entry2 = _AdjEntry(node1)
+        adj_entry1.mate = adj_entry2
+        adj_entry2.mate = adj_entry1
+        node1_head = graph[node1].adj_list
+        adj_entry1.next = node1_head
+        graph[node1].adj_list = adj_entry1
+        node2_head = graph[node2].adj_list
+        adj_entry2.next = node2_head
+        graph[node2].adj_list = adj_entry2
+
+    k = 0
+    for node in nodes:
+        # Find the smallest possible, unused color
+        neighbors = graph[node].iter_neighbors()
+        col_used = {graph[adj_node.node_id].color for adj_node in neighbors}
+        col_used.discard(-1)
+        k1 = next(itertools.dropwhile(lambda x: x in col_used, itertools.count()))
+
+        # k1 is now the lowest available color
+        if k1 > k:
+            connected = True
+            visited = set()
+            col1 = -1
+            col2 = -1
+            while connected and col1 < k:
+                col1 += 1
+                neighbor_cols = graph[node].iter_neighbors_color(col1)
+                col1_adj = list(neighbor_cols)
+
+                col2 = col1
+                while connected and col2 < k:
+                    col2 += 1
+                    visited = set(col1_adj)
+                    frontier = list(col1_adj)
+                    i = 0
+                    while i < len(frontier):
+                        search_node = frontier[i]
+                        i += 1
+                        col_opp = col2 if graph[search_node].color == col1 else col1
+                        neighbor_cols = graph[search_node].iter_neighbors_color(col_opp)
+
+                        for neighbor in neighbor_cols:
+                            if neighbor not in visited:
+                                visited.add(neighbor)
+                                frontier.append(neighbor)
+
+                    # Search if node is not adj to any col2 vertex
+                    connected = (
+                        len(
+                            visited.intersection(graph[node].iter_neighbors_color(col2))
+                        )
+                        > 0
+                    )
+
+            # If connected is false then we can swap !!!
+            if not connected:
+                # Update all the nodes in the component
+                for search_node in visited:
+                    graph[search_node].color = (
+                        col2 if graph[search_node].color == col1 else col1
+                    )
+                    col2_adj = graph[search_node].adj_color[col2]
+                    graph[search_node].adj_color[col2] = graph[search_node].adj_color[
+                        col1
+                    ]
+                    graph[search_node].adj_color[col1] = col2_adj
+
+                # Update all the neighboring nodes
+                for search_node in visited:
+                    col = graph[search_node].color
+                    col_opp = col1 if col == col2 else col2
+                    for adj_node in graph[search_node].iter_neighbors():
+                        if graph[adj_node.node_id].color != col_opp:
+                            # Direct reference to entry
+                            adj_mate = adj_node.mate
+                            graph[adj_node.node_id].clear_color(adj_mate, col_opp)
+                            graph[adj_node.node_id].assign_color(adj_mate, col)
+                k1 = col1
+
+        # We can color this node color k1
+        graph[node].color = k1
+        k = max(k1, k)
+
+        # Update the neighbors of this node
+        for adj_node in graph[node].iter_neighbors():
+            adj_mate = adj_node.mate
+            graph[adj_node.node_id].assign_color(adj_mate, k1)
+
+    return {node.node_id: node.color for node in graph.values()}

wemm/lib/python3.10/site-packages/networkx/algorithms/components/tests/test_biconnected.py

@@ -0,0 +1,248 @@
+import pytest
+
+import networkx as nx
+from networkx import NetworkXNotImplemented
+
+
+def assert_components_edges_equal(x, y):
+    sx = {frozenset(frozenset(e) for e in c) for c in x}
+    sy = {frozenset(frozenset(e) for e in c) for c in y}
+    assert sx == sy
+
+
+def assert_components_equal(x, y):
+    sx = {frozenset(c) for c in x}
+    sy = {frozenset(c) for c in y}
+    assert sx == sy
+
+
+def test_barbell():
+    G = nx.barbell_graph(8, 4)
+    nx.add_path(G, [7, 20, 21, 22])
+    nx.add_cycle(G, [22, 23, 24, 25])
+    pts = set(nx.articulation_points(G))
+    assert pts == {7, 8, 9, 10, 11, 12, 20, 21, 22}
+
+    answer = [
+        {12, 13, 14, 15, 16, 17, 18, 19},
+        {0, 1, 2, 3, 4, 5, 6, 7},
+        {22, 23, 24, 25},
+        {11, 12},
+        {10, 11},
+        {9, 10},
+        {8, 9},
+        {7, 8},
+        {21, 22},
+        {20, 21},
+        {7, 20},
+    ]
+    assert_components_equal(list(nx.biconnected_components(G)), answer)
+
+    G.add_edge(2, 17)
+    pts = set(nx.articulation_points(G))
+    assert pts == {7, 20, 21, 22}
+
+
+def test_articulation_points_repetitions():
+    G = nx.Graph()
+    G.add_edges_from([(0, 1), (1, 2), (1, 3)])
+    assert list(nx.articulation_points(G)) == [1]
+
+
+def test_articulation_points_cycle():
+    G = nx.cycle_graph(3)
+    nx.add_cycle(G, [1, 3, 4])
+    pts = set(nx.articulation_points(G))
+    assert pts == {1}
+
+
+def test_is_biconnected():
+    G = nx.cycle_graph(3)
+    assert nx.is_biconnected(G)
+    nx.add_cycle(G, [1, 3, 4])
+    assert not nx.is_biconnected(G)
+
+
+def test_empty_is_biconnected():
+    G = nx.empty_graph(5)
+    assert not nx.is_biconnected(G)
+    G.add_edge(0, 1)
+    assert not nx.is_biconnected(G)
+
+
+def test_biconnected_components_cycle():
+    G = nx.cycle_graph(3)
+    nx.add_cycle(G, [1, 3, 4])
+    answer = [{0, 1, 2}, {1, 3, 4}]
+    assert_components_equal(list(nx.biconnected_components(G)), answer)
+
+
+def test_biconnected_components1():
+    # graph example from
+    # https://web.archive.org/web/20121229123447/http://www.ibluemojo.com/school/articul_algorithm.html
+    edges = [
+        (0, 1),
+        (0, 5),
+        (0, 6),
+        (0, 14),
+        (1, 5),
+        (1, 6),
+        (1, 14),
+        (2, 4),
+        (2, 10),
+        (3, 4),
+        (3, 15),
+        (4, 6),
+        (4, 7),
+        (4, 10),
+        (5, 14),
+        (6, 14),
+        (7, 9),
+        (8, 9),
+        (8, 12),
+        (8, 13),
+        (10, 15),
+        (11, 12),
+        (11, 13),
+        (12, 13),
+    ]
+    G = nx.Graph(edges)
+    pts = set(nx.articulation_points(G))
+    assert pts == {4, 6, 7, 8, 9}
+    comps = list(nx.biconnected_component_edges(G))
+    answer = [
+        [(3, 4), (15, 3), (10, 15), (10, 4), (2, 10), (4, 2)],
+        [(13, 12), (13, 8), (11, 13), (12, 11), (8, 12)],
+        [(9, 8)],
+        [(7, 9)],
+        [(4, 7)],
+        [(6, 4)],
+        [(14, 0), (5, 1), (5, 0), (14, 5), (14, 1), (6, 14), (6, 0), (1, 6), (0, 1)],
+    ]
+    assert_components_edges_equal(comps, answer)
+
+
+def test_biconnected_components2():
+    G = nx.Graph()
+    nx.add_cycle(G, "ABC")
+    nx.add_cycle(G, "CDE")
+    nx.add_cycle(G, "FIJHG")
+    nx.add_cycle(G, "GIJ")
+    G.add_edge("E", "G")
+    comps = list(nx.biconnected_component_edges(G))
+    answer = [
+        [
+            tuple("GF"),
+            tuple("FI"),
+            tuple("IG"),
+            tuple("IJ"),
+            tuple("JG"),
+            tuple("JH"),
+            tuple("HG"),
+        ],
+        [tuple("EG")],
+        [tuple("CD"), tuple("DE"), tuple("CE")],
+        [tuple("AB"), tuple("BC"), tuple("AC")],
+    ]
+    assert_components_edges_equal(comps, answer)
+
+
+def test_biconnected_davis():
+    D = nx.davis_southern_women_graph()
+    bcc = list(nx.biconnected_components(D))[0]
+    assert set(D) == bcc  # All nodes in a giant bicomponent
+    # So no articulation points
+    assert len(list(nx.articulation_points(D))) == 0
+
+
+def test_biconnected_karate():
+    K = nx.karate_club_graph()
+    answer = [
+        {
+            0,
+            1,
+            2,
+            3,
+            7,
+            8,
+            9,
+            12,
+            13,
+            14,
+            15,
+            17,
+            18,
+            19,
+            20,
+            21,
+            22,
+            23,
+            24,
+            25,
+            26,
+            27,
+            28,
+            29,
+            30,
+            31,
+            32,
+            33,
+        },
+        {0, 4, 5, 6, 10, 16},
+        {0, 11},
+    ]
+    bcc = list(nx.biconnected_components(K))
+    assert_components_equal(bcc, answer)
+    assert set(nx.articulation_points(K)) == {0}
+
+
+def test_biconnected_eppstein():
+    # tests from http://www.ics.uci.edu/~eppstein/PADS/Biconnectivity.py
+    G1 = nx.Graph(
+        {
+            0: [1, 2, 5],
+            1: [0, 5],
+            2: [0, 3, 4],
+            3: [2, 4, 5, 6],
+            4: [2, 3, 5, 6],
+            5: [0, 1, 3, 4],
+            6: [3, 4],
+        }
+    )
+    G2 = nx.Graph(
+        {
+            0: [2, 5],
+            1: [3, 8],
+            2: [0, 3, 5],
+            3: [1, 2, 6, 8],
+            4: [7],
+            5: [0, 2],
+            6: [3, 8],
+            7: [4],
+            8: [1, 3, 6],
+        }
+    )
+    assert nx.is_biconnected(G1)
+    assert not nx.is_biconnected(G2)
+    answer_G2 = [{1, 3, 6, 8}, {0, 2, 5}, {2, 3}, {4, 7}]
+    bcc = list(nx.biconnected_components(G2))
+    assert_components_equal(bcc, answer_G2)
+
+
+def test_null_graph():
+    G = nx.Graph()
+    assert not nx.is_biconnected(G)
+    assert list(nx.biconnected_components(G)) == []
+    assert list(nx.biconnected_component_edges(G)) == []
+    assert list(nx.articulation_points(G)) == []
+
+
+def test_connected_raise():
+    DG = nx.DiGraph()
+    with pytest.raises(NetworkXNotImplemented):
+        next(nx.biconnected_components(DG))
+    with pytest.raises(NetworkXNotImplemented):
+        next(nx.biconnected_component_edges(DG))
+    with pytest.raises(NetworkXNotImplemented):
+        next(nx.articulation_points(DG))
+    pytest.raises(NetworkXNotImplemented, nx.is_biconnected, DG)

wemm/lib/python3.10/site-packages/networkx/algorithms/components/tests/test_connected.py

@@ -0,0 +1,138 @@
+import pytest
+
+import networkx as nx
+from networkx import NetworkXNotImplemented
+from networkx import convert_node_labels_to_integers as cnlti
+from networkx.classes.tests import dispatch_interface
+
+
+class TestConnected:
+    @classmethod
+    def setup_class(cls):
+        G1 = cnlti(nx.grid_2d_graph(2, 2), first_label=0, ordering="sorted")
+        G2 = cnlti(nx.lollipop_graph(3, 3), first_label=4, ordering="sorted")
+        G3 = cnlti(nx.house_graph(), first_label=10, ordering="sorted")
+        cls.G = nx.union(G1, G2)
+        cls.G = nx.union(cls.G, G3)
+        cls.DG = nx.DiGraph([(1, 2), (1, 3), (2, 3)])
+        cls.grid = cnlti(nx.grid_2d_graph(4, 4), first_label=1)
+
+        cls.gc = []
+        G = nx.DiGraph()
+        G.add_edges_from(
+            [
+                (1, 2),
+                (2, 3),
+                (2, 8),
+                (3, 4),
+                (3, 7),
+                (4, 5),
+                (5, 3),
+                (5, 6),
+                (7, 4),
+                (7, 6),
+                (8, 1),
+                (8, 7),
+            ]
+        )
+        C = [[3, 4, 5, 7], [1, 2, 8], [6]]
+        cls.gc.append((G, C))
+
+        G = nx.DiGraph()
+        G.add_edges_from([(1, 2), (1, 3), (1, 4), (4, 2), (3, 4), (2, 3)])
+        C = [[2, 3, 4], [1]]
+        cls.gc.append((G, C))
+
+        G = nx.DiGraph()
+        G.add_edges_from([(1, 2), (2, 3), (3, 2), (2, 1)])
+        C = [[1, 2, 3]]
+        cls.gc.append((G, C))
+
+        # Eppstein's tests
+        G = nx.DiGraph({0: [1], 1: [2, 3], 2: [4, 5], 3: [4, 5], 4: [6], 5: [], 6: []})
+        C = [[0], [1], [2], [3], [4], [5], [6]]
+        cls.gc.append((G, C))
+
+        G = nx.DiGraph({0: [1], 1: [2, 3, 4], 2: [0, 3], 3: [4], 4: [3]})
+        C = [[0, 1, 2], [3, 4]]
+        cls.gc.append((G, C))
+
+        G = nx.DiGraph()
+        C = []
+        cls.gc.append((G, C))
+
+    def test_connected_components(self):
+        # Test duplicated below
+        cc = nx.connected_components
+        G = self.G
+        C = {
+            frozenset([0, 1, 2, 3]),
+            frozenset([4, 5, 6, 7, 8, 9]),
+            frozenset([10, 11, 12, 13, 14]),
+        }
+        assert {frozenset(g) for g in cc(G)} == C
+
+    def test_connected_components_nx_loopback(self):
+        # This tests the @nx._dispatchable mechanism, treating nx.connected_components
+        # as if it were a re-implementation from another package.
+        # Test duplicated from above
+        cc = nx.connected_components
+        G = dispatch_interface.convert(self.G)
+        C = {
+            frozenset([0, 1, 2, 3]),
+            frozenset([4, 5, 6, 7, 8, 9]),
+            frozenset([10, 11, 12, 13, 14]),
+        }
+        if "nx_loopback" in nx.config.backends or not nx.config.backends:
+            # If `nx.config.backends` is empty, then `_dispatchable.__call__` takes a
+            # "fast path" and does not check graph inputs, so using an unknown backend
+            # here will still work.
+            assert {frozenset(g) for g in cc(G)} == C
+        else:
+            # This raises, because "nx_loopback" is not registered as a backend.
+            with pytest.raises(
+                ImportError, match="'nx_loopback' backend is not installed"
+            ):
+                cc(G)
+
+    def test_number_connected_components(self):
+        ncc = nx.number_connected_components
+        assert ncc(self.G) == 3
+
+    def test_number_connected_components2(self):
+        ncc = nx.number_connected_components
+        assert ncc(self.grid) == 1
+
+    def test_connected_components2(self):
+        cc = nx.connected_components
+        G = self.grid
+        C = {frozenset([1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16])}
+        assert {frozenset(g) for g in cc(G)} == C
+
+    def test_node_connected_components(self):
+        ncc = nx.node_connected_component
+        G = self.grid
+        C = {1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16}
+        assert ncc(G, 1) == C
+
+    def test_is_connected(self):
+        assert nx.is_connected(self.grid)
+        G = nx.Graph()
+        G.add_nodes_from([1, 2])
+        assert not nx.is_connected(G)
+
+    def test_connected_raise(self):
+        with pytest.raises(NetworkXNotImplemented):
+            next(nx.connected_components(self.DG))
+        pytest.raises(NetworkXNotImplemented, nx.number_connected_components, self.DG)
+        pytest.raises(NetworkXNotImplemented, nx.node_connected_component, self.DG, 1)
+        pytest.raises(NetworkXNotImplemented, nx.is_connected, self.DG)
+        pytest.raises(nx.NetworkXPointlessConcept, nx.is_connected, nx.Graph())
+
+    def test_connected_mutability(self):
+        G = self.grid
+        seen = set()
+        for component in nx.connected_components(G):
+            assert len(seen & component) == 0
+            seen.update(component)
+            component.clear()

wemm/lib/python3.10/site-packages/networkx/algorithms/components/tests/test_weakly_connected.py

@@ -0,0 +1,96 @@
+import pytest
+
+import networkx as nx
+from networkx import NetworkXNotImplemented
+
+
+class TestWeaklyConnected:
+    @classmethod
+    def setup_class(cls):
+        cls.gc = []
+        G = nx.DiGraph()
+        G.add_edges_from(
+            [
+                (1, 2),
+                (2, 3),
+                (2, 8),
+                (3, 4),
+                (3, 7),
+                (4, 5),
+                (5, 3),
+                (5, 6),
+                (7, 4),
+                (7, 6),
+                (8, 1),
+                (8, 7),
+            ]
+        )
+        C = [[3, 4, 5, 7], [1, 2, 8], [6]]
+        cls.gc.append((G, C))
+
+        G = nx.DiGraph()
+        G.add_edges_from([(1, 2), (1, 3), (1, 4), (4, 2), (3, 4), (2, 3)])
+        C = [[2, 3, 4], [1]]
+        cls.gc.append((G, C))
+
+        G = nx.DiGraph()
+        G.add_edges_from([(1, 2), (2, 3), (3, 2), (2, 1)])
+        C = [[1, 2, 3]]
+        cls.gc.append((G, C))
+
+        # Eppstein's tests
+        G = nx.DiGraph({0: [1], 1: [2, 3], 2: [4, 5], 3: [4, 5], 4: [6], 5: [], 6: []})
+        C = [[0], [1], [2], [3], [4], [5], [6]]
+        cls.gc.append((G, C))
+
+        G = nx.DiGraph({0: [1], 1: [2, 3, 4], 2: [0, 3], 3: [4], 4: [3]})
+        C = [[0, 1, 2], [3, 4]]
+        cls.gc.append((G, C))
+
+    def test_weakly_connected_components(self):
+        for G, C in self.gc:
+            U = G.to_undirected()
+            w = {frozenset(g) for g in nx.weakly_connected_components(G)}
+            c = {frozenset(g) for g in nx.connected_components(U)}
+            assert w == c
+
+    def test_number_weakly_connected_components(self):
+        for G, C in self.gc:
+            U = G.to_undirected()
+            w = nx.number_weakly_connected_components(G)
+            c = nx.number_connected_components(U)
+            assert w == c
+
+    def test_is_weakly_connected(self):
+        for G, C in self.gc:
+            U = G.to_undirected()
+            assert nx.is_weakly_connected(G) == nx.is_connected(U)
+
+    def test_null_graph(self):
+        G = nx.DiGraph()
+        assert list(nx.weakly_connected_components(G)) == []
+        assert nx.number_weakly_connected_components(G) == 0
+        with pytest.raises(nx.NetworkXPointlessConcept):
+            next(nx.is_weakly_connected(G))
+
+    def test_connected_raise(self):
+        G = nx.Graph()
+        with pytest.raises(NetworkXNotImplemented):
+            next(nx.weakly_connected_components(G))
+        pytest.raises(NetworkXNotImplemented, nx.number_weakly_connected_components, G)
+        pytest.raises(NetworkXNotImplemented, nx.is_weakly_connected, G)
+
+    def test_connected_mutability(self):
+        DG = nx.path_graph(5, create_using=nx.DiGraph)
+        G = nx.disjoint_union(DG, DG)
+        seen = set()
+        for component in nx.weakly_connected_components(G):
+            assert len(seen & component) == 0
+            seen.update(component)
+            component.clear()
+
+
+def test_is_weakly_connected_empty_graph_raises():
+    G = nx.DiGraph()
+    with pytest.raises(nx.NetworkXPointlessConcept, match="Connectivity is undefined"):
+        nx.is_weakly_connected(G)

wemm/lib/python3.10/site-packages/networkx/algorithms/operators/__init__.py

@@ -0,0 +1,4 @@
+from networkx.algorithms.operators.all import *
+from networkx.algorithms.operators.binary import *
+from networkx.algorithms.operators.product import *
+from networkx.algorithms.operators.unary import *

wemm/lib/python3.10/site-packages/networkx/algorithms/operators/all.py

@@ -0,0 +1,321 @@
+"""Operations on many graphs."""
+
+from itertools import chain, repeat
+
+import networkx as nx
+
+__all__ = ["union_all", "compose_all", "disjoint_union_all", "intersection_all"]
+
+
+@nx._dispatchable(graphs="[graphs]", preserve_all_attrs=True, returns_graph=True)
+def union_all(graphs, rename=()):
+    """Returns the union of all graphs.
+
+    The graphs must be disjoint, otherwise an exception is raised.
+
+    Parameters
+    ----------
+    graphs : iterable
+       Iterable of NetworkX graphs
+
+    rename : iterable , optional
+       Node names of graphs can be changed by specifying the tuple
+       rename=('G-','H-') (for example).  Node "u" in G is then renamed
+       "G-u" and "v" in H is renamed "H-v". Infinite generators (like itertools.count)
+       are also supported.
+
+    Returns
+    -------
+    U : a graph with the same type as the first graph in list
+
+    Raises
+    ------
+    ValueError
+       If `graphs` is an empty list.
+
+    NetworkXError
+        In case of mixed type graphs, like MultiGraph and Graph, or directed and undirected graphs.
+
+    Notes
+    -----
+    For operating on mixed type graphs, they should be converted to the same type.
+    >>> G = nx.Graph()
+    >>> H = nx.DiGraph()
+    >>> GH = union_all([nx.DiGraph(G), H])
+
+    To force a disjoint union with node relabeling, use
+    disjoint_union_all(G,H) or convert_node_labels_to integers().
+
+    Graph, edge, and node attributes are propagated to the union graph.
+    If a graph attribute is present in multiple graphs, then the value
+    from the last graph in the list with that attribute is used.
+
+    Examples
+    --------
+    >>> G1 = nx.Graph([(1, 2), (2, 3)])
+    >>> G2 = nx.Graph([(4, 5), (5, 6)])
+    >>> result_graph = nx.union_all([G1, G2])
+    >>> result_graph.nodes()
+    NodeView((1, 2, 3, 4, 5, 6))
+    >>> result_graph.edges()
+    EdgeView([(1, 2), (2, 3), (4, 5), (5, 6)])
+
+    See Also
+    --------
+    union
+    disjoint_union_all
+    """
+    R = None
+    seen_nodes = set()
+
+    # rename graph to obtain disjoint node labels
+    def add_prefix(graph, prefix):
+        if prefix is None:
+            return graph
+
+        def label(x):
+            return f"{prefix}{x}"
+
+        return nx.relabel_nodes(graph, label)
+
+    rename = chain(rename, repeat(None))
+    graphs = (add_prefix(G, name) for G, name in zip(graphs, rename))
+
+    for i, G in enumerate(graphs):
+        G_nodes_set = set(G.nodes)
+        if i == 0:
+            # Union is the same type as first graph
+            R = G.__class__()
+        elif G.is_directed() != R.is_directed():
+            raise nx.NetworkXError("All graphs must be directed or undirected.")
+        elif G.is_multigraph() != R.is_multigraph():
+            raise nx.NetworkXError("All graphs must be graphs or multigraphs.")
+        elif not seen_nodes.isdisjoint(G_nodes_set):
+            raise nx.NetworkXError(
+                "The node sets of the graphs are not disjoint.\n"
+                "Use `rename` to specify prefixes for the graphs or use\n"
+                "disjoint_union(G1, G2, ..., GN)."
+            )
+
+        seen_nodes |= G_nodes_set
+        R.graph.update(G.graph)
+        R.add_nodes_from(G.nodes(data=True))
+        R.add_edges_from(
+            G.edges(keys=True, data=True) if G.is_multigraph() else G.edges(data=True)
+        )
+
+    if R is None:
+        raise ValueError("cannot apply union_all to an empty list")
+
+    return R
+
+
+@nx._dispatchable(graphs="[graphs]", preserve_all_attrs=True, returns_graph=True)
+def disjoint_union_all(graphs):
+    """Returns the disjoint union of all graphs.
+
+    This operation forces distinct integer node labels starting with 0
+    for the first graph in the list and numbering consecutively.
+
+    Parameters
+    ----------
+    graphs : iterable
+       Iterable of NetworkX graphs
+
+    Returns
+    -------
+    U : A graph with the same type as the first graph in list
+
+    Raises
+    ------
+    ValueError
+       If `graphs` is an empty list.
+
+    NetworkXError
+        In case of mixed type graphs, like MultiGraph and Graph, or directed and undirected graphs.
+
+    Examples
+    --------
+    >>> G1 = nx.Graph([(1, 2), (2, 3)])
+    >>> G2 = nx.Graph([(4, 5), (5, 6)])
+    >>> U = nx.disjoint_union_all([G1, G2])
+    >>> list(U.nodes())
+    [0, 1, 2, 3, 4, 5]
+    >>> list(U.edges())
+    [(0, 1), (1, 2), (3, 4), (4, 5)]
+
+    Notes
+    -----
+    For operating on mixed type graphs, they should be converted to the same type.
+
+    Graph, edge, and node attributes are propagated to the union graph.
+    If a graph attribute is present in multiple graphs, then the value
+    from the last graph in the list with that attribute is used.
+    """
+
+    def yield_relabeled(graphs):
+        first_label = 0
+        for G in graphs:
+            yield nx.convert_node_labels_to_integers(G, first_label=first_label)
+            first_label += len(G)
+
+    R = union_all(yield_relabeled(graphs))
+
+    return R
+
+
+@nx._dispatchable(graphs="[graphs]", preserve_all_attrs=True, returns_graph=True)
+def compose_all(graphs):
+    """Returns the composition of all graphs.
+
+    Composition is the simple union of the node sets and edge sets.
+    The node sets of the supplied graphs need not be disjoint.
+
+    Parameters
+    ----------
+    graphs : iterable
+       Iterable of NetworkX graphs
+
+    Returns
+    -------
+    C : A graph with the same type as the first graph in list
+
+    Raises
+    ------
+    ValueError
+       If `graphs` is an empty list.
+
+    NetworkXError
+        In case of mixed type graphs, like MultiGraph and Graph, or directed and undirected graphs.
+
+    Examples
+    --------
+    >>> G1 = nx.Graph([(1, 2), (2, 3)])
+    >>> G2 = nx.Graph([(3, 4), (5, 6)])
+    >>> C = nx.compose_all([G1, G2])
+    >>> list(C.nodes())
+    [1, 2, 3, 4, 5, 6]
+    >>> list(C.edges())
+    [(1, 2), (2, 3), (3, 4), (5, 6)]
+
+    Notes
+    -----
+    For operating on mixed type graphs, they should be converted to the same type.
+
+    Graph, edge, and node attributes are propagated to the union graph.
+    If a graph attribute is present in multiple graphs, then the value
+    from the last graph in the list with that attribute is used.
+    """
+    R = None
+
+    # add graph attributes, H attributes take precedent over G attributes
+    for i, G in enumerate(graphs):
+        if i == 0:
+            # create new graph
+            R = G.__class__()
+        elif G.is_directed() != R.is_directed():
+            raise nx.NetworkXError("All graphs must be directed or undirected.")
+        elif G.is_multigraph() != R.is_multigraph():
+            raise nx.NetworkXError("All graphs must be graphs or multigraphs.")
+
+        R.graph.update(G.graph)
+        R.add_nodes_from(G.nodes(data=True))
+        R.add_edges_from(
+            G.edges(keys=True, data=True) if G.is_multigraph() else G.edges(data=True)
+        )
+
+    if R is None:
+        raise ValueError("cannot apply compose_all to an empty list")
+
+    return R
+
+
+@nx._dispatchable(graphs="[graphs]", returns_graph=True)
+def intersection_all(graphs):
+    """Returns a new graph that contains only the nodes and the edges that exist in
+    all graphs.
+
+    Parameters
+    ----------
+    graphs : iterable
+       Iterable of NetworkX graphs
+
+    Returns
+    -------
+    R : A new graph with the same type as the first graph in list
+
+    Raises
+    ------
+    ValueError
+       If `graphs` is an empty list.
+
+    NetworkXError
+        In case of mixed type graphs, like MultiGraph and Graph, or directed and undirected graphs.
+
+    Notes
+    -----
+    For operating on mixed type graphs, they should be converted to the same type.
+
+    Attributes from the graph, nodes, and edges are not copied to the new
+    graph.
+
+    The resulting graph can be updated with attributes if desired. For example, code which adds the minimum attribute for each node across all graphs could work.
+    >>> g = nx.Graph()
+    >>> g.add_node(0, capacity=4)
+    >>> g.add_node(1, capacity=3)
+    >>> g.add_edge(0, 1)
+
+    >>> h = g.copy()
+    >>> h.nodes[0]["capacity"] = 2
+
+    >>> gh = nx.intersection_all([g, h])
+
+    >>> new_node_attr = {
+    ...     n: min(*(anyG.nodes[n].get("capacity", float("inf")) for anyG in [g, h]))
+    ...     for n in gh
+    ... }
+    >>> nx.set_node_attributes(gh, new_node_attr, "new_capacity")
+    >>> gh.nodes(data=True)
+    NodeDataView({0: {'new_capacity': 2}, 1: {'new_capacity': 3}})
+
+    Examples
+    --------
+    >>> G1 = nx.Graph([(1, 2), (2, 3)])
+    >>> G2 = nx.Graph([(2, 3), (3, 4)])
+    >>> R = nx.intersection_all([G1, G2])
+    >>> list(R.nodes())
+    [2, 3]
+    >>> list(R.edges())
+    [(2, 3)]
+
+    """
+    R = None
+
+    for i, G in enumerate(graphs):
+        G_nodes_set = set(G.nodes)
+        G_edges_set = set(G.edges)
+        if not G.is_directed():
+            if G.is_multigraph():
+                G_edges_set.update((v, u, k) for u, v, k in list(G_edges_set))
+            else:
+                G_edges_set.update((v, u) for u, v in list(G_edges_set))
+        if i == 0:
+            # create new graph
+            R = G.__class__()
+            node_intersection = G_nodes_set
+            edge_intersection = G_edges_set
+        elif G.is_directed() != R.is_directed():
+            raise nx.NetworkXError("All graphs must be directed or undirected.")
+        elif G.is_multigraph() != R.is_multigraph():
+            raise nx.NetworkXError("All graphs must be graphs or multigraphs.")
+        else:
+            node_intersection &= G_nodes_set
+            edge_intersection &= G_edges_set
+
+    if R is None:
+        raise ValueError("cannot apply intersection_all to an empty list")
+
+    R.add_nodes_from(node_intersection)
+    R.add_edges_from(edge_intersection)
+
+    return R

wemm/lib/python3.10/site-packages/networkx/algorithms/operators/binary.py

@@ -0,0 +1,450 @@
+"""
+Operations on graphs including union, intersection, difference.
+"""
+
+import networkx as nx
+
+__all__ = [
+    "union",
+    "compose",
+    "disjoint_union",
+    "intersection",
+    "difference",
+    "symmetric_difference",
+    "full_join",
+]
+_G_H = {"G": 0, "H": 1}
+
+
+@nx._dispatchable(graphs=_G_H, preserve_all_attrs=True, returns_graph=True)
+def union(G, H, rename=()):
+    """Combine graphs G and H. The names of nodes must be unique.
+
+    A name collision between the graphs will raise an exception.
+
+    A renaming facility is provided to avoid name collisions.
+
+
+    Parameters
+    ----------
+    G, H : graph
+       A NetworkX graph
+
+    rename : iterable , optional
+       Node names of G and H can be changed by specifying the tuple
+       rename=('G-','H-') (for example).  Node "u" in G is then renamed
+       "G-u" and "v" in H is renamed "H-v".
+
+    Returns
+    -------
+    U : A union graph with the same type as G.
+
+    See Also
+    --------
+    compose
+    :func:`~networkx.Graph.update`
+    disjoint_union
+
+    Notes
+    -----
+    To combine graphs that have common nodes, consider compose(G, H)
+    or the method, Graph.update().
+
+    disjoint_union() is similar to union() except that it avoids name clashes
+    by relabeling the nodes with sequential integers.
+
+    Edge and node attributes are propagated from G and H to the union graph.
+    Graph attributes are also propagated, but if they are present in both G and H,
+    then the value from H is used.
+
+    Examples
+    --------
+    >>> G = nx.Graph([(0, 1), (0, 2), (1, 2)])
+    >>> H = nx.Graph([(0, 1), (0, 3), (1, 3), (1, 2)])
+    >>> U = nx.union(G, H, rename=("G", "H"))
+    >>> U.nodes
+    NodeView(('G0', 'G1', 'G2', 'H0', 'H1', 'H3', 'H2'))
+    >>> U.edges
+    EdgeView([('G0', 'G1'), ('G0', 'G2'), ('G1', 'G2'), ('H0', 'H1'), ('H0', 'H3'), ('H1', 'H3'), ('H1', 'H2')])
+
+
+    """
+    return nx.union_all([G, H], rename)
+
+
+@nx._dispatchable(graphs=_G_H, preserve_all_attrs=True, returns_graph=True)
+def disjoint_union(G, H):
+    """Combine graphs G and H. The nodes are assumed to be unique (disjoint).
+
+    This algorithm automatically relabels nodes to avoid name collisions.
+
+    Parameters
+    ----------
+    G,H : graph
+       A NetworkX graph
+
+    Returns
+    -------
+    U : A union graph with the same type as G.
+
+    See Also
+    --------
+    union
+    compose
+    :func:`~networkx.Graph.update`
+
+    Notes
+    -----
+    A new graph is created, of the same class as G.  It is recommended
+    that G and H be either both directed or both undirected.
+
+    The nodes of G are relabeled 0 to len(G)-1, and the nodes of H are
+    relabeled len(G) to len(G)+len(H)-1.
+
+    Renumbering forces G and H to be disjoint, so no exception is ever raised for a name collision.
+    To preserve the check for common nodes, use union().
+
+    Edge and node attributes are propagated from G and H to the union graph.
+    Graph attributes are also propagated, but if they are present in both G and H,
+    then the value from H is used.
+
+    To combine graphs that have common nodes, consider compose(G, H)
+    or the method, Graph.update().
+
+    Examples
+    --------
+    >>> G = nx.Graph([(0, 1), (0, 2), (1, 2)])
+    >>> H = nx.Graph([(0, 3), (1, 2), (2, 3)])
+    >>> G.nodes[0]["key1"] = 5
+    >>> H.nodes[0]["key2"] = 10
+    >>> U = nx.disjoint_union(G, H)
+    >>> U.nodes(data=True)
+    NodeDataView({0: {'key1': 5}, 1: {}, 2: {}, 3: {'key2': 10}, 4: {}, 5: {}, 6: {}})
+    >>> U.edges
+    EdgeView([(0, 1), (0, 2), (1, 2), (3, 4), (4, 6), (5, 6)])
+    """
+    return nx.disjoint_union_all([G, H])
+
+
+@nx._dispatchable(graphs=_G_H, returns_graph=True)
+def intersection(G, H):
+    """Returns a new graph that contains only the nodes and the edges that exist in
+    both G and H.
+
+    Parameters
+    ----------
+    G,H : graph
+       A NetworkX graph. G and H can have different node sets but must be both graphs or both multigraphs.
+
+    Raises
+    ------
+    NetworkXError
+        If one is a MultiGraph and the other one is a graph.
+
+    Returns
+    -------
+    GH : A new graph with the same type as G.
+
+    Notes
+    -----
+    Attributes from the graph, nodes, and edges are not copied to the new
+    graph.  If you want a new graph of the intersection of G and H
+    with the attributes (including edge data) from G use remove_nodes_from()
+    as follows
+
+    >>> G = nx.path_graph(3)
+    >>> H = nx.path_graph(5)
+    >>> R = G.copy()
+    >>> R.remove_nodes_from(n for n in G if n not in H)
+    >>> R.remove_edges_from(e for e in G.edges if e not in H.edges)
+
+    Examples
+    --------
+    >>> G = nx.Graph([(0, 1), (0, 2), (1, 2)])
+    >>> H = nx.Graph([(0, 3), (1, 2), (2, 3)])
+    >>> R = nx.intersection(G, H)
+    >>> R.nodes
+    NodeView((0, 1, 2))
+    >>> R.edges
+    EdgeView([(1, 2)])
+    """
+    return nx.intersection_all([G, H])
+
+
+@nx._dispatchable(graphs=_G_H, returns_graph=True)
+def difference(G, H):
+    """Returns a new graph that contains the edges that exist in G but not in H.
+
+    The node sets of H and G must be the same.
+
+    Parameters
+    ----------
+    G,H : graph
+       A NetworkX graph. G and H must have the same node sets.
+
+    Returns
+    -------
+    D : A new graph with the same type as G.
+
+    Notes
+    -----
+    Attributes from the graph, nodes, and edges are not copied to the new
+    graph.  If you want a new graph of the difference of G and H with
+    the attributes (including edge data) from G use remove_nodes_from()
+    as follows:
+
+    >>> G = nx.path_graph(3)
+    >>> H = nx.path_graph(5)
+    >>> R = G.copy()
+    >>> R.remove_nodes_from(n for n in G if n in H)
+
+    Examples
+    --------
+    >>> G = nx.Graph([(0, 1), (0, 2), (1, 2), (1, 3)])
+    >>> H = nx.Graph([(0, 1), (1, 2), (0, 3)])
+    >>> R = nx.difference(G, H)
+    >>> R.nodes
+    NodeView((0, 1, 2, 3))
+    >>> R.edges
+    EdgeView([(0, 2), (1, 3)])
+    """
+    # create new graph
+    if not G.is_multigraph() == H.is_multigraph():
+        raise nx.NetworkXError("G and H must both be graphs or multigraphs.")
+    R = nx.create_empty_copy(G, with_data=False)
+
+    if set(G) != set(H):
+        raise nx.NetworkXError("Node sets of graphs not equal")
+
+    if G.is_multigraph():
+        edges = G.edges(keys=True)
+    else:
+        edges = G.edges()
+    for e in edges:
+        if not H.has_edge(*e):
+            R.add_edge(*e)
+    return R
+
+
+@nx._dispatchable(graphs=_G_H, returns_graph=True)
+def symmetric_difference(G, H):
+    """Returns new graph with edges that exist in either G or H but not both.
+
+    The node sets of H and G must be the same.
+
+    Parameters
+    ----------
+    G,H : graph
+       A NetworkX graph.  G and H must have the same node sets.
+
+    Returns
+    -------
+    D : A new graph with the same type as G.
+
+    Notes
+    -----
+    Attributes from the graph, nodes, and edges are not copied to the new
+    graph.
+
+    Examples
+    --------
+    >>> G = nx.Graph([(0, 1), (0, 2), (1, 2), (1, 3)])
+    >>> H = nx.Graph([(0, 1), (1, 2), (0, 3)])
+    >>> R = nx.symmetric_difference(G, H)
+    >>> R.nodes
+    NodeView((0, 1, 2, 3))
+    >>> R.edges
+    EdgeView([(0, 2), (0, 3), (1, 3)])
+    """
+    # create new graph
+    if not G.is_multigraph() == H.is_multigraph():
+        raise nx.NetworkXError("G and H must both be graphs or multigraphs.")
+    R = nx.create_empty_copy(G, with_data=False)
+
+    if set(G) != set(H):
+        raise nx.NetworkXError("Node sets of graphs not equal")
+
+    gnodes = set(G)  # set of nodes in G
+    hnodes = set(H)  # set of nodes in H
+    nodes = gnodes.symmetric_difference(hnodes)
+    R.add_nodes_from(nodes)
+
+    if G.is_multigraph():
+        edges = G.edges(keys=True)
+    else:
+        edges = G.edges()
+    # we could copy the data here but then this function doesn't
+    # match intersection and difference
+    for e in edges:
+        if not H.has_edge(*e):
+            R.add_edge(*e)
+
+    if H.is_multigraph():
+        edges = H.edges(keys=True)
+    else:
+        edges = H.edges()
+    for e in edges:
+        if not G.has_edge(*e):
+            R.add_edge(*e)
+    return R
+
+
+@nx._dispatchable(graphs=_G_H, preserve_all_attrs=True, returns_graph=True)
+def compose(G, H):
+    """Compose graph G with H by combining nodes and edges into a single graph.
+
+    The node sets and edges sets do not need to be disjoint.
+
+    Composing preserves the attributes of nodes and edges.
+    Attribute values from H take precedent over attribute values from G.
+
+    Parameters
+    ----------
+    G, H : graph
+       A NetworkX graph
+
+    Returns
+    -------
+    C: A new graph with the same type as G
+
+    See Also
+    --------
+    :func:`~networkx.Graph.update`
+    union
+    disjoint_union
+
+    Notes
+    -----
+    It is recommended that G and H be either both directed or both undirected.
+
+    For MultiGraphs, the edges are identified by incident nodes AND edge-key.
+    This can cause surprises (i.e., edge `(1, 2)` may or may not be the same
+    in two graphs) if you use MultiGraph without keeping track of edge keys.
+
+    If combining the attributes of common nodes is not desired, consider union(),
+    which raises an exception for name collisions.
+
+    Examples
+    --------
+    >>> G = nx.Graph([(0, 1), (0, 2)])
+    >>> H = nx.Graph([(0, 1), (1, 2)])
+    >>> R = nx.compose(G, H)
+    >>> R.nodes
+    NodeView((0, 1, 2))
+    >>> R.edges
+    EdgeView([(0, 1), (0, 2), (1, 2)])
+
+    By default, the attributes from `H` take precedent over attributes from `G`.
+    If you prefer another way of combining attributes, you can update them after the compose operation:
+
+    >>> G = nx.Graph([(0, 1, {"weight": 2.0}), (3, 0, {"weight": 100.0})])
+    >>> H = nx.Graph([(0, 1, {"weight": 10.0}), (1, 2, {"weight": -1.0})])
+    >>> nx.set_node_attributes(G, {0: "dark", 1: "light", 3: "black"}, name="color")
+    >>> nx.set_node_attributes(H, {0: "green", 1: "orange", 2: "yellow"}, name="color")
+    >>> GcomposeH = nx.compose(G, H)
+
+    Normally, color attribute values of nodes of GcomposeH come from H. We can workaround this as follows:
+
+    >>> node_data = {
+    ...     n: G.nodes[n]["color"] + " " + H.nodes[n]["color"]
+    ...     for n in G.nodes & H.nodes
+    ... }
+    >>> nx.set_node_attributes(GcomposeH, node_data, "color")
+    >>> print(GcomposeH.nodes[0]["color"])
+    dark green
+
+    >>> print(GcomposeH.nodes[3]["color"])
+    black
+
+    Similarly, we can update edge attributes after the compose operation in a way we prefer:
+
+    >>> edge_data = {
+    ...     e: G.edges[e]["weight"] * H.edges[e]["weight"] for e in G.edges & H.edges
+    ... }
+    >>> nx.set_edge_attributes(GcomposeH, edge_data, "weight")
+    >>> print(GcomposeH.edges[(0, 1)]["weight"])
+    20.0
+
+    >>> print(GcomposeH.edges[(3, 0)]["weight"])
+    100.0
+    """
+    return nx.compose_all([G, H])
+
+
+@nx._dispatchable(graphs=_G_H, preserve_all_attrs=True, returns_graph=True)
+def full_join(G, H, rename=(None, None)):
+    """Returns the full join of graphs G and H.
+
+    Full join is the union of G and H in which all edges between
+    G and H are added.
+    The node sets of G and H must be disjoint,
+    otherwise an exception is raised.
+
+    Parameters
+    ----------
+    G, H : graph
+       A NetworkX graph
+
+    rename : tuple , default=(None, None)
+       Node names of G and H can be changed by specifying the tuple
+       rename=('G-','H-') (for example).  Node "u" in G is then renamed
+       "G-u" and "v" in H is renamed "H-v".
+
+    Returns
+    -------
+    U : The full join graph with the same type as G.
+
+    Notes
+    -----
+    It is recommended that G and H be either both directed or both undirected.
+
+    If G is directed, then edges from G to H are added as well as from H to G.
+
+    Note that full_join() does not produce parallel edges for MultiGraphs.
+
+    The full join operation of graphs G and H is the same as getting
+    their complement, performing a disjoint union, and finally getting
+    the complement of the resulting graph.
+
+    Graph, edge, and node attributes are propagated from G and H
+    to the union graph.  If a graph attribute is present in both
+    G and H the value from H is used.
+
+    Examples
+    --------
+    >>> G = nx.Graph([(0, 1), (0, 2)])
+    >>> H = nx.Graph([(3, 4)])
+    >>> R = nx.full_join(G, H, rename=("G", "H"))
+    >>> R.nodes
+    NodeView(('G0', 'G1', 'G2', 'H3', 'H4'))
+    >>> R.edges
+    EdgeView([('G0', 'G1'), ('G0', 'G2'), ('G0', 'H3'), ('G0', 'H4'), ('G1', 'H3'), ('G1', 'H4'), ('G2', 'H3'), ('G2', 'H4'), ('H3', 'H4')])
+
+    See Also
+    --------
+    union
+    disjoint_union
+    """
+    R = union(G, H, rename)
+
+    def add_prefix(graph, prefix):
+        if prefix is None:
+            return graph
+
+        def label(x):
+            return f"{prefix}{x}"
+
+        return nx.relabel_nodes(graph, label)
+
+    G = add_prefix(G, rename[0])
+    H = add_prefix(H, rename[1])
+
+    for i in G:
+        for j in H:
+            R.add_edge(i, j)
+    if R.is_directed():
+        for i in H:
+            for j in G:
+                R.add_edge(i, j)
+
+    return R

wemm/lib/python3.10/site-packages/networkx/algorithms/operators/product.py

@@ -0,0 +1,633 @@
+"""
+Graph products.
+"""
+
+from itertools import product
+
+import networkx as nx
+from networkx.utils import not_implemented_for
+
+__all__ = [
+    "tensor_product",
+    "cartesian_product",
+    "lexicographic_product",
+    "strong_product",
+    "power",
+    "rooted_product",
+    "corona_product",
+    "modular_product",
+]
+_G_H = {"G": 0, "H": 1}
+
+
+def _dict_product(d1, d2):
+    return {k: (d1.get(k), d2.get(k)) for k in set(d1) | set(d2)}
+
+
+# Generators for producing graph products
+def _node_product(G, H):
+    for u, v in product(G, H):
+        yield ((u, v), _dict_product(G.nodes[u], H.nodes[v]))
+
+
+def _directed_edges_cross_edges(G, H):
+    if not G.is_multigraph() and not H.is_multigraph():
+        for u, v, c in G.edges(data=True):
+            for x, y, d in H.edges(data=True):
+                yield (u, x), (v, y), _dict_product(c, d)
+    if not G.is_multigraph() and H.is_multigraph():
+        for u, v, c in G.edges(data=True):
+            for x, y, k, d in H.edges(data=True, keys=True):
+                yield (u, x), (v, y), k, _dict_product(c, d)
+    if G.is_multigraph() and not H.is_multigraph():
+        for u, v, k, c in G.edges(data=True, keys=True):
+            for x, y, d in H.edges(data=True):
+                yield (u, x), (v, y), k, _dict_product(c, d)
+    if G.is_multigraph() and H.is_multigraph():
+        for u, v, j, c in G.edges(data=True, keys=True):
+            for x, y, k, d in H.edges(data=True, keys=True):
+                yield (u, x), (v, y), (j, k), _dict_product(c, d)
+
+
+def _undirected_edges_cross_edges(G, H):
+    if not G.is_multigraph() and not H.is_multigraph():
+        for u, v, c in G.edges(data=True):
+            for x, y, d in H.edges(data=True):
+                yield (v, x), (u, y), _dict_product(c, d)
+    if not G.is_multigraph() and H.is_multigraph():
+        for u, v, c in G.edges(data=True):
+            for x, y, k, d in H.edges(data=True, keys=True):
+                yield (v, x), (u, y), k, _dict_product(c, d)
+    if G.is_multigraph() and not H.is_multigraph():
+        for u, v, k, c in G.edges(data=True, keys=True):
+            for x, y, d in H.edges(data=True):
+                yield (v, x), (u, y), k, _dict_product(c, d)
+    if G.is_multigraph() and H.is_multigraph():
+        for u, v, j, c in G.edges(data=True, keys=True):
+            for x, y, k, d in H.edges(data=True, keys=True):
+                yield (v, x), (u, y), (j, k), _dict_product(c, d)
+
+
+def _edges_cross_nodes(G, H):
+    if G.is_multigraph():
+        for u, v, k, d in G.edges(data=True, keys=True):
+            for x in H:
+                yield (u, x), (v, x), k, d
+    else:
+        for u, v, d in G.edges(data=True):
+            for x in H:
+                if H.is_multigraph():
+                    yield (u, x), (v, x), None, d
+                else:
+                    yield (u, x), (v, x), d
+
+
+def _nodes_cross_edges(G, H):
+    if H.is_multigraph():
+        for x in G:
+            for u, v, k, d in H.edges(data=True, keys=True):
+                yield (x, u), (x, v), k, d
+    else:
+        for x in G:
+            for u, v, d in H.edges(data=True):
+                if G.is_multigraph():
+                    yield (x, u), (x, v), None, d
+                else:
+                    yield (x, u), (x, v), d
+
+
+def _edges_cross_nodes_and_nodes(G, H):
+    if G.is_multigraph():
+        for u, v, k, d in G.edges(data=True, keys=True):
+            for x in H:
+                for y in H:
+                    yield (u, x), (v, y), k, d
+    else:
+        for u, v, d in G.edges(data=True):
+            for x in H:
+                for y in H:
+                    if H.is_multigraph():
+                        yield (u, x), (v, y), None, d
+                    else:
+                        yield (u, x), (v, y), d
+
+
+def _init_product_graph(G, H):
+    if G.is_directed() != H.is_directed():
+        msg = "G and H must be both directed or both undirected"
+        raise nx.NetworkXError(msg)
+    if G.is_multigraph() or H.is_multigraph():
+        GH = nx.MultiGraph()
+    else:
+        GH = nx.Graph()
+    if G.is_directed():
+        GH = GH.to_directed()
+    return GH
+
+
+@nx._dispatchable(graphs=_G_H, preserve_node_attrs=True, returns_graph=True)
+def tensor_product(G, H):
+    r"""Returns the tensor product of G and H.
+
+    The tensor product $P$ of the graphs $G$ and $H$ has a node set that
+    is the Cartesian product of the node sets, $V(P)=V(G) \times V(H)$.
+    $P$ has an edge $((u,v), (x,y))$ if and only if $(u,x)$ is an edge in $G$
+    and $(v,y)$ is an edge in $H$.
+
+    Tensor product is sometimes also referred to as the categorical product,
+    direct product, cardinal product or conjunction.
+
+
+    Parameters
+    ----------
+    G, H: graphs
+     Networkx graphs.
+
+    Returns
+    -------
+    P: NetworkX graph
+     The tensor product of G and H. P will be a multi-graph if either G
+     or H is a multi-graph, will be a directed if G and H are directed,
+     and undirected if G and H are undirected.
+
+    Raises
+    ------
+    NetworkXError
+     If G and H are not both directed or both undirected.
+
+    Notes
+    -----
+    Node attributes in P are two-tuple of the G and H node attributes.
+    Missing attributes are assigned None.
+
+    Examples
+    --------
+    >>> G = nx.Graph()
+    >>> H = nx.Graph()
+    >>> G.add_node(0, a1=True)
+    >>> H.add_node("a", a2="Spam")
+    >>> P = nx.tensor_product(G, H)
+    >>> list(P)
+    [(0, 'a')]
+
+    Edge attributes and edge keys (for multigraphs) are also copied to the
+    new product graph
+    """
+    GH = _init_product_graph(G, H)
+    GH.add_nodes_from(_node_product(G, H))
+    GH.add_edges_from(_directed_edges_cross_edges(G, H))
+    if not GH.is_directed():
+        GH.add_edges_from(_undirected_edges_cross_edges(G, H))
+    return GH
+
+
+@nx._dispatchable(graphs=_G_H, preserve_node_attrs=True, returns_graph=True)
+def cartesian_product(G, H):
+    r"""Returns the Cartesian product of G and H.
+
+    The Cartesian product $P$ of the graphs $G$ and $H$ has a node set that
+    is the Cartesian product of the node sets, $V(P)=V(G) \times V(H)$.
+    $P$ has an edge $((u,v),(x,y))$ if and only if either $u$ is equal to $x$
+    and both $v$ and $y$ are adjacent in $H$ or if $v$ is equal to $y$ and
+    both $u$ and $x$ are adjacent in $G$.
+
+    Parameters
+    ----------
+    G, H: graphs
+     Networkx graphs.
+
+    Returns
+    -------
+    P: NetworkX graph
+     The Cartesian product of G and H. P will be a multi-graph if either G
+     or H is a multi-graph. Will be a directed if G and H are directed,
+     and undirected if G and H are undirected.
+
+    Raises
+    ------
+    NetworkXError
+     If G and H are not both directed or both undirected.
+
+    Notes
+    -----
+    Node attributes in P are two-tuple of the G and H node attributes.
+    Missing attributes are assigned None.
+
+    Examples
+    --------
+    >>> G = nx.Graph()
+    >>> H = nx.Graph()
+    >>> G.add_node(0, a1=True)
+    >>> H.add_node("a", a2="Spam")
+    >>> P = nx.cartesian_product(G, H)
+    >>> list(P)
+    [(0, 'a')]
+
+    Edge attributes and edge keys (for multigraphs) are also copied to the
+    new product graph
+    """
+    GH = _init_product_graph(G, H)
+    GH.add_nodes_from(_node_product(G, H))
+    GH.add_edges_from(_edges_cross_nodes(G, H))
+    GH.add_edges_from(_nodes_cross_edges(G, H))
+    return GH
+
+
+@nx._dispatchable(graphs=_G_H, preserve_node_attrs=True, returns_graph=True)
+def lexicographic_product(G, H):
+    r"""Returns the lexicographic product of G and H.
+
+    The lexicographical product $P$ of the graphs $G$ and $H$ has a node set
+    that is the Cartesian product of the node sets, $V(P)=V(G) \times V(H)$.
+    $P$ has an edge $((u,v), (x,y))$ if and only if $(u,v)$ is an edge in $G$
+    or $u==v$ and $(x,y)$ is an edge in $H$.
+
+    Parameters
+    ----------
+    G, H: graphs
+     Networkx graphs.
+
+    Returns
+    -------
+    P: NetworkX graph
+     The Cartesian product of G and H. P will be a multi-graph if either G
+     or H is a multi-graph. Will be a directed if G and H are directed,
+     and undirected if G and H are undirected.
+
+    Raises
+    ------
+    NetworkXError
+     If G and H are not both directed or both undirected.
+
+    Notes
+    -----
+    Node attributes in P are two-tuple of the G and H node attributes.
+    Missing attributes are assigned None.
+
+    Examples
+    --------
+    >>> G = nx.Graph()
+    >>> H = nx.Graph()
+    >>> G.add_node(0, a1=True)
+    >>> H.add_node("a", a2="Spam")
+    >>> P = nx.lexicographic_product(G, H)
+    >>> list(P)
+    [(0, 'a')]
+
+    Edge attributes and edge keys (for multigraphs) are also copied to the
+    new product graph
+    """
+    GH = _init_product_graph(G, H)
+    GH.add_nodes_from(_node_product(G, H))
+    # Edges in G regardless of H designation
+    GH.add_edges_from(_edges_cross_nodes_and_nodes(G, H))
+    # For each x in G, only if there is an edge in H
+    GH.add_edges_from(_nodes_cross_edges(G, H))
+    return GH
+
+
+@nx._dispatchable(graphs=_G_H, preserve_node_attrs=True, returns_graph=True)
+def strong_product(G, H):
+    r"""Returns the strong product of G and H.
+
+    The strong product $P$ of the graphs $G$ and $H$ has a node set that
+    is the Cartesian product of the node sets, $V(P)=V(G) \times V(H)$.
+    $P$ has an edge $((u,x), (v,y))$ if any of the following conditions
+    are met:
+
+    - $u=v$ and $(x,y)$ is an edge in $H$
+    - $x=y$ and $(u,v)$ is an edge in $G$
+    - $(u,v)$ is an edge in $G$ and $(x,y)$ is an edge in $H$
+
+    Parameters
+    ----------
+    G, H: graphs
+     Networkx graphs.
+
+    Returns
+    -------
+    P: NetworkX graph
+     The Cartesian product of G and H. P will be a multi-graph if either G
+     or H is a multi-graph. Will be a directed if G and H are directed,
+     and undirected if G and H are undirected.
+
+    Raises
+    ------
+    NetworkXError
+     If G and H are not both directed or both undirected.
+
+    Notes
+    -----
+    Node attributes in P are two-tuple of the G and H node attributes.
+    Missing attributes are assigned None.
+
+    Examples
+    --------
+    >>> G = nx.Graph()
+    >>> H = nx.Graph()
+    >>> G.add_node(0, a1=True)
+    >>> H.add_node("a", a2="Spam")
+    >>> P = nx.strong_product(G, H)
+    >>> list(P)
+    [(0, 'a')]
+
+    Edge attributes and edge keys (for multigraphs) are also copied to the
+    new product graph
+    """
+    GH = _init_product_graph(G, H)
+    GH.add_nodes_from(_node_product(G, H))
+    GH.add_edges_from(_nodes_cross_edges(G, H))
+    GH.add_edges_from(_edges_cross_nodes(G, H))
+    GH.add_edges_from(_directed_edges_cross_edges(G, H))
+    if not GH.is_directed():
+        GH.add_edges_from(_undirected_edges_cross_edges(G, H))
+    return GH
+
+
+@not_implemented_for("directed")
+@not_implemented_for("multigraph")
+@nx._dispatchable(returns_graph=True)
+def power(G, k):
+    """Returns the specified power of a graph.
+
+    The $k$th power of a simple graph $G$, denoted $G^k$, is a
+    graph on the same set of nodes in which two distinct nodes $u$ and
+    $v$ are adjacent in $G^k$ if and only if the shortest path
+    distance between $u$ and $v$ in $G$ is at most $k$.
+
+    Parameters
+    ----------
+    G : graph
+        A NetworkX simple graph object.
+
+    k : positive integer
+        The power to which to raise the graph `G`.
+
+    Returns
+    -------
+    NetworkX simple graph
+        `G` to the power `k`.
+
+    Raises
+    ------
+    ValueError
+        If the exponent `k` is not positive.
+
+    NetworkXNotImplemented
+        If `G` is not a simple graph.
+
+    Examples
+    --------
+    The number of edges will never decrease when taking successive
+    powers:
+
+    >>> G = nx.path_graph(4)
+    >>> list(nx.power(G, 2).edges)
+    [(0, 1), (0, 2), (1, 2), (1, 3), (2, 3)]
+    >>> list(nx.power(G, 3).edges)
+    [(0, 1), (0, 2), (0, 3), (1, 2), (1, 3), (2, 3)]
+
+    The `k` th power of a cycle graph on *n* nodes is the complete graph
+    on *n* nodes, if `k` is at least ``n // 2``:
+
+    >>> G = nx.cycle_graph(5)
+    >>> H = nx.complete_graph(5)
+    >>> nx.is_isomorphic(nx.power(G, 2), H)
+    True
+    >>> G = nx.cycle_graph(8)
+    >>> H = nx.complete_graph(8)
+    >>> nx.is_isomorphic(nx.power(G, 4), H)
+    True
+
+    References
+    ----------
+    .. [1] J. A. Bondy, U. S. R. Murty, *Graph Theory*. Springer, 2008.
+
+    Notes
+    -----
+    This definition of "power graph" comes from Exercise 3.1.6 of
+    *Graph Theory* by Bondy and Murty [1]_.
+
+    """
+    if k <= 0:
+        raise ValueError("k must be a positive integer")
+    H = nx.Graph()
+    H.add_nodes_from(G)
+    # update BFS code to ignore self loops.
+    for n in G:
+        seen = {}  # level (number of hops) when seen in BFS
+        level = 1  # the current level
+        nextlevel = G[n]
+        while nextlevel:
+            thislevel = nextlevel  # advance to next level
+            nextlevel = {}  # and start a new list (fringe)
+            for v in thislevel:
+                if v == n:  # avoid self loop
+                    continue
+                if v not in seen:
+                    seen[v] = level  # set the level of vertex v
+                    nextlevel.update(G[v])  # add neighbors of v
+            if k <= level:
+                break
+            level += 1
+        H.add_edges_from((n, nbr) for nbr in seen)
+    return H
+
+
+@not_implemented_for("multigraph")
+@nx._dispatchable(graphs=_G_H, returns_graph=True)
+def rooted_product(G, H, root):
+    """Return the rooted product of graphs G and H rooted at root in H.
+
+    A new graph is constructed representing the rooted product of
+    the inputted graphs, G and H, with a root in H.
+    A rooted product duplicates H for each nodes in G with the root
+    of H corresponding to the node in G. Nodes are renamed as the direct
+    product of G and H. The result is a subgraph of the cartesian product.
+
+    Parameters
+    ----------
+    G,H : graph
+       A NetworkX graph
+    root : node
+       A node in H
+
+    Returns
+    -------
+    R : The rooted product of G and H with a specified root in H
+
+    Notes
+    -----
+    The nodes of R are the Cartesian Product of the nodes of G and H.
+    The nodes of G and H are not relabeled.
+    """
+    if root not in H:
+        raise nx.NodeNotFound("root must be a vertex in H")
+
+    R = nx.Graph()
+    R.add_nodes_from(product(G, H))
+
+    R.add_edges_from(((e[0], root), (e[1], root)) for e in G.edges())
+    R.add_edges_from(((g, e[0]), (g, e[1])) for g in G for e in H.edges())
+
+    return R
+
+
+@not_implemented_for("directed")
+@not_implemented_for("multigraph")
+@nx._dispatchable(graphs=_G_H, returns_graph=True)
+def corona_product(G, H):
+    r"""Returns the Corona product of G and H.
+
+    The corona product of $G$ and $H$ is the graph $C = G \circ H$ obtained by
+    taking one copy of $G$, called the center graph, $|V(G)|$ copies of $H$,
+    called the outer graph, and making the $i$-th vertex of $G$ adjacent to
+    every vertex of the $i$-th copy of $H$, where $1 ≤ i ≤ |V(G)|$.
+
+    Parameters
+    ----------
+    G, H: NetworkX graphs
+        The graphs to take the carona product of.
+        `G` is the center graph and `H` is the outer graph
+
+    Returns
+    -------
+    C: NetworkX graph
+        The Corona product of G and H.
+
+    Raises
+    ------
+    NetworkXError
+        If G and H are not both directed or both undirected.
+
+    Examples
+    --------
+    >>> G = nx.cycle_graph(4)
+    >>> H = nx.path_graph(2)
+    >>> C = nx.corona_product(G, H)
+    >>> list(C)
+    [0, 1, 2, 3, (0, 0), (0, 1), (1, 0), (1, 1), (2, 0), (2, 1), (3, 0), (3, 1)]
+    >>> print(C)
+    Graph with 12 nodes and 16 edges
+
+    References
+    ----------
+    [1] M. Tavakoli, F. Rahbarnia, and A. R. Ashrafi,
+        "Studying the corona product of graphs under some graph invariants,"
+        Transactions on Combinatorics, vol. 3, no. 3, pp. 43–49, Sep. 2014,
+        doi: 10.22108/toc.2014.5542.
+    [2] A. Faraji, "Corona Product in Graph Theory," Ali Faraji, May 11, 2021.
+        https://blog.alifaraji.ir/math/graph-theory/corona-product.html (accessed Dec. 07, 2021).
+    """
+    GH = _init_product_graph(G, H)
+    GH.add_nodes_from(G)
+    GH.add_edges_from(G.edges)
+
+    for G_node in G:
+        # copy nodes of H in GH, call it H_i
+        GH.add_nodes_from((G_node, v) for v in H)
+
+        # copy edges of H_i based on H
+        GH.add_edges_from(
+            ((G_node, e0), (G_node, e1), d) for e0, e1, d in H.edges.data()
+        )
+
+        # creating new edges between H_i and a G's node
+        GH.add_edges_from((G_node, (G_node, H_node)) for H_node in H)
+
+    return GH
+
+
+@nx._dispatchable(
+    graphs=_G_H, preserve_edge_attrs=True, preserve_node_attrs=True, returns_graph=True
+)
+def modular_product(G, H):
+    r"""Returns the Modular product of G and H.
+
+    The modular product of `G` and `H` is the graph $M = G \nabla H$,
+    consisting of the node set $V(M) = V(G) \times V(H)$ that is the Cartesian
+    product of the node sets of `G` and `H`. Further, M contains an edge ((u, v), (x, y)):
+
+    - if u is adjacent to x in `G` and v is adjacent to y in `H`, or
+    - if u is not adjacent to x in `G` and v is not adjacent to y in `H`.
+
+    More formally::
+
+        E(M) = {((u, v), (x, y)) | ((u, x) in E(G) and (v, y) in E(H)) or
+                                   ((u, x) not in E(G) and (v, y) not in E(H))}
+
+    Parameters
+    ----------
+    G, H: NetworkX graphs
+        The graphs to take the modular product of.
+
+    Returns
+    -------
+    M: NetworkX graph
+        The Modular product of `G` and `H`.
+
+    Raises
+    ------
+    NetworkXNotImplemented
+        If `G` is not a simple graph.
+
+    Examples
+    --------
+    >>> G = nx.cycle_graph(4)
+    >>> H = nx.path_graph(2)
+    >>> M = nx.modular_product(G, H)
+    >>> list(M)
+    [(0, 0), (0, 1), (1, 0), (1, 1), (2, 0), (2, 1), (3, 0), (3, 1)]
+    >>> print(M)
+    Graph with 8 nodes and 8 edges
+
+    Notes
+    -----
+    The *modular product* is defined in [1]_ and was first
+    introduced as the *weak modular product*.
+
+    The modular product reduces the problem of counting isomorphic subgraphs
+    in `G` and `H` to the problem of counting cliques in M. The subgraphs of
+    `G` and `H` that are induced by the nodes of a clique in M are
+    isomorphic [2]_ [3]_.
+
+    References
+    ----------
+    .. [1] R. Hammack, W. Imrich, and S. Klavžar,
+        "Handbook of Product Graphs", CRC Press, 2011.
+
+    .. [2] H. G. Barrow and R. M. Burstall,
+        "Subgraph isomorphism, matching relational structures and maximal
+        cliques", Information Processing Letters, vol. 4, issue 4, pp. 83-84,
+        1976, https://doi.org/10.1016/0020-0190(76)90049-1.
+
+    .. [3] V. G. Vizing, "Reduction of the problem of isomorphism and isomorphic
+        entrance to the task of finding the nondensity of a graph." Proc. Third
+        All-Union Conference on Problems of Theoretical Cybernetics. 1974.
+    """
+    if G.is_directed() or H.is_directed():
+        raise nx.NetworkXNotImplemented(
+            "Modular product not implemented for directed graphs"
+        )
+    if G.is_multigraph() or H.is_multigraph():
+        raise nx.NetworkXNotImplemented(
+            "Modular product not implemented for multigraphs"
+        )
+
+    GH = _init_product_graph(G, H)
+    GH.add_nodes_from(_node_product(G, H))
+
+    for u, v, c in G.edges(data=True):
+        for x, y, d in H.edges(data=True):
+            GH.add_edge((u, x), (v, y), **_dict_product(c, d))
+            GH.add_edge((v, x), (u, y), **_dict_product(c, d))
+
+    G = nx.complement(G)
+    H = nx.complement(H)
+
+    for u, v, c in G.edges(data=True):
+        for x, y, d in H.edges(data=True):
+            GH.add_edge((u, x), (v, y), **_dict_product(c, d))
+            GH.add_edge((v, x), (u, y), **_dict_product(c, d))
+
+    return GH

wemm/lib/python3.10/site-packages/networkx/algorithms/operators/unary.py

@@ -0,0 +1,77 @@
+"""Unary operations on graphs"""
+
+import networkx as nx
+
+__all__ = ["complement", "reverse"]
+
+
+@nx._dispatchable(returns_graph=True)
+def complement(G):
+    """Returns the graph complement of G.
+
+    Parameters
+    ----------
+    G : graph
+       A NetworkX graph
+
+    Returns
+    -------
+    GC : A new graph.
+
+    Notes
+    -----
+    Note that `complement` does not create self-loops and also
+    does not produce parallel edges for MultiGraphs.
+
+    Graph, node, and edge data are not propagated to the new graph.
+
+    Examples
+    --------
+    >>> G = nx.Graph([(1, 2), (1, 3), (2, 3), (3, 4), (3, 5)])
+    >>> G_complement = nx.complement(G)
+    >>> G_complement.edges()  # This shows the edges of the complemented graph
+    EdgeView([(1, 4), (1, 5), (2, 4), (2, 5), (4, 5)])
+
+    """
+    R = G.__class__()
+    R.add_nodes_from(G)
+    R.add_edges_from(
+        ((n, n2) for n, nbrs in G.adjacency() for n2 in G if n2 not in nbrs if n != n2)
+    )
+    return R
+
+
+@nx._dispatchable(returns_graph=True)
+def reverse(G, copy=True):
+    """Returns the reverse directed graph of G.
+
+    Parameters
+    ----------
+    G : directed graph
+        A NetworkX directed graph
+    copy : bool
+        If True, then a new graph is returned. If False, then the graph is
+        reversed in place.
+
+    Returns
+    -------
+    H : directed graph
+        The reversed G.
+
+    Raises
+    ------
+    NetworkXError
+        If graph is undirected.
+
+    Examples
+    --------
+    >>> G = nx.DiGraph([(1, 2), (1, 3), (2, 3), (3, 4), (3, 5)])
+    >>> G_reversed = nx.reverse(G)
+    >>> G_reversed.edges()
+    OutEdgeView([(2, 1), (3, 1), (3, 2), (4, 3), (5, 3)])
+
+    """
+    if not G.is_directed():
+        raise nx.NetworkXError("Cannot reverse an undirected graph.")
+    else:
+        return G.reverse(copy=copy)

wemm/lib/python3.10/site-packages/networkx/drawing/layout.py

@@ -0,0 +1,1630 @@
+"""
+******
+Layout
+******
+
+Node positioning algorithms for graph drawing.
+
+For `random_layout()` the possible resulting shape
+is a square of side [0, scale] (default: [0, 1])
+Changing `center` shifts the layout by that amount.
+
+For the other layout routines, the extent is
+[center - scale, center + scale] (default: [-1, 1]).
+
+Warning: Most layout routines have only been tested in 2-dimensions.
+
+"""
+
+import networkx as nx
+from networkx.utils import np_random_state
+
+__all__ = [
+    "bipartite_layout",
+    "circular_layout",
+    "forceatlas2_layout",
+    "kamada_kawai_layout",
+    "random_layout",
+    "rescale_layout",
+    "rescale_layout_dict",
+    "shell_layout",
+    "spring_layout",
+    "spectral_layout",
+    "planar_layout",
+    "fruchterman_reingold_layout",
+    "spiral_layout",
+    "multipartite_layout",
+    "bfs_layout",
+    "arf_layout",
+]
+
+
+def _process_params(G, center, dim):
+    # Some boilerplate code.
+    import numpy as np
+
+    if not isinstance(G, nx.Graph):
+        empty_graph = nx.Graph()
+        empty_graph.add_nodes_from(G)
+        G = empty_graph
+
+    if center is None:
+        center = np.zeros(dim)
+    else:
+        center = np.asarray(center)
+
+    if len(center) != dim:
+        msg = "length of center coordinates must match dimension of layout"
+        raise ValueError(msg)
+
+    return G, center
+
+
+@np_random_state(3)
+def random_layout(G, center=None, dim=2, seed=None):
+    """Position nodes uniformly at random in the unit square.
+
+    For every node, a position is generated by choosing each of dim
+    coordinates uniformly at random on the interval [0.0, 1.0).
+
+    NumPy (http://scipy.org) is required for this function.
+
+    Parameters
+    ----------
+    G : NetworkX graph or list of nodes
+        A position will be assigned to every node in G.
+
+    center : array-like or None
+        Coordinate pair around which to center the layout.
+
+    dim : int
+        Dimension of layout.
+
+    seed : int, RandomState instance or None  optional (default=None)
+        Set the random state for deterministic node layouts.
+        If int, `seed` is the seed used by the random number generator,
+        if numpy.random.RandomState instance, `seed` is the random
+        number generator,
+        if None, the random number generator is the RandomState instance used
+        by numpy.random.
+
+    Returns
+    -------
+    pos : dict
+        A dictionary of positions keyed by node
+
+    Examples
+    --------
+    >>> G = nx.lollipop_graph(4, 3)
+    >>> pos = nx.random_layout(G)
+
+    """
+    import numpy as np
+
+    G, center = _process_params(G, center, dim)
+    pos = seed.rand(len(G), dim) + center
+    pos = pos.astype(np.float32)
+    pos = dict(zip(G, pos))
+
+    return pos
+
+
+def circular_layout(G, scale=1, center=None, dim=2):
+    # dim=2 only
+    """Position nodes on a circle.
+
+    Parameters
+    ----------
+    G : NetworkX graph or list of nodes
+        A position will be assigned to every node in G.
+
+    scale : number (default: 1)
+        Scale factor for positions.
+
+    center : array-like or None
+        Coordinate pair around which to center the layout.
+
+    dim : int
+        Dimension of layout.
+        If dim>2, the remaining dimensions are set to zero
+        in the returned positions.
+        If dim<2, a ValueError is raised.
+
+    Returns
+    -------
+    pos : dict
+        A dictionary of positions keyed by node
+
+    Raises
+    ------
+    ValueError
+        If dim < 2
+
+    Examples
+    --------
+    >>> G = nx.path_graph(4)
+    >>> pos = nx.circular_layout(G)
+
+    Notes
+    -----
+    This algorithm currently only works in two dimensions and does not
+    try to minimize edge crossings.
+
+    """
+    import numpy as np
+
+    if dim < 2:
+        raise ValueError("cannot handle dimensions < 2")
+
+    G, center = _process_params(G, center, dim)
+
+    paddims = max(0, (dim - 2))
+
+    if len(G) == 0:
+        pos = {}
+    elif len(G) == 1:
+        pos = {nx.utils.arbitrary_element(G): center}
+    else:
+        # Discard the extra angle since it matches 0 radians.
+        theta = np.linspace(0, 1, len(G) + 1)[:-1] * 2 * np.pi
+        theta = theta.astype(np.float32)
+        pos = np.column_stack(
+            [np.cos(theta), np.sin(theta), np.zeros((len(G), paddims))]
+        )
+        pos = rescale_layout(pos, scale=scale) + center
+        pos = dict(zip(G, pos))
+
+    return pos
+
+
+def shell_layout(G, nlist=None, rotate=None, scale=1, center=None, dim=2):
+    """Position nodes in concentric circles.
+
+    Parameters
+    ----------
+    G : NetworkX graph or list of nodes
+        A position will be assigned to every node in G.
+
+    nlist : list of lists
+       List of node lists for each shell.
+
+    rotate : angle in radians (default=pi/len(nlist))
+       Angle by which to rotate the starting position of each shell
+       relative to the starting position of the previous shell.
+       To recreate behavior before v2.5 use rotate=0.
+
+    scale : number (default: 1)
+        Scale factor for positions.
+
+    center : array-like or None
+        Coordinate pair around which to center the layout.
+
+    dim : int
+        Dimension of layout, currently only dim=2 is supported.
+        Other dimension values result in a ValueError.
+
+    Returns
+    -------
+    pos : dict
+        A dictionary of positions keyed by node
+
+    Raises
+    ------
+    ValueError
+        If dim != 2
+
+    Examples
+    --------
+    >>> G = nx.path_graph(4)
+    >>> shells = [[0], [1, 2, 3]]
+    >>> pos = nx.shell_layout(G, shells)
+
+    Notes
+    -----
+    This algorithm currently only works in two dimensions and does not
+    try to minimize edge crossings.
+
+    """
+    import numpy as np
+
+    if dim != 2:
+        raise ValueError("can only handle 2 dimensions")
+
+    G, center = _process_params(G, center, dim)
+
+    if len(G) == 0:
+        return {}
+    if len(G) == 1:
+        return {nx.utils.arbitrary_element(G): center}
+
+    if nlist is None:
+        # draw the whole graph in one shell
+        nlist = [list(G)]
+
+    radius_bump = scale / len(nlist)
+
+    if len(nlist[0]) == 1:
+        # single node at center
+        radius = 0.0
+    else:
+        # else start at r=1
+        radius = radius_bump
+
+    if rotate is None:
+        rotate = np.pi / len(nlist)
+    first_theta = rotate
+    npos = {}
+    for nodes in nlist:
+        # Discard the last angle (endpoint=False) since 2*pi matches 0 radians
+        theta = (
+            np.linspace(0, 2 * np.pi, len(nodes), endpoint=False, dtype=np.float32)
+            + first_theta
+        )
+        pos = radius * np.column_stack([np.cos(theta), np.sin(theta)]) + center
+        npos.update(zip(nodes, pos))
+        radius += radius_bump
+        first_theta += rotate
+
+    return npos
+
+
+def bipartite_layout(
+    G, nodes, align="vertical", scale=1, center=None, aspect_ratio=4 / 3
+):
+    """Position nodes in two straight lines.
+
+    Parameters
+    ----------
+    G : NetworkX graph or list of nodes
+        A position will be assigned to every node in G.
+
+    nodes : list or container
+        Nodes in one node set of the bipartite graph.
+        This set will be placed on left or top.
+
+    align : string (default='vertical')
+        The alignment of nodes. Vertical or horizontal.
+
+    scale : number (default: 1)
+        Scale factor for positions.
+
+    center : array-like or None
+        Coordinate pair around which to center the layout.
+
+    aspect_ratio : number (default=4/3):
+        The ratio of the width to the height of the layout.
+
+    Returns
+    -------
+    pos : dict
+        A dictionary of positions keyed by node.
+
+    Examples
+    --------
+    >>> G = nx.bipartite.gnmk_random_graph(3, 5, 10, seed=123)
+    >>> top = nx.bipartite.sets(G)[0]
+    >>> pos = nx.bipartite_layout(G, top)
+
+    Notes
+    -----
+    This algorithm currently only works in two dimensions and does not
+    try to minimize edge crossings.
+
+    """
+
+    import numpy as np
+
+    if align not in ("vertical", "horizontal"):
+        msg = "align must be either vertical or horizontal."
+        raise ValueError(msg)
+
+    G, center = _process_params(G, center=center, dim=2)
+    if len(G) == 0:
+        return {}
+
+    height = 1
+    width = aspect_ratio * height
+    offset = (width / 2, height / 2)
+
+    top = dict.fromkeys(nodes)
+    bottom = [v for v in G if v not in top]
+    nodes = list(top) + bottom
+
+    left_xs = np.repeat(0, len(top))
+    right_xs = np.repeat(width, len(bottom))
+    left_ys = np.linspace(0, height, len(top))
+    right_ys = np.linspace(0, height, len(bottom))
+
+    top_pos = np.column_stack([left_xs, left_ys]) - offset
+    bottom_pos = np.column_stack([right_xs, right_ys]) - offset
+
+    pos = np.concatenate([top_pos, bottom_pos])
+    pos = rescale_layout(pos, scale=scale) + center
+    if align == "horizontal":
+        pos = pos[:, ::-1]  # swap x and y coords
+    pos = dict(zip(nodes, pos))
+    return pos
+
+
+@np_random_state(10)
+def spring_layout(
+    G,
+    k=None,
+    pos=None,
+    fixed=None,
+    iterations=50,
+    threshold=1e-4,
+    weight="weight",
+    scale=1,
+    center=None,
+    dim=2,
+    seed=None,
+):
+    """Position nodes using Fruchterman-Reingold force-directed algorithm.
+
+    The algorithm simulates a force-directed representation of the network
+    treating edges as springs holding nodes close, while treating nodes
+    as repelling objects, sometimes called an anti-gravity force.
+    Simulation continues until the positions are close to an equilibrium.
+
+    There are some hard-coded values: minimal distance between
+    nodes (0.01) and "temperature" of 0.1 to ensure nodes don't fly away.
+    During the simulation, `k` helps determine the distance between nodes,
+    though `scale` and `center` determine the size and place after
+    rescaling occurs at the end of the simulation.
+
+    Fixing some nodes doesn't allow them to move in the simulation.
+    It also turns off the rescaling feature at the simulation's end.
+    In addition, setting `scale` to `None` turns off rescaling.
+
+    Parameters
+    ----------
+    G : NetworkX graph or list of nodes
+        A position will be assigned to every node in G.
+
+    k : float (default=None)
+        Optimal distance between nodes.  If None the distance is set to
+        1/sqrt(n) where n is the number of nodes.  Increase this value
+        to move nodes farther apart.
+
+    pos : dict or None  optional (default=None)
+        Initial positions for nodes as a dictionary with node as keys
+        and values as a coordinate list or tuple.  If None, then use
+        random initial positions.
+
+    fixed : list or None  optional (default=None)
+        Nodes to keep fixed at initial position.
+        Nodes not in ``G.nodes`` are ignored.
+        ValueError raised if `fixed` specified and `pos` not.
+
+    iterations : int  optional (default=50)
+        Maximum number of iterations taken
+
+    threshold: float optional (default = 1e-4)
+        Threshold for relative error in node position changes.
+        The iteration stops if the error is below this threshold.
+
+    weight : string or None   optional (default='weight')
+        The edge attribute that holds the numerical value used for
+        the edge weight.  Larger means a stronger attractive force.
+        If None, then all edge weights are 1.
+
+    scale : number or None (default: 1)
+        Scale factor for positions. Not used unless `fixed is None`.
+        If scale is None, no rescaling is performed.
+
+    center : array-like or None
+        Coordinate pair around which to center the layout.
+        Not used unless `fixed is None`.
+
+    dim : int
+        Dimension of layout.
+
+    seed : int, RandomState instance or None  optional (default=None)
+        Used only for the initial positions in the algorithm.
+        Set the random state for deterministic node layouts.
+        If int, `seed` is the seed used by the random number generator,
+        if numpy.random.RandomState instance, `seed` is the random
+        number generator,
+        if None, the random number generator is the RandomState instance used
+        by numpy.random.
+
+    Returns
+    -------
+    pos : dict
+        A dictionary of positions keyed by node
+
+    Examples
+    --------
+    >>> G = nx.path_graph(4)
+    >>> pos = nx.spring_layout(G)
+
+    # The same using longer but equivalent function name
+    >>> pos = nx.fruchterman_reingold_layout(G)
+    """
+    import numpy as np
+
+    G, center = _process_params(G, center, dim)
+
+    if fixed is not None:
+        if pos is None:
+            raise ValueError("nodes are fixed without positions given")
+        for node in fixed:
+            if node not in pos:
+                raise ValueError("nodes are fixed without positions given")
+        nfixed = {node: i for i, node in enumerate(G)}
+        fixed = np.asarray([nfixed[node] for node in fixed if node in nfixed])
+
+    if pos is not None:
+        # Determine size of existing domain to adjust initial positions
+        dom_size = max(coord for pos_tup in pos.values() for coord in pos_tup)
+        if dom_size == 0:
+            dom_size = 1
+        pos_arr = seed.rand(len(G), dim) * dom_size + center
+
+        for i, n in enumerate(G):
+            if n in pos:
+                pos_arr[i] = np.asarray(pos[n])
+    else:
+        pos_arr = None
+        dom_size = 1
+
+    if len(G) == 0:
+        return {}
+    if len(G) == 1:
+        return {nx.utils.arbitrary_element(G.nodes()): center}
+
+    try:
+        # Sparse matrix
+        if len(G) < 500:  # sparse solver for large graphs
+            raise ValueError
+        A = nx.to_scipy_sparse_array(G, weight=weight, dtype="f")
+        if k is None and fixed is not None:
+            # We must adjust k by domain size for layouts not near 1x1
+            nnodes, _ = A.shape
+            k = dom_size / np.sqrt(nnodes)
+        pos = _sparse_fruchterman_reingold(
+            A, k, pos_arr, fixed, iterations, threshold, dim, seed
+        )
+    except ValueError:
+        A = nx.to_numpy_array(G, weight=weight)
+        if k is None and fixed is not None:
+            # We must adjust k by domain size for layouts not near 1x1
+            nnodes, _ = A.shape
+            k = dom_size / np.sqrt(nnodes)
+        pos = _fruchterman_reingold(
+            A, k, pos_arr, fixed, iterations, threshold, dim, seed
+        )
+    if fixed is None and scale is not None:
+        pos = rescale_layout(pos, scale=scale) + center
+    pos = dict(zip(G, pos))
+    return pos
+
+
+fruchterman_reingold_layout = spring_layout
+
+
+@np_random_state(7)
+def _fruchterman_reingold(
+    A, k=None, pos=None, fixed=None, iterations=50, threshold=1e-4, dim=2, seed=None
+):
+    # Position nodes in adjacency matrix A using Fruchterman-Reingold
+    # Entry point for NetworkX graph is fruchterman_reingold_layout()
+    import numpy as np
+
+    try:
+        nnodes, _ = A.shape
+    except AttributeError as err:
+        msg = "fruchterman_reingold() takes an adjacency matrix as input"
+        raise nx.NetworkXError(msg) from err
+
+    if pos is None:
+        # random initial positions
+        pos = np.asarray(seed.rand(nnodes, dim), dtype=A.dtype)
+    else:
+        # make sure positions are of same type as matrix
+        pos = pos.astype(A.dtype)
+
+    # optimal distance between nodes
+    if k is None:
+        k = np.sqrt(1.0 / nnodes)
+    # the initial "temperature"  is about .1 of domain area (=1x1)
+    # this is the largest step allowed in the dynamics.
+    # We need to calculate this in case our fixed positions force our domain
+    # to be much bigger than 1x1
+    t = max(max(pos.T[0]) - min(pos.T[0]), max(pos.T[1]) - min(pos.T[1])) * 0.1
+    # simple cooling scheme.
+    # linearly step down by dt on each iteration so last iteration is size dt.
+    dt = t / (iterations + 1)
+    delta = np.zeros((pos.shape[0], pos.shape[0], pos.shape[1]), dtype=A.dtype)
+    # the inscrutable (but fast) version
+    # this is still O(V^2)
+    # could use multilevel methods to speed this up significantly
+    for iteration in range(iterations):
+        # matrix of difference between points
+        delta = pos[:, np.newaxis, :] - pos[np.newaxis, :, :]
+        # distance between points
+        distance = np.linalg.norm(delta, axis=-1)
+        # enforce minimum distance of 0.01
+        np.clip(distance, 0.01, None, out=distance)
+        # displacement "force"
+        displacement = np.einsum(
+            "ijk,ij->ik", delta, (k * k / distance**2 - A * distance / k)
+        )
+        # update positions
+        length = np.linalg.norm(displacement, axis=-1)
+        length = np.where(length < 0.01, 0.1, length)
+        delta_pos = np.einsum("ij,i->ij", displacement, t / length)
+        if fixed is not None:
+            # don't change positions of fixed nodes
+            delta_pos[fixed] = 0.0
+        pos += delta_pos
+        # cool temperature
+        t -= dt
+        if (np.linalg.norm(delta_pos) / nnodes) < threshold:
+            break
+    return pos
+
+
+@np_random_state(7)
+def _sparse_fruchterman_reingold(
+    A, k=None, pos=None, fixed=None, iterations=50, threshold=1e-4, dim=2, seed=None
+):
+    # Position nodes in adjacency matrix A using Fruchterman-Reingold
+    # Entry point for NetworkX graph is fruchterman_reingold_layout()
+    # Sparse version
+    import numpy as np
+    import scipy as sp
+
+    try:
+        nnodes, _ = A.shape
+    except AttributeError as err:
+        msg = "fruchterman_reingold() takes an adjacency matrix as input"
+        raise nx.NetworkXError(msg) from err
+    # make sure we have a LIst of Lists representation
+    try:
+        A = A.tolil()
+    except AttributeError:
+        A = (sp.sparse.coo_array(A)).tolil()
+
+    if pos is None:
+        # random initial positions
+        pos = np.asarray(seed.rand(nnodes, dim), dtype=A.dtype)
+    else:
+        # make sure positions are of same type as matrix
+        pos = pos.astype(A.dtype)
+
+    # no fixed nodes
+    if fixed is None:
+        fixed = []
+
+    # optimal distance between nodes
+    if k is None:
+        k = np.sqrt(1.0 / nnodes)
+    # the initial "temperature"  is about .1 of domain area (=1x1)
+    # this is the largest step allowed in the dynamics.
+    t = max(max(pos.T[0]) - min(pos.T[0]), max(pos.T[1]) - min(pos.T[1])) * 0.1
+    # simple cooling scheme.
+    # linearly step down by dt on each iteration so last iteration is size dt.
+    dt = t / (iterations + 1)
+
+    displacement = np.zeros((dim, nnodes))
+    for iteration in range(iterations):
+        displacement *= 0
+        # loop over rows
+        for i in range(A.shape[0]):
+            if i in fixed:
+                continue
+            # difference between this row's node position and all others
+            delta = (pos[i] - pos).T
+            # distance between points
+            distance = np.sqrt((delta**2).sum(axis=0))
+            # enforce minimum distance of 0.01
+            distance = np.where(distance < 0.01, 0.01, distance)
+            # the adjacency matrix row
+            Ai = A.getrowview(i).toarray()  # TODO: revisit w/ sparse 1D container
+            # displacement "force"
+            displacement[:, i] += (
+                delta * (k * k / distance**2 - Ai * distance / k)
+            ).sum(axis=1)
+        # update positions
+        length = np.sqrt((displacement**2).sum(axis=0))
+        length = np.where(length < 0.01, 0.1, length)
+        delta_pos = (displacement * t / length).T
+        pos += delta_pos
+        # cool temperature
+        t -= dt
+        if (np.linalg.norm(delta_pos) / nnodes) < threshold:
+            break
+    return pos
+
+
+def kamada_kawai_layout(
+    G, dist=None, pos=None, weight="weight", scale=1, center=None, dim=2
+):
+    """Position nodes using Kamada-Kawai path-length cost-function.
+
+    Parameters
+    ----------
+    G : NetworkX graph or list of nodes
+        A position will be assigned to every node in G.
+
+    dist : dict (default=None)
+        A two-level dictionary of optimal distances between nodes,
+        indexed by source and destination node.
+        If None, the distance is computed using shortest_path_length().
+
+    pos : dict or None  optional (default=None)
+        Initial positions for nodes as a dictionary with node as keys
+        and values as a coordinate list or tuple.  If None, then use
+        circular_layout() for dim >= 2 and a linear layout for dim == 1.
+
+    weight : string or None   optional (default='weight')
+        The edge attribute that holds the numerical value used for
+        the edge weight.  If None, then all edge weights are 1.
+
+    scale : number (default: 1)
+        Scale factor for positions.
+
+    center : array-like or None
+        Coordinate pair around which to center the layout.
+
+    dim : int
+        Dimension of layout.
+
+    Returns
+    -------
+    pos : dict
+        A dictionary of positions keyed by node
+
+    Examples
+    --------
+    >>> G = nx.path_graph(4)
+    >>> pos = nx.kamada_kawai_layout(G)
+    """
+    import numpy as np
+
+    G, center = _process_params(G, center, dim)
+    nNodes = len(G)
+    if nNodes == 0:
+        return {}
+
+    if dist is None:
+        dist = dict(nx.shortest_path_length(G, weight=weight))
+    dist_mtx = 1e6 * np.ones((nNodes, nNodes))
+    for row, nr in enumerate(G):
+        if nr not in dist:
+            continue
+        rdist = dist[nr]
+        for col, nc in enumerate(G):
+            if nc not in rdist:
+                continue
+            dist_mtx[row][col] = rdist[nc]
+
+    if pos is None:
+        if dim >= 3:
+            pos = random_layout(G, dim=dim)
+        elif dim == 2:
+            pos = circular_layout(G, dim=dim)
+        else:
+            pos = dict(zip(G, np.linspace(0, 1, len(G))))
+    pos_arr = np.array([pos[n] for n in G])
+
+    pos = _kamada_kawai_solve(dist_mtx, pos_arr, dim)
+
+    pos = rescale_layout(pos, scale=scale) + center
+    return dict(zip(G, pos))
+
+
+def _kamada_kawai_solve(dist_mtx, pos_arr, dim):
+    # Anneal node locations based on the Kamada-Kawai cost-function,
+    # using the supplied matrix of preferred inter-node distances,
+    # and starting locations.
+
+    import numpy as np
+    import scipy as sp
+
+    meanwt = 1e-3
+    costargs = (np, 1 / (dist_mtx + np.eye(dist_mtx.shape[0]) * 1e-3), meanwt, dim)
+
+    optresult = sp.optimize.minimize(
+        _kamada_kawai_costfn,
+        pos_arr.ravel(),
+        method="L-BFGS-B",
+        args=costargs,
+        jac=True,
+    )
+
+    return optresult.x.reshape((-1, dim))
+
+
+def _kamada_kawai_costfn(pos_vec, np, invdist, meanweight, dim):
+    # Cost-function and gradient for Kamada-Kawai layout algorithm
+    nNodes = invdist.shape[0]
+    pos_arr = pos_vec.reshape((nNodes, dim))
+
+    delta = pos_arr[:, np.newaxis, :] - pos_arr[np.newaxis, :, :]
+    nodesep = np.linalg.norm(delta, axis=-1)
+    direction = np.einsum("ijk,ij->ijk", delta, 1 / (nodesep + np.eye(nNodes) * 1e-3))
+
+    offset = nodesep * invdist - 1.0
+    offset[np.diag_indices(nNodes)] = 0
+
+    cost = 0.5 * np.sum(offset**2)
+    grad = np.einsum("ij,ij,ijk->ik", invdist, offset, direction) - np.einsum(
+        "ij,ij,ijk->jk", invdist, offset, direction
+    )
+
+    # Additional parabolic term to encourage mean position to be near origin:
+    sumpos = np.sum(pos_arr, axis=0)
+    cost += 0.5 * meanweight * np.sum(sumpos**2)
+    grad += meanweight * sumpos
+
+    return (cost, grad.ravel())
+
+
+def spectral_layout(G, weight="weight", scale=1, center=None, dim=2):
+    """Position nodes using the eigenvectors of the graph Laplacian.
+
+    Using the unnormalized Laplacian, the layout shows possible clusters of
+    nodes which are an approximation of the ratio cut. If dim is the number of
+    dimensions then the positions are the entries of the dim eigenvectors
+    corresponding to the ascending eigenvalues starting from the second one.
+
+    Parameters
+    ----------
+    G : NetworkX graph or list of nodes
+        A position will be assigned to every node in G.
+
+    weight : string or None   optional (default='weight')
+        The edge attribute that holds the numerical value used for
+        the edge weight.  If None, then all edge weights are 1.
+
+    scale : number (default: 1)
+        Scale factor for positions.
+
+    center : array-like or None
+        Coordinate pair around which to center the layout.
+
+    dim : int
+        Dimension of layout.
+
+    Returns
+    -------
+    pos : dict
+        A dictionary of positions keyed by node
+
+    Examples
+    --------
+    >>> G = nx.path_graph(4)
+    >>> pos = nx.spectral_layout(G)
+
+    Notes
+    -----
+    Directed graphs will be considered as undirected graphs when
+    positioning the nodes.
+
+    For larger graphs (>500 nodes) this will use the SciPy sparse
+    eigenvalue solver (ARPACK).
+    """
+    # handle some special cases that break the eigensolvers
+    import numpy as np
+
+    G, center = _process_params(G, center, dim)
+
+    if len(G) <= 2:
+        if len(G) == 0:
+            pos = np.array([])
+        elif len(G) == 1:
+            pos = np.array([center])
+        else:
+            pos = np.array([np.zeros(dim), np.array(center) * 2.0])
+        return dict(zip(G, pos))
+    try:
+        # Sparse matrix
+        if len(G) < 500:  # dense solver is faster for small graphs
+            raise ValueError
+        A = nx.to_scipy_sparse_array(G, weight=weight, dtype="d")
+        # Symmetrize directed graphs
+        if G.is_directed():
+            A = A + np.transpose(A)
+        pos = _sparse_spectral(A, dim)
+    except (ImportError, ValueError):
+        # Dense matrix
+        A = nx.to_numpy_array(G, weight=weight)
+        # Symmetrize directed graphs
+        if G.is_directed():
+            A += A.T
+        pos = _spectral(A, dim)
+
+    pos = rescale_layout(pos, scale=scale) + center
+    pos = dict(zip(G, pos))
+    return pos
+
+
+def _spectral(A, dim=2):
+    # Input adjacency matrix A
+    # Uses dense eigenvalue solver from numpy
+    import numpy as np
+
+    try:
+        nnodes, _ = A.shape
+    except AttributeError as err:
+        msg = "spectral() takes an adjacency matrix as input"
+        raise nx.NetworkXError(msg) from err
+
+    # form Laplacian matrix where D is diagonal of degrees
+    D = np.identity(nnodes, dtype=A.dtype) * np.sum(A, axis=1)
+    L = D - A
+
+    eigenvalues, eigenvectors = np.linalg.eig(L)
+    # sort and keep smallest nonzero
+    index = np.argsort(eigenvalues)[1 : dim + 1]  # 0 index is zero eigenvalue
+    return np.real(eigenvectors[:, index])
+
+
+def _sparse_spectral(A, dim=2):
+    # Input adjacency matrix A
+    # Uses sparse eigenvalue solver from scipy
+    # Could use multilevel methods here, see Koren "On spectral graph drawing"
+    import numpy as np
+    import scipy as sp
+
+    try:
+        nnodes, _ = A.shape
+    except AttributeError as err:
+        msg = "sparse_spectral() takes an adjacency matrix as input"
+        raise nx.NetworkXError(msg) from err
+
+    # form Laplacian matrix
+    # TODO: Rm csr_array wrapper in favor of spdiags array constructor when available
+    D = sp.sparse.csr_array(sp.sparse.spdiags(A.sum(axis=1), 0, nnodes, nnodes))
+    L = D - A
+
+    k = dim + 1
+    # number of Lanczos vectors for ARPACK solver.What is the right scaling?
+    ncv = max(2 * k + 1, int(np.sqrt(nnodes)))
+    # return smallest k eigenvalues and eigenvectors
+    eigenvalues, eigenvectors = sp.sparse.linalg.eigsh(L, k, which="SM", ncv=ncv)
+    index = np.argsort(eigenvalues)[1:k]  # 0 index is zero eigenvalue
+    return np.real(eigenvectors[:, index])
+
+
+def planar_layout(G, scale=1, center=None, dim=2):
+    """Position nodes without edge intersections.
+
+    Parameters
+    ----------
+    G : NetworkX graph or list of nodes
+        A position will be assigned to every node in G. If G is of type
+        nx.PlanarEmbedding, the positions are selected accordingly.
+
+    scale : number (default: 1)
+        Scale factor for positions.
+
+    center : array-like or None
+        Coordinate pair around which to center the layout.
+
+    dim : int
+        Dimension of layout.
+
+    Returns
+    -------
+    pos : dict
+        A dictionary of positions keyed by node
+
+    Raises
+    ------
+    NetworkXException
+        If G is not planar
+
+    Examples
+    --------
+    >>> G = nx.path_graph(4)
+    >>> pos = nx.planar_layout(G)
+    """
+    import numpy as np
+
+    if dim != 2:
+        raise ValueError("can only handle 2 dimensions")
+
+    G, center = _process_params(G, center, dim)
+
+    if len(G) == 0:
+        return {}
+
+    if isinstance(G, nx.PlanarEmbedding):
+        embedding = G
+    else:
+        is_planar, embedding = nx.check_planarity(G)
+        if not is_planar:
+            raise nx.NetworkXException("G is not planar.")
+    pos = nx.combinatorial_embedding_to_pos(embedding)
+    node_list = list(embedding)
+    pos = np.vstack([pos[x] for x in node_list])
+    pos = pos.astype(np.float64)
+    pos = rescale_layout(pos, scale=scale) + center
+    return dict(zip(node_list, pos))
+
+
+def spiral_layout(G, scale=1, center=None, dim=2, resolution=0.35, equidistant=False):
+    """Position nodes in a spiral layout.
+
+    Parameters
+    ----------
+    G : NetworkX graph or list of nodes
+        A position will be assigned to every node in G.
+    scale : number (default: 1)
+        Scale factor for positions.
+    center : array-like or None
+        Coordinate pair around which to center the layout.
+    dim : int, default=2
+        Dimension of layout, currently only dim=2 is supported.
+        Other dimension values result in a ValueError.
+    resolution : float, default=0.35
+        The compactness of the spiral layout returned.
+        Lower values result in more compressed spiral layouts.
+    equidistant : bool, default=False
+        If True, nodes will be positioned equidistant from each other
+        by decreasing angle further from center.
+        If False, nodes will be positioned at equal angles
+        from each other by increasing separation further from center.
+
+    Returns
+    -------
+    pos : dict
+        A dictionary of positions keyed by node
+
+    Raises
+    ------
+    ValueError
+        If dim != 2
+
+    Examples
+    --------
+    >>> G = nx.path_graph(4)
+    >>> pos = nx.spiral_layout(G)
+    >>> nx.draw(G, pos=pos)
+
+    Notes
+    -----
+    This algorithm currently only works in two dimensions.
+
+    """
+    import numpy as np
+
+    if dim != 2:
+        raise ValueError("can only handle 2 dimensions")
+
+    G, center = _process_params(G, center, dim)
+
+    if len(G) == 0:
+        return {}
+    if len(G) == 1:
+        return {nx.utils.arbitrary_element(G): center}
+
+    pos = []
+    if equidistant:
+        chord = 1
+        step = 0.5
+        theta = resolution
+        theta += chord / (step * theta)
+        for _ in range(len(G)):
+            r = step * theta
+            theta += chord / r
+            pos.append([np.cos(theta) * r, np.sin(theta) * r])
+
+    else:
+        dist = np.arange(len(G), dtype=float)
+        angle = resolution * dist
+        pos = np.transpose(dist * np.array([np.cos(angle), np.sin(angle)]))
+
+    pos = rescale_layout(np.array(pos), scale=scale) + center
+
+    pos = dict(zip(G, pos))
+
+    return pos
+
+
+def multipartite_layout(G, subset_key="subset", align="vertical", scale=1, center=None):
+    """Position nodes in layers of straight lines.
+
+    Parameters
+    ----------
+    G : NetworkX graph or list of nodes
+        A position will be assigned to every node in G.
+
+    subset_key : string or dict (default='subset')
+        If a string, the key of node data in G that holds the node subset.
+        If a dict, keyed by layer number to the nodes in that layer/subset.
+
+    align : string (default='vertical')
+        The alignment of nodes. Vertical or horizontal.
+
+    scale : number (default: 1)
+        Scale factor for positions.
+
+    center : array-like or None
+        Coordinate pair around which to center the layout.
+
+    Returns
+    -------
+    pos : dict
+        A dictionary of positions keyed by node.
+
+    Examples
+    --------
+    >>> G = nx.complete_multipartite_graph(28, 16, 10)
+    >>> pos = nx.multipartite_layout(G)
+
+    or use a dict to provide the layers of the layout
+
+    >>> G = nx.Graph([(0, 1), (1, 2), (1, 3), (3, 4)])
+    >>> layers = {"a": [0], "b": [1], "c": [2, 3], "d": [4]}
+    >>> pos = nx.multipartite_layout(G, subset_key=layers)
+
+    Notes
+    -----
+    This algorithm currently only works in two dimensions and does not
+    try to minimize edge crossings.
+
+    Network does not need to be a complete multipartite graph. As long as nodes
+    have subset_key data, they will be placed in the corresponding layers.
+
+    """
+    import numpy as np
+
+    if align not in ("vertical", "horizontal"):
+        msg = "align must be either vertical or horizontal."
+        raise ValueError(msg)
+
+    G, center = _process_params(G, center=center, dim=2)
+    if len(G) == 0:
+        return {}
+
+    try:
+        # check if subset_key is dict-like
+        if len(G) != sum(len(nodes) for nodes in subset_key.values()):
+            raise nx.NetworkXError(
+                "all nodes must be in one subset of `subset_key` dict"
+            )
+    except AttributeError:
+        # subset_key is not a dict, hence a string
+        node_to_subset = nx.get_node_attributes(G, subset_key)
+        if len(node_to_subset) != len(G):
+            raise nx.NetworkXError(
+                f"all nodes need a subset_key attribute: {subset_key}"
+            )
+        subset_key = nx.utils.groups(node_to_subset)
+
+    # Sort by layer, if possible
+    try:
+        layers = dict(sorted(subset_key.items()))
+    except TypeError:
+        layers = subset_key
+
+    pos = None
+    nodes = []
+    width = len(layers)
+    for i, layer in enumerate(layers.values()):
+        height = len(layer)
+        xs = np.repeat(i, height)
+        ys = np.arange(0, height, dtype=float)
+        offset = ((width - 1) / 2, (height - 1) / 2)
+        layer_pos = np.column_stack([xs, ys]) - offset
+        if pos is None:
+            pos = layer_pos
+        else:
+            pos = np.concatenate([pos, layer_pos])
+        nodes.extend(layer)
+    pos = rescale_layout(pos, scale=scale) + center
+    if align == "horizontal":
+        pos = pos[:, ::-1]  # swap x and y coords
+    pos = dict(zip(nodes, pos))
+    return pos
+
+
+@np_random_state("seed")
+def arf_layout(
+    G,
+    pos=None,
+    scaling=1,
+    a=1.1,
+    etol=1e-6,
+    dt=1e-3,
+    max_iter=1000,
+    *,
+    seed=None,
+):
+    """Arf layout for networkx
+
+    The attractive and repulsive forces (arf) layout [1]
+    improves the spring layout in three ways. First, it
+    prevents congestion of highly connected nodes due to
+    strong forcing between nodes. Second, it utilizes the
+    layout space more effectively by preventing large gaps
+    that spring layout tends to create. Lastly, the arf
+    layout represents symmetries in the layout better than
+    the default spring layout.
+
+    Parameters
+    ----------
+    G : nx.Graph or nx.DiGraph
+        Networkx graph.
+    pos : dict
+        Initial  position of  the nodes.  If set  to None  a
+        random layout will be used.
+    scaling : float
+        Scales the radius of the circular layout space.
+    a : float
+        Strength of springs between connected nodes. Should be larger than 1. The greater a, the clearer the separation ofunconnected sub clusters.
+    etol : float
+        Gradient sum of spring forces must be larger than `etol` before successful termination.
+    dt : float
+        Time step for force differential equation simulations.
+    max_iter : int
+        Max iterations before termination of the algorithm.
+    seed : int, RandomState instance or None  optional (default=None)
+        Set the random state for deterministic node layouts.
+        If int, `seed` is the seed used by the random number generator,
+        if numpy.random.RandomState instance, `seed` is the random
+        number generator,
+        if None, the random number generator is the RandomState instance used
+        by numpy.random.
+
+    References
+    .. [1] "Self-Organization Applied to Dynamic Network Layout", M. Geipel,
+            International Journal of Modern Physics C, 2007, Vol 18, No 10, pp. 1537-1549.
+            https://doi.org/10.1142/S0129183107011558 https://arxiv.org/abs/0704.1748
+
+    Returns
+    -------
+    pos : dict
+        A dictionary of positions keyed by node.
+
+    Examples
+    --------
+    >>> G = nx.grid_graph((5, 5))
+    >>> pos = nx.arf_layout(G)
+
+    """
+    import warnings
+
+    import numpy as np
+
+    if a <= 1:
+        msg = "The parameter a should be larger than 1"
+        raise ValueError(msg)
+
+    pos_tmp = nx.random_layout(G, seed=seed)
+    if pos is None:
+        pos = pos_tmp
+    else:
+        for node in G.nodes():
+            if node not in pos:
+                pos[node] = pos_tmp[node].copy()
+
+    # Initialize spring constant matrix
+    N = len(G)
+    # No nodes no computation
+    if N == 0:
+        return pos
+
+    # init force of springs
+    K = np.ones((N, N)) - np.eye(N)
+    node_order = {node: i for i, node in enumerate(G)}
+    for x, y in G.edges():
+        if x != y:
+            idx, jdx = (node_order[i] for i in (x, y))
+            K[idx, jdx] = a
+
+    # vectorize values
+    p = np.asarray(list(pos.values()))
+
+    # equation 10 in [1]
+    rho = scaling * np.sqrt(N)
+
+    # looping variables
+    error = etol + 1
+    n_iter = 0
+    while error > etol:
+        diff = p[:, np.newaxis] - p[np.newaxis]
+        A = np.linalg.norm(diff, axis=-1)[..., np.newaxis]
+        # attraction_force - repulsions force
+        # suppress nans due to division; caused by diagonal set to zero.
+        # Does not affect the computation due to nansum
+        with warnings.catch_warnings():
+            warnings.simplefilter("ignore")
+            change = K[..., np.newaxis] * diff - rho / A * diff
+        change = np.nansum(change, axis=0)
+        p += change * dt
+
+        error = np.linalg.norm(change, axis=-1).sum()
+        if n_iter > max_iter:
+            break
+        n_iter += 1
+    return dict(zip(G.nodes(), p))
+
+
+@np_random_state("seed")
+def forceatlas2_layout(
+    G,
+    pos=None,
+    *,
+    max_iter=100,
+    jitter_tolerance=1.0,
+    scaling_ratio=2.0,
+    gravity=1.0,
+    distributed_action=False,
+    strong_gravity=False,
+    node_mass=None,
+    node_size=None,
+    weight=None,
+    dissuade_hubs=False,
+    linlog=False,
+    seed=None,
+    dim=2,
+):
+    """Position nodes using the ForceAtlas2 force-directed layout algorithm.
+
+    This function applies the ForceAtlas2 layout algorithm [1]_ to a NetworkX graph,
+    positioning the nodes in a way that visually represents the structure of the graph.
+    The algorithm uses physical simulation to minimize the energy of the system,
+    resulting in a more readable layout.
+
+    Parameters
+    ----------
+    G : nx.Graph
+        A NetworkX graph to be laid out.
+    pos : dict or None, optional
+        Initial positions of the nodes. If None, random initial positions are used.
+    max_iter : int (default: 100)
+        Number of iterations for the layout optimization.
+    jitter_tolerance : float (default: 1.0)
+        Controls the tolerance for adjusting the speed of layout generation.
+    scaling_ratio : float (default: 2.0)
+        Determines the scaling of attraction and repulsion forces.
+    distributed_attraction : bool (default: False)
+        Distributes the attraction force evenly among nodes.
+    strong_gravity : bool (default: False)
+        Applies a strong gravitational pull towards the center.
+    node_mass : dict or None, optional
+        Maps nodes to their masses, influencing the attraction to other nodes.
+    node_size : dict or None, optional
+        Maps nodes to their sizes, preventing crowding by creating a halo effect.
+    dissuade_hubs : bool (default: False)
+        Prevents the clustering of hub nodes.
+    linlog : bool (default: False)
+        Uses logarithmic attraction instead of linear.
+    seed : int, RandomState instance or None  optional (default=None)
+        Used only for the initial positions in the algorithm.
+        Set the random state for deterministic node layouts.
+        If int, `seed` is the seed used by the random number generator,
+        if numpy.random.RandomState instance, `seed` is the random
+        number generator,
+        if None, the random number generator is the RandomState instance used
+        by numpy.random.
+    dim : int (default: 2)
+        Sets the dimensions for the layout. Ignored if `pos` is provided.
+
+    Examples
+    --------
+    >>> import networkx as nx
+    >>> G = nx.florentine_families_graph()
+    >>> pos = nx.forceatlas2_layout(G)
+    >>> nx.draw(G, pos=pos)
+
+    References
+    ----------
+    .. [1] Jacomy, M., Venturini, T., Heymann, S., & Bastian, M. (2014).
+           ForceAtlas2, a continuous graph layout algorithm for handy network
+           visualization designed for the Gephi software. PloS one, 9(6), e98679.
+           https://doi.org/10.1371/journal.pone.0098679
+    """
+    import numpy as np
+
+    if len(G) == 0:
+        return {}
+    # parse optional pos positions
+    if pos is None:
+        pos = nx.random_layout(G, dim=dim, seed=seed)
+        pos_arr = np.array(list(pos.values()))
+    else:
+        # set default node interval within the initial pos values
+        pos_init = np.array(list(pos.values()))
+        max_pos = pos_init.max(axis=0)
+        min_pos = pos_init.min(axis=0)
+        dim = max_pos.size
+        pos_arr = min_pos + seed.rand(len(G), dim) * (max_pos - min_pos)
+        for idx, node in enumerate(G):
+            if node in pos:
+                pos_arr[idx] = pos[node].copy()
+
+    mass = np.zeros(len(G))
+    size = np.zeros(len(G))
+
+    # Only adjust for size when the users specifies size other than default (1)
+    adjust_sizes = False
+    if node_size is None:
+        node_size = {}
+    else:
+        adjust_sizes = True
+
+    if node_mass is None:
+        node_mass = {}
+
+    for idx, node in enumerate(G):
+        mass[idx] = node_mass.get(node, G.degree(node) + 1)
+        size[idx] = node_size.get(node, 1)
+
+    n = len(G)
+    gravities = np.zeros((n, dim))
+    attraction = np.zeros((n, dim))
+    repulsion = np.zeros((n, dim))
+    A = nx.to_numpy_array(G, weight=weight)
+
+    def estimate_factor(n, swing, traction, speed, speed_efficiency, jitter_tolerance):
+        """Computes the scaling factor for the force in the ForceAtlas2 layout algorithm.
+
+        This   helper  function   adjusts   the  speed   and
+        efficiency  of the  layout generation  based on  the
+        current state of  the system, such as  the number of
+        nodes, current swing, and traction forces.
+
+        Parameters
+        ----------
+        n : int
+            Number of nodes in the graph.
+        swing : float
+            The current swing, representing the oscillation of the nodes.
+        traction : float
+            The current traction force, representing the attraction between nodes.
+        speed : float
+            The current speed of the layout generation.
+        speed_efficiency : float
+            The efficiency of the current speed, influencing how fast the layout converges.
+        jitter_tolerance : float
+            The tolerance for jitter, affecting how much speed adjustment is allowed.
+
+        Returns
+        -------
+        tuple
+            A tuple containing the updated speed and speed efficiency.
+
+        Notes
+        -----
+        This function is a part of the ForceAtlas2 layout algorithm and is used to dynamically adjust the
+        layout parameters to achieve an optimal and stable visualization.
+
+        """
+        import numpy as np
+
+        # estimate jitter
+        opt_jitter = 0.05 * np.sqrt(n)
+        min_jitter = np.sqrt(opt_jitter)
+        max_jitter = 10
+        min_speed_efficiency = 0.05
+
+        other = min(max_jitter, opt_jitter * traction / n**2)
+        jitter = jitter_tolerance * max(min_jitter, other)
+
+        if swing / traction > 2.0:
+            if speed_efficiency > min_speed_efficiency:
+                speed_efficiency *= 0.5
+            jitter = max(jitter, jitter_tolerance)
+        if swing == 0:
+            target_speed = np.inf
+        else:
+            target_speed = jitter * speed_efficiency * traction / swing
+
+        if swing > jitter * traction:
+            if speed_efficiency > min_speed_efficiency:
+                speed_efficiency *= 0.7
+        elif speed < 1000:
+            speed_efficiency *= 1.3
+
+        max_rise = 0.5
+        speed = speed + min(target_speed - speed, max_rise * speed)
+        return speed, speed_efficiency
+
+    speed = 1
+    speed_efficiency = 1
+    swing = 1
+    traction = 1
+    for _ in range(max_iter):
+        # compute pairwise difference
+        diff = pos_arr[:, None] - pos_arr[None]
+        # compute pairwise distance
+        distance = np.linalg.norm(diff, axis=-1)
+
+        # linear attraction
+        if linlog:
+            attraction = -np.log(1 + distance) / distance
+            np.fill_diagonal(attraction, 0)
+            attraction = np.einsum("ij, ij -> ij", attraction, A)
+            attraction = np.einsum("ijk, ij -> ik", diff, attraction)
+
+        else:
+            attraction = -np.einsum("ijk, ij -> ik", diff, A)
+
+        if distributed_action:
+            attraction /= mass[:, None]
+
+        # repulsion
+        tmp = mass[:, None] @ mass[None]
+        if adjust_sizes:
+            distance += -size[:, None] - size[None]
+
+        d2 = distance**2
+        # remove self-interaction
+        np.fill_diagonal(tmp, 0)
+        np.fill_diagonal(d2, 1)
+        factor = (tmp / d2) * scaling_ratio
+        repulsion = np.einsum("ijk, ij -> ik", diff, factor)
+
+        # gravity
+        gravities = (
+            -gravity
+            * mass[:, None]
+            * pos_arr
+            / np.linalg.norm(pos_arr, axis=-1)[:, None]
+        )
+
+        if strong_gravity:
+            gravities *= np.linalg.norm(pos_arr, axis=-1)[:, None]
+        # total forces
+        update = attraction + repulsion + gravities
+
+        # compute total swing and traction
+        swing += (mass * np.linalg.norm(pos_arr - update, axis=-1)).sum()
+        traction += (0.5 * mass * np.linalg.norm(pos_arr + update, axis=-1)).sum()
+
+        speed, speed_efficiency = estimate_factor(
+            n,
+            swing,
+            traction,
+            speed,
+            speed_efficiency,
+            jitter_tolerance,
+        )
+
+        # update pos
+        if adjust_sizes:
+            swinging = mass * np.linalg.norm(update, axis=-1)
+            factor = 0.1 * speed / (1 + np.sqrt(speed * swinging))
+            df = np.linalg.norm(update, axis=-1)
+            factor = np.minimum(factor * df, 10.0 * np.ones(df.shape)) / df
+        else:
+            swinging = mass * np.linalg.norm(update, axis=-1)
+            factor = speed / (1 + np.sqrt(speed * swinging))
+
+        pos_arr += update * factor[:, None]
+        if abs((update * factor[:, None]).sum()) < 1e-10:
+            break
+
+    return dict(zip(G, pos_arr))
+
+
+def rescale_layout(pos, scale=1):
+    """Returns scaled position array to (-scale, scale) in all axes.
+
+    The function acts on NumPy arrays which hold position information.
+    Each position is one row of the array. The dimension of the space
+    equals the number of columns. Each coordinate in one column.
+
+    To rescale, the mean (center) is subtracted from each axis separately.
+    Then all values are scaled so that the largest magnitude value
+    from all axes equals `scale` (thus, the aspect ratio is preserved).
+    The resulting NumPy Array is returned (order of rows unchanged).
+
+    Parameters
+    ----------
+    pos : numpy array
+        positions to be scaled. Each row is a position.
+
+    scale : number (default: 1)
+        The size of the resulting extent in all directions.
+
+    Returns
+    -------
+    pos : numpy array
+        scaled positions. Each row is a position.
+
+    See Also
+    --------
+    rescale_layout_dict
+    """
+    import numpy as np
+
+    # Find max length over all dimensions
+    pos -= pos.mean(axis=0)
+    lim = np.abs(pos).max()  # max coordinate for all axes
+    # rescale to (-scale, scale) in all directions, preserves aspect
+    if lim > 0:
+        pos *= scale / lim
+    return pos
+
+
+def rescale_layout_dict(pos, scale=1):
+    """Return a dictionary of scaled positions keyed by node
+
+    Parameters
+    ----------
+    pos : A dictionary of positions keyed by node
+
+    scale : number (default: 1)
+        The size of the resulting extent in all directions.
+
+    Returns
+    -------
+    pos : A dictionary of positions keyed by node
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> pos = {0: np.array((0, 0)), 1: np.array((1, 1)), 2: np.array((0.5, 0.5))}
+    >>> nx.rescale_layout_dict(pos)
+    {0: array([-1., -1.]), 1: array([1., 1.]), 2: array([0., 0.])}
+
+    >>> pos = {0: np.array((0, 0)), 1: np.array((-1, 1)), 2: np.array((-0.5, 0.5))}
+    >>> nx.rescale_layout_dict(pos, scale=2)
+    {0: array([ 2., -2.]), 1: array([-2.,  2.]), 2: array([0., 0.])}
+
+    See Also
+    --------
+    rescale_layout
+    """
+    import numpy as np
+
+    if not pos:  # empty_graph
+        return {}
+    pos_v = np.array(list(pos.values()))
+    pos_v = rescale_layout(pos_v, scale=scale)
+    return dict(zip(pos, pos_v))
+
+
+def bfs_layout(G, start, *, align="vertical", scale=1, center=None):
+    """Position nodes according to breadth-first search algorithm.
+
+    Parameters
+    ----------
+    G : NetworkX graph
+        A position will be assigned to every node in G.
+
+    start : node in `G`
+        Starting node for bfs
+
+    center : array-like or None
+        Coordinate pair around which to center the layout.
+
+    Returns
+    -------
+    pos : dict
+        A dictionary of positions keyed by node.
+
+    Examples
+    --------
+    >>> G = nx.path_graph(4)
+    >>> pos = nx.bfs_layout(G, 0)
+
+    Notes
+    -----
+    This algorithm currently only works in two dimensions and does not
+    try to minimize edge crossings.
+
+    """
+    G, center = _process_params(G, center, 2)
+
+    # Compute layers with BFS
+    layers = dict(enumerate(nx.bfs_layers(G, start)))
+
+    if len(G) != sum(len(nodes) for nodes in layers.values()):
+        raise nx.NetworkXError(
+            "bfs_layout didn't include all nodes. Perhaps use input graph:\n"
+            "        G.subgraph(nx.node_connected_component(G, start))"
+        )
+
+    # Compute node positions with multipartite_layout
+    return multipartite_layout(
+        G, subset_key=layers, align=align, scale=scale, center=center
+    )

wemm/lib/python3.10/site-packages/networkx/drawing/nx_pydot.py

@@ -0,0 +1,352 @@
+"""
+*****
+Pydot
+*****
+
+Import and export NetworkX graphs in Graphviz dot format using pydot.
+
+Either this module or nx_agraph can be used to interface with graphviz.
+
+Examples
+--------
+>>> G = nx.complete_graph(5)
+>>> PG = nx.nx_pydot.to_pydot(G)
+>>> H = nx.nx_pydot.from_pydot(PG)
+
+See Also
+--------
+ - pydot:         https://github.com/erocarrera/pydot
+ - Graphviz:      https://www.graphviz.org
+ - DOT Language:  http://www.graphviz.org/doc/info/lang.html
+"""
+
+from locale import getpreferredencoding
+
+import networkx as nx
+from networkx.utils import open_file
+
+__all__ = [
+    "write_dot",
+    "read_dot",
+    "graphviz_layout",
+    "pydot_layout",
+    "to_pydot",
+    "from_pydot",
+]
+
+
+@open_file(1, mode="w")
+def write_dot(G, path):
+    """Write NetworkX graph G to Graphviz dot format on path.
+
+    Path can be a string or a file handle.
+    """
+    P = to_pydot(G)
+    path.write(P.to_string())
+    return
+
+
+@open_file(0, mode="r")
+@nx._dispatchable(name="pydot_read_dot", graphs=None, returns_graph=True)
+def read_dot(path):
+    """Returns a NetworkX :class:`MultiGraph` or :class:`MultiDiGraph` from the
+    dot file with the passed path.
+
+    If this file contains multiple graphs, only the first such graph is
+    returned. All graphs _except_ the first are silently ignored.
+
+    Parameters
+    ----------
+    path : str or file
+        Filename or file handle.
+
+    Returns
+    -------
+    G : MultiGraph or MultiDiGraph
+        A :class:`MultiGraph` or :class:`MultiDiGraph`.
+
+    Notes
+    -----
+    Use `G = nx.Graph(nx.nx_pydot.read_dot(path))` to return a :class:`Graph` instead of a
+    :class:`MultiGraph`.
+    """
+    import pydot
+
+    data = path.read()
+
+    # List of one or more "pydot.Dot" instances deserialized from this file.
+    P_list = pydot.graph_from_dot_data(data)
+
+    # Convert only the first such instance into a NetworkX graph.
+    return from_pydot(P_list[0])
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+def from_pydot(P):
+    """Returns a NetworkX graph from a Pydot graph.
+
+    Parameters
+    ----------
+    P : Pydot graph
+      A graph created with Pydot
+
+    Returns
+    -------
+    G : NetworkX multigraph
+        A MultiGraph or MultiDiGraph.
+
+    Examples
+    --------
+    >>> K5 = nx.complete_graph(5)
+    >>> A = nx.nx_pydot.to_pydot(K5)
+    >>> G = nx.nx_pydot.from_pydot(A)  # return MultiGraph
+
+    # make a Graph instead of MultiGraph
+    >>> G = nx.Graph(nx.nx_pydot.from_pydot(A))
+
+    """
+
+    if P.get_strict(None):  # pydot bug: get_strict() shouldn't take argument
+        multiedges = False
+    else:
+        multiedges = True
+
+    if P.get_type() == "graph":  # undirected
+        if multiedges:
+            N = nx.MultiGraph()
+        else:
+            N = nx.Graph()
+    else:
+        if multiedges:
+            N = nx.MultiDiGraph()
+        else:
+            N = nx.DiGraph()
+
+    # assign defaults
+    name = P.get_name().strip('"')
+    if name != "":
+        N.name = name
+
+    # add nodes, attributes to N.node_attr
+    for p in P.get_node_list():
+        n = p.get_name().strip('"')
+        if n in ("node", "graph", "edge"):
+            continue
+        N.add_node(n, **p.get_attributes())
+
+    # add edges
+    for e in P.get_edge_list():
+        u = e.get_source()
+        v = e.get_destination()
+        attr = e.get_attributes()
+        s = []
+        d = []
+
+        if isinstance(u, str):
+            s.append(u.strip('"'))
+        else:
+            for unodes in u["nodes"]:
+                s.append(unodes.strip('"'))
+
+        if isinstance(v, str):
+            d.append(v.strip('"'))
+        else:
+            for vnodes in v["nodes"]:
+                d.append(vnodes.strip('"'))
+
+        for source_node in s:
+            for destination_node in d:
+                N.add_edge(source_node, destination_node, **attr)
+
+    # add default attributes for graph, nodes, edges
+    pattr = P.get_attributes()
+    if pattr:
+        N.graph["graph"] = pattr
+    try:
+        N.graph["node"] = P.get_node_defaults()[0]
+    except (IndexError, TypeError):
+        pass  # N.graph['node']={}
+    try:
+        N.graph["edge"] = P.get_edge_defaults()[0]
+    except (IndexError, TypeError):
+        pass  # N.graph['edge']={}
+    return N
+
+
+def to_pydot(N):
+    """Returns a pydot graph from a NetworkX graph N.
+
+    Parameters
+    ----------
+    N : NetworkX graph
+      A graph created with NetworkX
+
+    Examples
+    --------
+    >>> K5 = nx.complete_graph(5)
+    >>> P = nx.nx_pydot.to_pydot(K5)
+
+    Notes
+    -----
+
+    """
+    import pydot
+
+    # set Graphviz graph type
+    if N.is_directed():
+        graph_type = "digraph"
+    else:
+        graph_type = "graph"
+    strict = nx.number_of_selfloops(N) == 0 and not N.is_multigraph()
+
+    name = N.name
+    graph_defaults = N.graph.get("graph", {})
+    if name == "":
+        P = pydot.Dot("", graph_type=graph_type, strict=strict, **graph_defaults)
+    else:
+        P = pydot.Dot(
+            f'"{name}"', graph_type=graph_type, strict=strict, **graph_defaults
+        )
+    try:
+        P.set_node_defaults(**N.graph["node"])
+    except KeyError:
+        pass
+    try:
+        P.set_edge_defaults(**N.graph["edge"])
+    except KeyError:
+        pass
+
+    for n, nodedata in N.nodes(data=True):
+        str_nodedata = {str(k): str(v) for k, v in nodedata.items()}
+        n = str(n)
+        p = pydot.Node(n, **str_nodedata)
+        P.add_node(p)
+
+    if N.is_multigraph():
+        for u, v, key, edgedata in N.edges(data=True, keys=True):
+            str_edgedata = {str(k): str(v) for k, v in edgedata.items() if k != "key"}
+            u, v = str(u), str(v)
+            edge = pydot.Edge(u, v, key=str(key), **str_edgedata)
+            P.add_edge(edge)
+
+    else:
+        for u, v, edgedata in N.edges(data=True):
+            str_edgedata = {str(k): str(v) for k, v in edgedata.items()}
+            u, v = str(u), str(v)
+            edge = pydot.Edge(u, v, **str_edgedata)
+            P.add_edge(edge)
+    return P
+
+
+def graphviz_layout(G, prog="neato", root=None):
+    """Create node positions using Pydot and Graphviz.
+
+    Returns a dictionary of positions keyed by node.
+
+    Parameters
+    ----------
+    G : NetworkX Graph
+        The graph for which the layout is computed.
+    prog : string (default: 'neato')
+        The name of the GraphViz program to use for layout.
+        Options depend on GraphViz version but may include:
+        'dot', 'twopi', 'fdp', 'sfdp', 'circo'
+    root : Node from G or None (default: None)
+        The node of G from which to start some layout algorithms.
+
+    Returns
+    -------
+      Dictionary of (x, y) positions keyed by node.
+
+    Examples
+    --------
+    >>> G = nx.complete_graph(4)
+    >>> pos = nx.nx_pydot.graphviz_layout(G)
+    >>> pos = nx.nx_pydot.graphviz_layout(G, prog="dot")
+
+    Notes
+    -----
+    This is a wrapper for pydot_layout.
+    """
+    return pydot_layout(G=G, prog=prog, root=root)
+
+
+def pydot_layout(G, prog="neato", root=None):
+    """Create node positions using :mod:`pydot` and Graphviz.
+
+    Parameters
+    ----------
+    G : Graph
+        NetworkX graph to be laid out.
+    prog : string  (default: 'neato')
+        Name of the GraphViz command to use for layout.
+        Options depend on GraphViz version but may include:
+        'dot', 'twopi', 'fdp', 'sfdp', 'circo'
+    root : Node from G or None (default: None)
+        The node of G from which to start some layout algorithms.
+
+    Returns
+    -------
+    dict
+        Dictionary of positions keyed by node.
+
+    Examples
+    --------
+    >>> G = nx.complete_graph(4)
+    >>> pos = nx.nx_pydot.pydot_layout(G)
+    >>> pos = nx.nx_pydot.pydot_layout(G, prog="dot")
+
+    Notes
+    -----
+    If you use complex node objects, they may have the same string
+    representation and GraphViz could treat them as the same node.
+    The layout may assign both nodes a single location. See Issue #1568
+    If this occurs in your case, consider relabeling the nodes just
+    for the layout computation using something similar to::
+
+        H = nx.convert_node_labels_to_integers(G, label_attribute="node_label")
+        H_layout = nx.nx_pydot.pydot_layout(H, prog="dot")
+        G_layout = {H.nodes[n]["node_label"]: p for n, p in H_layout.items()}
+
+    """
+    import pydot
+
+    P = to_pydot(G)
+    if root is not None:
+        P.set("root", str(root))
+
+    # List of low-level bytes comprising a string in the dot language converted
+    # from the passed graph with the passed external GraphViz command.
+    D_bytes = P.create_dot(prog=prog)
+
+    # Unique string decoded from these bytes with the preferred locale encoding
+    D = str(D_bytes, encoding=getpreferredencoding())
+
+    if D == "":  # no data returned
+        print(f"Graphviz layout with {prog} failed")
+        print()
+        print("To debug what happened try:")
+        print("P = nx.nx_pydot.to_pydot(G)")
+        print('P.write_dot("file.dot")')
+        print(f"And then run {prog} on file.dot")
+        return
+
+    # List of one or more "pydot.Dot" instances deserialized from this string.
+    Q_list = pydot.graph_from_dot_data(D)
+    assert len(Q_list) == 1
+
+    # The first and only such instance, as guaranteed by the above assertion.
+    Q = Q_list[0]
+
+    node_pos = {}
+    for n in G.nodes():
+        str_n = str(n)
+        node = Q.get_node(pydot.quote_id_if_necessary(str_n))
+
+        if isinstance(node, list):
+            node = node[0]
+        pos = node.get_pos()[1:-1]  # strip leading and trailing double quotes
+        if pos is not None:
+            xx, yy = pos.split(",")
+            node_pos[n] = (float(xx), float(yy))
+    return node_pos

wemm/lib/python3.10/site-packages/networkx/drawing/nx_pylab.py

@@ -0,0 +1,1979 @@
+"""
+**********
+Matplotlib
+**********
+
+Draw networks with matplotlib.
+
+Examples
+--------
+>>> G = nx.complete_graph(5)
+>>> nx.draw(G)
+
+See Also
+--------
+ - :doc:`matplotlib <matplotlib:index>`
+ - :func:`matplotlib.pyplot.scatter`
+ - :obj:`matplotlib.patches.FancyArrowPatch`
+"""
+
+import collections
+import itertools
+from numbers import Number
+
+import networkx as nx
+from networkx.drawing.layout import (
+    circular_layout,
+    forceatlas2_layout,
+    kamada_kawai_layout,
+    planar_layout,
+    random_layout,
+    shell_layout,
+    spectral_layout,
+    spring_layout,
+)
+
+__all__ = [
+    "draw",
+    "draw_networkx",
+    "draw_networkx_nodes",
+    "draw_networkx_edges",
+    "draw_networkx_labels",
+    "draw_networkx_edge_labels",
+    "draw_circular",
+    "draw_kamada_kawai",
+    "draw_random",
+    "draw_spectral",
+    "draw_spring",
+    "draw_planar",
+    "draw_shell",
+    "draw_forceatlas2",
+]
+
+
+def draw(G, pos=None, ax=None, **kwds):
+    """Draw the graph G with Matplotlib.
+
+    Draw the graph as a simple representation with no node
+    labels or edge labels and using the full Matplotlib figure area
+    and no axis labels by default.  See draw_networkx() for more
+    full-featured drawing that allows title, axis labels etc.
+
+    Parameters
+    ----------
+    G : graph
+        A networkx graph
+
+    pos : dictionary, optional
+        A dictionary with nodes as keys and positions as values.
+        If not specified a spring layout positioning will be computed.
+        See :py:mod:`networkx.drawing.layout` for functions that
+        compute node positions.
+
+    ax : Matplotlib Axes object, optional
+        Draw the graph in specified Matplotlib axes.
+
+    kwds : optional keywords
+        See networkx.draw_networkx() for a description of optional keywords.
+
+    Examples
+    --------
+    >>> G = nx.dodecahedral_graph()
+    >>> nx.draw(G)
+    >>> nx.draw(G, pos=nx.spring_layout(G))  # use spring layout
+
+    See Also
+    --------
+    draw_networkx
+    draw_networkx_nodes
+    draw_networkx_edges
+    draw_networkx_labels
+    draw_networkx_edge_labels
+
+    Notes
+    -----
+    This function has the same name as pylab.draw and pyplot.draw
+    so beware when using `from networkx import *`
+
+    since you might overwrite the pylab.draw function.
+
+    With pyplot use
+
+    >>> import matplotlib.pyplot as plt
+    >>> G = nx.dodecahedral_graph()
+    >>> nx.draw(G)  # networkx draw()
+    >>> plt.draw()  # pyplot draw()
+
+    Also see the NetworkX drawing examples at
+    https://networkx.org/documentation/latest/auto_examples/index.html
+    """
+    import matplotlib.pyplot as plt
+
+    if ax is None:
+        cf = plt.gcf()
+    else:
+        cf = ax.get_figure()
+    cf.set_facecolor("w")
+    if ax is None:
+        if cf.axes:
+            ax = cf.gca()
+        else:
+            ax = cf.add_axes((0, 0, 1, 1))
+
+    if "with_labels" not in kwds:
+        kwds["with_labels"] = "labels" in kwds
+
+    draw_networkx(G, pos=pos, ax=ax, **kwds)
+    ax.set_axis_off()
+    plt.draw_if_interactive()
+    return
+
+
+def draw_networkx(G, pos=None, arrows=None, with_labels=True, **kwds):
+    r"""Draw the graph G using Matplotlib.
+
+    Draw the graph with Matplotlib with options for node positions,
+    labeling, titles, and many other drawing features.
+    See draw() for simple drawing without labels or axes.
+
+    Parameters
+    ----------
+    G : graph
+        A networkx graph
+
+    pos : dictionary, optional
+        A dictionary with nodes as keys and positions as values.
+        If not specified a spring layout positioning will be computed.
+        See :py:mod:`networkx.drawing.layout` for functions that
+        compute node positions.
+
+    arrows : bool or None, optional (default=None)
+        If `None`, directed graphs draw arrowheads with
+        `~matplotlib.patches.FancyArrowPatch`, while undirected graphs draw edges
+        via `~matplotlib.collections.LineCollection` for speed.
+        If `True`, draw arrowheads with FancyArrowPatches (bendable and stylish).
+        If `False`, draw edges using LineCollection (linear and fast).
+        For directed graphs, if True draw arrowheads.
+        Note: Arrows will be the same color as edges.
+
+    arrowstyle : str (default='-\|>' for directed graphs)
+        For directed graphs, choose the style of the arrowsheads.
+        For undirected graphs default to '-'
+
+        See `matplotlib.patches.ArrowStyle` for more options.
+
+    arrowsize : int or list (default=10)
+        For directed graphs, choose the size of the arrow head's length and
+        width. A list of values can be passed in to assign a different size for arrow head's length and width.
+        See `matplotlib.patches.FancyArrowPatch` for attribute `mutation_scale`
+        for more info.
+
+    with_labels :  bool (default=True)
+        Set to True to draw labels on the nodes.
+
+    ax : Matplotlib Axes object, optional
+        Draw the graph in the specified Matplotlib axes.
+
+    nodelist : list (default=list(G))
+        Draw only specified nodes
+
+    edgelist : list (default=list(G.edges()))
+        Draw only specified edges
+
+    node_size : scalar or array (default=300)
+        Size of nodes.  If an array is specified it must be the
+        same length as nodelist.
+
+    node_color : color or array of colors (default='#1f78b4')
+        Node color. Can be a single color or a sequence of colors with the same
+        length as nodelist. Color can be string or rgb (or rgba) tuple of
+        floats from 0-1. If numeric values are specified they will be
+        mapped to colors using the cmap and vmin,vmax parameters. See
+        matplotlib.scatter for more details.
+
+    node_shape :  string (default='o')
+        The shape of the node.  Specification is as matplotlib.scatter
+        marker, one of 'so^>v<dph8'.
+
+    alpha : float or None (default=None)
+        The node and edge transparency
+
+    cmap : Matplotlib colormap, optional
+        Colormap for mapping intensities of nodes
+
+    vmin,vmax : float, optional
+        Minimum and maximum for node colormap scaling
+
+    linewidths : scalar or sequence (default=1.0)
+        Line width of symbol border
+
+    width : float or array of floats (default=1.0)
+        Line width of edges
+
+    edge_color : color or array of colors (default='k')
+        Edge color. Can be a single color or a sequence of colors with the same
+        length as edgelist. Color can be string or rgb (or rgba) tuple of
+        floats from 0-1. If numeric values are specified they will be
+        mapped to colors using the edge_cmap and edge_vmin,edge_vmax parameters.
+
+    edge_cmap : Matplotlib colormap, optional
+        Colormap for mapping intensities of edges
+
+    edge_vmin,edge_vmax : floats, optional
+        Minimum and maximum for edge colormap scaling
+
+    style : string (default=solid line)
+        Edge line style e.g.: '-', '--', '-.', ':'
+        or words like 'solid' or 'dashed'.
+        (See `matplotlib.patches.FancyArrowPatch`: `linestyle`)
+
+    labels : dictionary (default=None)
+        Node labels in a dictionary of text labels keyed by node
+
+    font_size : int (default=12 for nodes, 10 for edges)
+        Font size for text labels
+
+    font_color : color (default='k' black)
+        Font color string. Color can be string or rgb (or rgba) tuple of
+        floats from 0-1.
+
+    font_weight : string (default='normal')
+        Font weight
+
+    font_family : string (default='sans-serif')
+        Font family
+
+    label : string, optional
+        Label for graph legend
+
+    hide_ticks : bool, optional
+        Hide ticks of axes. When `True` (the default), ticks and ticklabels
+        are removed from the axes. To set ticks and tick labels to the pyplot default,
+        use ``hide_ticks=False``.
+
+    kwds : optional keywords
+        See networkx.draw_networkx_nodes(), networkx.draw_networkx_edges(), and
+        networkx.draw_networkx_labels() for a description of optional keywords.
+
+    Notes
+    -----
+    For directed graphs, arrows  are drawn at the head end.  Arrows can be
+    turned off with keyword arrows=False.
+
+    Examples
+    --------
+    >>> G = nx.dodecahedral_graph()
+    >>> nx.draw(G)
+    >>> nx.draw(G, pos=nx.spring_layout(G))  # use spring layout
+
+    >>> import matplotlib.pyplot as plt
+    >>> limits = plt.axis("off")  # turn off axis
+
+    Also see the NetworkX drawing examples at
+    https://networkx.org/documentation/latest/auto_examples/index.html
+
+    See Also
+    --------
+    draw
+    draw_networkx_nodes
+    draw_networkx_edges
+    draw_networkx_labels
+    draw_networkx_edge_labels
+    """
+    from inspect import signature
+
+    import matplotlib.pyplot as plt
+
+    # Get all valid keywords by inspecting the signatures of draw_networkx_nodes,
+    # draw_networkx_edges, draw_networkx_labels
+
+    valid_node_kwds = signature(draw_networkx_nodes).parameters.keys()
+    valid_edge_kwds = signature(draw_networkx_edges).parameters.keys()
+    valid_label_kwds = signature(draw_networkx_labels).parameters.keys()
+
+    # Create a set with all valid keywords across the three functions and
+    # remove the arguments of this function (draw_networkx)
+    valid_kwds = (valid_node_kwds | valid_edge_kwds | valid_label_kwds) - {
+        "G",
+        "pos",
+        "arrows",
+        "with_labels",
+    }
+
+    if any(k not in valid_kwds for k in kwds):
+        invalid_args = ", ".join([k for k in kwds if k not in valid_kwds])
+        raise ValueError(f"Received invalid argument(s): {invalid_args}")
+
+    node_kwds = {k: v for k, v in kwds.items() if k in valid_node_kwds}
+    edge_kwds = {k: v for k, v in kwds.items() if k in valid_edge_kwds}
+    label_kwds = {k: v for k, v in kwds.items() if k in valid_label_kwds}
+
+    if pos is None:
+        pos = nx.drawing.spring_layout(G)  # default to spring layout
+
+    draw_networkx_nodes(G, pos, **node_kwds)
+    draw_networkx_edges(G, pos, arrows=arrows, **edge_kwds)
+    if with_labels:
+        draw_networkx_labels(G, pos, **label_kwds)
+    plt.draw_if_interactive()
+
+
+def draw_networkx_nodes(
+    G,
+    pos,
+    nodelist=None,
+    node_size=300,
+    node_color="#1f78b4",
+    node_shape="o",
+    alpha=None,
+    cmap=None,
+    vmin=None,
+    vmax=None,
+    ax=None,
+    linewidths=None,
+    edgecolors=None,
+    label=None,
+    margins=None,
+    hide_ticks=True,
+):
+    """Draw the nodes of the graph G.
+
+    This draws only the nodes of the graph G.
+
+    Parameters
+    ----------
+    G : graph
+        A networkx graph
+
+    pos : dictionary
+        A dictionary with nodes as keys and positions as values.
+        Positions should be sequences of length 2.
+
+    ax : Matplotlib Axes object, optional
+        Draw the graph in the specified Matplotlib axes.
+
+    nodelist : list (default list(G))
+        Draw only specified nodes
+
+    node_size : scalar or array (default=300)
+        Size of nodes.  If an array it must be the same length as nodelist.
+
+    node_color : color or array of colors (default='#1f78b4')
+        Node color. Can be a single color or a sequence of colors with the same
+        length as nodelist. Color can be string or rgb (or rgba) tuple of
+        floats from 0-1. If numeric values are specified they will be
+        mapped to colors using the cmap and vmin,vmax parameters. See
+        matplotlib.scatter for more details.
+
+    node_shape :  string (default='o')
+        The shape of the node.  Specification is as matplotlib.scatter
+        marker, one of 'so^>v<dph8'.
+
+    alpha : float or array of floats (default=None)
+        The node transparency.  This can be a single alpha value,
+        in which case it will be applied to all the nodes of color. Otherwise,
+        if it is an array, the elements of alpha will be applied to the colors
+        in order (cycling through alpha multiple times if necessary).
+
+    cmap : Matplotlib colormap (default=None)
+        Colormap for mapping intensities of nodes
+
+    vmin,vmax : floats or None (default=None)
+        Minimum and maximum for node colormap scaling
+
+    linewidths : [None | scalar | sequence] (default=1.0)
+        Line width of symbol border
+
+    edgecolors : [None | scalar | sequence] (default = node_color)
+        Colors of node borders. Can be a single color or a sequence of colors with the
+        same length as nodelist. Color can be string or rgb (or rgba) tuple of floats
+        from 0-1. If numeric values are specified they will be mapped to colors
+        using the cmap and vmin,vmax parameters. See `~matplotlib.pyplot.scatter` for more details.
+
+    label : [None | string]
+        Label for legend
+
+    margins : float or 2-tuple, optional
+        Sets the padding for axis autoscaling. Increase margin to prevent
+        clipping for nodes that are near the edges of an image. Values should
+        be in the range ``[0, 1]``. See :meth:`matplotlib.axes.Axes.margins`
+        for details. The default is `None`, which uses the Matplotlib default.
+
+    hide_ticks : bool, optional
+        Hide ticks of axes. When `True` (the default), ticks and ticklabels
+        are removed from the axes. To set ticks and tick labels to the pyplot default,
+        use ``hide_ticks=False``.
+
+    Returns
+    -------
+    matplotlib.collections.PathCollection
+        `PathCollection` of the nodes.
+
+    Examples
+    --------
+    >>> G = nx.dodecahedral_graph()
+    >>> nodes = nx.draw_networkx_nodes(G, pos=nx.spring_layout(G))
+
+    Also see the NetworkX drawing examples at
+    https://networkx.org/documentation/latest/auto_examples/index.html
+
+    See Also
+    --------
+    draw
+    draw_networkx
+    draw_networkx_edges
+    draw_networkx_labels
+    draw_networkx_edge_labels
+    """
+    from collections.abc import Iterable
+
+    import matplotlib as mpl
+    import matplotlib.collections  # call as mpl.collections
+    import matplotlib.pyplot as plt
+    import numpy as np
+
+    if ax is None:
+        ax = plt.gca()
+
+    if nodelist is None:
+        nodelist = list(G)
+
+    if len(nodelist) == 0:  # empty nodelist, no drawing
+        return mpl.collections.PathCollection(None)
+
+    try:
+        xy = np.asarray([pos[v] for v in nodelist])
+    except KeyError as err:
+        raise nx.NetworkXError(f"Node {err} has no position.") from err
+
+    if isinstance(alpha, Iterable):
+        node_color = apply_alpha(node_color, alpha, nodelist, cmap, vmin, vmax)
+        alpha = None
+
+    if not isinstance(node_shape, np.ndarray) and not isinstance(node_shape, list):
+        node_shape = np.array([node_shape for _ in range(len(nodelist))])
+
+    for shape in np.unique(node_shape):
+        node_collection = ax.scatter(
+            xy[node_shape == shape, 0],
+            xy[node_shape == shape, 1],
+            s=node_size,
+            c=node_color,
+            marker=shape,
+            cmap=cmap,
+            vmin=vmin,
+            vmax=vmax,
+            alpha=alpha,
+            linewidths=linewidths,
+            edgecolors=edgecolors,
+            label=label,
+        )
+    if hide_ticks:
+        ax.tick_params(
+            axis="both",
+            which="both",
+            bottom=False,
+            left=False,
+            labelbottom=False,
+            labelleft=False,
+        )
+
+    if margins is not None:
+        if isinstance(margins, Iterable):
+            ax.margins(*margins)
+        else:
+            ax.margins(margins)
+
+    node_collection.set_zorder(2)
+    return node_collection
+
+
+class FancyArrowFactory:
+    """Draw arrows with `matplotlib.patches.FancyarrowPatch`"""
+
+    class ConnectionStyleFactory:
+        def __init__(self, connectionstyles, selfloop_height, ax=None):
+            import matplotlib as mpl
+            import matplotlib.path  # call as mpl.path
+            import numpy as np
+
+            self.ax = ax
+            self.mpl = mpl
+            self.np = np
+            self.base_connection_styles = [
+                mpl.patches.ConnectionStyle(cs) for cs in connectionstyles
+            ]
+            self.n = len(self.base_connection_styles)
+            self.selfloop_height = selfloop_height
+
+        def curved(self, edge_index):
+            return self.base_connection_styles[edge_index % self.n]
+
+        def self_loop(self, edge_index):
+            def self_loop_connection(posA, posB, *args, **kwargs):
+                if not self.np.all(posA == posB):
+                    raise nx.NetworkXError(
+                        "`self_loop` connection style method"
+                        "is only to be used for self-loops"
+                    )
+                # this is called with _screen space_ values
+                # so convert back to data space
+                data_loc = self.ax.transData.inverted().transform(posA)
+                v_shift = 0.1 * self.selfloop_height
+                h_shift = v_shift * 0.5
+                # put the top of the loop first so arrow is not hidden by node
+                path = self.np.asarray(
+                    [
+                        # 1
+                        [0, v_shift],
+                        # 4 4 4
+                        [h_shift, v_shift],
+                        [h_shift, 0],
+                        [0, 0],
+                        # 4 4 4
+                        [-h_shift, 0],
+                        [-h_shift, v_shift],
+                        [0, v_shift],
+                    ]
+                )
+                # Rotate self loop 90 deg. if more than 1
+                # This will allow for maximum of 4 visible self loops
+                if edge_index % 4:
+                    x, y = path.T
+                    for _ in range(edge_index % 4):
+                        x, y = y, -x
+                    path = self.np.array([x, y]).T
+                return self.mpl.path.Path(
+                    self.ax.transData.transform(data_loc + path), [1, 4, 4, 4, 4, 4, 4]
+                )
+
+            return self_loop_connection
+
+    def __init__(
+        self,
+        edge_pos,
+        edgelist,
+        nodelist,
+        edge_indices,
+        node_size,
+        selfloop_height,
+        connectionstyle="arc3",
+        node_shape="o",
+        arrowstyle="-",
+        arrowsize=10,
+        edge_color="k",
+        alpha=None,
+        linewidth=1.0,
+        style="solid",
+        min_source_margin=0,
+        min_target_margin=0,
+        ax=None,
+    ):
+        import matplotlib as mpl
+        import matplotlib.patches  # call as mpl.patches
+        import matplotlib.pyplot as plt
+        import numpy as np
+
+        if isinstance(connectionstyle, str):
+            connectionstyle = [connectionstyle]
+        elif np.iterable(connectionstyle):
+            connectionstyle = list(connectionstyle)
+        else:
+            msg = "ConnectionStyleFactory arg `connectionstyle` must be str or iterable"
+            raise nx.NetworkXError(msg)
+        self.ax = ax
+        self.mpl = mpl
+        self.np = np
+        self.edge_pos = edge_pos
+        self.edgelist = edgelist
+        self.nodelist = nodelist
+        self.node_shape = node_shape
+        self.min_source_margin = min_source_margin
+        self.min_target_margin = min_target_margin
+        self.edge_indices = edge_indices
+        self.node_size = node_size
+        self.connectionstyle_factory = self.ConnectionStyleFactory(
+            connectionstyle, selfloop_height, ax
+        )
+        self.arrowstyle = arrowstyle
+        self.arrowsize = arrowsize
+        self.arrow_colors = mpl.colors.colorConverter.to_rgba_array(edge_color, alpha)
+        self.linewidth = linewidth
+        self.style = style
+        if isinstance(arrowsize, list) and len(arrowsize) != len(edge_pos):
+            raise ValueError("arrowsize should have the same length as edgelist")
+
+    def __call__(self, i):
+        (x1, y1), (x2, y2) = self.edge_pos[i]
+        shrink_source = 0  # space from source to tail
+        shrink_target = 0  # space from  head to target
+        if (
+            self.np.iterable(self.min_source_margin)
+            and not isinstance(self.min_source_margin, str)
+            and not isinstance(self.min_source_margin, tuple)
+        ):
+            min_source_margin = self.min_source_margin[i]
+        else:
+            min_source_margin = self.min_source_margin
+
+        if (
+            self.np.iterable(self.min_target_margin)
+            and not isinstance(self.min_target_margin, str)
+            and not isinstance(self.min_target_margin, tuple)
+        ):
+            min_target_margin = self.min_target_margin[i]
+        else:
+            min_target_margin = self.min_target_margin
+
+        if self.np.iterable(self.node_size):  # many node sizes
+            source, target = self.edgelist[i][:2]
+            source_node_size = self.node_size[self.nodelist.index(source)]
+            target_node_size = self.node_size[self.nodelist.index(target)]
+            shrink_source = self.to_marker_edge(source_node_size, self.node_shape)
+            shrink_target = self.to_marker_edge(target_node_size, self.node_shape)
+        else:
+            shrink_source = self.to_marker_edge(self.node_size, self.node_shape)
+            shrink_target = shrink_source
+        shrink_source = max(shrink_source, min_source_margin)
+        shrink_target = max(shrink_target, min_target_margin)
+
+        # scale factor of arrow head
+        if isinstance(self.arrowsize, list):
+            mutation_scale = self.arrowsize[i]
+        else:
+            mutation_scale = self.arrowsize
+
+        if len(self.arrow_colors) > i:
+            arrow_color = self.arrow_colors[i]
+        elif len(self.arrow_colors) == 1:
+            arrow_color = self.arrow_colors[0]
+        else:  # Cycle through colors
+            arrow_color = self.arrow_colors[i % len(self.arrow_colors)]
+
+        if self.np.iterable(self.linewidth):
+            if len(self.linewidth) > i:
+                linewidth = self.linewidth[i]
+            else:
+                linewidth = self.linewidth[i % len(self.linewidth)]
+        else:
+            linewidth = self.linewidth
+
+        if (
+            self.np.iterable(self.style)
+            and not isinstance(self.style, str)
+            and not isinstance(self.style, tuple)
+        ):
+            if len(self.style) > i:
+                linestyle = self.style[i]
+            else:  # Cycle through styles
+                linestyle = self.style[i % len(self.style)]
+        else:
+            linestyle = self.style
+
+        if x1 == x2 and y1 == y2:
+            connectionstyle = self.connectionstyle_factory.self_loop(
+                self.edge_indices[i]
+            )
+        else:
+            connectionstyle = self.connectionstyle_factory.curved(self.edge_indices[i])
+
+        if (
+            self.np.iterable(self.arrowstyle)
+            and not isinstance(self.arrowstyle, str)
+            and not isinstance(self.arrowstyle, tuple)
+        ):
+            arrowstyle = self.arrowstyle[i]
+        else:
+            arrowstyle = self.arrowstyle
+
+        return self.mpl.patches.FancyArrowPatch(
+            (x1, y1),
+            (x2, y2),
+            arrowstyle=arrowstyle,
+            shrinkA=shrink_source,
+            shrinkB=shrink_target,
+            mutation_scale=mutation_scale,
+            color=arrow_color,
+            linewidth=linewidth,
+            connectionstyle=connectionstyle,
+            linestyle=linestyle,
+            zorder=1,  # arrows go behind nodes
+        )
+
+    def to_marker_edge(self, marker_size, marker):
+        if marker in "s^>v<d":  # `large` markers need extra space
+            return self.np.sqrt(2 * marker_size) / 2
+        else:
+            return self.np.sqrt(marker_size) / 2
+
+
+def draw_networkx_edges(
+    G,
+    pos,
+    edgelist=None,
+    width=1.0,
+    edge_color="k",
+    style="solid",
+    alpha=None,
+    arrowstyle=None,
+    arrowsize=10,
+    edge_cmap=None,
+    edge_vmin=None,
+    edge_vmax=None,
+    ax=None,
+    arrows=None,
+    label=None,
+    node_size=300,
+    nodelist=None,
+    node_shape="o",
+    connectionstyle="arc3",
+    min_source_margin=0,
+    min_target_margin=0,
+    hide_ticks=True,
+):
+    r"""Draw the edges of the graph G.
+
+    This draws only the edges of the graph G.
+
+    Parameters
+    ----------
+    G : graph
+        A networkx graph
+
+    pos : dictionary
+        A dictionary with nodes as keys and positions as values.
+        Positions should be sequences of length 2.
+
+    edgelist : collection of edge tuples (default=G.edges())
+        Draw only specified edges
+
+    width : float or array of floats (default=1.0)
+        Line width of edges
+
+    edge_color : color or array of colors (default='k')
+        Edge color. Can be a single color or a sequence of colors with the same
+        length as edgelist. Color can be string or rgb (or rgba) tuple of
+        floats from 0-1. If numeric values are specified they will be
+        mapped to colors using the edge_cmap and edge_vmin,edge_vmax parameters.
+
+    style : string or array of strings (default='solid')
+        Edge line style e.g.: '-', '--', '-.', ':'
+        or words like 'solid' or 'dashed'.
+        Can be a single style or a sequence of styles with the same
+        length as the edge list.
+        If less styles than edges are given the styles will cycle.
+        If more styles than edges are given the styles will be used sequentially
+        and not be exhausted.
+        Also, `(offset, onoffseq)` tuples can be used as style instead of a strings.
+        (See `matplotlib.patches.FancyArrowPatch`: `linestyle`)
+
+    alpha : float or array of floats (default=None)
+        The edge transparency.  This can be a single alpha value,
+        in which case it will be applied to all specified edges. Otherwise,
+        if it is an array, the elements of alpha will be applied to the colors
+        in order (cycling through alpha multiple times if necessary).
+
+    edge_cmap : Matplotlib colormap, optional
+        Colormap for mapping intensities of edges
+
+    edge_vmin,edge_vmax : floats, optional
+        Minimum and maximum for edge colormap scaling
+
+    ax : Matplotlib Axes object, optional
+        Draw the graph in the specified Matplotlib axes.
+
+    arrows : bool or None, optional (default=None)
+        If `None`, directed graphs draw arrowheads with
+        `~matplotlib.patches.FancyArrowPatch`, while undirected graphs draw edges
+        via `~matplotlib.collections.LineCollection` for speed.
+        If `True`, draw arrowheads with FancyArrowPatches (bendable and stylish).
+        If `False`, draw edges using LineCollection (linear and fast).
+
+        Note: Arrowheads will be the same color as edges.
+
+    arrowstyle : str or list of strs (default='-\|>' for directed graphs)
+        For directed graphs and `arrows==True` defaults to '-\|>',
+        For undirected graphs default to '-'.
+
+        See `matplotlib.patches.ArrowStyle` for more options.
+
+    arrowsize : int or list of ints(default=10)
+        For directed graphs, choose the size of the arrow head's length and
+        width. See `matplotlib.patches.FancyArrowPatch` for attribute
+        `mutation_scale` for more info.
+
+    connectionstyle : string or iterable of strings (default="arc3")
+        Pass the connectionstyle parameter to create curved arc of rounding
+        radius rad. For example, connectionstyle='arc3,rad=0.2'.
+        See `matplotlib.patches.ConnectionStyle` and
+        `matplotlib.patches.FancyArrowPatch` for more info.
+        If Iterable, index indicates i'th edge key of MultiGraph
+
+    node_size : scalar or array (default=300)
+        Size of nodes. Though the nodes are not drawn with this function, the
+        node size is used in determining edge positioning.
+
+    nodelist : list, optional (default=G.nodes())
+       This provides the node order for the `node_size` array (if it is an array).
+
+    node_shape :  string (default='o')
+        The marker used for nodes, used in determining edge positioning.
+        Specification is as a `matplotlib.markers` marker, e.g. one of 'so^>v<dph8'.
+
+    label : None or string
+        Label for legend
+
+    min_source_margin : int or list of ints (default=0)
+        The minimum margin (gap) at the beginning of the edge at the source.
+
+    min_target_margin : int or list of ints (default=0)
+        The minimum margin (gap) at the end of the edge at the target.
+
+    hide_ticks : bool, optional
+        Hide ticks of axes. When `True` (the default), ticks and ticklabels
+        are removed from the axes. To set ticks and tick labels to the pyplot default,
+        use ``hide_ticks=False``.
+
+    Returns
+    -------
+     matplotlib.collections.LineCollection or a list of matplotlib.patches.FancyArrowPatch
+        If ``arrows=True``, a list of FancyArrowPatches is returned.
+        If ``arrows=False``, a LineCollection is returned.
+        If ``arrows=None`` (the default), then a LineCollection is returned if
+        `G` is undirected, otherwise returns a list of FancyArrowPatches.
+
+    Notes
+    -----
+    For directed graphs, arrows are drawn at the head end.  Arrows can be
+    turned off with keyword arrows=False or by passing an arrowstyle without
+    an arrow on the end.
+
+    Be sure to include `node_size` as a keyword argument; arrows are
+    drawn considering the size of nodes.
+
+    Self-loops are always drawn with `~matplotlib.patches.FancyArrowPatch`
+    regardless of the value of `arrows` or whether `G` is directed.
+    When ``arrows=False`` or ``arrows=None`` and `G` is undirected, the
+    FancyArrowPatches corresponding to the self-loops are not explicitly
+    returned. They should instead be accessed via the ``Axes.patches``
+    attribute (see examples).
+
+    Examples
+    --------
+    >>> G = nx.dodecahedral_graph()
+    >>> edges = nx.draw_networkx_edges(G, pos=nx.spring_layout(G))
+
+    >>> G = nx.DiGraph()
+    >>> G.add_edges_from([(1, 2), (1, 3), (2, 3)])
+    >>> arcs = nx.draw_networkx_edges(G, pos=nx.spring_layout(G))
+    >>> alphas = [0.3, 0.4, 0.5]
+    >>> for i, arc in enumerate(arcs):  # change alpha values of arcs
+    ...     arc.set_alpha(alphas[i])
+
+    The FancyArrowPatches corresponding to self-loops are not always
+    returned, but can always be accessed via the ``patches`` attribute of the
+    `matplotlib.Axes` object.
+
+    >>> import matplotlib.pyplot as plt
+    >>> fig, ax = plt.subplots()
+    >>> G = nx.Graph([(0, 1), (0, 0)])  # Self-loop at node 0
+    >>> edge_collection = nx.draw_networkx_edges(G, pos=nx.circular_layout(G), ax=ax)
+    >>> self_loop_fap = ax.patches[0]
+
+    Also see the NetworkX drawing examples at
+    https://networkx.org/documentation/latest/auto_examples/index.html
+
+    See Also
+    --------
+    draw
+    draw_networkx
+    draw_networkx_nodes
+    draw_networkx_labels
+    draw_networkx_edge_labels
+
+    """
+    import warnings
+
+    import matplotlib as mpl
+    import matplotlib.collections  # call as mpl.collections
+    import matplotlib.colors  # call as mpl.colors
+    import matplotlib.pyplot as plt
+    import numpy as np
+
+    # The default behavior is to use LineCollection to draw edges for
+    # undirected graphs (for performance reasons) and use FancyArrowPatches
+    # for directed graphs.
+    # The `arrows` keyword can be used to override the default behavior
+    if arrows is None:
+        use_linecollection = not (G.is_directed() or G.is_multigraph())
+    else:
+        if not isinstance(arrows, bool):
+            raise TypeError("Argument `arrows` must be of type bool or None")
+        use_linecollection = not arrows
+
+    if isinstance(connectionstyle, str):
+        connectionstyle = [connectionstyle]
+    elif np.iterable(connectionstyle):
+        connectionstyle = list(connectionstyle)
+    else:
+        msg = "draw_networkx_edges arg `connectionstyle` must be str or iterable"
+        raise nx.NetworkXError(msg)
+
+    # Some kwargs only apply to FancyArrowPatches. Warn users when they use
+    # non-default values for these kwargs when LineCollection is being used
+    # instead of silently ignoring the specified option
+    if use_linecollection:
+        msg = (
+            "\n\nThe {0} keyword argument is not applicable when drawing edges\n"
+            "with LineCollection.\n\n"
+            "To make this warning go away, either specify `arrows=True` to\n"
+            "force FancyArrowPatches or use the default values.\n"
+            "Note that using FancyArrowPatches may be slow for large graphs.\n"
+        )
+        if arrowstyle is not None:
+            warnings.warn(msg.format("arrowstyle"), category=UserWarning, stacklevel=2)
+        if arrowsize != 10:
+            warnings.warn(msg.format("arrowsize"), category=UserWarning, stacklevel=2)
+        if min_source_margin != 0:
+            warnings.warn(
+                msg.format("min_source_margin"), category=UserWarning, stacklevel=2
+            )
+        if min_target_margin != 0:
+            warnings.warn(
+                msg.format("min_target_margin"), category=UserWarning, stacklevel=2
+            )
+        if any(cs != "arc3" for cs in connectionstyle):
+            warnings.warn(
+                msg.format("connectionstyle"), category=UserWarning, stacklevel=2
+            )
+
+    # NOTE: Arrowstyle modification must occur after the warnings section
+    if arrowstyle is None:
+        arrowstyle = "-|>" if G.is_directed() else "-"
+
+    if ax is None:
+        ax = plt.gca()
+
+    if edgelist is None:
+        edgelist = list(G.edges)  # (u, v, k) for multigraph (u, v) otherwise
+
+    if len(edgelist):
+        if G.is_multigraph():
+            key_count = collections.defaultdict(lambda: itertools.count(0))
+            edge_indices = [next(key_count[tuple(e[:2])]) for e in edgelist]
+        else:
+            edge_indices = [0] * len(edgelist)
+    else:  # no edges!
+        return []
+
+    if nodelist is None:
+        nodelist = list(G.nodes())
+
+    # FancyArrowPatch handles color=None different from LineCollection
+    if edge_color is None:
+        edge_color = "k"
+
+    # set edge positions
+    edge_pos = np.asarray([(pos[e[0]], pos[e[1]]) for e in edgelist])
+
+    # Check if edge_color is an array of floats and map to edge_cmap.
+    # This is the only case handled differently from matplotlib
+    if (
+        np.iterable(edge_color)
+        and (len(edge_color) == len(edge_pos))
+        and np.all([isinstance(c, Number) for c in edge_color])
+    ):
+        if edge_cmap is not None:
+            assert isinstance(edge_cmap, mpl.colors.Colormap)
+        else:
+            edge_cmap = plt.get_cmap()
+        if edge_vmin is None:
+            edge_vmin = min(edge_color)
+        if edge_vmax is None:
+            edge_vmax = max(edge_color)
+        color_normal = mpl.colors.Normalize(vmin=edge_vmin, vmax=edge_vmax)
+        edge_color = [edge_cmap(color_normal(e)) for e in edge_color]
+
+    # compute initial view
+    minx = np.amin(np.ravel(edge_pos[:, :, 0]))
+    maxx = np.amax(np.ravel(edge_pos[:, :, 0]))
+    miny = np.amin(np.ravel(edge_pos[:, :, 1]))
+    maxy = np.amax(np.ravel(edge_pos[:, :, 1]))
+    w = maxx - minx
+    h = maxy - miny
+
+    # Self-loops are scaled by view extent, except in cases the extent
+    # is 0, e.g. for a single node. In this case, fall back to scaling
+    # by the maximum node size
+    selfloop_height = h if h != 0 else 0.005 * np.array(node_size).max()
+    fancy_arrow_factory = FancyArrowFactory(
+        edge_pos,
+        edgelist,
+        nodelist,
+        edge_indices,
+        node_size,
+        selfloop_height,
+        connectionstyle,
+        node_shape,
+        arrowstyle,
+        arrowsize,
+        edge_color,
+        alpha,
+        width,
+        style,
+        min_source_margin,
+        min_target_margin,
+        ax=ax,
+    )
+
+    # Draw the edges
+    if use_linecollection:
+        edge_collection = mpl.collections.LineCollection(
+            edge_pos,
+            colors=edge_color,
+            linewidths=width,
+            antialiaseds=(1,),
+            linestyle=style,
+            alpha=alpha,
+        )
+        edge_collection.set_cmap(edge_cmap)
+        edge_collection.set_clim(edge_vmin, edge_vmax)
+        edge_collection.set_zorder(1)  # edges go behind nodes
+        edge_collection.set_label(label)
+        ax.add_collection(edge_collection)
+        edge_viz_obj = edge_collection
+
+        # Make sure selfloop edges are also drawn
+        # ---------------------------------------
+        selfloops_to_draw = [loop for loop in nx.selfloop_edges(G) if loop in edgelist]
+        if selfloops_to_draw:
+            edgelist_tuple = list(map(tuple, edgelist))
+            arrow_collection = []
+            for loop in selfloops_to_draw:
+                i = edgelist_tuple.index(loop)
+                arrow = fancy_arrow_factory(i)
+                arrow_collection.append(arrow)
+                ax.add_patch(arrow)
+    else:
+        edge_viz_obj = []
+        for i in range(len(edgelist)):
+            arrow = fancy_arrow_factory(i)
+            ax.add_patch(arrow)
+            edge_viz_obj.append(arrow)
+
+    # update view after drawing
+    padx, pady = 0.05 * w, 0.05 * h
+    corners = (minx - padx, miny - pady), (maxx + padx, maxy + pady)
+    ax.update_datalim(corners)
+    ax.autoscale_view()
+
+    if hide_ticks:
+        ax.tick_params(
+            axis="both",
+            which="both",
+            bottom=False,
+            left=False,
+            labelbottom=False,
+            labelleft=False,
+        )
+
+    return edge_viz_obj
+
+
+def draw_networkx_labels(
+    G,
+    pos,
+    labels=None,
+    font_size=12,
+    font_color="k",
+    font_family="sans-serif",
+    font_weight="normal",
+    alpha=None,
+    bbox=None,
+    horizontalalignment="center",
+    verticalalignment="center",
+    ax=None,
+    clip_on=True,
+    hide_ticks=True,
+):
+    """Draw node labels on the graph G.
+
+    Parameters
+    ----------
+    G : graph
+        A networkx graph
+
+    pos : dictionary
+        A dictionary with nodes as keys and positions as values.
+        Positions should be sequences of length 2.
+
+    labels : dictionary (default={n: n for n in G})
+        Node labels in a dictionary of text labels keyed by node.
+        Node-keys in labels should appear as keys in `pos`.
+        If needed use: `{n:lab for n,lab in labels.items() if n in pos}`
+
+    font_size : int or dictionary of nodes to ints (default=12)
+        Font size for text labels.
+
+    font_color : color or dictionary of nodes to colors (default='k' black)
+        Font color string. Color can be string or rgb (or rgba) tuple of
+        floats from 0-1.
+
+    font_weight : string or dictionary of nodes to strings (default='normal')
+        Font weight.
+
+    font_family : string or dictionary of nodes to strings (default='sans-serif')
+        Font family.
+
+    alpha : float or None or dictionary of nodes to floats (default=None)
+        The text transparency.
+
+    bbox : Matplotlib bbox, (default is Matplotlib's ax.text default)
+        Specify text box properties (e.g. shape, color etc.) for node labels.
+
+    horizontalalignment : string or array of strings (default='center')
+        Horizontal alignment {'center', 'right', 'left'}. If an array is
+        specified it must be the same length as `nodelist`.
+
+    verticalalignment : string (default='center')
+        Vertical alignment {'center', 'top', 'bottom', 'baseline', 'center_baseline'}.
+        If an array is specified it must be the same length as `nodelist`.
+
+    ax : Matplotlib Axes object, optional
+        Draw the graph in the specified Matplotlib axes.
+
+    clip_on : bool (default=True)
+        Turn on clipping of node labels at axis boundaries
+
+    hide_ticks : bool, optional
+        Hide ticks of axes. When `True` (the default), ticks and ticklabels
+        are removed from the axes. To set ticks and tick labels to the pyplot default,
+        use ``hide_ticks=False``.
+
+    Returns
+    -------
+    dict
+        `dict` of labels keyed on the nodes
+
+    Examples
+    --------
+    >>> G = nx.dodecahedral_graph()
+    >>> labels = nx.draw_networkx_labels(G, pos=nx.spring_layout(G))
+
+    Also see the NetworkX drawing examples at
+    https://networkx.org/documentation/latest/auto_examples/index.html
+
+    See Also
+    --------
+    draw
+    draw_networkx
+    draw_networkx_nodes
+    draw_networkx_edges
+    draw_networkx_edge_labels
+    """
+    import matplotlib.pyplot as plt
+
+    if ax is None:
+        ax = plt.gca()
+
+    if labels is None:
+        labels = {n: n for n in G.nodes()}
+
+    individual_params = set()
+
+    def check_individual_params(p_value, p_name):
+        if isinstance(p_value, dict):
+            if len(p_value) != len(labels):
+                raise ValueError(f"{p_name} must have the same length as labels.")
+            individual_params.add(p_name)
+
+    def get_param_value(node, p_value, p_name):
+        if p_name in individual_params:
+            return p_value[node]
+        return p_value
+
+    check_individual_params(font_size, "font_size")
+    check_individual_params(font_color, "font_color")
+    check_individual_params(font_weight, "font_weight")
+    check_individual_params(font_family, "font_family")
+    check_individual_params(alpha, "alpha")
+
+    text_items = {}  # there is no text collection so we'll fake one
+    for n, label in labels.items():
+        (x, y) = pos[n]
+        if not isinstance(label, str):
+            label = str(label)  # this makes "1" and 1 labeled the same
+        t = ax.text(
+            x,
+            y,
+            label,
+            size=get_param_value(n, font_size, "font_size"),
+            color=get_param_value(n, font_color, "font_color"),
+            family=get_param_value(n, font_family, "font_family"),
+            weight=get_param_value(n, font_weight, "font_weight"),
+            alpha=get_param_value(n, alpha, "alpha"),
+            horizontalalignment=horizontalalignment,
+            verticalalignment=verticalalignment,
+            transform=ax.transData,
+            bbox=bbox,
+            clip_on=clip_on,
+        )
+        text_items[n] = t
+
+    if hide_ticks:
+        ax.tick_params(
+            axis="both",
+            which="both",
+            bottom=False,
+            left=False,
+            labelbottom=False,
+            labelleft=False,
+        )
+
+    return text_items
+
+
+def draw_networkx_edge_labels(
+    G,
+    pos,
+    edge_labels=None,
+    label_pos=0.5,
+    font_size=10,
+    font_color="k",
+    font_family="sans-serif",
+    font_weight="normal",
+    alpha=None,
+    bbox=None,
+    horizontalalignment="center",
+    verticalalignment="center",
+    ax=None,
+    rotate=True,
+    clip_on=True,
+    node_size=300,
+    nodelist=None,
+    connectionstyle="arc3",
+    hide_ticks=True,
+):
+    """Draw edge labels.
+
+    Parameters
+    ----------
+    G : graph
+        A networkx graph
+
+    pos : dictionary
+        A dictionary with nodes as keys and positions as values.
+        Positions should be sequences of length 2.
+
+    edge_labels : dictionary (default=None)
+        Edge labels in a dictionary of labels keyed by edge two-tuple.
+        Only labels for the keys in the dictionary are drawn.
+
+    label_pos : float (default=0.5)
+        Position of edge label along edge (0=head, 0.5=center, 1=tail)
+
+    font_size : int (default=10)
+        Font size for text labels
+
+    font_color : color (default='k' black)
+        Font color string. Color can be string or rgb (or rgba) tuple of
+        floats from 0-1.
+
+    font_weight : string (default='normal')
+        Font weight
+
+    font_family : string (default='sans-serif')
+        Font family
+
+    alpha : float or None (default=None)
+        The text transparency
+
+    bbox : Matplotlib bbox, optional
+        Specify text box properties (e.g. shape, color etc.) for edge labels.
+        Default is {boxstyle='round', ec=(1.0, 1.0, 1.0), fc=(1.0, 1.0, 1.0)}.
+
+    horizontalalignment : string (default='center')
+        Horizontal alignment {'center', 'right', 'left'}
+
+    verticalalignment : string (default='center')
+        Vertical alignment {'center', 'top', 'bottom', 'baseline', 'center_baseline'}
+
+    ax : Matplotlib Axes object, optional
+        Draw the graph in the specified Matplotlib axes.
+
+    rotate : bool (default=True)
+        Rotate edge labels to lie parallel to edges
+
+    clip_on : bool (default=True)
+        Turn on clipping of edge labels at axis boundaries
+
+    node_size : scalar or array (default=300)
+        Size of nodes.  If an array it must be the same length as nodelist.
+
+    nodelist : list, optional (default=G.nodes())
+       This provides the node order for the `node_size` array (if it is an array).
+
+    connectionstyle : string or iterable of strings (default="arc3")
+        Pass the connectionstyle parameter to create curved arc of rounding
+        radius rad. For example, connectionstyle='arc3,rad=0.2'.
+        See `matplotlib.patches.ConnectionStyle` and
+        `matplotlib.patches.FancyArrowPatch` for more info.
+        If Iterable, index indicates i'th edge key of MultiGraph
+
+    hide_ticks : bool, optional
+        Hide ticks of axes. When `True` (the default), ticks and ticklabels
+        are removed from the axes. To set ticks and tick labels to the pyplot default,
+        use ``hide_ticks=False``.
+
+    Returns
+    -------
+    dict
+        `dict` of labels keyed by edge
+
+    Examples
+    --------
+    >>> G = nx.dodecahedral_graph()
+    >>> edge_labels = nx.draw_networkx_edge_labels(G, pos=nx.spring_layout(G))
+
+    Also see the NetworkX drawing examples at
+    https://networkx.org/documentation/latest/auto_examples/index.html
+
+    See Also
+    --------
+    draw
+    draw_networkx
+    draw_networkx_nodes
+    draw_networkx_edges
+    draw_networkx_labels
+    """
+    import matplotlib as mpl
+    import matplotlib.pyplot as plt
+    import numpy as np
+
+    class CurvedArrowText(mpl.text.Text):
+        def __init__(
+            self,
+            arrow,
+            *args,
+            label_pos=0.5,
+            labels_horizontal=False,
+            ax=None,
+            **kwargs,
+        ):
+            # Bind to FancyArrowPatch
+            self.arrow = arrow
+            # how far along the text should be on the curve,
+            # 0 is at start, 1 is at end etc.
+            self.label_pos = label_pos
+            self.labels_horizontal = labels_horizontal
+            if ax is None:
+                ax = plt.gca()
+            self.ax = ax
+            self.x, self.y, self.angle = self._update_text_pos_angle(arrow)
+
+            # Create text object
+            super().__init__(self.x, self.y, *args, rotation=self.angle, **kwargs)
+            # Bind to axis
+            self.ax.add_artist(self)
+
+        def _get_arrow_path_disp(self, arrow):
+            """
+            This is part of FancyArrowPatch._get_path_in_displaycoord
+            It omits the second part of the method where path is converted
+                to polygon based on width
+            The transform is taken from ax, not the object, as the object
+                has not been added yet, and doesn't have transform
+            """
+            dpi_cor = arrow._dpi_cor
+            # trans_data = arrow.get_transform()
+            trans_data = self.ax.transData
+            if arrow._posA_posB is not None:
+                posA = arrow._convert_xy_units(arrow._posA_posB[0])
+                posB = arrow._convert_xy_units(arrow._posA_posB[1])
+                (posA, posB) = trans_data.transform((posA, posB))
+                _path = arrow.get_connectionstyle()(
+                    posA,
+                    posB,
+                    patchA=arrow.patchA,
+                    patchB=arrow.patchB,
+                    shrinkA=arrow.shrinkA * dpi_cor,
+                    shrinkB=arrow.shrinkB * dpi_cor,
+                )
+            else:
+                _path = trans_data.transform_path(arrow._path_original)
+            # Return is in display coordinates
+            return _path
+
+        def _update_text_pos_angle(self, arrow):
+            # Fractional label position
+            path_disp = self._get_arrow_path_disp(arrow)
+            (x1, y1), (cx, cy), (x2, y2) = path_disp.vertices
+            # Text position at a proportion t along the line in display coords
+            # default is 0.5 so text appears at the halfway point
+            t = self.label_pos
+            tt = 1 - t
+            x = tt**2 * x1 + 2 * t * tt * cx + t**2 * x2
+            y = tt**2 * y1 + 2 * t * tt * cy + t**2 * y2
+            if self.labels_horizontal:
+                # Horizontal text labels
+                angle = 0
+            else:
+                # Labels parallel to curve
+                change_x = 2 * tt * (cx - x1) + 2 * t * (x2 - cx)
+                change_y = 2 * tt * (cy - y1) + 2 * t * (y2 - cy)
+                angle = (np.arctan2(change_y, change_x) / (2 * np.pi)) * 360
+                # Text is "right way up"
+                if angle > 90:
+                    angle -= 180
+                if angle < -90:
+                    angle += 180
+            (x, y) = self.ax.transData.inverted().transform((x, y))
+            return x, y, angle
+
+        def draw(self, renderer):
+            # recalculate the text position and angle
+            self.x, self.y, self.angle = self._update_text_pos_angle(self.arrow)
+            self.set_position((self.x, self.y))
+            self.set_rotation(self.angle)
+            # redraw text
+            super().draw(renderer)
+
+    # use default box of white with white border
+    if bbox is None:
+        bbox = {"boxstyle": "round", "ec": (1.0, 1.0, 1.0), "fc": (1.0, 1.0, 1.0)}
+
+    if isinstance(connectionstyle, str):
+        connectionstyle = [connectionstyle]
+    elif np.iterable(connectionstyle):
+        connectionstyle = list(connectionstyle)
+    else:
+        raise nx.NetworkXError(
+            "draw_networkx_edges arg `connectionstyle` must be"
+            "string or iterable of strings"
+        )
+
+    if ax is None:
+        ax = plt.gca()
+
+    if edge_labels is None:
+        kwds = {"keys": True} if G.is_multigraph() else {}
+        edge_labels = {tuple(edge): d for *edge, d in G.edges(data=True, **kwds)}
+    # NOTHING TO PLOT
+    if not edge_labels:
+        return {}
+    edgelist, labels = zip(*edge_labels.items())
+
+    if nodelist is None:
+        nodelist = list(G.nodes())
+
+    # set edge positions
+    edge_pos = np.asarray([(pos[e[0]], pos[e[1]]) for e in edgelist])
+
+    if G.is_multigraph():
+        key_count = collections.defaultdict(lambda: itertools.count(0))
+        edge_indices = [next(key_count[tuple(e[:2])]) for e in edgelist]
+    else:
+        edge_indices = [0] * len(edgelist)
+
+    # Used to determine self loop mid-point
+    # Note, that this will not be accurate,
+    #   if not drawing edge_labels for all edges drawn
+    h = 0
+    if edge_labels:
+        miny = np.amin(np.ravel(edge_pos[:, :, 1]))
+        maxy = np.amax(np.ravel(edge_pos[:, :, 1]))
+        h = maxy - miny
+    selfloop_height = h if h != 0 else 0.005 * np.array(node_size).max()
+    fancy_arrow_factory = FancyArrowFactory(
+        edge_pos,
+        edgelist,
+        nodelist,
+        edge_indices,
+        node_size,
+        selfloop_height,
+        connectionstyle,
+        ax=ax,
+    )
+
+    individual_params = {}
+
+    def check_individual_params(p_value, p_name):
+        # TODO should this be list or array (as in a numpy array)?
+        if isinstance(p_value, list):
+            if len(p_value) != len(edgelist):
+                raise ValueError(f"{p_name} must have the same length as edgelist.")
+            individual_params[p_name] = p_value.iter()
+
+    # Don't need to pass in an edge because these are lists, not dicts
+    def get_param_value(p_value, p_name):
+        if p_name in individual_params:
+            return next(individual_params[p_name])
+        return p_value
+
+    check_individual_params(font_size, "font_size")
+    check_individual_params(font_color, "font_color")
+    check_individual_params(font_weight, "font_weight")
+    check_individual_params(alpha, "alpha")
+    check_individual_params(horizontalalignment, "horizontalalignment")
+    check_individual_params(verticalalignment, "verticalalignment")
+    check_individual_params(rotate, "rotate")
+    check_individual_params(label_pos, "label_pos")
+
+    text_items = {}
+    for i, (edge, label) in enumerate(zip(edgelist, labels)):
+        if not isinstance(label, str):
+            label = str(label)  # this makes "1" and 1 labeled the same
+
+        n1, n2 = edge[:2]
+        arrow = fancy_arrow_factory(i)
+        if n1 == n2:
+            connectionstyle_obj = arrow.get_connectionstyle()
+            posA = ax.transData.transform(pos[n1])
+            path_disp = connectionstyle_obj(posA, posA)
+            path_data = ax.transData.inverted().transform_path(path_disp)
+            x, y = path_data.vertices[0]
+            text_items[edge] = ax.text(
+                x,
+                y,
+                label,
+                size=get_param_value(font_size, "font_size"),
+                color=get_param_value(font_color, "font_color"),
+                family=get_param_value(font_family, "font_family"),
+                weight=get_param_value(font_weight, "font_weight"),
+                alpha=get_param_value(alpha, "alpha"),
+                horizontalalignment=get_param_value(
+                    horizontalalignment, "horizontalalignment"
+                ),
+                verticalalignment=get_param_value(
+                    verticalalignment, "verticalalignment"
+                ),
+                rotation=0,
+                transform=ax.transData,
+                bbox=bbox,
+                zorder=1,
+                clip_on=clip_on,
+            )
+        else:
+            text_items[edge] = CurvedArrowText(
+                arrow,
+                label,
+                size=get_param_value(font_size, "font_size"),
+                color=get_param_value(font_color, "font_color"),
+                family=get_param_value(font_family, "font_family"),
+                weight=get_param_value(font_weight, "font_weight"),
+                alpha=get_param_value(alpha, "alpha"),
+                horizontalalignment=get_param_value(
+                    horizontalalignment, "horizontalalignment"
+                ),
+                verticalalignment=get_param_value(
+                    verticalalignment, "verticalalignment"
+                ),
+                transform=ax.transData,
+                bbox=bbox,
+                zorder=1,
+                clip_on=clip_on,
+                label_pos=get_param_value(label_pos, "label_pos"),
+                labels_horizontal=not get_param_value(rotate, "rotate"),
+                ax=ax,
+            )
+
+    if hide_ticks:
+        ax.tick_params(
+            axis="both",
+            which="both",
+            bottom=False,
+            left=False,
+            labelbottom=False,
+            labelleft=False,
+        )
+
+    return text_items
+
+
+def draw_circular(G, **kwargs):
+    """Draw the graph `G` with a circular layout.
+
+    This is a convenience function equivalent to::
+
+        nx.draw(G, pos=nx.circular_layout(G), **kwargs)
+
+    Parameters
+    ----------
+    G : graph
+        A networkx graph
+
+    kwargs : optional keywords
+        See `draw_networkx` for a description of optional keywords.
+
+    Notes
+    -----
+    The layout is computed each time this function is called. For
+    repeated drawing it is much more efficient to call
+    `~networkx.drawing.layout.circular_layout` directly and reuse the result::
+
+        >>> G = nx.complete_graph(5)
+        >>> pos = nx.circular_layout(G)
+        >>> nx.draw(G, pos=pos)  # Draw the original graph
+        >>> # Draw a subgraph, reusing the same node positions
+        >>> nx.draw(G.subgraph([0, 1, 2]), pos=pos, node_color="red")
+
+    Examples
+    --------
+    >>> G = nx.path_graph(5)
+    >>> nx.draw_circular(G)
+
+    See Also
+    --------
+    :func:`~networkx.drawing.layout.circular_layout`
+    """
+    draw(G, circular_layout(G), **kwargs)
+
+
+def draw_kamada_kawai(G, **kwargs):
+    """Draw the graph `G` with a Kamada-Kawai force-directed layout.
+
+    This is a convenience function equivalent to::
+
+        nx.draw(G, pos=nx.kamada_kawai_layout(G), **kwargs)
+
+    Parameters
+    ----------
+    G : graph
+        A networkx graph
+
+    kwargs : optional keywords
+        See `draw_networkx` for a description of optional keywords.
+
+    Notes
+    -----
+    The layout is computed each time this function is called.
+    For repeated drawing it is much more efficient to call
+    `~networkx.drawing.layout.kamada_kawai_layout` directly and reuse the
+    result::
+
+        >>> G = nx.complete_graph(5)
+        >>> pos = nx.kamada_kawai_layout(G)
+        >>> nx.draw(G, pos=pos)  # Draw the original graph
+        >>> # Draw a subgraph, reusing the same node positions
+        >>> nx.draw(G.subgraph([0, 1, 2]), pos=pos, node_color="red")
+
+    Examples
+    --------
+    >>> G = nx.path_graph(5)
+    >>> nx.draw_kamada_kawai(G)
+
+    See Also
+    --------
+    :func:`~networkx.drawing.layout.kamada_kawai_layout`
+    """
+    draw(G, kamada_kawai_layout(G), **kwargs)
+
+
+def draw_random(G, **kwargs):
+    """Draw the graph `G` with a random layout.
+
+    This is a convenience function equivalent to::
+
+        nx.draw(G, pos=nx.random_layout(G), **kwargs)
+
+    Parameters
+    ----------
+    G : graph
+        A networkx graph
+
+    kwargs : optional keywords
+        See `draw_networkx` for a description of optional keywords.
+
+    Notes
+    -----
+    The layout is computed each time this function is called.
+    For repeated drawing it is much more efficient to call
+    `~networkx.drawing.layout.random_layout` directly and reuse the result::
+
+        >>> G = nx.complete_graph(5)
+        >>> pos = nx.random_layout(G)
+        >>> nx.draw(G, pos=pos)  # Draw the original graph
+        >>> # Draw a subgraph, reusing the same node positions
+        >>> nx.draw(G.subgraph([0, 1, 2]), pos=pos, node_color="red")
+
+    Examples
+    --------
+    >>> G = nx.lollipop_graph(4, 3)
+    >>> nx.draw_random(G)
+
+    See Also
+    --------
+    :func:`~networkx.drawing.layout.random_layout`
+    """
+    draw(G, random_layout(G), **kwargs)
+
+
+def draw_spectral(G, **kwargs):
+    """Draw the graph `G` with a spectral 2D layout.
+
+    This is a convenience function equivalent to::
+
+        nx.draw(G, pos=nx.spectral_layout(G), **kwargs)
+
+    For more information about how node positions are determined, see
+    `~networkx.drawing.layout.spectral_layout`.
+
+    Parameters
+    ----------
+    G : graph
+        A networkx graph
+
+    kwargs : optional keywords
+        See `draw_networkx` for a description of optional keywords.
+
+    Notes
+    -----
+    The layout is computed each time this function is called.
+    For repeated drawing it is much more efficient to call
+    `~networkx.drawing.layout.spectral_layout` directly and reuse the result::
+
+        >>> G = nx.complete_graph(5)
+        >>> pos = nx.spectral_layout(G)
+        >>> nx.draw(G, pos=pos)  # Draw the original graph
+        >>> # Draw a subgraph, reusing the same node positions
+        >>> nx.draw(G.subgraph([0, 1, 2]), pos=pos, node_color="red")
+
+    Examples
+    --------
+    >>> G = nx.path_graph(5)
+    >>> nx.draw_spectral(G)
+
+    See Also
+    --------
+    :func:`~networkx.drawing.layout.spectral_layout`
+    """
+    draw(G, spectral_layout(G), **kwargs)
+
+
+def draw_spring(G, **kwargs):
+    """Draw the graph `G` with a spring layout.
+
+    This is a convenience function equivalent to::
+
+        nx.draw(G, pos=nx.spring_layout(G), **kwargs)
+
+    Parameters
+    ----------
+    G : graph
+        A networkx graph
+
+    kwargs : optional keywords
+        See `draw_networkx` for a description of optional keywords.
+
+    Notes
+    -----
+    `~networkx.drawing.layout.spring_layout` is also the default layout for
+    `draw`, so this function is equivalent to `draw`.
+
+    The layout is computed each time this function is called.
+    For repeated drawing it is much more efficient to call
+    `~networkx.drawing.layout.spring_layout` directly and reuse the result::
+
+        >>> G = nx.complete_graph(5)
+        >>> pos = nx.spring_layout(G)
+        >>> nx.draw(G, pos=pos)  # Draw the original graph
+        >>> # Draw a subgraph, reusing the same node positions
+        >>> nx.draw(G.subgraph([0, 1, 2]), pos=pos, node_color="red")
+
+    Examples
+    --------
+    >>> G = nx.path_graph(20)
+    >>> nx.draw_spring(G)
+
+    See Also
+    --------
+    draw
+    :func:`~networkx.drawing.layout.spring_layout`
+    """
+    draw(G, spring_layout(G), **kwargs)
+
+
+def draw_shell(G, nlist=None, **kwargs):
+    """Draw networkx graph `G` with shell layout.
+
+    This is a convenience function equivalent to::
+
+        nx.draw(G, pos=nx.shell_layout(G, nlist=nlist), **kwargs)
+
+    Parameters
+    ----------
+    G : graph
+        A networkx graph
+
+    nlist : list of list of nodes, optional
+        A list containing lists of nodes representing the shells.
+        Default is `None`, meaning all nodes are in a single shell.
+        See `~networkx.drawing.layout.shell_layout` for details.
+
+    kwargs : optional keywords
+        See `draw_networkx` for a description of optional keywords.
+
+    Notes
+    -----
+    The layout is computed each time this function is called.
+    For repeated drawing it is much more efficient to call
+    `~networkx.drawing.layout.shell_layout` directly and reuse the result::
+
+        >>> G = nx.complete_graph(5)
+        >>> pos = nx.shell_layout(G)
+        >>> nx.draw(G, pos=pos)  # Draw the original graph
+        >>> # Draw a subgraph, reusing the same node positions
+        >>> nx.draw(G.subgraph([0, 1, 2]), pos=pos, node_color="red")
+
+    Examples
+    --------
+    >>> G = nx.path_graph(4)
+    >>> shells = [[0], [1, 2, 3]]
+    >>> nx.draw_shell(G, nlist=shells)
+
+    See Also
+    --------
+    :func:`~networkx.drawing.layout.shell_layout`
+    """
+    draw(G, shell_layout(G, nlist=nlist), **kwargs)
+
+
+def draw_planar(G, **kwargs):
+    """Draw a planar networkx graph `G` with planar layout.
+
+    This is a convenience function equivalent to::
+
+        nx.draw(G, pos=nx.planar_layout(G), **kwargs)
+
+    Parameters
+    ----------
+    G : graph
+        A planar networkx graph
+
+    kwargs : optional keywords
+        See `draw_networkx` for a description of optional keywords.
+
+    Raises
+    ------
+    NetworkXException
+        When `G` is not planar
+
+    Notes
+    -----
+    The layout is computed each time this function is called.
+    For repeated drawing it is much more efficient to call
+    `~networkx.drawing.layout.planar_layout` directly and reuse the result::
+
+        >>> G = nx.path_graph(5)
+        >>> pos = nx.planar_layout(G)
+        >>> nx.draw(G, pos=pos)  # Draw the original graph
+        >>> # Draw a subgraph, reusing the same node positions
+        >>> nx.draw(G.subgraph([0, 1, 2]), pos=pos, node_color="red")
+
+    Examples
+    --------
+    >>> G = nx.path_graph(4)
+    >>> nx.draw_planar(G)
+
+    See Also
+    --------
+    :func:`~networkx.drawing.layout.planar_layout`
+    """
+    draw(G, planar_layout(G), **kwargs)
+
+
+def draw_forceatlas2(G, **kwargs):
+    """Draw a networkx graph with forceatlas2 layout.
+
+    This is a convenience function equivalent to::
+
+       nx.draw(G, pos=nx.forceatlas2_layout(G), **kwargs)
+
+    Parameters
+    ----------
+    G : graph
+       A networkx graph
+
+    kwargs : optional keywords
+       See networkx.draw_networkx() for a description of optional keywords,
+       with the exception of the pos parameter which is not used by this
+       function.
+    """
+    draw(G, forceatlas2_layout(G), **kwargs)
+
+
+def apply_alpha(colors, alpha, elem_list, cmap=None, vmin=None, vmax=None):
+    """Apply an alpha (or list of alphas) to the colors provided.
+
+    Parameters
+    ----------
+
+    colors : color string or array of floats (default='r')
+        Color of element. Can be a single color format string,
+        or a sequence of colors with the same length as nodelist.
+        If numeric values are specified they will be mapped to
+        colors using the cmap and vmin,vmax parameters.  See
+        matplotlib.scatter for more details.
+
+    alpha : float or array of floats
+        Alpha values for elements. This can be a single alpha value, in
+        which case it will be applied to all the elements of color. Otherwise,
+        if it is an array, the elements of alpha will be applied to the colors
+        in order (cycling through alpha multiple times if necessary).
+
+    elem_list : array of networkx objects
+        The list of elements which are being colored. These could be nodes,
+        edges or labels.
+
+    cmap : matplotlib colormap
+        Color map for use if colors is a list of floats corresponding to points
+        on a color mapping.
+
+    vmin, vmax : float
+        Minimum and maximum values for normalizing colors if a colormap is used
+
+    Returns
+    -------
+
+    rgba_colors : numpy ndarray
+        Array containing RGBA format values for each of the node colours.
+
+    """
+    from itertools import cycle, islice
+
+    import matplotlib as mpl
+    import matplotlib.cm  # call as mpl.cm
+    import matplotlib.colors  # call as mpl.colors
+    import numpy as np
+
+    # If we have been provided with a list of numbers as long as elem_list,
+    # apply the color mapping.
+    if len(colors) == len(elem_list) and isinstance(colors[0], Number):
+        mapper = mpl.cm.ScalarMappable(cmap=cmap)
+        mapper.set_clim(vmin, vmax)
+        rgba_colors = mapper.to_rgba(colors)
+    # Otherwise, convert colors to matplotlib's RGB using the colorConverter
+    # object.  These are converted to numpy ndarrays to be consistent with the
+    # to_rgba method of ScalarMappable.
+    else:
+        try:
+            rgba_colors = np.array([mpl.colors.colorConverter.to_rgba(colors)])
+        except ValueError:
+            rgba_colors = np.array(
+                [mpl.colors.colorConverter.to_rgba(color) for color in colors]
+            )
+    # Set the final column of the rgba_colors to have the relevant alpha values
+    try:
+        # If alpha is longer than the number of colors, resize to the number of
+        # elements.  Also, if rgba_colors.size (the number of elements of
+        # rgba_colors) is the same as the number of elements, resize the array,
+        # to avoid it being interpreted as a colormap by scatter()
+        if len(alpha) > len(rgba_colors) or rgba_colors.size == len(elem_list):
+            rgba_colors = np.resize(rgba_colors, (len(elem_list), 4))
+            rgba_colors[1:, 0] = rgba_colors[0, 0]
+            rgba_colors[1:, 1] = rgba_colors[0, 1]
+            rgba_colors[1:, 2] = rgba_colors[0, 2]
+        rgba_colors[:, 3] = list(islice(cycle(alpha), len(rgba_colors)))
+    except TypeError:
+        rgba_colors[:, -1] = alpha
+    return rgba_colors

wemm/lib/python3.10/site-packages/networkx/drawing/tests/test_agraph.py

@@ -0,0 +1,241 @@
+"""Unit tests for PyGraphviz interface."""
+
+import warnings
+
+import pytest
+
+pygraphviz = pytest.importorskip("pygraphviz")
+
+
+import networkx as nx
+from networkx.utils import edges_equal, graphs_equal, nodes_equal
+
+
+class TestAGraph:
+    def build_graph(self, G):
+        edges = [("A", "B"), ("A", "C"), ("A", "C"), ("B", "C"), ("A", "D")]
+        G.add_edges_from(edges)
+        G.add_node("E")
+        G.graph["metal"] = "bronze"
+        return G
+
+    def assert_equal(self, G1, G2):
+        assert nodes_equal(G1.nodes(), G2.nodes())
+        assert edges_equal(G1.edges(), G2.edges())
+        assert G1.graph["metal"] == G2.graph["metal"]
+
+    @pytest.mark.parametrize(
+        "G", (nx.Graph(), nx.DiGraph(), nx.MultiGraph(), nx.MultiDiGraph())
+    )
+    def test_agraph_roundtripping(self, G, tmp_path):
+        G = self.build_graph(G)
+        A = nx.nx_agraph.to_agraph(G)
+        H = nx.nx_agraph.from_agraph(A)
+        self.assert_equal(G, H)
+
+        fname = tmp_path / "test.dot"
+        nx.drawing.nx_agraph.write_dot(H, fname)
+        Hin = nx.nx_agraph.read_dot(fname)
+        self.assert_equal(H, Hin)
+
+        fname = tmp_path / "fh_test.dot"
+        with open(fname, "w") as fh:
+            nx.drawing.nx_agraph.write_dot(H, fh)
+
+        with open(fname) as fh:
+            Hin = nx.nx_agraph.read_dot(fh)
+        self.assert_equal(H, Hin)
+
+    def test_from_agraph_name(self):
+        G = nx.Graph(name="test")
+        A = nx.nx_agraph.to_agraph(G)
+        H = nx.nx_agraph.from_agraph(A)
+        assert G.name == "test"
+
+    @pytest.mark.parametrize(
+        "graph_class", (nx.Graph, nx.DiGraph, nx.MultiGraph, nx.MultiDiGraph)
+    )
+    def test_from_agraph_create_using(self, graph_class):
+        G = nx.path_graph(3)
+        A = nx.nx_agraph.to_agraph(G)
+        H = nx.nx_agraph.from_agraph(A, create_using=graph_class)
+        assert isinstance(H, graph_class)
+
+    def test_from_agraph_named_edges(self):
+        # Create an AGraph from an existing (non-multi) Graph
+        G = nx.Graph()
+        G.add_nodes_from([0, 1])
+        A = nx.nx_agraph.to_agraph(G)
+        # Add edge (+ name, given by key) to the AGraph
+        A.add_edge(0, 1, key="foo")
+        # Verify a.name roundtrips out to 'key' in from_agraph
+        H = nx.nx_agraph.from_agraph(A)
+        assert isinstance(H, nx.Graph)
+        assert ("0", "1", {"key": "foo"}) in H.edges(data=True)
+
+    def test_to_agraph_with_nodedata(self):
+        G = nx.Graph()
+        G.add_node(1, color="red")
+        A = nx.nx_agraph.to_agraph(G)
+        assert dict(A.nodes()[0].attr) == {"color": "red"}
+
+    @pytest.mark.parametrize("graph_class", (nx.Graph, nx.MultiGraph))
+    def test_to_agraph_with_edgedata(self, graph_class):
+        G = graph_class()
+        G.add_nodes_from([0, 1])
+        G.add_edge(0, 1, color="yellow")
+        A = nx.nx_agraph.to_agraph(G)
+        assert dict(A.edges()[0].attr) == {"color": "yellow"}
+
+    def test_view_pygraphviz_path(self, tmp_path):
+        G = nx.complete_graph(3)
+        input_path = str(tmp_path / "graph.png")
+        out_path, A = nx.nx_agraph.view_pygraphviz(G, path=input_path, show=False)
+        assert out_path == input_path
+        # Ensure file is not empty
+        with open(input_path, "rb") as fh:
+            data = fh.read()
+        assert len(data) > 0
+
+    def test_view_pygraphviz_file_suffix(self, tmp_path):
+        G = nx.complete_graph(3)
+        path, A = nx.nx_agraph.view_pygraphviz(G, suffix=1, show=False)
+        assert path[-6:] == "_1.png"
+
+    def test_view_pygraphviz(self):
+        G = nx.Graph()  # "An empty graph cannot be drawn."
+        pytest.raises(nx.NetworkXException, nx.nx_agraph.view_pygraphviz, G)
+        G = nx.barbell_graph(4, 6)
+        nx.nx_agraph.view_pygraphviz(G, show=False)
+
+    def test_view_pygraphviz_edgelabel(self):
+        G = nx.Graph()
+        G.add_edge(1, 2, weight=7)
+        G.add_edge(2, 3, weight=8)
+        path, A = nx.nx_agraph.view_pygraphviz(G, edgelabel="weight", show=False)
+        for edge in A.edges():
+            assert edge.attr["weight"] in ("7", "8")
+
+    def test_view_pygraphviz_callable_edgelabel(self):
+        G = nx.complete_graph(3)
+
+        def foo_label(data):
+            return "foo"
+
+        path, A = nx.nx_agraph.view_pygraphviz(G, edgelabel=foo_label, show=False)
+        for edge in A.edges():
+            assert edge.attr["label"] == "foo"
+
+    def test_view_pygraphviz_multigraph_edgelabels(self):
+        G = nx.MultiGraph()
+        G.add_edge(0, 1, key=0, name="left_fork")
+        G.add_edge(0, 1, key=1, name="right_fork")
+        path, A = nx.nx_agraph.view_pygraphviz(G, edgelabel="name", show=False)
+        edges = A.edges()
+        assert len(edges) == 2
+        for edge in edges:
+            assert edge.attr["label"].strip() in ("left_fork", "right_fork")
+
+    def test_graph_with_reserved_keywords(self):
+        # test attribute/keyword clash case for #1582
+        # node: n
+        # edges: u,v
+        G = nx.Graph()
+        G = self.build_graph(G)
+        G.nodes["E"]["n"] = "keyword"
+        G.edges[("A", "B")]["u"] = "keyword"
+        G.edges[("A", "B")]["v"] = "keyword"
+        A = nx.nx_agraph.to_agraph(G)
+
+    def test_view_pygraphviz_no_added_attrs_to_input(self):
+        G = nx.complete_graph(2)
+        path, A = nx.nx_agraph.view_pygraphviz(G, show=False)
+        assert G.graph == {}
+
+    @pytest.mark.xfail(reason="known bug in clean_attrs")
+    def test_view_pygraphviz_leaves_input_graph_unmodified(self):
+        G = nx.complete_graph(2)
+        # Add entries to graph dict that to_agraph handles specially
+        G.graph["node"] = {"width": "0.80"}
+        G.graph["edge"] = {"fontsize": "14"}
+        path, A = nx.nx_agraph.view_pygraphviz(G, show=False)
+        assert G.graph == {"node": {"width": "0.80"}, "edge": {"fontsize": "14"}}
+
+    def test_graph_with_AGraph_attrs(self):
+        G = nx.complete_graph(2)
+        # Add entries to graph dict that to_agraph handles specially
+        G.graph["node"] = {"width": "0.80"}
+        G.graph["edge"] = {"fontsize": "14"}
+        path, A = nx.nx_agraph.view_pygraphviz(G, show=False)
+        # Ensure user-specified values are not lost
+        assert dict(A.node_attr)["width"] == "0.80"
+        assert dict(A.edge_attr)["fontsize"] == "14"
+
+    def test_round_trip_empty_graph(self):
+        G = nx.Graph()
+        A = nx.nx_agraph.to_agraph(G)
+        H = nx.nx_agraph.from_agraph(A)
+        # assert graphs_equal(G, H)
+        AA = nx.nx_agraph.to_agraph(H)
+        HH = nx.nx_agraph.from_agraph(AA)
+        assert graphs_equal(H, HH)
+        G.graph["graph"] = {}
+        G.graph["node"] = {}
+        G.graph["edge"] = {}
+        assert graphs_equal(G, HH)
+
+    @pytest.mark.xfail(reason="integer->string node conversion in round trip")
+    def test_round_trip_integer_nodes(self):
+        G = nx.complete_graph(3)
+        A = nx.nx_agraph.to_agraph(G)
+        H = nx.nx_agraph.from_agraph(A)
+        assert graphs_equal(G, H)
+
+    def test_graphviz_alias(self):
+        G = self.build_graph(nx.Graph())
+        pos_graphviz = nx.nx_agraph.graphviz_layout(G)
+        pos_pygraphviz = nx.nx_agraph.pygraphviz_layout(G)
+        assert pos_graphviz == pos_pygraphviz
+
+    @pytest.mark.parametrize("root", range(5))
+    def test_pygraphviz_layout_root(self, root):
+        # NOTE: test depends on layout prog being deterministic
+        G = nx.complete_graph(5)
+        A = nx.nx_agraph.to_agraph(G)
+        # Get layout with root arg is not None
+        pygv_layout = nx.nx_agraph.pygraphviz_layout(G, prog="circo", root=root)
+        # Equivalent layout directly on AGraph
+        A.layout(args=f"-Groot={root}", prog="circo")
+        # Parse AGraph layout
+        a1_pos = tuple(float(v) for v in dict(A.get_node("1").attr)["pos"].split(","))
+        assert pygv_layout[1] == a1_pos
+
+    def test_2d_layout(self):
+        G = nx.Graph()
+        G = self.build_graph(G)
+        G.graph["dimen"] = 2
+        pos = nx.nx_agraph.pygraphviz_layout(G, prog="neato")
+        pos = list(pos.values())
+        assert len(pos) == 5
+        assert len(pos[0]) == 2
+
+    def test_3d_layout(self):
+        G = nx.Graph()
+        G = self.build_graph(G)
+        G.graph["dimen"] = 3
+        pos = nx.nx_agraph.pygraphviz_layout(G, prog="neato")
+        pos = list(pos.values())
+        assert len(pos) == 5
+        assert len(pos[0]) == 3
+
+    def test_no_warnings_raised(self):
+        # Test that no warnings are raised when Networkx graph
+        # is converted to Pygraphviz graph and 'pos'
+        # attribute is given
+        G = nx.Graph()
+        G.add_node(0, pos=(0, 0))
+        G.add_node(1, pos=(1, 1))
+        A = nx.nx_agraph.to_agraph(G)
+        with warnings.catch_warnings(record=True) as record:
+            A.layout()
+        assert len(record) == 0

wemm/lib/python3.10/site-packages/networkx/drawing/tests/test_pydot.py

@@ -0,0 +1,146 @@
+"""Unit tests for pydot drawing functions."""
+
+from io import StringIO
+
+import pytest
+
+import networkx as nx
+from networkx.utils import graphs_equal
+
+pydot = pytest.importorskip("pydot")
+
+
+class TestPydot:
+    @pytest.mark.parametrize("G", (nx.Graph(), nx.DiGraph()))
+    @pytest.mark.parametrize("prog", ("neato", "dot"))
+    def test_pydot(self, G, prog, tmp_path):
+        """
+        Validate :mod:`pydot`-based usage of the passed NetworkX graph with the
+        passed basename of an external GraphViz command (e.g., `dot`, `neato`).
+        """
+
+        # Set the name of this graph to... "G". Failing to do so will
+        # subsequently trip an assertion expecting this name.
+        G.graph["name"] = "G"
+
+        # Add arbitrary nodes and edges to the passed empty graph.
+        G.add_edges_from([("A", "B"), ("A", "C"), ("B", "C"), ("A", "D")])
+        G.add_node("E")
+
+        # Validate layout of this graph with the passed GraphViz command.
+        graph_layout = nx.nx_pydot.pydot_layout(G, prog=prog)
+        assert isinstance(graph_layout, dict)
+
+        # Convert this graph into a "pydot.Dot" instance.
+        P = nx.nx_pydot.to_pydot(G)
+
+        # Convert this "pydot.Dot" instance back into a graph of the same type.
+        G2 = G.__class__(nx.nx_pydot.from_pydot(P))
+
+        # Validate the original and resulting graphs to be the same.
+        assert graphs_equal(G, G2)
+
+        fname = tmp_path / "out.dot"
+
+        # Serialize this "pydot.Dot" instance to a temporary file in dot format
+        P.write_raw(fname)
+
+        # Deserialize a list of new "pydot.Dot" instances back from this file.
+        Pin_list = pydot.graph_from_dot_file(path=fname, encoding="utf-8")
+
+        # Validate this file to contain only one graph.
+        assert len(Pin_list) == 1
+
+        # The single "pydot.Dot" instance deserialized from this file.
+        Pin = Pin_list[0]
+
+        # Sorted list of all nodes in the original "pydot.Dot" instance.
+        n1 = sorted(p.get_name() for p in P.get_node_list())
+
+        # Sorted list of all nodes in the deserialized "pydot.Dot" instance.
+        n2 = sorted(p.get_name() for p in Pin.get_node_list())
+
+        # Validate these instances to contain the same nodes.
+        assert n1 == n2
+
+        # Sorted list of all edges in the original "pydot.Dot" instance.
+        e1 = sorted((e.get_source(), e.get_destination()) for e in P.get_edge_list())
+
+        # Sorted list of all edges in the original "pydot.Dot" instance.
+        e2 = sorted((e.get_source(), e.get_destination()) for e in Pin.get_edge_list())
+
+        # Validate these instances to contain the same edges.
+        assert e1 == e2
+
+        # Deserialize a new graph of the same type back from this file.
+        Hin = nx.nx_pydot.read_dot(fname)
+        Hin = G.__class__(Hin)
+
+        # Validate the original and resulting graphs to be the same.
+        assert graphs_equal(G, Hin)
+
+    def test_read_write(self):
+        G = nx.MultiGraph()
+        G.graph["name"] = "G"
+        G.add_edge("1", "2", key="0")  # read assumes strings
+        fh = StringIO()
+        nx.nx_pydot.write_dot(G, fh)
+        fh.seek(0)
+        H = nx.nx_pydot.read_dot(fh)
+        assert graphs_equal(G, H)
+
+
+def test_pydot_issue_7581(tmp_path):
+    """Validate that `nx_pydot.pydot_layout` handles nodes
+    with characters like "\n", " ".
+
+    Those characters cause `pydot` to escape and quote them on output,
+    which caused #7581.
+    """
+    G = nx.Graph()
+    G.add_edges_from([("A\nbig test", "B"), ("A\nbig test", "C"), ("B", "C")])
+
+    graph_layout = nx.nx_pydot.pydot_layout(G, prog="dot")
+    assert isinstance(graph_layout, dict)
+
+    # Convert the graph to pydot and back into a graph. There should be no difference.
+    P = nx.nx_pydot.to_pydot(G)
+    G2 = nx.Graph(nx.nx_pydot.from_pydot(P))
+    assert graphs_equal(G, G2)
+
+
+@pytest.mark.parametrize(
+    "graph_type", [nx.Graph, nx.DiGraph, nx.MultiGraph, nx.MultiDiGraph]
+)
+def test_hashable_pydot(graph_type):
+    # gh-5790
+    G = graph_type()
+    G.add_edge("5", frozenset([1]), t='"Example:A"', l=False)
+    G.add_edge("1", 2, w=True, t=("node1",), l=frozenset(["node1"]))
+    G.add_edge("node", (3, 3), w="string")
+
+    assert [
+        {"t": '"Example:A"', "l": "False"},
+        {"w": "True", "t": "('node1',)", "l": "frozenset({'node1'})"},
+        {"w": "string"},
+    ] == [
+        attr
+        for _, _, attr in nx.nx_pydot.from_pydot(nx.nx_pydot.to_pydot(G)).edges.data()
+    ]
+
+    assert {str(i) for i in G.nodes()} == set(
+        nx.nx_pydot.from_pydot(nx.nx_pydot.to_pydot(G)).nodes
+    )
+
+
+def test_pydot_numerical_name():
+    G = nx.Graph()
+    G.add_edges_from([("A", "B"), (0, 1)])
+    graph_layout = nx.nx_pydot.pydot_layout(G, prog="dot")
+    assert isinstance(graph_layout, dict)
+    assert "0" not in graph_layout
+    assert 0 in graph_layout
+    assert "1" not in graph_layout
+    assert 1 in graph_layout
+    assert "A" in graph_layout
+    assert "B" in graph_layout

wemm/lib/python3.10/site-packages/networkx/drawing/tests/test_pylab.py

@@ -0,0 +1,1029 @@
+"""Unit tests for matplotlib drawing functions."""
+
+import itertools
+import os
+import warnings
+
+import pytest
+
+mpl = pytest.importorskip("matplotlib")
+np = pytest.importorskip("numpy")
+mpl.use("PS")
+plt = pytest.importorskip("matplotlib.pyplot")
+plt.rcParams["text.usetex"] = False
+
+
+import networkx as nx
+
+barbell = nx.barbell_graph(4, 6)
+
+
+def test_draw():
+    try:
+        functions = [
+            nx.draw_circular,
+            nx.draw_kamada_kawai,
+            nx.draw_planar,
+            nx.draw_random,
+            nx.draw_spectral,
+            nx.draw_spring,
+            nx.draw_shell,
+        ]
+        options = [{"node_color": "black", "node_size": 100, "width": 3}]
+        for function, option in itertools.product(functions, options):
+            function(barbell, **option)
+            plt.savefig("test.ps")
+    except ModuleNotFoundError:  # draw_kamada_kawai requires scipy
+        pass
+    finally:
+        try:
+            os.unlink("test.ps")
+        except OSError:
+            pass
+
+
+def test_draw_shell_nlist():
+    try:
+        nlist = [list(range(4)), list(range(4, 10)), list(range(10, 14))]
+        nx.draw_shell(barbell, nlist=nlist)
+        plt.savefig("test.ps")
+    finally:
+        try:
+            os.unlink("test.ps")
+        except OSError:
+            pass
+
+
+def test_edge_colormap():
+    colors = range(barbell.number_of_edges())
+    nx.draw_spring(
+        barbell, edge_color=colors, width=4, edge_cmap=plt.cm.Blues, with_labels=True
+    )
+    # plt.show()
+
+
+def test_arrows():
+    nx.draw_spring(barbell.to_directed())
+    # plt.show()
+
+
+@pytest.mark.parametrize(
+    ("edge_color", "expected"),
+    (
+        (None, "black"),  # Default
+        ("r", "red"),  # Non-default color string
+        (["r"], "red"),  # Single non-default color in a list
+        ((1.0, 1.0, 0.0), "yellow"),  # single color as rgb tuple
+        ([(1.0, 1.0, 0.0)], "yellow"),  # single color as rgb tuple in list
+        ((0, 1, 0, 1), "lime"),  # single color as rgba tuple
+        ([(0, 1, 0, 1)], "lime"),  # single color as rgba tuple in list
+        ("#0000ff", "blue"),  # single color hex code
+        (["#0000ff"], "blue"),  # hex code in list
+    ),
+)
+@pytest.mark.parametrize("edgelist", (None, [(0, 1)]))
+def test_single_edge_color_undirected(edge_color, expected, edgelist):
+    """Tests ways of specifying all edges have a single color for edges
+    drawn with a LineCollection"""
+
+    G = nx.path_graph(3)
+    drawn_edges = nx.draw_networkx_edges(
+        G, pos=nx.random_layout(G), edgelist=edgelist, edge_color=edge_color
+    )
+    assert mpl.colors.same_color(drawn_edges.get_color(), expected)
+
+
+@pytest.mark.parametrize(
+    ("edge_color", "expected"),
+    (
+        (None, "black"),  # Default
+        ("r", "red"),  # Non-default color string
+        (["r"], "red"),  # Single non-default color in a list
+        ((1.0, 1.0, 0.0), "yellow"),  # single color as rgb tuple
+        ([(1.0, 1.0, 0.0)], "yellow"),  # single color as rgb tuple in list
+        ((0, 1, 0, 1), "lime"),  # single color as rgba tuple
+        ([(0, 1, 0, 1)], "lime"),  # single color as rgba tuple in list
+        ("#0000ff", "blue"),  # single color hex code
+        (["#0000ff"], "blue"),  # hex code in list
+    ),
+)
+@pytest.mark.parametrize("edgelist", (None, [(0, 1)]))
+def test_single_edge_color_directed(edge_color, expected, edgelist):
+    """Tests ways of specifying all edges have a single color for edges drawn
+    with FancyArrowPatches"""
+
+    G = nx.path_graph(3, create_using=nx.DiGraph)
+    drawn_edges = nx.draw_networkx_edges(
+        G, pos=nx.random_layout(G), edgelist=edgelist, edge_color=edge_color
+    )
+    for fap in drawn_edges:
+        assert mpl.colors.same_color(fap.get_edgecolor(), expected)
+
+
+def test_edge_color_tuple_interpretation():
+    """If edge_color is a sequence with the same length as edgelist, then each
+    value in edge_color is mapped onto each edge via colormap."""
+    G = nx.path_graph(6, create_using=nx.DiGraph)
+    pos = {n: (n, n) for n in range(len(G))}
+
+    # num edges != 3 or 4 --> edge_color interpreted as rgb(a)
+    for ec in ((0, 0, 1), (0, 0, 1, 1)):
+        # More than 4 edges
+        drawn_edges = nx.draw_networkx_edges(G, pos, edge_color=ec)
+        for fap in drawn_edges:
+            assert mpl.colors.same_color(fap.get_edgecolor(), ec)
+        # Fewer than 3 edges
+        drawn_edges = nx.draw_networkx_edges(
+            G, pos, edgelist=[(0, 1), (1, 2)], edge_color=ec
+        )
+        for fap in drawn_edges:
+            assert mpl.colors.same_color(fap.get_edgecolor(), ec)
+
+    # num edges == 3, len(edge_color) == 4: interpreted as rgba
+    drawn_edges = nx.draw_networkx_edges(
+        G, pos, edgelist=[(0, 1), (1, 2), (2, 3)], edge_color=(0, 0, 1, 1)
+    )
+    for fap in drawn_edges:
+        assert mpl.colors.same_color(fap.get_edgecolor(), "blue")
+
+    # num edges == 4, len(edge_color) == 3: interpreted as rgb
+    drawn_edges = nx.draw_networkx_edges(
+        G, pos, edgelist=[(0, 1), (1, 2), (2, 3), (3, 4)], edge_color=(0, 0, 1)
+    )
+    for fap in drawn_edges:
+        assert mpl.colors.same_color(fap.get_edgecolor(), "blue")
+
+    # num edges == len(edge_color) == 3: interpreted with cmap, *not* as rgb
+    drawn_edges = nx.draw_networkx_edges(
+        G, pos, edgelist=[(0, 1), (1, 2), (2, 3)], edge_color=(0, 0, 1)
+    )
+    assert mpl.colors.same_color(
+        drawn_edges[0].get_edgecolor(), drawn_edges[1].get_edgecolor()
+    )
+    for fap in drawn_edges:
+        assert not mpl.colors.same_color(fap.get_edgecolor(), "blue")
+
+    # num edges == len(edge_color) == 4: interpreted with cmap, *not* as rgba
+    drawn_edges = nx.draw_networkx_edges(
+        G, pos, edgelist=[(0, 1), (1, 2), (2, 3), (3, 4)], edge_color=(0, 0, 1, 1)
+    )
+    assert mpl.colors.same_color(
+        drawn_edges[0].get_edgecolor(), drawn_edges[1].get_edgecolor()
+    )
+    assert mpl.colors.same_color(
+        drawn_edges[2].get_edgecolor(), drawn_edges[3].get_edgecolor()
+    )
+    for fap in drawn_edges:
+        assert not mpl.colors.same_color(fap.get_edgecolor(), "blue")
+
+
+def test_fewer_edge_colors_than_num_edges_directed():
+    """Test that the edge colors are cycled when there are fewer specified
+    colors than edges."""
+    G = barbell.to_directed()
+    pos = nx.random_layout(barbell)
+    edgecolors = ("r", "g", "b")
+    drawn_edges = nx.draw_networkx_edges(G, pos, edge_color=edgecolors)
+    for fap, expected in zip(drawn_edges, itertools.cycle(edgecolors)):
+        assert mpl.colors.same_color(fap.get_edgecolor(), expected)
+
+
+def test_more_edge_colors_than_num_edges_directed():
+    """Test that extra edge colors are ignored when there are more specified
+    colors than edges."""
+    G = nx.path_graph(4, create_using=nx.DiGraph)  # 3 edges
+    pos = nx.random_layout(barbell)
+    edgecolors = ("r", "g", "b", "c")  # 4 edge colors
+    drawn_edges = nx.draw_networkx_edges(G, pos, edge_color=edgecolors)
+    for fap, expected in zip(drawn_edges, edgecolors[:-1]):
+        assert mpl.colors.same_color(fap.get_edgecolor(), expected)
+
+
+def test_edge_color_string_with_global_alpha_undirected():
+    edge_collection = nx.draw_networkx_edges(
+        barbell,
+        pos=nx.random_layout(barbell),
+        edgelist=[(0, 1), (1, 2)],
+        edge_color="purple",
+        alpha=0.2,
+    )
+    ec = edge_collection.get_color().squeeze()  # as rgba tuple
+    assert len(edge_collection.get_paths()) == 2
+    assert mpl.colors.same_color(ec[:-1], "purple")
+    assert ec[-1] == 0.2
+
+
+def test_edge_color_string_with_global_alpha_directed():
+    drawn_edges = nx.draw_networkx_edges(
+        barbell.to_directed(),
+        pos=nx.random_layout(barbell),
+        edgelist=[(0, 1), (1, 2)],
+        edge_color="purple",
+        alpha=0.2,
+    )
+    assert len(drawn_edges) == 2
+    for fap in drawn_edges:
+        ec = fap.get_edgecolor()  # As rgba tuple
+        assert mpl.colors.same_color(ec[:-1], "purple")
+        assert ec[-1] == 0.2
+
+
+@pytest.mark.parametrize("graph_type", (nx.Graph, nx.DiGraph))
+def test_edge_width_default_value(graph_type):
+    """Test the default linewidth for edges drawn either via LineCollection or
+    FancyArrowPatches."""
+    G = nx.path_graph(2, create_using=graph_type)
+    pos = {n: (n, n) for n in range(len(G))}
+    drawn_edges = nx.draw_networkx_edges(G, pos)
+    if isinstance(drawn_edges, list):  # directed case: list of FancyArrowPatch
+        drawn_edges = drawn_edges[0]
+    assert drawn_edges.get_linewidth() == 1
+
+
+@pytest.mark.parametrize(
+    ("edgewidth", "expected"),
+    (
+        (3, 3),  # single-value, non-default
+        ([3], 3),  # Single value as a list
+    ),
+)
+def test_edge_width_single_value_undirected(edgewidth, expected):
+    G = nx.path_graph(4)
+    pos = {n: (n, n) for n in range(len(G))}
+    drawn_edges = nx.draw_networkx_edges(G, pos, width=edgewidth)
+    assert len(drawn_edges.get_paths()) == 3
+    assert drawn_edges.get_linewidth() == expected
+
+
+@pytest.mark.parametrize(
+    ("edgewidth", "expected"),
+    (
+        (3, 3),  # single-value, non-default
+        ([3], 3),  # Single value as a list
+    ),
+)
+def test_edge_width_single_value_directed(edgewidth, expected):
+    G = nx.path_graph(4, create_using=nx.DiGraph)
+    pos = {n: (n, n) for n in range(len(G))}
+    drawn_edges = nx.draw_networkx_edges(G, pos, width=edgewidth)
+    assert len(drawn_edges) == 3
+    for fap in drawn_edges:
+        assert fap.get_linewidth() == expected
+
+
+@pytest.mark.parametrize(
+    "edgelist",
+    (
+        [(0, 1), (1, 2), (2, 3)],  # one width specification per edge
+        None,  #  fewer widths than edges - widths cycle
+        [(0, 1), (1, 2)],  # More widths than edges - unused widths ignored
+    ),
+)
+def test_edge_width_sequence(edgelist):
+    G = barbell.to_directed()
+    pos = nx.random_layout(G)
+    widths = (0.5, 2.0, 12.0)
+    drawn_edges = nx.draw_networkx_edges(G, pos, edgelist=edgelist, width=widths)
+    for fap, expected_width in zip(drawn_edges, itertools.cycle(widths)):
+        assert fap.get_linewidth() == expected_width
+
+
+def test_edge_color_with_edge_vmin_vmax():
+    """Test that edge_vmin and edge_vmax properly set the dynamic range of the
+    color map when num edges == len(edge_colors)."""
+    G = nx.path_graph(3, create_using=nx.DiGraph)
+    pos = nx.random_layout(G)
+    # Extract colors from the original (unscaled) colormap
+    drawn_edges = nx.draw_networkx_edges(G, pos, edge_color=[0, 1.0])
+    orig_colors = [e.get_edgecolor() for e in drawn_edges]
+    # Colors from scaled colormap
+    drawn_edges = nx.draw_networkx_edges(
+        G, pos, edge_color=[0.2, 0.8], edge_vmin=0.2, edge_vmax=0.8
+    )
+    scaled_colors = [e.get_edgecolor() for e in drawn_edges]
+    assert mpl.colors.same_color(orig_colors, scaled_colors)
+
+
+def test_directed_edges_linestyle_default():
+    """Test default linestyle for edges drawn with FancyArrowPatches."""
+    G = nx.path_graph(4, create_using=nx.DiGraph)  # Graph with 3 edges
+    pos = {n: (n, n) for n in range(len(G))}
+
+    # edge with default style
+    drawn_edges = nx.draw_networkx_edges(G, pos)
+    assert len(drawn_edges) == 3
+    for fap in drawn_edges:
+        assert fap.get_linestyle() == "solid"
+
+
+@pytest.mark.parametrize(
+    "style",
+    (
+        "dashed",  # edge with string style
+        "--",  # edge with simplified string style
+        (1, (1, 1)),  # edge with (offset, onoffseq) style
+    ),
+)
+def test_directed_edges_linestyle_single_value(style):
+    """Tests support for specifying linestyles with a single value to be applied to
+    all edges in ``draw_networkx_edges`` for FancyArrowPatch outputs
+    (e.g. directed edges)."""
+
+    G = nx.path_graph(4, create_using=nx.DiGraph)  # Graph with 3 edges
+    pos = {n: (n, n) for n in range(len(G))}
+
+    drawn_edges = nx.draw_networkx_edges(G, pos, style=style)
+    assert len(drawn_edges) == 3
+    for fap in drawn_edges:
+        assert fap.get_linestyle() == style
+
+
+@pytest.mark.parametrize(
+    "style_seq",
+    (
+        ["dashed"],  # edge with string style in list
+        ["--"],  # edge with simplified string style in list
+        [(1, (1, 1))],  # edge with (offset, onoffseq) style in list
+        ["--", "-", ":"],  # edges with styles for each edge
+        ["--", "-"],  # edges with fewer styles than edges (styles cycle)
+        ["--", "-", ":", "-."],  # edges with more styles than edges (extra unused)
+    ),
+)
+def test_directed_edges_linestyle_sequence(style_seq):
+    """Tests support for specifying linestyles with sequences in
+    ``draw_networkx_edges`` for FancyArrowPatch outputs (e.g. directed edges)."""
+
+    G = nx.path_graph(4, create_using=nx.DiGraph)  # Graph with 3 edges
+    pos = {n: (n, n) for n in range(len(G))}
+
+    drawn_edges = nx.draw_networkx_edges(G, pos, style=style_seq)
+    assert len(drawn_edges) == 3
+    for fap, style in zip(drawn_edges, itertools.cycle(style_seq)):
+        assert fap.get_linestyle() == style
+
+
+def test_return_types():
+    from matplotlib.collections import LineCollection, PathCollection
+    from matplotlib.patches import FancyArrowPatch
+
+    G = nx.cubical_graph(nx.Graph)
+    dG = nx.cubical_graph(nx.DiGraph)
+    pos = nx.spring_layout(G)
+    dpos = nx.spring_layout(dG)
+    # nodes
+    nodes = nx.draw_networkx_nodes(G, pos)
+    assert isinstance(nodes, PathCollection)
+    # edges
+    edges = nx.draw_networkx_edges(dG, dpos, arrows=True)
+    assert isinstance(edges, list)
+    if len(edges) > 0:
+        assert isinstance(edges[0], FancyArrowPatch)
+    edges = nx.draw_networkx_edges(dG, dpos, arrows=False)
+    assert isinstance(edges, LineCollection)
+    edges = nx.draw_networkx_edges(G, dpos, arrows=None)
+    assert isinstance(edges, LineCollection)
+    edges = nx.draw_networkx_edges(dG, pos, arrows=None)
+    assert isinstance(edges, list)
+    if len(edges) > 0:
+        assert isinstance(edges[0], FancyArrowPatch)
+
+
+def test_labels_and_colors():
+    G = nx.cubical_graph()
+    pos = nx.spring_layout(G)  # positions for all nodes
+    # nodes
+    nx.draw_networkx_nodes(
+        G, pos, nodelist=[0, 1, 2, 3], node_color="r", node_size=500, alpha=0.75
+    )
+    nx.draw_networkx_nodes(
+        G,
+        pos,
+        nodelist=[4, 5, 6, 7],
+        node_color="b",
+        node_size=500,
+        alpha=[0.25, 0.5, 0.75, 1.0],
+    )
+    # edges
+    nx.draw_networkx_edges(G, pos, width=1.0, alpha=0.5)
+    nx.draw_networkx_edges(
+        G,
+        pos,
+        edgelist=[(0, 1), (1, 2), (2, 3), (3, 0)],
+        width=8,
+        alpha=0.5,
+        edge_color="r",
+    )
+    nx.draw_networkx_edges(
+        G,
+        pos,
+        edgelist=[(4, 5), (5, 6), (6, 7), (7, 4)],
+        width=8,
+        alpha=0.5,
+        edge_color="b",
+    )
+    nx.draw_networkx_edges(
+        G,
+        pos,
+        edgelist=[(4, 5), (5, 6), (6, 7), (7, 4)],
+        arrows=True,
+        min_source_margin=0.5,
+        min_target_margin=0.75,
+        width=8,
+        edge_color="b",
+    )
+    # some math labels
+    labels = {}
+    labels[0] = r"$a$"
+    labels[1] = r"$b$"
+    labels[2] = r"$c$"
+    labels[3] = r"$d$"
+    labels[4] = r"$\alpha$"
+    labels[5] = r"$\beta$"
+    labels[6] = r"$\gamma$"
+    labels[7] = r"$\delta$"
+    colors = {n: "k" if n % 2 == 0 else "r" for n in range(8)}
+    nx.draw_networkx_labels(G, pos, labels, font_size=16)
+    nx.draw_networkx_labels(G, pos, labels, font_size=16, font_color=colors)
+    nx.draw_networkx_edge_labels(G, pos, edge_labels=None, rotate=False)
+    nx.draw_networkx_edge_labels(G, pos, edge_labels={(4, 5): "4-5"})
+    # plt.show()
+
+
+@pytest.mark.mpl_image_compare
+def test_house_with_colors():
+    G = nx.house_graph()
+    # explicitly set positions
+    fig, ax = plt.subplots()
+    pos = {0: (0, 0), 1: (1, 0), 2: (0, 1), 3: (1, 1), 4: (0.5, 2.0)}
+
+    # Plot nodes with different properties for the "wall" and "roof" nodes
+    nx.draw_networkx_nodes(
+        G,
+        pos,
+        node_size=3000,
+        nodelist=[0, 1, 2, 3],
+        node_color="tab:blue",
+    )
+    nx.draw_networkx_nodes(
+        G, pos, node_size=2000, nodelist=[4], node_color="tab:orange"
+    )
+    nx.draw_networkx_edges(G, pos, alpha=0.5, width=6)
+    # Customize axes
+    ax.margins(0.11)
+    plt.tight_layout()
+    plt.axis("off")
+    return fig
+
+
+def test_axes():
+    fig, ax = plt.subplots()
+    nx.draw(barbell, ax=ax)
+    nx.draw_networkx_edge_labels(barbell, nx.circular_layout(barbell), ax=ax)
+
+
+def test_empty_graph():
+    G = nx.Graph()
+    nx.draw(G)
+
+
+def test_draw_empty_nodes_return_values():
+    # See Issue #3833
+    import matplotlib.collections  # call as mpl.collections
+
+    G = nx.Graph([(1, 2), (2, 3)])
+    DG = nx.DiGraph([(1, 2), (2, 3)])
+    pos = nx.circular_layout(G)
+    assert isinstance(
+        nx.draw_networkx_nodes(G, pos, nodelist=[]), mpl.collections.PathCollection
+    )
+    assert isinstance(
+        nx.draw_networkx_nodes(DG, pos, nodelist=[]), mpl.collections.PathCollection
+    )
+
+    # drawing empty edges used to return an empty LineCollection or empty list.
+    # Now it is always an empty list (because edges are now lists of FancyArrows)
+    assert nx.draw_networkx_edges(G, pos, edgelist=[], arrows=True) == []
+    assert nx.draw_networkx_edges(G, pos, edgelist=[], arrows=False) == []
+    assert nx.draw_networkx_edges(DG, pos, edgelist=[], arrows=False) == []
+    assert nx.draw_networkx_edges(DG, pos, edgelist=[], arrows=True) == []
+
+
+def test_multigraph_edgelist_tuples():
+    # See Issue #3295
+    G = nx.path_graph(3, create_using=nx.MultiDiGraph)
+    nx.draw_networkx(G, edgelist=[(0, 1, 0)])
+    nx.draw_networkx(G, edgelist=[(0, 1, 0)], node_size=[10, 20, 0])
+
+
+def test_alpha_iter():
+    pos = nx.random_layout(barbell)
+    fig = plt.figure()
+    # with fewer alpha elements than nodes
+    fig.add_subplot(131)  # Each test in a new axis object
+    nx.draw_networkx_nodes(barbell, pos, alpha=[0.1, 0.2])
+    # with equal alpha elements and nodes
+    num_nodes = len(barbell.nodes)
+    alpha = [x / num_nodes for x in range(num_nodes)]
+    colors = range(num_nodes)
+    fig.add_subplot(132)
+    nx.draw_networkx_nodes(barbell, pos, node_color=colors, alpha=alpha)
+    # with more alpha elements than nodes
+    alpha.append(1)
+    fig.add_subplot(133)
+    nx.draw_networkx_nodes(barbell, pos, alpha=alpha)
+
+
+def test_multiple_node_shapes():
+    G = nx.path_graph(4)
+    ax = plt.figure().add_subplot(111)
+    nx.draw(G, node_shape=["o", "h", "s", "^"], ax=ax)
+    scatters = [
+        s for s in ax.get_children() if isinstance(s, mpl.collections.PathCollection)
+    ]
+    assert len(scatters) == 4
+
+
+def test_individualized_font_attributes():
+    G = nx.karate_club_graph()
+    ax = plt.figure().add_subplot(111)
+    nx.draw(
+        G,
+        ax=ax,
+        font_color={n: "k" if n % 2 else "r" for n in G.nodes()},
+        font_size={n: int(n / (34 / 15) + 5) for n in G.nodes()},
+    )
+    for n, t in zip(
+        G.nodes(),
+        [
+            t
+            for t in ax.get_children()
+            if isinstance(t, mpl.text.Text) and len(t.get_text()) > 0
+        ],
+    ):
+        expected = "black" if n % 2 else "red"
+
+        assert mpl.colors.same_color(t.get_color(), expected)
+        assert int(n / (34 / 15) + 5) == t.get_size()
+
+
+def test_individualized_edge_attributes():
+    G = nx.karate_club_graph()
+    ax = plt.figure().add_subplot(111)
+    arrowstyles = ["-|>" if (u + v) % 2 == 0 else "-[" for u, v in G.edges()]
+    arrowsizes = [10 * (u % 2 + v % 2) + 10 for u, v in G.edges()]
+    nx.draw(G, ax=ax, arrows=True, arrowstyle=arrowstyles, arrowsize=arrowsizes)
+    arrows = [
+        f for f in ax.get_children() if isinstance(f, mpl.patches.FancyArrowPatch)
+    ]
+    for e, a in zip(G.edges(), arrows):
+        assert a.get_mutation_scale() == 10 * (e[0] % 2 + e[1] % 2) + 10
+        expected = (
+            mpl.patches.ArrowStyle.BracketB
+            if sum(e) % 2
+            else mpl.patches.ArrowStyle.CurveFilledB
+        )
+        assert isinstance(a.get_arrowstyle(), expected)
+
+
+def test_error_invalid_kwds():
+    with pytest.raises(ValueError, match="Received invalid argument"):
+        nx.draw(barbell, foo="bar")
+
+
+def test_draw_networkx_arrowsize_incorrect_size():
+    G = nx.DiGraph([(0, 1), (0, 2), (0, 3), (1, 3)])
+    arrowsize = [1, 2, 3]
+    with pytest.raises(
+        ValueError, match="arrowsize should have the same length as edgelist"
+    ):
+        nx.draw(G, arrowsize=arrowsize)
+
+
+@pytest.mark.parametrize("arrowsize", (30, [10, 20, 30]))
+def test_draw_edges_arrowsize(arrowsize):
+    G = nx.DiGraph([(0, 1), (0, 2), (1, 2)])
+    pos = {0: (0, 0), 1: (0, 1), 2: (1, 0)}
+    edges = nx.draw_networkx_edges(G, pos=pos, arrowsize=arrowsize)
+
+    arrowsize = itertools.repeat(arrowsize) if isinstance(arrowsize, int) else arrowsize
+
+    for fap, expected in zip(edges, arrowsize):
+        assert isinstance(fap, mpl.patches.FancyArrowPatch)
+        assert fap.get_mutation_scale() == expected
+
+
+@pytest.mark.parametrize("arrowstyle", ("-|>", ["-|>", "-[", "<|-|>"]))
+def test_draw_edges_arrowstyle(arrowstyle):
+    G = nx.DiGraph([(0, 1), (0, 2), (1, 2)])
+    pos = {0: (0, 0), 1: (0, 1), 2: (1, 0)}
+    edges = nx.draw_networkx_edges(G, pos=pos, arrowstyle=arrowstyle)
+
+    arrowstyle = (
+        itertools.repeat(arrowstyle) if isinstance(arrowstyle, str) else arrowstyle
+    )
+
+    arrow_objects = {
+        "-|>": mpl.patches.ArrowStyle.CurveFilledB,
+        "-[": mpl.patches.ArrowStyle.BracketB,
+        "<|-|>": mpl.patches.ArrowStyle.CurveFilledAB,
+    }
+
+    for fap, expected in zip(edges, arrowstyle):
+        assert isinstance(fap, mpl.patches.FancyArrowPatch)
+        assert isinstance(fap.get_arrowstyle(), arrow_objects[expected])
+
+
+def test_np_edgelist():
+    # see issue #4129
+    nx.draw_networkx(barbell, edgelist=np.array([(0, 2), (0, 3)]))
+
+
+def test_draw_nodes_missing_node_from_position():
+    G = nx.path_graph(3)
+    pos = {0: (0, 0), 1: (1, 1)}  # No position for node 2
+    with pytest.raises(nx.NetworkXError, match="has no position"):
+        nx.draw_networkx_nodes(G, pos)
+
+
+# NOTE: parametrizing on marker to test both branches of internal
+# nx.draw_networkx_edges.to_marker_edge function
+@pytest.mark.parametrize("node_shape", ("o", "s"))
+def test_draw_edges_min_source_target_margins(node_shape):
+    """Test that there is a wider gap between the node and the start of an
+    incident edge when min_source_margin is specified.
+
+    This test checks that the use of min_{source/target}_margin kwargs result
+    in shorter (more padding) between the edges and source and target nodes.
+    As a crude visual example, let 's' and 't' represent source and target
+    nodes, respectively:
+
+       Default:
+       s-----------------------------t
+
+       With margins:
+       s   -----------------------   t
+
+    """
+    # Create a single axis object to get consistent pixel coords across
+    # multiple draws
+    fig, ax = plt.subplots()
+    G = nx.DiGraph([(0, 1)])
+    pos = {0: (0, 0), 1: (1, 0)}  # horizontal layout
+    # Get leftmost and rightmost points of the FancyArrowPatch object
+    # representing the edge between nodes 0 and 1 (in pixel coordinates)
+    default_patch = nx.draw_networkx_edges(G, pos, ax=ax, node_shape=node_shape)[0]
+    default_extent = default_patch.get_extents().corners()[::2, 0]
+    # Now, do the same but with "padding" for the source and target via the
+    # min_{source/target}_margin kwargs
+    padded_patch = nx.draw_networkx_edges(
+        G,
+        pos,
+        ax=ax,
+        node_shape=node_shape,
+        min_source_margin=100,
+        min_target_margin=100,
+    )[0]
+    padded_extent = padded_patch.get_extents().corners()[::2, 0]
+
+    # With padding, the left-most extent of the edge should be further to the
+    # right
+    assert padded_extent[0] > default_extent[0]
+    # And the rightmost extent of the edge, further to the left
+    assert padded_extent[1] < default_extent[1]
+
+
+# NOTE: parametrizing on marker to test both branches of internal
+# nx.draw_networkx_edges.to_marker_edge function
+@pytest.mark.parametrize("node_shape", ("o", "s"))
+def test_draw_edges_min_source_target_margins_individual(node_shape):
+    """Test that there is a wider gap between the node and the start of an
+    incident edge when min_source_margin is specified.
+
+    This test checks that the use of min_{source/target}_margin kwargs result
+    in shorter (more padding) between the edges and source and target nodes.
+    As a crude visual example, let 's' and 't' represent source and target
+    nodes, respectively:
+
+       Default:
+       s-----------------------------t
+
+       With margins:
+       s   -----------------------   t
+
+    """
+    # Create a single axis object to get consistent pixel coords across
+    # multiple draws
+    fig, ax = plt.subplots()
+    G = nx.DiGraph([(0, 1), (1, 2)])
+    pos = {0: (0, 0), 1: (1, 0), 2: (2, 0)}  # horizontal layout
+    # Get leftmost and rightmost points of the FancyArrowPatch object
+    # representing the edge between nodes 0 and 1 (in pixel coordinates)
+    default_patch = nx.draw_networkx_edges(G, pos, ax=ax, node_shape=node_shape)
+    default_extent = [d.get_extents().corners()[::2, 0] for d in default_patch]
+    # Now, do the same but with "padding" for the source and target via the
+    # min_{source/target}_margin kwargs
+    padded_patch = nx.draw_networkx_edges(
+        G,
+        pos,
+        ax=ax,
+        node_shape=node_shape,
+        min_source_margin=[98, 102],
+        min_target_margin=[98, 102],
+    )
+    padded_extent = [p.get_extents().corners()[::2, 0] for p in padded_patch]
+    for d, p in zip(default_extent, padded_extent):
+        print(f"{p=}, {d=}")
+        # With padding, the left-most extent of the edge should be further to the
+        # right
+        assert p[0] > d[0]
+        # And the rightmost extent of the edge, further to the left
+        assert p[1] < d[1]
+
+
+def test_nonzero_selfloop_with_single_node():
+    """Ensure that selfloop extent is non-zero when there is only one node."""
+    # Create explicit axis object for test
+    fig, ax = plt.subplots()
+    # Graph with single node + self loop
+    G = nx.DiGraph()
+    G.add_node(0)
+    G.add_edge(0, 0)
+    # Draw
+    patch = nx.draw_networkx_edges(G, {0: (0, 0)})[0]
+    # The resulting patch must have non-zero extent
+    bbox = patch.get_extents()
+    assert bbox.width > 0 and bbox.height > 0
+    # Cleanup
+    plt.delaxes(ax)
+    plt.close()
+
+
+def test_nonzero_selfloop_with_single_edge_in_edgelist():
+    """Ensure that selfloop extent is non-zero when only a single edge is
+    specified in the edgelist.
+    """
+    # Create explicit axis object for test
+    fig, ax = plt.subplots()
+    # Graph with selfloop
+    G = nx.path_graph(2, create_using=nx.DiGraph)
+    G.add_edge(1, 1)
+    pos = {n: (n, n) for n in G.nodes}
+    # Draw only the selfloop edge via the `edgelist` kwarg
+    patch = nx.draw_networkx_edges(G, pos, edgelist=[(1, 1)])[0]
+    # The resulting patch must have non-zero extent
+    bbox = patch.get_extents()
+    assert bbox.width > 0 and bbox.height > 0
+    # Cleanup
+    plt.delaxes(ax)
+    plt.close()
+
+
+def test_apply_alpha():
+    """Test apply_alpha when there is a mismatch between the number of
+    supplied colors and elements.
+    """
+    nodelist = [0, 1, 2]
+    colorlist = ["r", "g", "b"]
+    alpha = 0.5
+    rgba_colors = nx.drawing.nx_pylab.apply_alpha(colorlist, alpha, nodelist)
+    assert all(rgba_colors[:, -1] == alpha)
+
+
+def test_draw_edges_toggling_with_arrows_kwarg():
+    """
+    The `arrows` keyword argument is used as a 3-way switch to select which
+    type of object to use for drawing edges:
+      - ``arrows=None`` -> default (FancyArrowPatches for directed, else LineCollection)
+      - ``arrows=True`` -> FancyArrowPatches
+      - ``arrows=False`` -> LineCollection
+    """
+    import matplotlib.collections
+    import matplotlib.patches
+
+    UG = nx.path_graph(3)
+    DG = nx.path_graph(3, create_using=nx.DiGraph)
+    pos = {n: (n, n) for n in UG}
+
+    # Use FancyArrowPatches when arrows=True, regardless of graph type
+    for G in (UG, DG):
+        edges = nx.draw_networkx_edges(G, pos, arrows=True)
+        assert len(edges) == len(G.edges)
+        assert isinstance(edges[0], mpl.patches.FancyArrowPatch)
+
+    # Use LineCollection when arrows=False, regardless of graph type
+    for G in (UG, DG):
+        edges = nx.draw_networkx_edges(G, pos, arrows=False)
+        assert isinstance(edges, mpl.collections.LineCollection)
+
+    # Default behavior when arrows=None: FAPs for directed, LC's for undirected
+    edges = nx.draw_networkx_edges(UG, pos)
+    assert isinstance(edges, mpl.collections.LineCollection)
+    edges = nx.draw_networkx_edges(DG, pos)
+    assert len(edges) == len(G.edges)
+    assert isinstance(edges[0], mpl.patches.FancyArrowPatch)
+
+
+@pytest.mark.parametrize("drawing_func", (nx.draw, nx.draw_networkx))
+def test_draw_networkx_arrows_default_undirected(drawing_func):
+    import matplotlib.collections
+
+    G = nx.path_graph(3)
+    fig, ax = plt.subplots()
+    drawing_func(G, ax=ax)
+    assert any(isinstance(c, mpl.collections.LineCollection) for c in ax.collections)
+    assert not ax.patches
+    plt.delaxes(ax)
+    plt.close()
+
+
+@pytest.mark.parametrize("drawing_func", (nx.draw, nx.draw_networkx))
+def test_draw_networkx_arrows_default_directed(drawing_func):
+    import matplotlib.collections
+
+    G = nx.path_graph(3, create_using=nx.DiGraph)
+    fig, ax = plt.subplots()
+    drawing_func(G, ax=ax)
+    assert not any(
+        isinstance(c, mpl.collections.LineCollection) for c in ax.collections
+    )
+    assert ax.patches
+    plt.delaxes(ax)
+    plt.close()
+
+
+def test_edgelist_kwarg_not_ignored():
+    # See gh-4994
+    G = nx.path_graph(3)
+    G.add_edge(0, 0)
+    fig, ax = plt.subplots()
+    nx.draw(G, edgelist=[(0, 1), (1, 2)], ax=ax)  # Exclude self-loop from edgelist
+    assert not ax.patches
+    plt.delaxes(ax)
+    plt.close()
+
+
+@pytest.mark.parametrize(
+    ("G", "expected_n_edges"),
+    ([nx.DiGraph(), 2], [nx.MultiGraph(), 4], [nx.MultiDiGraph(), 4]),
+)
+def test_draw_networkx_edges_multiedge_connectionstyle(G, expected_n_edges):
+    """Draws edges correctly for 3 types of graphs and checks for valid length"""
+    for i, (u, v) in enumerate([(0, 1), (0, 1), (0, 1), (0, 2)]):
+        G.add_edge(u, v, weight=round(i / 3, 2))
+    pos = {n: (n, n) for n in G}
+    # Raises on insufficient connectionstyle length
+    for conn_style in [
+        "arc3,rad=0.1",
+        ["arc3,rad=0.1", "arc3,rad=0.1"],
+        ["arc3,rad=0.1", "arc3,rad=0.1", "arc3,rad=0.2"],
+    ]:
+        nx.draw_networkx_edges(G, pos, connectionstyle=conn_style)
+        arrows = nx.draw_networkx_edges(G, pos, connectionstyle=conn_style)
+        assert len(arrows) == expected_n_edges
+
+
+@pytest.mark.parametrize(
+    ("G", "expected_n_edges"),
+    ([nx.DiGraph(), 2], [nx.MultiGraph(), 4], [nx.MultiDiGraph(), 4]),
+)
+def test_draw_networkx_edge_labels_multiedge_connectionstyle(G, expected_n_edges):
+    """Draws labels correctly for 3 types of graphs and checks for valid length and class names"""
+    for i, (u, v) in enumerate([(0, 1), (0, 1), (0, 1), (0, 2)]):
+        G.add_edge(u, v, weight=round(i / 3, 2))
+    pos = {n: (n, n) for n in G}
+    # Raises on insufficient connectionstyle length
+    arrows = nx.draw_networkx_edges(
+        G, pos, connectionstyle=["arc3,rad=0.1", "arc3,rad=0.1", "arc3,rad=0.1"]
+    )
+    for conn_style in [
+        "arc3,rad=0.1",
+        ["arc3,rad=0.1", "arc3,rad=0.2"],
+        ["arc3,rad=0.1", "arc3,rad=0.1", "arc3,rad=0.1"],
+    ]:
+        text_items = nx.draw_networkx_edge_labels(G, pos, connectionstyle=conn_style)
+        assert len(text_items) == expected_n_edges
+        for ti in text_items.values():
+            assert ti.__class__.__name__ == "CurvedArrowText"
+
+
+def test_draw_networkx_edge_label_multiedge():
+    G = nx.MultiGraph()
+    G.add_edge(0, 1, weight=10)
+    G.add_edge(0, 1, weight=20)
+    edge_labels = nx.get_edge_attributes(G, "weight")  # Includes edge keys
+    pos = {n: (n, n) for n in G}
+    text_items = nx.draw_networkx_edge_labels(
+        G,
+        pos,
+        edge_labels=edge_labels,
+        connectionstyle=["arc3,rad=0.1", "arc3,rad=0.2"],
+    )
+    assert len(text_items) == 2
+
+
+def test_draw_networkx_edge_label_empty_dict():
+    """Regression test for draw_networkx_edge_labels with empty dict. See
+    gh-5372."""
+    G = nx.path_graph(3)
+    pos = {n: (n, n) for n in G.nodes}
+    assert nx.draw_networkx_edge_labels(G, pos, edge_labels={}) == {}
+
+
+def test_draw_networkx_edges_undirected_selfloop_colors():
+    """When an edgelist is supplied along with a sequence of colors, check that
+    the self-loops have the correct colors."""
+    fig, ax = plt.subplots()
+    # Edge list and corresponding colors
+    edgelist = [(1, 3), (1, 2), (2, 3), (1, 1), (3, 3), (2, 2)]
+    edge_colors = ["pink", "cyan", "black", "red", "blue", "green"]
+
+    G = nx.Graph(edgelist)
+    pos = {n: (n, n) for n in G.nodes}
+    nx.draw_networkx_edges(G, pos, ax=ax, edgelist=edgelist, edge_color=edge_colors)
+
+    # Verify that there are three fancy arrow patches (1 per self loop)
+    assert len(ax.patches) == 3
+
+    # These are points that should be contained in the self loops. For example,
+    # sl_points[0] will be (1, 1.1), which is inside the "path" of the first
+    # self-loop but outside the others
+    sl_points = np.array(edgelist[-3:]) + np.array([0, 0.1])
+
+    # Check that the mapping between self-loop locations and their colors is
+    # correct
+    for fap, clr, slp in zip(ax.patches, edge_colors[-3:], sl_points):
+        assert fap.get_path().contains_point(slp)
+        assert mpl.colors.same_color(fap.get_edgecolor(), clr)
+    plt.delaxes(ax)
+    plt.close()
+
+
+@pytest.mark.parametrize(
+    "fap_only_kwarg",  # Non-default values for kwargs that only apply to FAPs
+    (
+        {"arrowstyle": "-"},
+        {"arrowsize": 20},
+        {"connectionstyle": "arc3,rad=0.2"},
+        {"min_source_margin": 10},
+        {"min_target_margin": 10},
+    ),
+)
+def test_user_warnings_for_unused_edge_drawing_kwargs(fap_only_kwarg):
+    """Users should get a warning when they specify a non-default value for
+    one of the kwargs that applies only to edges drawn with FancyArrowPatches,
+    but FancyArrowPatches aren't being used under the hood."""
+    G = nx.path_graph(3)
+    pos = {n: (n, n) for n in G}
+    fig, ax = plt.subplots()
+    # By default, an undirected graph will use LineCollection to represent
+    # the edges
+    kwarg_name = list(fap_only_kwarg.keys())[0]
+    with pytest.warns(
+        UserWarning, match=f"\n\nThe {kwarg_name} keyword argument is not applicable"
+    ):
+        nx.draw_networkx_edges(G, pos, ax=ax, **fap_only_kwarg)
+    # FancyArrowPatches are always used when `arrows=True` is specified.
+    # Check that warnings are *not* raised in this case
+    with warnings.catch_warnings():
+        # Escalate warnings -> errors so tests fail if warnings are raised
+        warnings.simplefilter("error")
+        nx.draw_networkx_edges(G, pos, ax=ax, arrows=True, **fap_only_kwarg)
+
+    plt.delaxes(ax)
+    plt.close()
+
+
+@pytest.mark.parametrize("draw_fn", (nx.draw, nx.draw_circular))
+def test_no_warning_on_default_draw_arrowstyle(draw_fn):
+    # See gh-7284
+    fig, ax = plt.subplots()
+    G = nx.cycle_graph(5)
+    with warnings.catch_warnings(record=True) as w:
+        draw_fn(G, ax=ax)
+    assert len(w) == 0
+
+    plt.delaxes(ax)
+    plt.close()
+
+
+@pytest.mark.parametrize("hide_ticks", [False, True])
+@pytest.mark.parametrize(
+    "method",
+    [
+        nx.draw_networkx,
+        nx.draw_networkx_edge_labels,
+        nx.draw_networkx_edges,
+        nx.draw_networkx_labels,
+        nx.draw_networkx_nodes,
+    ],
+)
+def test_hide_ticks(method, hide_ticks):
+    G = nx.path_graph(3)
+    pos = {n: (n, n) for n in G.nodes}
+    _, ax = plt.subplots()
+    method(G, pos=pos, ax=ax, hide_ticks=hide_ticks)
+    for axis in [ax.xaxis, ax.yaxis]:
+        assert bool(axis.get_ticklabels()) != hide_ticks
+
+    plt.delaxes(ax)
+    plt.close()

wemm/lib/python3.10/site-packages/networkx/generators/__init__.py

@@ -0,0 +1,34 @@
+"""
+A package for generating various graphs in networkx.
+
+"""
+
+from networkx.generators.atlas import *
+from networkx.generators.classic import *
+from networkx.generators.cographs import *
+from networkx.generators.community import *
+from networkx.generators.degree_seq import *
+from networkx.generators.directed import *
+from networkx.generators.duplication import *
+from networkx.generators.ego import *
+from networkx.generators.expanders import *
+from networkx.generators.geometric import *
+from networkx.generators.harary_graph import *
+from networkx.generators.internet_as_graphs import *
+from networkx.generators.intersection import *
+from networkx.generators.interval_graph import *
+from networkx.generators.joint_degree_seq import *
+from networkx.generators.lattice import *
+from networkx.generators.line import *
+from networkx.generators.mycielski import *
+from networkx.generators.nonisomorphic_trees import *
+from networkx.generators.random_clustered import *
+from networkx.generators.random_graphs import *
+from networkx.generators.small import *
+from networkx.generators.social import *
+from networkx.generators.spectral_graph_forge import *
+from networkx.generators.stochastic import *
+from networkx.generators.sudoku import *
+from networkx.generators.time_series import *
+from networkx.generators.trees import *
+from networkx.generators.triads import *

wemm/lib/python3.10/site-packages/networkx/generators/classic.py

@@ -0,0 +1,1068 @@
+"""Generators for some classic graphs.
+
+The typical graph builder function is called as follows:
+
+>>> G = nx.complete_graph(100)
+
+returning the complete graph on n nodes labeled 0, .., 99
+as a simple graph. Except for `empty_graph`, all the functions
+in this module return a Graph class (i.e. a simple, undirected graph).
+
+"""
+
+import itertools
+import numbers
+
+import networkx as nx
+from networkx.classes import Graph
+from networkx.exception import NetworkXError
+from networkx.utils import nodes_or_number, pairwise
+
+__all__ = [
+    "balanced_tree",
+    "barbell_graph",
+    "binomial_tree",
+    "complete_graph",
+    "complete_multipartite_graph",
+    "circular_ladder_graph",
+    "circulant_graph",
+    "cycle_graph",
+    "dorogovtsev_goltsev_mendes_graph",
+    "empty_graph",
+    "full_rary_tree",
+    "kneser_graph",
+    "ladder_graph",
+    "lollipop_graph",
+    "null_graph",
+    "path_graph",
+    "star_graph",
+    "tadpole_graph",
+    "trivial_graph",
+    "turan_graph",
+    "wheel_graph",
+]
+
+
+# -------------------------------------------------------------------
+#   Some Classic Graphs
+# -------------------------------------------------------------------
+
+
+def _tree_edges(n, r):
+    if n == 0:
+        return
+    # helper function for trees
+    # yields edges in rooted tree at 0 with n nodes and branching ratio r
+    nodes = iter(range(n))
+    parents = [next(nodes)]  # stack of max length r
+    while parents:
+        source = parents.pop(0)
+        for i in range(r):
+            try:
+                target = next(nodes)
+                parents.append(target)
+                yield source, target
+            except StopIteration:
+                break
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+def full_rary_tree(r, n, create_using=None):
+    """Creates a full r-ary tree of `n` nodes.
+
+    Sometimes called a k-ary, n-ary, or m-ary tree.
+    "... all non-leaf nodes have exactly r children and all levels
+    are full except for some rightmost position of the bottom level
+    (if a leaf at the bottom level is missing, then so are all of the
+    leaves to its right." [1]_
+
+    .. plot::
+
+        >>> nx.draw(nx.full_rary_tree(2, 10))
+
+    Parameters
+    ----------
+    r : int
+        branching factor of the tree
+    n : int
+        Number of nodes in the tree
+    create_using : NetworkX graph constructor, optional (default=nx.Graph)
+       Graph type to create. If graph instance, then cleared before populated.
+
+    Returns
+    -------
+    G : networkx Graph
+        An r-ary tree with n nodes
+
+    References
+    ----------
+    .. [1] An introduction to data structures and algorithms,
+           James Andrew Storer,  Birkhauser Boston 2001, (page 225).
+    """
+    G = empty_graph(n, create_using)
+    G.add_edges_from(_tree_edges(n, r))
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+def kneser_graph(n, k):
+    """Returns the Kneser Graph with parameters `n` and `k`.
+
+    The Kneser Graph has nodes that are k-tuples (subsets) of the integers
+    between 0 and ``n-1``. Nodes are adjacent if their corresponding sets are disjoint.
+
+    Parameters
+    ----------
+    n: int
+        Number of integers from which to make node subsets.
+        Subsets are drawn from ``set(range(n))``.
+    k: int
+        Size of the subsets.
+
+    Returns
+    -------
+    G : NetworkX Graph
+
+    Examples
+    --------
+    >>> G = nx.kneser_graph(5, 2)
+    >>> G.number_of_nodes()
+    10
+    >>> G.number_of_edges()
+    15
+    >>> nx.is_isomorphic(G, nx.petersen_graph())
+    True
+    """
+    if n <= 0:
+        raise NetworkXError("n should be greater than zero")
+    if k <= 0 or k > n:
+        raise NetworkXError("k should be greater than zero and smaller than n")
+
+    G = nx.Graph()
+    # Create all k-subsets of [0, 1, ..., n-1]
+    subsets = list(itertools.combinations(range(n), k))
+
+    if 2 * k > n:
+        G.add_nodes_from(subsets)
+
+    universe = set(range(n))
+    comb = itertools.combinations  # only to make it all fit on one line
+    G.add_edges_from((s, t) for s in subsets for t in comb(universe - set(s), k))
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+def balanced_tree(r, h, create_using=None):
+    """Returns the perfectly balanced `r`-ary tree of height `h`.
+
+    .. plot::
+
+        >>> nx.draw(nx.balanced_tree(2, 3))
+
+    Parameters
+    ----------
+    r : int
+        Branching factor of the tree; each node will have `r`
+        children.
+
+    h : int
+        Height of the tree.
+
+    create_using : NetworkX graph constructor, optional (default=nx.Graph)
+       Graph type to create. If graph instance, then cleared before populated.
+
+    Returns
+    -------
+    G : NetworkX graph
+        A balanced `r`-ary tree of height `h`.
+
+    Notes
+    -----
+    This is the rooted tree where all leaves are at distance `h` from
+    the root. The root has degree `r` and all other internal nodes
+    have degree `r + 1`.
+
+    Node labels are integers, starting from zero.
+
+    A balanced tree is also known as a *complete r-ary tree*.
+
+    """
+    # The number of nodes in the balanced tree is `1 + r + ... + r^h`,
+    # which is computed by using the closed-form formula for a geometric
+    # sum with ratio `r`. In the special case that `r` is 1, the number
+    # of nodes is simply `h + 1` (since the tree is actually a path
+    # graph).
+    if r == 1:
+        n = h + 1
+    else:
+        # This must be an integer if both `r` and `h` are integers. If
+        # they are not, we force integer division anyway.
+        n = (1 - r ** (h + 1)) // (1 - r)
+    return full_rary_tree(r, n, create_using=create_using)
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+def barbell_graph(m1, m2, create_using=None):
+    """Returns the Barbell Graph: two complete graphs connected by a path.
+
+    .. plot::
+
+        >>> nx.draw(nx.barbell_graph(4, 2))
+
+    Parameters
+    ----------
+    m1 : int
+        Size of the left and right barbells, must be greater than 2.
+
+    m2 : int
+        Length of the path connecting the barbells.
+
+    create_using : NetworkX graph constructor, optional (default=nx.Graph)
+       Graph type to create. If graph instance, then cleared before populated.
+       Only undirected Graphs are supported.
+
+    Returns
+    -------
+    G : NetworkX graph
+        A barbell graph.
+
+    Notes
+    -----
+
+
+    Two identical complete graphs $K_{m1}$ form the left and right bells,
+    and are connected by a path $P_{m2}$.
+
+    The `2*m1+m2`  nodes are numbered
+        `0, ..., m1-1` for the left barbell,
+        `m1, ..., m1+m2-1` for the path,
+        and `m1+m2, ..., 2*m1+m2-1` for the right barbell.
+
+    The 3 subgraphs are joined via the edges `(m1-1, m1)` and
+    `(m1+m2-1, m1+m2)`. If `m2=0`, this is merely two complete
+    graphs joined together.
+
+    This graph is an extremal example in David Aldous
+    and Jim Fill's e-text on Random Walks on Graphs.
+
+    """
+    if m1 < 2:
+        raise NetworkXError("Invalid graph description, m1 should be >=2")
+    if m2 < 0:
+        raise NetworkXError("Invalid graph description, m2 should be >=0")
+
+    # left barbell
+    G = complete_graph(m1, create_using)
+    if G.is_directed():
+        raise NetworkXError("Directed Graph not supported")
+
+    # connecting path
+    G.add_nodes_from(range(m1, m1 + m2 - 1))
+    if m2 > 1:
+        G.add_edges_from(pairwise(range(m1, m1 + m2)))
+
+    # right barbell
+    G.add_edges_from(
+        (u, v) for u in range(m1 + m2, 2 * m1 + m2) for v in range(u + 1, 2 * m1 + m2)
+    )
+
+    # connect it up
+    G.add_edge(m1 - 1, m1)
+    if m2 > 0:
+        G.add_edge(m1 + m2 - 1, m1 + m2)
+
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+def binomial_tree(n, create_using=None):
+    """Returns the Binomial Tree of order n.
+
+    The binomial tree of order 0 consists of a single node. A binomial tree of order k
+    is defined recursively by linking two binomial trees of order k-1: the root of one is
+    the leftmost child of the root of the other.
+
+    .. plot::
+
+        >>> nx.draw(nx.binomial_tree(3))
+
+    Parameters
+    ----------
+    n : int
+        Order of the binomial tree.
+
+    create_using : NetworkX graph constructor, optional (default=nx.Graph)
+       Graph type to create. If graph instance, then cleared before populated.
+
+    Returns
+    -------
+    G : NetworkX graph
+        A binomial tree of $2^n$ nodes and $2^n - 1$ edges.
+
+    """
+    G = nx.empty_graph(1, create_using)
+
+    N = 1
+    for i in range(n):
+        # Use G.edges() to ensure 2-tuples. G.edges is 3-tuple for MultiGraph
+        edges = [(u + N, v + N) for (u, v) in G.edges()]
+        G.add_edges_from(edges)
+        G.add_edge(0, N)
+        N *= 2
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+@nodes_or_number(0)
+def complete_graph(n, create_using=None):
+    """Return the complete graph `K_n` with n nodes.
+
+    A complete graph on `n` nodes means that all pairs
+    of distinct nodes have an edge connecting them.
+
+    .. plot::
+
+        >>> nx.draw(nx.complete_graph(5))
+
+    Parameters
+    ----------
+    n : int or iterable container of nodes
+        If n is an integer, nodes are from range(n).
+        If n is a container of nodes, those nodes appear in the graph.
+        Warning: n is not checked for duplicates and if present the
+        resulting graph may not be as desired. Make sure you have no duplicates.
+    create_using : NetworkX graph constructor, optional (default=nx.Graph)
+       Graph type to create. If graph instance, then cleared before populated.
+
+    Examples
+    --------
+    >>> G = nx.complete_graph(9)
+    >>> len(G)
+    9
+    >>> G.size()
+    36
+    >>> G = nx.complete_graph(range(11, 14))
+    >>> list(G.nodes())
+    [11, 12, 13]
+    >>> G = nx.complete_graph(4, nx.DiGraph())
+    >>> G.is_directed()
+    True
+
+    """
+    _, nodes = n
+    G = empty_graph(nodes, create_using)
+    if len(nodes) > 1:
+        if G.is_directed():
+            edges = itertools.permutations(nodes, 2)
+        else:
+            edges = itertools.combinations(nodes, 2)
+        G.add_edges_from(edges)
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+def circular_ladder_graph(n, create_using=None):
+    """Returns the circular ladder graph $CL_n$ of length n.
+
+    $CL_n$ consists of two concentric n-cycles in which
+    each of the n pairs of concentric nodes are joined by an edge.
+
+    Node labels are the integers 0 to n-1
+
+    .. plot::
+
+        >>> nx.draw(nx.circular_ladder_graph(5))
+
+    """
+    G = ladder_graph(n, create_using)
+    G.add_edge(0, n - 1)
+    G.add_edge(n, 2 * n - 1)
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+def circulant_graph(n, offsets, create_using=None):
+    r"""Returns the circulant graph $Ci_n(x_1, x_2, ..., x_m)$ with $n$ nodes.
+
+    The circulant graph $Ci_n(x_1, ..., x_m)$ consists of $n$ nodes $0, ..., n-1$
+    such that node $i$ is connected to nodes $(i + x) \mod n$ and $(i - x) \mod n$
+    for all $x$ in $x_1, ..., x_m$. Thus $Ci_n(1)$ is a cycle graph.
+
+    .. plot::
+
+        >>> nx.draw(nx.circulant_graph(10, [1]))
+
+    Parameters
+    ----------
+    n : integer
+        The number of nodes in the graph.
+    offsets : list of integers
+        A list of node offsets, $x_1$ up to $x_m$, as described above.
+    create_using : NetworkX graph constructor, optional (default=nx.Graph)
+       Graph type to create. If graph instance, then cleared before populated.
+
+    Returns
+    -------
+    NetworkX Graph of type create_using
+
+    Examples
+    --------
+    Many well-known graph families are subfamilies of the circulant graphs;
+    for example, to create the cycle graph on n points, we connect every
+    node to nodes on either side (with offset plus or minus one). For n = 10,
+
+    >>> G = nx.circulant_graph(10, [1])
+    >>> edges = [
+    ...     (0, 9),
+    ...     (0, 1),
+    ...     (1, 2),
+    ...     (2, 3),
+    ...     (3, 4),
+    ...     (4, 5),
+    ...     (5, 6),
+    ...     (6, 7),
+    ...     (7, 8),
+    ...     (8, 9),
+    ... ]
+    >>> sorted(edges) == sorted(G.edges())
+    True
+
+    Similarly, we can create the complete graph
+    on 5 points with the set of offsets [1, 2]:
+
+    >>> G = nx.circulant_graph(5, [1, 2])
+    >>> edges = [
+    ...     (0, 1),
+    ...     (0, 2),
+    ...     (0, 3),
+    ...     (0, 4),
+    ...     (1, 2),
+    ...     (1, 3),
+    ...     (1, 4),
+    ...     (2, 3),
+    ...     (2, 4),
+    ...     (3, 4),
+    ... ]
+    >>> sorted(edges) == sorted(G.edges())
+    True
+
+    """
+    G = empty_graph(n, create_using)
+    for i in range(n):
+        for j in offsets:
+            G.add_edge(i, (i - j) % n)
+            G.add_edge(i, (i + j) % n)
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+@nodes_or_number(0)
+def cycle_graph(n, create_using=None):
+    """Returns the cycle graph $C_n$ of cyclically connected nodes.
+
+    $C_n$ is a path with its two end-nodes connected.
+
+    .. plot::
+
+        >>> nx.draw(nx.cycle_graph(5))
+
+    Parameters
+    ----------
+    n : int or iterable container of nodes
+        If n is an integer, nodes are from `range(n)`.
+        If n is a container of nodes, those nodes appear in the graph.
+        Warning: n is not checked for duplicates and if present the
+        resulting graph may not be as desired. Make sure you have no duplicates.
+    create_using : NetworkX graph constructor, optional (default=nx.Graph)
+       Graph type to create. If graph instance, then cleared before populated.
+
+    Notes
+    -----
+    If create_using is directed, the direction is in increasing order.
+
+    """
+    _, nodes = n
+    G = empty_graph(nodes, create_using)
+    G.add_edges_from(pairwise(nodes, cyclic=True))
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+def dorogovtsev_goltsev_mendes_graph(n, create_using=None):
+    """Returns the hierarchically constructed Dorogovtsev--Goltsev--Mendes graph.
+
+    The Dorogovtsev--Goltsev--Mendes [1]_ procedure deterministically produces a
+    scale-free graph with ``3/2 * (3**(n-1) + 1)`` nodes
+    and ``3**n`` edges for a given `n`.
+
+    Note that `n` denotes the number of times the state transition is applied,
+    starting from the base graph with ``n = 0`` (no transitions), as in [2]_.
+    This is different from the parameter ``t = n - 1`` in [1]_.
+
+    .. plot::
+
+        >>> nx.draw(nx.dorogovtsev_goltsev_mendes_graph(3))
+
+    Parameters
+    ----------
+    n : integer
+        The generation number.
+
+    create_using : NetworkX graph constructor, optional (default=nx.Graph)
+        Graph type to create. Directed graphs and multigraphs are not supported.
+
+    Returns
+    -------
+    G : NetworkX `Graph`
+
+    Raises
+    ------
+    NetworkXError
+        If `n` is less than zero.
+
+        If `create_using` is a directed graph or multigraph.
+
+    Examples
+    --------
+    >>> G = nx.dorogovtsev_goltsev_mendes_graph(3)
+    >>> G.number_of_nodes()
+    15
+    >>> G.number_of_edges()
+    27
+    >>> nx.is_planar(G)
+    True
+
+    References
+    ----------
+    .. [1] S. N. Dorogovtsev, A. V. Goltsev and J. F. F. Mendes,
+        "Pseudofractal scale-free web", Physical Review E 65, 066122, 2002.
+        https://arxiv.org/pdf/cond-mat/0112143.pdf
+    .. [2] Weisstein, Eric W. "Dorogovtsev--Goltsev--Mendes Graph".
+        From MathWorld--A Wolfram Web Resource.
+        https://mathworld.wolfram.com/Dorogovtsev-Goltsev-MendesGraph.html
+    """
+    if n < 0:
+        raise NetworkXError("n must be greater than or equal to 0")
+
+    G = empty_graph(0, create_using)
+    if G.is_directed():
+        raise NetworkXError("directed graph not supported")
+    if G.is_multigraph():
+        raise NetworkXError("multigraph not supported")
+
+    G.add_edge(0, 1)
+    new_node = 2  # next node to be added
+    for _ in range(n):  # iterate over number of generations.
+        new_edges = []
+        for u, v in G.edges():
+            new_edges.append((u, new_node))
+            new_edges.append((v, new_node))
+            new_node += 1
+
+        G.add_edges_from(new_edges)
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+@nodes_or_number(0)
+def empty_graph(n=0, create_using=None, default=Graph):
+    """Returns the empty graph with n nodes and zero edges.
+
+    .. plot::
+
+        >>> nx.draw(nx.empty_graph(5))
+
+    Parameters
+    ----------
+    n : int or iterable container of nodes (default = 0)
+        If n is an integer, nodes are from `range(n)`.
+        If n is a container of nodes, those nodes appear in the graph.
+    create_using : Graph Instance, Constructor or None
+        Indicator of type of graph to return.
+        If a Graph-type instance, then clear and use it.
+        If None, use the `default` constructor.
+        If a constructor, call it to create an empty graph.
+    default : Graph constructor (optional, default = nx.Graph)
+        The constructor to use if create_using is None.
+        If None, then nx.Graph is used.
+        This is used when passing an unknown `create_using` value
+        through your home-grown function to `empty_graph` and
+        you want a default constructor other than nx.Graph.
+
+    Examples
+    --------
+    >>> G = nx.empty_graph(10)
+    >>> G.number_of_nodes()
+    10
+    >>> G.number_of_edges()
+    0
+    >>> G = nx.empty_graph("ABC")
+    >>> G.number_of_nodes()
+    3
+    >>> sorted(G)
+    ['A', 'B', 'C']
+
+    Notes
+    -----
+    The variable create_using should be a Graph Constructor or a
+    "graph"-like object. Constructors, e.g. `nx.Graph` or `nx.MultiGraph`
+    will be used to create the returned graph. "graph"-like objects
+    will be cleared (nodes and edges will be removed) and refitted as
+    an empty "graph" with nodes specified in n. This capability
+    is useful for specifying the class-nature of the resulting empty
+    "graph" (i.e. Graph, DiGraph, MyWeirdGraphClass, etc.).
+
+    The variable create_using has three main uses:
+    Firstly, the variable create_using can be used to create an
+    empty digraph, multigraph, etc.  For example,
+
+    >>> n = 10
+    >>> G = nx.empty_graph(n, create_using=nx.DiGraph)
+
+    will create an empty digraph on n nodes.
+
+    Secondly, one can pass an existing graph (digraph, multigraph,
+    etc.) via create_using. For example, if G is an existing graph
+    (resp. digraph, multigraph, etc.), then empty_graph(n, create_using=G)
+    will empty G (i.e. delete all nodes and edges using G.clear())
+    and then add n nodes and zero edges, and return the modified graph.
+
+    Thirdly, when constructing your home-grown graph creation function
+    you can use empty_graph to construct the graph by passing a user
+    defined create_using to empty_graph. In this case, if you want the
+    default constructor to be other than nx.Graph, specify `default`.
+
+    >>> def mygraph(n, create_using=None):
+    ...     G = nx.empty_graph(n, create_using, nx.MultiGraph)
+    ...     G.add_edges_from([(0, 1), (0, 1)])
+    ...     return G
+    >>> G = mygraph(3)
+    >>> G.is_multigraph()
+    True
+    >>> G = mygraph(3, nx.Graph)
+    >>> G.is_multigraph()
+    False
+
+    See also create_empty_copy(G).
+
+    """
+    if create_using is None:
+        G = default()
+    elif isinstance(create_using, type):
+        G = create_using()
+    elif not hasattr(create_using, "adj"):
+        raise TypeError("create_using is not a valid NetworkX graph type or instance")
+    else:
+        # create_using is a NetworkX style Graph
+        create_using.clear()
+        G = create_using
+
+    _, nodes = n
+    G.add_nodes_from(nodes)
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+def ladder_graph(n, create_using=None):
+    """Returns the Ladder graph of length n.
+
+    This is two paths of n nodes, with
+    each pair connected by a single edge.
+
+    Node labels are the integers 0 to 2*n - 1.
+
+    .. plot::
+
+        >>> nx.draw(nx.ladder_graph(5))
+
+    """
+    G = empty_graph(2 * n, create_using)
+    if G.is_directed():
+        raise NetworkXError("Directed Graph not supported")
+    G.add_edges_from(pairwise(range(n)))
+    G.add_edges_from(pairwise(range(n, 2 * n)))
+    G.add_edges_from((v, v + n) for v in range(n))
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+@nodes_or_number([0, 1])
+def lollipop_graph(m, n, create_using=None):
+    """Returns the Lollipop Graph; ``K_m`` connected to ``P_n``.
+
+    This is the Barbell Graph without the right barbell.
+
+    .. plot::
+
+        >>> nx.draw(nx.lollipop_graph(3, 4))
+
+    Parameters
+    ----------
+    m, n : int or iterable container of nodes
+        If an integer, nodes are from ``range(m)`` and ``range(m, m+n)``.
+        If a container of nodes, those nodes appear in the graph.
+        Warning: `m` and `n` are not checked for duplicates and if present the
+        resulting graph may not be as desired. Make sure you have no duplicates.
+
+        The nodes for `m` appear in the complete graph $K_m$ and the nodes
+        for `n` appear in the path $P_n$
+    create_using : NetworkX graph constructor, optional (default=nx.Graph)
+       Graph type to create. If graph instance, then cleared before populated.
+
+    Returns
+    -------
+    Networkx graph
+       A complete graph with `m` nodes connected to a path of length `n`.
+
+    Notes
+    -----
+    The 2 subgraphs are joined via an edge ``(m-1, m)``.
+    If ``n=0``, this is merely a complete graph.
+
+    (This graph is an extremal example in David Aldous and Jim
+    Fill's etext on Random Walks on Graphs.)
+
+    """
+    m, m_nodes = m
+    M = len(m_nodes)
+    if M < 2:
+        raise NetworkXError("Invalid description: m should indicate at least 2 nodes")
+
+    n, n_nodes = n
+    if isinstance(m, numbers.Integral) and isinstance(n, numbers.Integral):
+        n_nodes = list(range(M, M + n))
+    N = len(n_nodes)
+
+    # the ball
+    G = complete_graph(m_nodes, create_using)
+    if G.is_directed():
+        raise NetworkXError("Directed Graph not supported")
+
+    # the stick
+    G.add_nodes_from(n_nodes)
+    if N > 1:
+        G.add_edges_from(pairwise(n_nodes))
+
+    if len(G) != M + N:
+        raise NetworkXError("Nodes must be distinct in containers m and n")
+
+    # connect ball to stick
+    if M > 0 and N > 0:
+        G.add_edge(m_nodes[-1], n_nodes[0])
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+def null_graph(create_using=None):
+    """Returns the Null graph with no nodes or edges.
+
+    See empty_graph for the use of create_using.
+
+    """
+    G = empty_graph(0, create_using)
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+@nodes_or_number(0)
+def path_graph(n, create_using=None):
+    """Returns the Path graph `P_n` of linearly connected nodes.
+
+    .. plot::
+
+        >>> nx.draw(nx.path_graph(5))
+
+    Parameters
+    ----------
+    n : int or iterable
+        If an integer, nodes are 0 to n - 1.
+        If an iterable of nodes, in the order they appear in the path.
+        Warning: n is not checked for duplicates and if present the
+        resulting graph may not be as desired. Make sure you have no duplicates.
+    create_using : NetworkX graph constructor, optional (default=nx.Graph)
+       Graph type to create. If graph instance, then cleared before populated.
+
+    """
+    _, nodes = n
+    G = empty_graph(nodes, create_using)
+    G.add_edges_from(pairwise(nodes))
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+@nodes_or_number(0)
+def star_graph(n, create_using=None):
+    """Return the star graph
+
+    The star graph consists of one center node connected to n outer nodes.
+
+    .. plot::
+
+        >>> nx.draw(nx.star_graph(6))
+
+    Parameters
+    ----------
+    n : int or iterable
+        If an integer, node labels are 0 to n with center 0.
+        If an iterable of nodes, the center is the first.
+        Warning: n is not checked for duplicates and if present the
+        resulting graph may not be as desired. Make sure you have no duplicates.
+    create_using : NetworkX graph constructor, optional (default=nx.Graph)
+       Graph type to create. If graph instance, then cleared before populated.
+
+    Notes
+    -----
+    The graph has n+1 nodes for integer n.
+    So star_graph(3) is the same as star_graph(range(4)).
+    """
+    n, nodes = n
+    if isinstance(n, numbers.Integral):
+        nodes.append(int(n))  # there should be n+1 nodes
+    G = empty_graph(nodes, create_using)
+    if G.is_directed():
+        raise NetworkXError("Directed Graph not supported")
+
+    if len(nodes) > 1:
+        hub, *spokes = nodes
+        G.add_edges_from((hub, node) for node in spokes)
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+@nodes_or_number([0, 1])
+def tadpole_graph(m, n, create_using=None):
+    """Returns the (m,n)-tadpole graph; ``C_m`` connected to ``P_n``.
+
+    This graph on m+n nodes connects a cycle of size `m` to a path of length `n`.
+    It looks like a tadpole. It is also called a kite graph or a dragon graph.
+
+    .. plot::
+
+        >>> nx.draw(nx.tadpole_graph(3, 5))
+
+    Parameters
+    ----------
+    m, n : int or iterable container of nodes
+        If an integer, nodes are from ``range(m)`` and ``range(m,m+n)``.
+        If a container of nodes, those nodes appear in the graph.
+        Warning: `m` and `n` are not checked for duplicates and if present the
+        resulting graph may not be as desired.
+
+        The nodes for `m` appear in the cycle graph $C_m$ and the nodes
+        for `n` appear in the path $P_n$.
+    create_using : NetworkX graph constructor, optional (default=nx.Graph)
+       Graph type to create. If graph instance, then cleared before populated.
+
+    Returns
+    -------
+    Networkx graph
+       A cycle of size `m` connected to a path of length `n`.
+
+    Raises
+    ------
+    NetworkXError
+        If ``m < 2``. The tadpole graph is undefined for ``m<2``.
+
+    Notes
+    -----
+    The 2 subgraphs are joined via an edge ``(m-1, m)``.
+    If ``n=0``, this is a cycle graph.
+    `m` and/or `n` can be a container of nodes instead of an integer.
+
+    """
+    m, m_nodes = m
+    M = len(m_nodes)
+    if M < 2:
+        raise NetworkXError("Invalid description: m should indicate at least 2 nodes")
+
+    n, n_nodes = n
+    if isinstance(m, numbers.Integral) and isinstance(n, numbers.Integral):
+        n_nodes = list(range(M, M + n))
+
+    # the circle
+    G = cycle_graph(m_nodes, create_using)
+    if G.is_directed():
+        raise NetworkXError("Directed Graph not supported")
+
+    # the stick
+    nx.add_path(G, [m_nodes[-1]] + list(n_nodes))
+
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+def trivial_graph(create_using=None):
+    """Return the Trivial graph with one node (with label 0) and no edges.
+
+    .. plot::
+
+        >>> nx.draw(nx.trivial_graph(), with_labels=True)
+
+    """
+    G = empty_graph(1, create_using)
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+def turan_graph(n, r):
+    r"""Return the Turan Graph
+
+    The Turan Graph is a complete multipartite graph on $n$ nodes
+    with $r$ disjoint subsets. That is, edges connect each node to
+    every node not in its subset.
+
+    Given $n$ and $r$, we create a complete multipartite graph with
+    $r-(n \mod r)$ partitions of size $n/r$, rounded down, and
+    $n \mod r$ partitions of size $n/r+1$, rounded down.
+
+    .. plot::
+
+        >>> nx.draw(nx.turan_graph(6, 2))
+
+    Parameters
+    ----------
+    n : int
+        The number of nodes.
+    r : int
+        The number of partitions.
+        Must be less than or equal to n.
+
+    Notes
+    -----
+    Must satisfy $1 <= r <= n$.
+    The graph has $(r-1)(n^2)/(2r)$ edges, rounded down.
+    """
+
+    if not 1 <= r <= n:
+        raise NetworkXError("Must satisfy 1 <= r <= n")
+
+    partitions = [n // r] * (r - (n % r)) + [n // r + 1] * (n % r)
+    G = complete_multipartite_graph(*partitions)
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+@nodes_or_number(0)
+def wheel_graph(n, create_using=None):
+    """Return the wheel graph
+
+    The wheel graph consists of a hub node connected to a cycle of (n-1) nodes.
+
+    .. plot::
+
+        >>> nx.draw(nx.wheel_graph(5))
+
+    Parameters
+    ----------
+    n : int or iterable
+        If an integer, node labels are 0 to n with center 0.
+        If an iterable of nodes, the center is the first.
+        Warning: n is not checked for duplicates and if present the
+        resulting graph may not be as desired. Make sure you have no duplicates.
+    create_using : NetworkX graph constructor, optional (default=nx.Graph)
+       Graph type to create. If graph instance, then cleared before populated.
+
+    Node labels are the integers 0 to n - 1.
+    """
+    _, nodes = n
+    G = empty_graph(nodes, create_using)
+    if G.is_directed():
+        raise NetworkXError("Directed Graph not supported")
+
+    if len(nodes) > 1:
+        hub, *rim = nodes
+        G.add_edges_from((hub, node) for node in rim)
+        if len(rim) > 1:
+            G.add_edges_from(pairwise(rim, cyclic=True))
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+def complete_multipartite_graph(*subset_sizes):
+    """Returns the complete multipartite graph with the specified subset sizes.
+
+    .. plot::
+
+        >>> nx.draw(nx.complete_multipartite_graph(1, 2, 3))
+
+    Parameters
+    ----------
+    subset_sizes : tuple of integers or tuple of node iterables
+       The arguments can either all be integer number of nodes or they
+       can all be iterables of nodes. If integers, they represent the
+       number of nodes in each subset of the multipartite graph.
+       If iterables, each is used to create the nodes for that subset.
+       The length of subset_sizes is the number of subsets.
+
+    Returns
+    -------
+    G : NetworkX Graph
+       Returns the complete multipartite graph with the specified subsets.
+
+       For each node, the node attribute 'subset' is an integer
+       indicating which subset contains the node.
+
+    Examples
+    --------
+    Creating a complete tripartite graph, with subsets of one, two, and three
+    nodes, respectively.
+
+        >>> G = nx.complete_multipartite_graph(1, 2, 3)
+        >>> [G.nodes[u]["subset"] for u in G]
+        [0, 1, 1, 2, 2, 2]
+        >>> list(G.edges(0))
+        [(0, 1), (0, 2), (0, 3), (0, 4), (0, 5)]
+        >>> list(G.edges(2))
+        [(2, 0), (2, 3), (2, 4), (2, 5)]
+        >>> list(G.edges(4))
+        [(4, 0), (4, 1), (4, 2)]
+
+        >>> G = nx.complete_multipartite_graph("a", "bc", "def")
+        >>> [G.nodes[u]["subset"] for u in sorted(G)]
+        [0, 1, 1, 2, 2, 2]
+
+    Notes
+    -----
+    This function generalizes several other graph builder functions.
+
+    - If no subset sizes are given, this returns the null graph.
+    - If a single subset size `n` is given, this returns the empty graph on
+      `n` nodes.
+    - If two subset sizes `m` and `n` are given, this returns the complete
+      bipartite graph on `m + n` nodes.
+    - If subset sizes `1` and `n` are given, this returns the star graph on
+      `n + 1` nodes.
+
+    See also
+    --------
+    complete_bipartite_graph
+    """
+    # The complete multipartite graph is an undirected simple graph.
+    G = Graph()
+
+    if len(subset_sizes) == 0:
+        return G
+
+    # set up subsets of nodes
+    try:
+        extents = pairwise(itertools.accumulate((0,) + subset_sizes))
+        subsets = [range(start, end) for start, end in extents]
+    except TypeError:
+        subsets = subset_sizes
+    else:
+        if any(size < 0 for size in subset_sizes):
+            raise NetworkXError(f"Negative number of nodes not valid: {subset_sizes}")
+
+    # add nodes with subset attribute
+    # while checking that ints are not mixed with iterables
+    try:
+        for i, subset in enumerate(subsets):
+            G.add_nodes_from(subset, subset=i)
+    except TypeError as err:
+        raise NetworkXError("Arguments must be all ints or all iterables") from err
+
+    # Across subsets, all nodes should be adjacent.
+    # We can use itertools.combinations() because undirected.
+    for subset1, subset2 in itertools.combinations(subsets, 2):
+        G.add_edges_from(itertools.product(subset1, subset2))
+    return G

wemm/lib/python3.10/site-packages/networkx/generators/degree_seq.py

@@ -0,0 +1,867 @@
+"""Generate graphs with a given degree sequence or expected degree sequence."""
+
+import heapq
+import math
+from itertools import chain, combinations, zip_longest
+from operator import itemgetter
+
+import networkx as nx
+from networkx.utils import py_random_state, random_weighted_sample
+
+__all__ = [
+    "configuration_model",
+    "directed_configuration_model",
+    "expected_degree_graph",
+    "havel_hakimi_graph",
+    "directed_havel_hakimi_graph",
+    "degree_sequence_tree",
+    "random_degree_sequence_graph",
+]
+
+chaini = chain.from_iterable
+
+
+def _to_stublist(degree_sequence):
+    """Returns a list of degree-repeated node numbers.
+
+    ``degree_sequence`` is a list of nonnegative integers representing
+    the degrees of nodes in a graph.
+
+    This function returns a list of node numbers with multiplicities
+    according to the given degree sequence. For example, if the first
+    element of ``degree_sequence`` is ``3``, then the first node number,
+    ``0``, will appear at the head of the returned list three times. The
+    node numbers are assumed to be the numbers zero through
+    ``len(degree_sequence) - 1``.
+
+    Examples
+    --------
+
+    >>> degree_sequence = [1, 2, 3]
+    >>> _to_stublist(degree_sequence)
+    [0, 1, 1, 2, 2, 2]
+
+    If a zero appears in the sequence, that means the node exists but
+    has degree zero, so that number will be skipped in the returned
+    list::
+
+    >>> degree_sequence = [2, 0, 1]
+    >>> _to_stublist(degree_sequence)
+    [0, 0, 2]
+
+    """
+    return list(chaini([n] * d for n, d in enumerate(degree_sequence)))
+
+
+def _configuration_model(
+    deg_sequence, create_using, directed=False, in_deg_sequence=None, seed=None
+):
+    """Helper function for generating either undirected or directed
+    configuration model graphs.
+
+    ``deg_sequence`` is a list of nonnegative integers representing the
+    degree of the node whose label is the index of the list element.
+
+    ``create_using`` see :func:`~networkx.empty_graph`.
+
+    ``directed`` and ``in_deg_sequence`` are required if you want the
+    returned graph to be generated using the directed configuration
+    model algorithm. If ``directed`` is ``False``, then ``deg_sequence``
+    is interpreted as the degree sequence of an undirected graph and
+    ``in_deg_sequence`` is ignored. Otherwise, if ``directed`` is
+    ``True``, then ``deg_sequence`` is interpreted as the out-degree
+    sequence and ``in_deg_sequence`` as the in-degree sequence of a
+    directed graph.
+
+    .. note::
+
+       ``deg_sequence`` and ``in_deg_sequence`` need not be the same
+       length.
+
+    ``seed`` is a random.Random or numpy.random.RandomState instance
+
+    This function returns a graph, directed if and only if ``directed``
+    is ``True``, generated according to the configuration model
+    algorithm. For more information on the algorithm, see the
+    :func:`configuration_model` or :func:`directed_configuration_model`
+    functions.
+
+    """
+    n = len(deg_sequence)
+    G = nx.empty_graph(n, create_using)
+    # If empty, return the null graph immediately.
+    if n == 0:
+        return G
+    # Build a list of available degree-repeated nodes.  For example,
+    # for degree sequence [3, 2, 1, 1, 1], the "stub list" is
+    # initially [0, 0, 0, 1, 1, 2, 3, 4], that is, node 0 has degree
+    # 3 and thus is repeated 3 times, etc.
+    #
+    # Also, shuffle the stub list in order to get a random sequence of
+    # node pairs.
+    if directed:
+        pairs = zip_longest(deg_sequence, in_deg_sequence, fillvalue=0)
+        # Unzip the list of pairs into a pair of lists.
+        out_deg, in_deg = zip(*pairs)
+
+        out_stublist = _to_stublist(out_deg)
+        in_stublist = _to_stublist(in_deg)
+
+        seed.shuffle(out_stublist)
+        seed.shuffle(in_stublist)
+    else:
+        stublist = _to_stublist(deg_sequence)
+        # Choose a random balanced bipartition of the stublist, which
+        # gives a random pairing of nodes. In this implementation, we
+        # shuffle the list and then split it in half.
+        n = len(stublist)
+        half = n // 2
+        seed.shuffle(stublist)
+        out_stublist, in_stublist = stublist[:half], stublist[half:]
+    G.add_edges_from(zip(out_stublist, in_stublist))
+    return G
+
+
+@py_random_state(2)
+@nx._dispatchable(graphs=None, returns_graph=True)
+def configuration_model(deg_sequence, create_using=None, seed=None):
+    """Returns a random graph with the given degree sequence.
+
+    The configuration model generates a random pseudograph (graph with
+    parallel edges and self loops) by randomly assigning edges to
+    match the given degree sequence.
+
+    Parameters
+    ----------
+    deg_sequence :  list of nonnegative integers
+        Each list entry corresponds to the degree of a node.
+    create_using : NetworkX graph constructor, optional (default MultiGraph)
+        Graph type to create. If graph instance, then cleared before populated.
+    seed : integer, random_state, or None (default)
+        Indicator of random number generation state.
+        See :ref:`Randomness<randomness>`.
+
+    Returns
+    -------
+    G : MultiGraph
+        A graph with the specified degree sequence.
+        Nodes are labeled starting at 0 with an index
+        corresponding to the position in deg_sequence.
+
+    Raises
+    ------
+    NetworkXError
+        If the degree sequence does not have an even sum.
+
+    See Also
+    --------
+    is_graphical
+
+    Notes
+    -----
+    As described by Newman [1]_.
+
+    A non-graphical degree sequence (not realizable by some simple
+    graph) is allowed since this function returns graphs with self
+    loops and parallel edges.  An exception is raised if the degree
+    sequence does not have an even sum.
+
+    This configuration model construction process can lead to
+    duplicate edges and loops.  You can remove the self-loops and
+    parallel edges (see below) which will likely result in a graph
+    that doesn't have the exact degree sequence specified.
+
+    The density of self-loops and parallel edges tends to decrease as
+    the number of nodes increases. However, typically the number of
+    self-loops will approach a Poisson distribution with a nonzero mean,
+    and similarly for the number of parallel edges.  Consider a node
+    with *k* stubs. The probability of being joined to another stub of
+    the same node is basically (*k* - *1*) / *N*, where *k* is the
+    degree and *N* is the number of nodes. So the probability of a
+    self-loop scales like *c* / *N* for some constant *c*. As *N* grows,
+    this means we expect *c* self-loops. Similarly for parallel edges.
+
+    References
+    ----------
+    .. [1] M.E.J. Newman, "The structure and function of complex networks",
+       SIAM REVIEW 45-2, pp 167-256, 2003.
+
+    Examples
+    --------
+    You can create a degree sequence following a particular distribution
+    by using the one of the distribution functions in
+    :mod:`~networkx.utils.random_sequence` (or one of your own). For
+    example, to create an undirected multigraph on one hundred nodes
+    with degree sequence chosen from the power law distribution:
+
+    >>> sequence = nx.random_powerlaw_tree_sequence(100, tries=5000)
+    >>> G = nx.configuration_model(sequence)
+    >>> len(G)
+    100
+    >>> actual_degrees = [d for v, d in G.degree()]
+    >>> actual_degrees == sequence
+    True
+
+    The returned graph is a multigraph, which may have parallel
+    edges. To remove any parallel edges from the returned graph:
+
+    >>> G = nx.Graph(G)
+
+    Similarly, to remove self-loops:
+
+    >>> G.remove_edges_from(nx.selfloop_edges(G))
+
+    """
+    if sum(deg_sequence) % 2 != 0:
+        msg = "Invalid degree sequence: sum of degrees must be even, not odd"
+        raise nx.NetworkXError(msg)
+
+    G = nx.empty_graph(0, create_using, default=nx.MultiGraph)
+    if G.is_directed():
+        raise nx.NetworkXNotImplemented("not implemented for directed graphs")
+
+    G = _configuration_model(deg_sequence, G, seed=seed)
+
+    return G
+
+
+@py_random_state(3)
+@nx._dispatchable(graphs=None, returns_graph=True)
+def directed_configuration_model(
+    in_degree_sequence, out_degree_sequence, create_using=None, seed=None
+):
+    """Returns a directed_random graph with the given degree sequences.
+
+    The configuration model generates a random directed pseudograph
+    (graph with parallel edges and self loops) by randomly assigning
+    edges to match the given degree sequences.
+
+    Parameters
+    ----------
+    in_degree_sequence :  list of nonnegative integers
+       Each list entry corresponds to the in-degree of a node.
+    out_degree_sequence :  list of nonnegative integers
+       Each list entry corresponds to the out-degree of a node.
+    create_using : NetworkX graph constructor, optional (default MultiDiGraph)
+        Graph type to create. If graph instance, then cleared before populated.
+    seed : integer, random_state, or None (default)
+        Indicator of random number generation state.
+        See :ref:`Randomness<randomness>`.
+
+    Returns
+    -------
+    G : MultiDiGraph
+        A graph with the specified degree sequences.
+        Nodes are labeled starting at 0 with an index
+        corresponding to the position in deg_sequence.
+
+    Raises
+    ------
+    NetworkXError
+        If the degree sequences do not have the same sum.
+
+    See Also
+    --------
+    configuration_model
+
+    Notes
+    -----
+    Algorithm as described by Newman [1]_.
+
+    A non-graphical degree sequence (not realizable by some simple
+    graph) is allowed since this function returns graphs with self
+    loops and parallel edges.  An exception is raised if the degree
+    sequences does not have the same sum.
+
+    This configuration model construction process can lead to
+    duplicate edges and loops.  You can remove the self-loops and
+    parallel edges (see below) which will likely result in a graph
+    that doesn't have the exact degree sequence specified.  This
+    "finite-size effect" decreases as the size of the graph increases.
+
+    References
+    ----------
+    .. [1] Newman, M. E. J. and Strogatz, S. H. and Watts, D. J.
+       Random graphs with arbitrary degree distributions and their applications
+       Phys. Rev. E, 64, 026118 (2001)
+
+    Examples
+    --------
+    One can modify the in- and out-degree sequences from an existing
+    directed graph in order to create a new directed graph. For example,
+    here we modify the directed path graph:
+
+    >>> D = nx.DiGraph([(0, 1), (1, 2), (2, 3)])
+    >>> din = list(d for n, d in D.in_degree())
+    >>> dout = list(d for n, d in D.out_degree())
+    >>> din.append(1)
+    >>> dout[0] = 2
+    >>> # We now expect an edge from node 0 to a new node, node 3.
+    ... D = nx.directed_configuration_model(din, dout)
+
+    The returned graph is a directed multigraph, which may have parallel
+    edges. To remove any parallel edges from the returned graph:
+
+    >>> D = nx.DiGraph(D)
+
+    Similarly, to remove self-loops:
+
+    >>> D.remove_edges_from(nx.selfloop_edges(D))
+
+    """
+    if sum(in_degree_sequence) != sum(out_degree_sequence):
+        msg = "Invalid degree sequences: sequences must have equal sums"
+        raise nx.NetworkXError(msg)
+
+    if create_using is None:
+        create_using = nx.MultiDiGraph
+
+    G = _configuration_model(
+        out_degree_sequence,
+        create_using,
+        directed=True,
+        in_deg_sequence=in_degree_sequence,
+        seed=seed,
+    )
+
+    name = "directed configuration_model {} nodes {} edges"
+    return G
+
+
+@py_random_state(1)
+@nx._dispatchable(graphs=None, returns_graph=True)
+def expected_degree_graph(w, seed=None, selfloops=True):
+    r"""Returns a random graph with given expected degrees.
+
+    Given a sequence of expected degrees $W=(w_0,w_1,\ldots,w_{n-1})$
+    of length $n$ this algorithm assigns an edge between node $u$ and
+    node $v$ with probability
+
+    .. math::
+
+       p_{uv} = \frac{w_u w_v}{\sum_k w_k} .
+
+    Parameters
+    ----------
+    w : list
+        The list of expected degrees.
+    selfloops: bool (default=True)
+        Set to False to remove the possibility of self-loop edges.
+    seed : integer, random_state, or None (default)
+        Indicator of random number generation state.
+        See :ref:`Randomness<randomness>`.
+
+    Returns
+    -------
+    Graph
+
+    Examples
+    --------
+    >>> z = [10 for i in range(100)]
+    >>> G = nx.expected_degree_graph(z)
+
+    Notes
+    -----
+    The nodes have integer labels corresponding to index of expected degrees
+    input sequence.
+
+    The complexity of this algorithm is $\mathcal{O}(n+m)$ where $n$ is the
+    number of nodes and $m$ is the expected number of edges.
+
+    The model in [1]_ includes the possibility of self-loop edges.
+    Set selfloops=False to produce a graph without self loops.
+
+    For finite graphs this model doesn't produce exactly the given
+    expected degree sequence.  Instead the expected degrees are as
+    follows.
+
+    For the case without self loops (selfloops=False),
+
+    .. math::
+
+       E[deg(u)] = \sum_{v \ne u} p_{uv}
+                = w_u \left( 1 - \frac{w_u}{\sum_k w_k} \right) .
+
+
+    NetworkX uses the standard convention that a self-loop edge counts 2
+    in the degree of a node, so with self loops (selfloops=True),
+
+    .. math::
+
+       E[deg(u)] =  \sum_{v \ne u} p_{uv}  + 2 p_{uu}
+                = w_u \left( 1 + \frac{w_u}{\sum_k w_k} \right) .
+
+    References
+    ----------
+    .. [1] Fan Chung and L. Lu, Connected components in random graphs with
+       given expected degree sequences, Ann. Combinatorics, 6,
+       pp. 125-145, 2002.
+    .. [2] Joel Miller and Aric Hagberg,
+       Efficient generation of networks with given expected degrees,
+       in Algorithms and Models for the Web-Graph (WAW 2011),
+       Alan Frieze, Paul Horn, and Paweł Prałat (Eds), LNCS 6732,
+       pp. 115-126, 2011.
+    """
+    n = len(w)
+    G = nx.empty_graph(n)
+
+    # If there are no nodes are no edges in the graph, return the empty graph.
+    if n == 0 or max(w) == 0:
+        return G
+
+    rho = 1 / sum(w)
+    # Sort the weights in decreasing order. The original order of the
+    # weights dictates the order of the (integer) node labels, so we
+    # need to remember the permutation applied in the sorting.
+    order = sorted(enumerate(w), key=itemgetter(1), reverse=True)
+    mapping = {c: u for c, (u, v) in enumerate(order)}
+    seq = [v for u, v in order]
+    last = n
+    if not selfloops:
+        last -= 1
+    for u in range(last):
+        v = u
+        if not selfloops:
+            v += 1
+        factor = seq[u] * rho
+        p = min(seq[v] * factor, 1)
+        while v < n and p > 0:
+            if p != 1:
+                r = seed.random()
+                v += math.floor(math.log(r, 1 - p))
+            if v < n:
+                q = min(seq[v] * factor, 1)
+                if seed.random() < q / p:
+                    G.add_edge(mapping[u], mapping[v])
+                v += 1
+                p = q
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+def havel_hakimi_graph(deg_sequence, create_using=None):
+    """Returns a simple graph with given degree sequence constructed
+    using the Havel-Hakimi algorithm.
+
+    Parameters
+    ----------
+    deg_sequence: list of integers
+        Each integer corresponds to the degree of a node (need not be sorted).
+    create_using : NetworkX graph constructor, optional (default=nx.Graph)
+        Graph type to create. If graph instance, then cleared before populated.
+        Directed graphs are not allowed.
+
+    Raises
+    ------
+    NetworkXException
+        For a non-graphical degree sequence (i.e. one
+        not realizable by some simple graph).
+
+    Notes
+    -----
+    The Havel-Hakimi algorithm constructs a simple graph by
+    successively connecting the node of highest degree to other nodes
+    of highest degree, resorting remaining nodes by degree, and
+    repeating the process. The resulting graph has a high
+    degree-associativity.  Nodes are labeled 1,.., len(deg_sequence),
+    corresponding to their position in deg_sequence.
+
+    The basic algorithm is from Hakimi [1]_ and was generalized by
+    Kleitman and Wang [2]_.
+
+    References
+    ----------
+    .. [1] Hakimi S., On Realizability of a Set of Integers as
+       Degrees of the Vertices of a Linear Graph. I,
+       Journal of SIAM, 10(3), pp. 496-506 (1962)
+    .. [2] Kleitman D.J. and Wang D.L.
+       Algorithms for Constructing Graphs and Digraphs with Given Valences
+       and Factors  Discrete Mathematics, 6(1), pp. 79-88 (1973)
+    """
+    if not nx.is_graphical(deg_sequence):
+        raise nx.NetworkXError("Invalid degree sequence")
+
+    p = len(deg_sequence)
+    G = nx.empty_graph(p, create_using)
+    if G.is_directed():
+        raise nx.NetworkXError("Directed graphs are not supported")
+    num_degs = [[] for i in range(p)]
+    dmax, dsum, n = 0, 0, 0
+    for d in deg_sequence:
+        # Process only the non-zero integers
+        if d > 0:
+            num_degs[d].append(n)
+            dmax, dsum, n = max(dmax, d), dsum + d, n + 1
+    # Return graph if no edges
+    if n == 0:
+        return G
+
+    modstubs = [(0, 0)] * (dmax + 1)
+    # Successively reduce degree sequence by removing the maximum degree
+    while n > 0:
+        # Retrieve the maximum degree in the sequence
+        while len(num_degs[dmax]) == 0:
+            dmax -= 1
+        # If there are not enough stubs to connect to, then the sequence is
+        # not graphical
+        if dmax > n - 1:
+            raise nx.NetworkXError("Non-graphical integer sequence")
+
+        # Remove largest stub in list
+        source = num_degs[dmax].pop()
+        n -= 1
+        # Reduce the next dmax largest stubs
+        mslen = 0
+        k = dmax
+        for i in range(dmax):
+            while len(num_degs[k]) == 0:
+                k -= 1
+            target = num_degs[k].pop()
+            G.add_edge(source, target)
+            n -= 1
+            if k > 1:
+                modstubs[mslen] = (k - 1, target)
+                mslen += 1
+        # Add back to the list any nonzero stubs that were removed
+        for i in range(mslen):
+            (stubval, stubtarget) = modstubs[i]
+            num_degs[stubval].append(stubtarget)
+            n += 1
+
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+def directed_havel_hakimi_graph(in_deg_sequence, out_deg_sequence, create_using=None):
+    """Returns a directed graph with the given degree sequences.
+
+    Parameters
+    ----------
+    in_deg_sequence :  list of integers
+        Each list entry corresponds to the in-degree of a node.
+    out_deg_sequence : list of integers
+        Each list entry corresponds to the out-degree of a node.
+    create_using : NetworkX graph constructor, optional (default DiGraph)
+        Graph type to create. If graph instance, then cleared before populated.
+
+    Returns
+    -------
+    G : DiGraph
+        A graph with the specified degree sequences.
+        Nodes are labeled starting at 0 with an index
+        corresponding to the position in deg_sequence
+
+    Raises
+    ------
+    NetworkXError
+        If the degree sequences are not digraphical.
+
+    See Also
+    --------
+    configuration_model
+
+    Notes
+    -----
+    Algorithm as described by Kleitman and Wang [1]_.
+
+    References
+    ----------
+    .. [1] D.J. Kleitman and D.L. Wang
+       Algorithms for Constructing Graphs and Digraphs with Given Valences
+       and Factors Discrete Mathematics, 6(1), pp. 79-88 (1973)
+    """
+    in_deg_sequence = nx.utils.make_list_of_ints(in_deg_sequence)
+    out_deg_sequence = nx.utils.make_list_of_ints(out_deg_sequence)
+
+    # Process the sequences and form two heaps to store degree pairs with
+    # either zero or nonzero out degrees
+    sumin, sumout = 0, 0
+    nin, nout = len(in_deg_sequence), len(out_deg_sequence)
+    maxn = max(nin, nout)
+    G = nx.empty_graph(maxn, create_using, default=nx.DiGraph)
+    if maxn == 0:
+        return G
+    maxin = 0
+    stubheap, zeroheap = [], []
+    for n in range(maxn):
+        in_deg, out_deg = 0, 0
+        if n < nout:
+            out_deg = out_deg_sequence[n]
+        if n < nin:
+            in_deg = in_deg_sequence[n]
+        if in_deg < 0 or out_deg < 0:
+            raise nx.NetworkXError(
+                "Invalid degree sequences. Sequence values must be positive."
+            )
+        sumin, sumout, maxin = sumin + in_deg, sumout + out_deg, max(maxin, in_deg)
+        if in_deg > 0:
+            stubheap.append((-1 * out_deg, -1 * in_deg, n))
+        elif out_deg > 0:
+            zeroheap.append((-1 * out_deg, n))
+    if sumin != sumout:
+        raise nx.NetworkXError(
+            "Invalid degree sequences. Sequences must have equal sums."
+        )
+    heapq.heapify(stubheap)
+    heapq.heapify(zeroheap)
+
+    modstubs = [(0, 0, 0)] * (maxin + 1)
+    # Successively reduce degree sequence by removing the maximum
+    while stubheap:
+        # Remove first value in the sequence with a non-zero in degree
+        (freeout, freein, target) = heapq.heappop(stubheap)
+        freein *= -1
+        if freein > len(stubheap) + len(zeroheap):
+            raise nx.NetworkXError("Non-digraphical integer sequence")
+
+        # Attach arcs from the nodes with the most stubs
+        mslen = 0
+        for i in range(freein):
+            if zeroheap and (not stubheap or stubheap[0][0] > zeroheap[0][0]):
+                (stubout, stubsource) = heapq.heappop(zeroheap)
+                stubin = 0
+            else:
+                (stubout, stubin, stubsource) = heapq.heappop(stubheap)
+            if stubout == 0:
+                raise nx.NetworkXError("Non-digraphical integer sequence")
+            G.add_edge(stubsource, target)
+            # Check if source is now totally connected
+            if stubout + 1 < 0 or stubin < 0:
+                modstubs[mslen] = (stubout + 1, stubin, stubsource)
+                mslen += 1
+
+        # Add the nodes back to the heaps that still have available stubs
+        for i in range(mslen):
+            stub = modstubs[i]
+            if stub[1] < 0:
+                heapq.heappush(stubheap, stub)
+            else:
+                heapq.heappush(zeroheap, (stub[0], stub[2]))
+        if freeout < 0:
+            heapq.heappush(zeroheap, (freeout, target))
+
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+def degree_sequence_tree(deg_sequence, create_using=None):
+    """Make a tree for the given degree sequence.
+
+    A tree has #nodes-#edges=1 so
+    the degree sequence must have
+    len(deg_sequence)-sum(deg_sequence)/2=1
+    """
+    # The sum of the degree sequence must be even (for any undirected graph).
+    degree_sum = sum(deg_sequence)
+    if degree_sum % 2 != 0:
+        msg = "Invalid degree sequence: sum of degrees must be even, not odd"
+        raise nx.NetworkXError(msg)
+    if len(deg_sequence) - degree_sum // 2 != 1:
+        msg = (
+            "Invalid degree sequence: tree must have number of nodes equal"
+            " to one less than the number of edges"
+        )
+        raise nx.NetworkXError(msg)
+    G = nx.empty_graph(0, create_using)
+    if G.is_directed():
+        raise nx.NetworkXError("Directed Graph not supported")
+
+    # Sort all degrees greater than 1 in decreasing order.
+    #
+    # TODO Does this need to be sorted in reverse order?
+    deg = sorted((s for s in deg_sequence if s > 1), reverse=True)
+
+    # make path graph as backbone
+    n = len(deg) + 2
+    nx.add_path(G, range(n))
+    last = n
+
+    # add the leaves
+    for source in range(1, n - 1):
+        nedges = deg.pop() - 2
+        for target in range(last, last + nedges):
+            G.add_edge(source, target)
+        last += nedges
+
+    # in case we added one too many
+    if len(G) > len(deg_sequence):
+        G.remove_node(0)
+    return G
+
+
+@py_random_state(1)
+@nx._dispatchable(graphs=None, returns_graph=True)
+def random_degree_sequence_graph(sequence, seed=None, tries=10):
+    r"""Returns a simple random graph with the given degree sequence.
+
+    If the maximum degree $d_m$ in the sequence is $O(m^{1/4})$ then the
+    algorithm produces almost uniform random graphs in $O(m d_m)$ time
+    where $m$ is the number of edges.
+
+    Parameters
+    ----------
+    sequence :  list of integers
+        Sequence of degrees
+    seed : integer, random_state, or None (default)
+        Indicator of random number generation state.
+        See :ref:`Randomness<randomness>`.
+    tries : int, optional
+        Maximum number of tries to create a graph
+
+    Returns
+    -------
+    G : Graph
+        A graph with the specified degree sequence.
+        Nodes are labeled starting at 0 with an index
+        corresponding to the position in the sequence.
+
+    Raises
+    ------
+    NetworkXUnfeasible
+        If the degree sequence is not graphical.
+    NetworkXError
+        If a graph is not produced in specified number of tries
+
+    See Also
+    --------
+    is_graphical, configuration_model
+
+    Notes
+    -----
+    The generator algorithm [1]_ is not guaranteed to produce a graph.
+
+    References
+    ----------
+    .. [1] Moshen Bayati, Jeong Han Kim, and Amin Saberi,
+       A sequential algorithm for generating random graphs.
+       Algorithmica, Volume 58, Number 4, 860-910,
+       DOI: 10.1007/s00453-009-9340-1
+
+    Examples
+    --------
+    >>> sequence = [1, 2, 2, 3]
+    >>> G = nx.random_degree_sequence_graph(sequence, seed=42)
+    >>> sorted(d for n, d in G.degree())
+    [1, 2, 2, 3]
+    """
+    DSRG = DegreeSequenceRandomGraph(sequence, seed)
+    for try_n in range(tries):
+        try:
+            return DSRG.generate()
+        except nx.NetworkXUnfeasible:
+            pass
+    raise nx.NetworkXError(f"failed to generate graph in {tries} tries")
+
+
+class DegreeSequenceRandomGraph:
+    # class to generate random graphs with a given degree sequence
+    # use random_degree_sequence_graph()
+    def __init__(self, degree, rng):
+        if not nx.is_graphical(degree):
+            raise nx.NetworkXUnfeasible("degree sequence is not graphical")
+        self.rng = rng
+        self.degree = list(degree)
+        # node labels are integers 0,...,n-1
+        self.m = sum(self.degree) / 2.0  # number of edges
+        try:
+            self.dmax = max(self.degree)  # maximum degree
+        except ValueError:
+            self.dmax = 0
+
+    def generate(self):
+        # remaining_degree is mapping from int->remaining degree
+        self.remaining_degree = dict(enumerate(self.degree))
+        # add all nodes to make sure we get isolated nodes
+        self.graph = nx.Graph()
+        self.graph.add_nodes_from(self.remaining_degree)
+        # remove zero degree nodes
+        for n, d in list(self.remaining_degree.items()):
+            if d == 0:
+                del self.remaining_degree[n]
+        if len(self.remaining_degree) > 0:
+            # build graph in three phases according to how many unmatched edges
+            self.phase1()
+            self.phase2()
+            self.phase3()
+        return self.graph
+
+    def update_remaining(self, u, v, aux_graph=None):
+        # decrement remaining nodes, modify auxiliary graph if in phase3
+        if aux_graph is not None:
+            # remove edges from auxiliary graph
+            aux_graph.remove_edge(u, v)
+        if self.remaining_degree[u] == 1:
+            del self.remaining_degree[u]
+            if aux_graph is not None:
+                aux_graph.remove_node(u)
+        else:
+            self.remaining_degree[u] -= 1
+        if self.remaining_degree[v] == 1:
+            del self.remaining_degree[v]
+            if aux_graph is not None:
+                aux_graph.remove_node(v)
+        else:
+            self.remaining_degree[v] -= 1
+
+    def p(self, u, v):
+        # degree probability
+        return 1 - self.degree[u] * self.degree[v] / (4.0 * self.m)
+
+    def q(self, u, v):
+        # remaining degree probability
+        norm = max(self.remaining_degree.values()) ** 2
+        return self.remaining_degree[u] * self.remaining_degree[v] / norm
+
+    def suitable_edge(self):
+        """Returns True if and only if an arbitrary remaining node can
+        potentially be joined with some other remaining node.
+
+        """
+        nodes = iter(self.remaining_degree)
+        u = next(nodes)
+        return any(v not in self.graph[u] for v in nodes)
+
+    def phase1(self):
+        # choose node pairs from (degree) weighted distribution
+        rem_deg = self.remaining_degree
+        while sum(rem_deg.values()) >= 2 * self.dmax**2:
+            u, v = sorted(random_weighted_sample(rem_deg, 2, self.rng))
+            if self.graph.has_edge(u, v):
+                continue
+            if self.rng.random() < self.p(u, v):  # accept edge
+                self.graph.add_edge(u, v)
+                self.update_remaining(u, v)
+
+    def phase2(self):
+        # choose remaining nodes uniformly at random and use rejection sampling
+        remaining_deg = self.remaining_degree
+        rng = self.rng
+        while len(remaining_deg) >= 2 * self.dmax:
+            while True:
+                u, v = sorted(rng.sample(list(remaining_deg.keys()), 2))
+                if self.graph.has_edge(u, v):
+                    continue
+                if rng.random() < self.q(u, v):
+                    break
+            if rng.random() < self.p(u, v):  # accept edge
+                self.graph.add_edge(u, v)
+                self.update_remaining(u, v)
+
+    def phase3(self):
+        # build potential remaining edges and choose with rejection sampling
+        potential_edges = combinations(self.remaining_degree, 2)
+        # build auxiliary graph of potential edges not already in graph
+        H = nx.Graph(
+            [(u, v) for (u, v) in potential_edges if not self.graph.has_edge(u, v)]
+        )
+        rng = self.rng
+        while self.remaining_degree:
+            if not self.suitable_edge():
+                raise nx.NetworkXUnfeasible("no suitable edges left")
+            while True:
+                u, v = sorted(rng.choice(list(H.edges())))
+                if rng.random() < self.q(u, v):
+                    break
+            if rng.random() < self.p(u, v):  # accept edge
+                self.graph.add_edge(u, v)
+                self.update_remaining(u, v, aux_graph=H)

wemm/lib/python3.10/site-packages/networkx/generators/expanders.py

@@ -0,0 +1,474 @@
+"""Provides explicit constructions of expander graphs."""
+
+import itertools
+
+import networkx as nx
+
+__all__ = [
+    "margulis_gabber_galil_graph",
+    "chordal_cycle_graph",
+    "paley_graph",
+    "maybe_regular_expander",
+    "is_regular_expander",
+    "random_regular_expander_graph",
+]
+
+
+# Other discrete torus expanders can be constructed by using the following edge
+# sets. For more information, see Chapter 4, "Expander Graphs", in
+# "Pseudorandomness", by Salil Vadhan.
+#
+# For a directed expander, add edges from (x, y) to:
+#
+#     (x, y),
+#     ((x + 1) % n, y),
+#     (x, (y + 1) % n),
+#     (x, (x + y) % n),
+#     (-y % n, x)
+#
+# For an undirected expander, add the reverse edges.
+#
+# Also appearing in the paper of Gabber and Galil:
+#
+#     (x, y),
+#     (x, (x + y) % n),
+#     (x, (x + y + 1) % n),
+#     ((x + y) % n, y),
+#     ((x + y + 1) % n, y)
+#
+# and:
+#
+#     (x, y),
+#     ((x + 2*y) % n, y),
+#     ((x + (2*y + 1)) % n, y),
+#     ((x + (2*y + 2)) % n, y),
+#     (x, (y + 2*x) % n),
+#     (x, (y + (2*x + 1)) % n),
+#     (x, (y + (2*x + 2)) % n),
+#
+@nx._dispatchable(graphs=None, returns_graph=True)
+def margulis_gabber_galil_graph(n, create_using=None):
+    r"""Returns the Margulis-Gabber-Galil undirected MultiGraph on `n^2` nodes.
+
+    The undirected MultiGraph is regular with degree `8`. Nodes are integer
+    pairs. The second-largest eigenvalue of the adjacency matrix of the graph
+    is at most `5 \sqrt{2}`, regardless of `n`.
+
+    Parameters
+    ----------
+    n : int
+        Determines the number of nodes in the graph: `n^2`.
+    create_using : NetworkX graph constructor, optional (default MultiGraph)
+       Graph type to create. If graph instance, then cleared before populated.
+
+    Returns
+    -------
+    G : graph
+        The constructed undirected multigraph.
+
+    Raises
+    ------
+    NetworkXError
+        If the graph is directed or not a multigraph.
+
+    """
+    G = nx.empty_graph(0, create_using, default=nx.MultiGraph)
+    if G.is_directed() or not G.is_multigraph():
+        msg = "`create_using` must be an undirected multigraph."
+        raise nx.NetworkXError(msg)
+
+    for x, y in itertools.product(range(n), repeat=2):
+        for u, v in (
+            ((x + 2 * y) % n, y),
+            ((x + (2 * y + 1)) % n, y),
+            (x, (y + 2 * x) % n),
+            (x, (y + (2 * x + 1)) % n),
+        ):
+            G.add_edge((x, y), (u, v))
+    G.graph["name"] = f"margulis_gabber_galil_graph({n})"
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+def chordal_cycle_graph(p, create_using=None):
+    """Returns the chordal cycle graph on `p` nodes.
+
+    The returned graph is a cycle graph on `p` nodes with chords joining each
+    vertex `x` to its inverse modulo `p`. This graph is a (mildly explicit)
+    3-regular expander [1]_.
+
+    `p` *must* be a prime number.
+
+    Parameters
+    ----------
+    p : a prime number
+
+        The number of vertices in the graph. This also indicates where the
+        chordal edges in the cycle will be created.
+
+    create_using : NetworkX graph constructor, optional (default=nx.Graph)
+       Graph type to create. If graph instance, then cleared before populated.
+
+    Returns
+    -------
+    G : graph
+        The constructed undirected multigraph.
+
+    Raises
+    ------
+    NetworkXError
+
+        If `create_using` indicates directed or not a multigraph.
+
+    References
+    ----------
+
+    .. [1] Theorem 4.4.2 in A. Lubotzky. "Discrete groups, expanding graphs and
+           invariant measures", volume 125 of Progress in Mathematics.
+           Birkhäuser Verlag, Basel, 1994.
+
+    """
+    G = nx.empty_graph(0, create_using, default=nx.MultiGraph)
+    if G.is_directed() or not G.is_multigraph():
+        msg = "`create_using` must be an undirected multigraph."
+        raise nx.NetworkXError(msg)
+
+    for x in range(p):
+        left = (x - 1) % p
+        right = (x + 1) % p
+        # Here we apply Fermat's Little Theorem to compute the multiplicative
+        # inverse of x in Z/pZ. By Fermat's Little Theorem,
+        #
+        #     x^p = x (mod p)
+        #
+        # Therefore,
+        #
+        #     x * x^(p - 2) = 1 (mod p)
+        #
+        # The number 0 is a special case: we just let its inverse be itself.
+        chord = pow(x, p - 2, p) if x > 0 else 0
+        for y in (left, right, chord):
+            G.add_edge(x, y)
+    G.graph["name"] = f"chordal_cycle_graph({p})"
+    return G
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+def paley_graph(p, create_using=None):
+    r"""Returns the Paley $\frac{(p-1)}{2}$ -regular graph on $p$ nodes.
+
+    The returned graph is a graph on $\mathbb{Z}/p\mathbb{Z}$ with edges between $x$ and $y$
+    if and only if $x-y$ is a nonzero square in $\mathbb{Z}/p\mathbb{Z}$.
+
+    If $p \equiv 1  \pmod 4$, $-1$ is a square in $\mathbb{Z}/p\mathbb{Z}$ and therefore $x-y$ is a square if and
+    only if $y-x$ is also a square, i.e the edges in the Paley graph are symmetric.
+
+    If $p \equiv 3 \pmod 4$, $-1$ is not a square in $\mathbb{Z}/p\mathbb{Z}$ and therefore either $x-y$ or $y-x$
+    is a square in $\mathbb{Z}/p\mathbb{Z}$ but not both.
+
+    Note that a more general definition of Paley graphs extends this construction
+    to graphs over $q=p^n$ vertices, by using the finite field $F_q$ instead of $\mathbb{Z}/p\mathbb{Z}$.
+    This construction requires to compute squares in general finite fields and is
+    not what is implemented here (i.e `paley_graph(25)` does not return the true
+    Paley graph associated with $5^2$).
+
+    Parameters
+    ----------
+    p : int, an odd prime number.
+
+    create_using : NetworkX graph constructor, optional (default=nx.Graph)
+       Graph type to create. If graph instance, then cleared before populated.
+
+    Returns
+    -------
+    G : graph
+        The constructed directed graph.
+
+    Raises
+    ------
+    NetworkXError
+        If the graph is a multigraph.
+
+    References
+    ----------
+    Chapter 13 in B. Bollobas, Random Graphs. Second edition.
+    Cambridge Studies in Advanced Mathematics, 73.
+    Cambridge University Press, Cambridge (2001).
+    """
+    G = nx.empty_graph(0, create_using, default=nx.DiGraph)
+    if G.is_multigraph():
+        msg = "`create_using` cannot be a multigraph."
+        raise nx.NetworkXError(msg)
+
+    # Compute the squares in Z/pZ.
+    # Make it a set to uniquify (there are exactly (p-1)/2 squares in Z/pZ
+    # when is prime).
+    square_set = {(x**2) % p for x in range(1, p) if (x**2) % p != 0}
+
+    for x in range(p):
+        for x2 in square_set:
+            G.add_edge(x, (x + x2) % p)
+    G.graph["name"] = f"paley({p})"
+    return G
+
+
+@nx.utils.decorators.np_random_state("seed")
+@nx._dispatchable(graphs=None, returns_graph=True)
+def maybe_regular_expander(n, d, *, create_using=None, max_tries=100, seed=None):
+    r"""Utility for creating a random regular expander.
+
+    Returns a random $d$-regular graph on $n$ nodes which is an expander
+    graph with very good probability.
+
+    Parameters
+    ----------
+    n : int
+      The number of nodes.
+    d : int
+      The degree of each node.
+    create_using : Graph Instance or Constructor
+      Indicator of type of graph to return.
+      If a Graph-type instance, then clear and use it.
+      If a constructor, call it to create an empty graph.
+      Use the Graph constructor by default.
+    max_tries : int. (default: 100)
+      The number of allowed loops when generating each independent cycle
+    seed : (default: None)
+      Seed used to set random number generation state. See :ref`Randomness<randomness>`.
+
+    Notes
+    -----
+    The nodes are numbered from $0$ to $n - 1$.
+
+    The graph is generated by taking $d / 2$ random independent cycles.
+
+    Joel Friedman proved that in this model the resulting
+    graph is an expander with probability
+    $1 - O(n^{-\tau})$ where $\tau = \lceil (\sqrt{d - 1}) / 2 \rceil - 1$. [1]_
+
+    Examples
+    --------
+    >>> G = nx.maybe_regular_expander(n=200, d=6, seed=8020)
+
+    Returns
+    -------
+    G : graph
+        The constructed undirected graph.
+
+    Raises
+    ------
+    NetworkXError
+        If $d % 2 != 0$ as the degree must be even.
+        If $n - 1$ is less than $ 2d $ as the graph is complete at most.
+        If max_tries is reached
+
+    See Also
+    --------
+    is_regular_expander
+    random_regular_expander_graph
+
+    References
+    ----------
+    .. [1] Joel Friedman,
+       A Proof of Alon’s Second Eigenvalue Conjecture and Related Problems, 2004
+       https://arxiv.org/abs/cs/0405020
+
+    """
+
+    import numpy as np
+
+    if n < 1:
+        raise nx.NetworkXError("n must be a positive integer")
+
+    if not (d >= 2):
+        raise nx.NetworkXError("d must be greater than or equal to 2")
+
+    if not (d % 2 == 0):
+        raise nx.NetworkXError("d must be even")
+
+    if not (n - 1 >= d):
+        raise nx.NetworkXError(
+            f"Need n-1>= d to have room for {d//2} independent cycles with {n} nodes"
+        )
+
+    G = nx.empty_graph(n, create_using)
+
+    if n < 2:
+        return G
+
+    cycles = []
+    edges = set()
+
+    # Create d / 2 cycles
+    for i in range(d // 2):
+        iterations = max_tries
+        # Make sure the cycles are independent to have a regular graph
+        while len(edges) != (i + 1) * n:
+            iterations -= 1
+            # Faster than random.permutation(n) since there are only
+            # (n-1)! distinct cycles against n! permutations of size n
+            cycle = seed.permutation(n - 1).tolist()
+            cycle.append(n - 1)
+
+            new_edges = {
+                (u, v)
+                for u, v in nx.utils.pairwise(cycle, cyclic=True)
+                if (u, v) not in edges and (v, u) not in edges
+            }
+            # If the new cycle has no edges in common with previous cycles
+            # then add it to the list otherwise try again
+            if len(new_edges) == n:
+                cycles.append(cycle)
+                edges.update(new_edges)
+
+            if iterations == 0:
+                raise nx.NetworkXError("Too many iterations in maybe_regular_expander")
+
+    G.add_edges_from(edges)
+
+    return G
+
+
+@nx.utils.not_implemented_for("directed")
+@nx.utils.not_implemented_for("multigraph")
+@nx._dispatchable(preserve_edge_attrs={"G": {"weight": 1}})
+def is_regular_expander(G, *, epsilon=0):
+    r"""Determines whether the graph G is a regular expander. [1]_
+
+    An expander graph is a sparse graph with strong connectivity properties.
+
+    More precisely, this helper checks whether the graph is a
+    regular $(n, d, \lambda)$-expander with $\lambda$ close to
+    the Alon-Boppana bound and given by
+    $\lambda = 2 \sqrt{d - 1} + \epsilon$. [2]_
+
+    In the case where $\epsilon = 0$ then if the graph successfully passes the test
+    it is a Ramanujan graph. [3]_
+
+    A Ramanujan graph has spectral gap almost as large as possible, which makes them
+    excellent expanders.
+
+    Parameters
+    ----------
+    G : NetworkX graph
+    epsilon : int, float, default=0
+
+    Returns
+    -------
+    bool
+        Whether the given graph is a regular $(n, d, \lambda)$-expander
+        where $\lambda = 2 \sqrt{d - 1} + \epsilon$.
+
+    Examples
+    --------
+    >>> G = nx.random_regular_expander_graph(20, 4)
+    >>> nx.is_regular_expander(G)
+    True
+
+    See Also
+    --------
+    maybe_regular_expander
+    random_regular_expander_graph
+
+    References
+    ----------
+    .. [1] Expander graph, https://en.wikipedia.org/wiki/Expander_graph
+    .. [2] Alon-Boppana bound, https://en.wikipedia.org/wiki/Alon%E2%80%93Boppana_bound
+    .. [3] Ramanujan graphs, https://en.wikipedia.org/wiki/Ramanujan_graph
+
+    """
+
+    import numpy as np
+    from scipy.sparse.linalg import eigsh
+
+    if epsilon < 0:
+        raise nx.NetworkXError("epsilon must be non negative")
+
+    if not nx.is_regular(G):
+        return False
+
+    _, d = nx.utils.arbitrary_element(G.degree)
+
+    A = nx.adjacency_matrix(G, dtype=float)
+    lams = eigsh(A, which="LM", k=2, return_eigenvectors=False)
+
+    # lambda2 is the second biggest eigenvalue
+    lambda2 = min(lams)
+
+    # Use bool() to convert numpy scalar to Python Boolean
+    return bool(abs(lambda2) < 2 ** np.sqrt(d - 1) + epsilon)
+
+
+@nx.utils.decorators.np_random_state("seed")
+@nx._dispatchable(graphs=None, returns_graph=True)
+def random_regular_expander_graph(
+    n, d, *, epsilon=0, create_using=None, max_tries=100, seed=None
+):
+    r"""Returns a random regular expander graph on $n$ nodes with degree $d$.
+
+    An expander graph is a sparse graph with strong connectivity properties. [1]_
+
+    More precisely the returned graph is a $(n, d, \lambda)$-expander with
+    $\lambda = 2 \sqrt{d - 1} + \epsilon$, close to the Alon-Boppana bound. [2]_
+
+    In the case where $\epsilon = 0$ it returns a Ramanujan graph.
+    A Ramanujan graph has spectral gap almost as large as possible,
+    which makes them excellent expanders. [3]_
+
+    Parameters
+    ----------
+    n : int
+      The number of nodes.
+    d : int
+      The degree of each node.
+    epsilon : int, float, default=0
+    max_tries : int, (default: 100)
+      The number of allowed loops, also used in the maybe_regular_expander utility
+    seed : (default: None)
+      Seed used to set random number generation state. See :ref`Randomness<randomness>`.
+
+    Raises
+    ------
+    NetworkXError
+        If max_tries is reached
+
+    Examples
+    --------
+    >>> G = nx.random_regular_expander_graph(20, 4)
+    >>> nx.is_regular_expander(G)
+    True
+
+    Notes
+    -----
+    This loops over `maybe_regular_expander` and can be slow when
+    $n$ is too big or $\epsilon$ too small.
+
+    See Also
+    --------
+    maybe_regular_expander
+    is_regular_expander
+
+    References
+    ----------
+    .. [1] Expander graph, https://en.wikipedia.org/wiki/Expander_graph
+    .. [2] Alon-Boppana bound, https://en.wikipedia.org/wiki/Alon%E2%80%93Boppana_bound
+    .. [3] Ramanujan graphs, https://en.wikipedia.org/wiki/Ramanujan_graph
+
+    """
+    G = maybe_regular_expander(
+        n, d, create_using=create_using, max_tries=max_tries, seed=seed
+    )
+    iterations = max_tries
+
+    while not is_regular_expander(G, epsilon=epsilon):
+        iterations -= 1
+        G = maybe_regular_expander(
+            n=n, d=d, create_using=create_using, max_tries=max_tries, seed=seed
+        )
+
+        if iterations == 0:
+            raise nx.NetworkXError(
+                "Too many iterations in random_regular_expander_graph"
+            )
+
+    return G

wemm/lib/python3.10/site-packages/networkx/generators/mycielski.py

@@ -0,0 +1,110 @@
+"""Functions related to the Mycielski Operation and the Mycielskian family
+of graphs.
+
+"""
+
+import networkx as nx
+from networkx.utils import not_implemented_for
+
+__all__ = ["mycielskian", "mycielski_graph"]
+
+
+@not_implemented_for("directed")
+@not_implemented_for("multigraph")
+@nx._dispatchable(returns_graph=True)
+def mycielskian(G, iterations=1):
+    r"""Returns the Mycielskian of a simple, undirected graph G
+
+    The Mycielskian of graph preserves a graph's triangle free
+    property while increasing the chromatic number by 1.
+
+    The Mycielski Operation on a graph, :math:`G=(V, E)`, constructs a new
+    graph with :math:`2|V| + 1` nodes and :math:`3|E| + |V|` edges.
+
+    The construction is as follows:
+
+    Let :math:`V = {0, ..., n-1}`. Construct another vertex set
+    :math:`U = {n, ..., 2n}` and a vertex, `w`.
+    Construct a new graph, `M`, with vertices :math:`U \bigcup V \bigcup w`.
+    For edges, :math:`(u, v) \in E` add edges :math:`(u, v), (u, v + n)`, and
+    :math:`(u + n, v)` to M. Finally, for all vertices :math:`u \in U`, add
+    edge :math:`(u, w)` to M.
+
+    The Mycielski Operation can be done multiple times by repeating the above
+    process iteratively.
+
+    More information can be found at https://en.wikipedia.org/wiki/Mycielskian
+
+    Parameters
+    ----------
+    G : graph
+        A simple, undirected NetworkX graph
+    iterations : int
+        The number of iterations of the Mycielski operation to
+        perform on G. Defaults to 1. Must be a non-negative integer.
+
+    Returns
+    -------
+    M : graph
+        The Mycielskian of G after the specified number of iterations.
+
+    Notes
+    -----
+    Graph, node, and edge data are not necessarily propagated to the new graph.
+
+    """
+
+    M = nx.convert_node_labels_to_integers(G)
+
+    for i in range(iterations):
+        n = M.number_of_nodes()
+        M.add_nodes_from(range(n, 2 * n))
+        old_edges = list(M.edges())
+        M.add_edges_from((u, v + n) for u, v in old_edges)
+        M.add_edges_from((u + n, v) for u, v in old_edges)
+        M.add_node(2 * n)
+        M.add_edges_from((u + n, 2 * n) for u in range(n))
+
+    return M
+
+
+@nx._dispatchable(graphs=None, returns_graph=True)
+def mycielski_graph(n):
+    """Generator for the n_th Mycielski Graph.
+
+    The Mycielski family of graphs is an infinite set of graphs.
+    :math:`M_1` is the singleton graph, :math:`M_2` is two vertices with an
+    edge, and, for :math:`i > 2`, :math:`M_i` is the Mycielskian of
+    :math:`M_{i-1}`.
+
+    More information can be found at
+    http://mathworld.wolfram.com/MycielskiGraph.html
+
+    Parameters
+    ----------
+    n : int
+        The desired Mycielski Graph.
+
+    Returns
+    -------
+    M : graph
+        The n_th Mycielski Graph
+
+    Notes
+    -----
+    The first graph in the Mycielski sequence is the singleton graph.
+    The Mycielskian of this graph is not the :math:`P_2` graph, but rather the
+    :math:`P_2` graph with an extra, isolated vertex. The second Mycielski
+    graph is the :math:`P_2` graph, so the first two are hard coded.
+    The remaining graphs are generated using the Mycielski operation.
+
+    """
+
+    if n < 1:
+        raise nx.NetworkXError("must satisfy n >= 1")
+
+    if n == 1:
+        return nx.empty_graph(1)
+
+    else:
+        return mycielskian(nx.path_graph(2), n - 2)

wemm/lib/python3.10/site-packages/networkx/generators/tests/test_cographs.py

@@ -0,0 +1,18 @@
+"""Unit tests for the :mod:`networkx.generators.cographs` module."""
+
+import networkx as nx
+
+
+def test_random_cograph():
+    n = 3
+    G = nx.random_cograph(n)
+
+    assert len(G) == 2**n
+
+    # Every connected subgraph of G has diameter <= 2
+    if nx.is_connected(G):
+        assert nx.diameter(G) <= 2
+    else:
+        components = nx.connected_components(G)
+        for component in components:
+            assert nx.diameter(G.subgraph(component)) <= 2