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1
+ import math
2
+ import numpy as np
3
+ from scipy import special
4
+ from scipy.stats._qmc import primes_from_2_to
5
+
6
+
7
+ def _primes(n):
8
+ # Defined to facilitate comparison between translation and source
9
+ # In Matlab, primes(10.5) -> first four primes, primes(11.5) -> first five
10
+ return primes_from_2_to(math.ceil(n))
11
+
12
+
13
+ def _gaminv(a, b):
14
+ # Defined to facilitate comparison between translation and source
15
+ # Matlab's `gaminv` is like `special.gammaincinv` but args are reversed
16
+ return special.gammaincinv(b, a)
17
+
18
+
19
+ def _qsimvtv(m, nu, sigma, a, b, rng):
20
+ """Estimates the multivariate t CDF using randomized QMC
21
+
22
+ Parameters
23
+ ----------
24
+ m : int
25
+ The number of points
26
+ nu : float
27
+ Degrees of freedom
28
+ sigma : ndarray
29
+ A 2D positive semidefinite covariance matrix
30
+ a : ndarray
31
+ Lower integration limits
32
+ b : ndarray
33
+ Upper integration limits.
34
+ rng : Generator
35
+ Pseudorandom number generator
36
+
37
+ Returns
38
+ -------
39
+ p : float
40
+ The estimated CDF.
41
+ e : float
42
+ An absolute error estimate.
43
+
44
+ """
45
+ # _qsimvtv is a Python translation of the Matlab function qsimvtv,
46
+ # semicolons and all.
47
+ #
48
+ # This function uses an algorithm given in the paper
49
+ # "Comparison of Methods for the Numerical Computation of
50
+ # Multivariate t Probabilities", in
51
+ # J. of Computational and Graphical Stat., 11(2002), pp. 950-971, by
52
+ # Alan Genz and Frank Bretz
53
+ #
54
+ # The primary references for the numerical integration are
55
+ # "On a Number-Theoretical Integration Method"
56
+ # H. Niederreiter, Aequationes Mathematicae, 8(1972), pp. 304-11.
57
+ # and
58
+ # "Randomization of Number Theoretic Methods for Multiple Integration"
59
+ # R. Cranley & T.N.L. Patterson, SIAM J Numer Anal, 13(1976), pp. 904-14.
60
+ #
61
+ # Alan Genz is the author of this function and following Matlab functions.
62
+ # Alan Genz, WSU Math, PO Box 643113, Pullman, WA 99164-3113
63
+ # Email : alangenz@wsu.edu
64
+ #
65
+ # Copyright (C) 2013, Alan Genz, All rights reserved.
66
+ #
67
+ # Redistribution and use in source and binary forms, with or without
68
+ # modification, are permitted provided the following conditions are met:
69
+ # 1. Redistributions of source code must retain the above copyright
70
+ # notice, this list of conditions and the following disclaimer.
71
+ # 2. Redistributions in binary form must reproduce the above copyright
72
+ # notice, this list of conditions and the following disclaimer in
73
+ # the documentation and/or other materials provided with the
74
+ # distribution.
75
+ # 3. The contributor name(s) may not be used to endorse or promote
76
+ # products derived from this software without specific prior
77
+ # written permission.
78
+ # THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
79
+ # "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
80
+ # LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
81
+ # FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
82
+ # COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
83
+ # INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
84
+ # BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS
85
+ # OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
86
+ # ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR
87
+ # TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF USE
88
+ # OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
89
+
90
+ # Initialization
91
+ sn = max(1, math.sqrt(nu)); ch, az, bz = _chlrps(sigma, a/sn, b/sn)
92
+ n = len(sigma); N = 10; P = math.ceil(m/N); on = np.ones(P); p = 0; e = 0
93
+ ps = np.sqrt(_primes(5*n*math.log(n+4)/4)); q = ps[:, np.newaxis] # Richtmyer gens.
94
+
95
+ # Randomization loop for ns samples
96
+ c = None; dc = None
97
+ for S in range(N):
98
+ vp = on.copy(); s = np.zeros((n, P))
99
+ for i in range(n):
100
+ x = np.abs(2*np.mod(q[i]*np.arange(1, P+1) + rng.random(), 1)-1) # periodizing transform
101
+ if i == 0:
102
+ r = on
103
+ if nu > 0:
104
+ r = np.sqrt(2*_gaminv(x, nu/2))
105
+ else:
106
+ y = _Phinv(c + x*dc)
107
+ s[i:] += ch[i:, i-1:i] * y
108
+ si = s[i, :]; c = on.copy(); ai = az[i]*r - si; d = on.copy(); bi = bz[i]*r - si
109
+ c[ai <= -9] = 0; tl = abs(ai) < 9; c[tl] = _Phi(ai[tl])
110
+ d[bi <= -9] = 0; tl = abs(bi) < 9; d[tl] = _Phi(bi[tl])
111
+ dc = d - c; vp = vp * dc
112
+ d = (np.mean(vp) - p)/(S + 1); p = p + d; e = (S - 1)*e/(S + 1) + d**2
113
+ e = math.sqrt(e) # error estimate is 3 times std error with N samples.
114
+ return p, e
115
+
116
+
117
+ # Standard statistical normal distribution functions
118
+ def _Phi(z):
119
+ return special.ndtr(z)
120
+
121
+
122
+ def _Phinv(p):
123
+ return special.ndtri(p)
124
+
125
+
126
+ def _chlrps(R, a, b):
127
+ """
128
+ Computes permuted and scaled lower Cholesky factor c for R which may be
129
+ singular, also permuting and scaling integration limit vectors a and b.
130
+ """
131
+ ep = 1e-10 # singularity tolerance
132
+ eps = np.finfo(R.dtype).eps
133
+
134
+ n = len(R); c = R.copy(); ap = a.copy(); bp = b.copy(); d = np.sqrt(np.maximum(np.diag(c), 0))
135
+ for i in range(n):
136
+ if d[i] > 0:
137
+ c[:, i] /= d[i]; c[i, :] /= d[i]
138
+ ap[i] /= d[i]; bp[i] /= d[i]
139
+ y = np.zeros((n, 1)); sqtp = math.sqrt(2*math.pi)
140
+
141
+ for k in range(n):
142
+ im = k; ckk = 0; dem = 1; s = 0
143
+ for i in range(k, n):
144
+ if c[i, i] > eps:
145
+ cii = math.sqrt(max(c[i, i], 0))
146
+ if i > 0: s = c[i, :k] @ y[:k]
147
+ ai = (ap[i]-s)/cii; bi = (bp[i]-s)/cii; de = _Phi(bi)-_Phi(ai)
148
+ if de <= dem:
149
+ ckk = cii; dem = de; am = ai; bm = bi; im = i
150
+ if im > k:
151
+ ap[[im, k]] = ap[[k, im]]; bp[[im, k]] = bp[[k, im]]; c[im, im] = c[k, k]
152
+ t = c[im, :k].copy(); c[im, :k] = c[k, :k]; c[k, :k] = t
153
+ t = c[im+1:, im].copy(); c[im+1:, im] = c[im+1:, k]; c[im+1:, k] = t
154
+ t = c[k+1:im, k].copy(); c[k+1:im, k] = c[im, k+1:im].T; c[im, k+1:im] = t.T
155
+ if ckk > ep*(k+1):
156
+ c[k, k] = ckk; c[k, k+1:] = 0
157
+ for i in range(k+1, n):
158
+ c[i, k] = c[i, k]/ckk; c[i, k+1:i+1] = c[i, k+1:i+1] - c[i, k]*c[k+1:i+1, k].T
159
+ if abs(dem) > ep:
160
+ y[k] = (np.exp(-am**2/2) - np.exp(-bm**2/2)) / (sqtp*dem)
161
+ else:
162
+ y[k] = (am + bm) / 2
163
+ if am < -10:
164
+ y[k] = bm
165
+ elif bm > 10:
166
+ y[k] = am
167
+ c[k, :k+1] /= ckk; ap[k] /= ckk; bp[k] /= ckk
168
+ else:
169
+ c[k:, k] = 0; y[k] = (ap[k] + bp[k])/2
170
+ pass
171
+ return c, ap, bp
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1
+ # DO NOT EDIT THIS FILE!
2
+ # This file was generated by the R script
3
+ # generate_fisher_exact_results_from_r.R
4
+ # The script was run with R version 3.6.2 (2019-12-12) at 2020-11-09 06:16:09
5
+
6
+
7
+ from collections import namedtuple
8
+ import numpy as np
9
+
10
+
11
+ Inf = np.inf
12
+
13
+ Parameters = namedtuple('Parameters',
14
+ ['table', 'confidence_level', 'alternative'])
15
+ RResults = namedtuple('RResults',
16
+ ['pvalue', 'conditional_odds_ratio',
17
+ 'conditional_odds_ratio_ci'])
18
+ data = [
19
+ (Parameters(table=[[100, 2], [1000, 5]],
20
+ confidence_level=0.95,
21
+ alternative='two.sided'),
22
+ RResults(pvalue=0.1300759363430016,
23
+ conditional_odds_ratio=0.25055839934223,
24
+ conditional_odds_ratio_ci=(0.04035202926536294,
25
+ 2.662846672960251))),
26
+ (Parameters(table=[[2, 7], [8, 2]],
27
+ confidence_level=0.95,
28
+ alternative='two.sided'),
29
+ RResults(pvalue=0.02301413756522116,
30
+ conditional_odds_ratio=0.0858623513573622,
31
+ conditional_odds_ratio_ci=(0.004668988338943325,
32
+ 0.895792956493601))),
33
+ (Parameters(table=[[5, 1], [10, 10]],
34
+ confidence_level=0.95,
35
+ alternative='two.sided'),
36
+ RResults(pvalue=0.1973244147157191,
37
+ conditional_odds_ratio=4.725646047336587,
38
+ conditional_odds_ratio_ci=(0.4153910882532168,
39
+ 259.2593661129417))),
40
+ (Parameters(table=[[5, 15], [20, 20]],
41
+ confidence_level=0.95,
42
+ alternative='two.sided'),
43
+ RResults(pvalue=0.09580440012477633,
44
+ conditional_odds_ratio=0.3394396617440851,
45
+ conditional_odds_ratio_ci=(0.08056337526385809,
46
+ 1.22704788545557))),
47
+ (Parameters(table=[[5, 16], [16, 25]],
48
+ confidence_level=0.95,
49
+ alternative='two.sided'),
50
+ RResults(pvalue=0.2697004098849359,
51
+ conditional_odds_ratio=0.4937791394540491,
52
+ conditional_odds_ratio_ci=(0.1176691231650079,
53
+ 1.787463657995973))),
54
+ (Parameters(table=[[10, 5], [10, 1]],
55
+ confidence_level=0.95,
56
+ alternative='two.sided'),
57
+ RResults(pvalue=0.1973244147157192,
58
+ conditional_odds_ratio=0.2116112781158479,
59
+ conditional_odds_ratio_ci=(0.003857141267422399,
60
+ 2.407369893767229))),
61
+ (Parameters(table=[[10, 5], [10, 0]],
62
+ confidence_level=0.95,
63
+ alternative='two.sided'),
64
+ RResults(pvalue=0.06126482213438735,
65
+ conditional_odds_ratio=0,
66
+ conditional_odds_ratio_ci=(0,
67
+ 1.451643573543705))),
68
+ (Parameters(table=[[5, 0], [1, 4]],
69
+ confidence_level=0.95,
70
+ alternative='two.sided'),
71
+ RResults(pvalue=0.04761904761904762,
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+ conditional_odds_ratio=Inf,
73
+ conditional_odds_ratio_ci=(1.024822256141754,
74
+ Inf))),
75
+ (Parameters(table=[[0, 5], [1, 4]],
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+ confidence_level=0.95,
77
+ alternative='two.sided'),
78
+ RResults(pvalue=1,
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+ conditional_odds_ratio=0,
80
+ conditional_odds_ratio_ci=(0,
81
+ 39.00054996869288))),
82
+ (Parameters(table=[[5, 1], [0, 4]],
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+ confidence_level=0.95,
84
+ alternative='two.sided'),
85
+ RResults(pvalue=0.04761904761904761,
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+ conditional_odds_ratio=Inf,
87
+ conditional_odds_ratio_ci=(1.024822256141754,
88
+ Inf))),
89
+ (Parameters(table=[[0, 1], [3, 2]],
90
+ confidence_level=0.95,
91
+ alternative='two.sided'),
92
+ RResults(pvalue=1,
93
+ conditional_odds_ratio=0,
94
+ conditional_odds_ratio_ci=(0,
95
+ 39.00054996869287))),
96
+ (Parameters(table=[[200, 7], [8, 300]],
97
+ confidence_level=0.95,
98
+ alternative='two.sided'),
99
+ RResults(pvalue=2.005657880389071e-122,
100
+ conditional_odds_ratio=977.7866978606228,
101
+ conditional_odds_ratio_ci=(349.2595113327733,
102
+ 3630.382605689872))),
103
+ (Parameters(table=[[28, 21], [6, 1957]],
104
+ confidence_level=0.95,
105
+ alternative='two.sided'),
106
+ RResults(pvalue=5.728437460831947e-44,
107
+ conditional_odds_ratio=425.2403028434684,
108
+ conditional_odds_ratio_ci=(152.4166024390096,
109
+ 1425.700792178893))),
110
+ (Parameters(table=[[190, 800], [200, 900]],
111
+ confidence_level=0.95,
112
+ alternative='two.sided'),
113
+ RResults(pvalue=0.574111858126088,
114
+ conditional_odds_ratio=1.068697577856801,
115
+ conditional_odds_ratio_ci=(0.8520462587912048,
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+ 1.340148950273938))),
117
+ (Parameters(table=[[100, 2], [1000, 5]],
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+ confidence_level=0.99,
119
+ alternative='two.sided'),
120
+ RResults(pvalue=0.1300759363430016,
121
+ conditional_odds_ratio=0.25055839934223,
122
+ conditional_odds_ratio_ci=(0.02502345007115455,
123
+ 6.304424772117853))),
124
+ (Parameters(table=[[2, 7], [8, 2]],
125
+ confidence_level=0.99,
126
+ alternative='two.sided'),
127
+ RResults(pvalue=0.02301413756522116,
128
+ conditional_odds_ratio=0.0858623513573622,
129
+ conditional_odds_ratio_ci=(0.001923034001462487,
130
+ 1.53670836950172))),
131
+ (Parameters(table=[[5, 1], [10, 10]],
132
+ confidence_level=0.99,
133
+ alternative='two.sided'),
134
+ RResults(pvalue=0.1973244147157191,
135
+ conditional_odds_ratio=4.725646047336587,
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+ conditional_odds_ratio_ci=(0.2397970951413721,
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+ 1291.342011095509))),
138
+ (Parameters(table=[[5, 15], [20, 20]],
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+ confidence_level=0.99,
140
+ alternative='two.sided'),
141
+ RResults(pvalue=0.09580440012477633,
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+ conditional_odds_ratio=0.3394396617440851,
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+ conditional_odds_ratio_ci=(0.05127576113762925,
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+ 1.717176678806983))),
145
+ (Parameters(table=[[5, 16], [16, 25]],
146
+ confidence_level=0.99,
147
+ alternative='two.sided'),
148
+ RResults(pvalue=0.2697004098849359,
149
+ conditional_odds_ratio=0.4937791394540491,
150
+ conditional_odds_ratio_ci=(0.07498546954483619,
151
+ 2.506969905199901))),
152
+ (Parameters(table=[[10, 5], [10, 1]],
153
+ confidence_level=0.99,
154
+ alternative='two.sided'),
155
+ RResults(pvalue=0.1973244147157192,
156
+ conditional_odds_ratio=0.2116112781158479,
157
+ conditional_odds_ratio_ci=(0.0007743881879531337,
158
+ 4.170192301163831))),
159
+ (Parameters(table=[[10, 5], [10, 0]],
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+ confidence_level=0.99,
161
+ alternative='two.sided'),
162
+ RResults(pvalue=0.06126482213438735,
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+ conditional_odds_ratio=0,
164
+ conditional_odds_ratio_ci=(0,
165
+ 2.642491011905582))),
166
+ (Parameters(table=[[5, 0], [1, 4]],
167
+ confidence_level=0.99,
168
+ alternative='two.sided'),
169
+ RResults(pvalue=0.04761904761904762,
170
+ conditional_odds_ratio=Inf,
171
+ conditional_odds_ratio_ci=(0.496935393325443,
172
+ Inf))),
173
+ (Parameters(table=[[0, 5], [1, 4]],
174
+ confidence_level=0.99,
175
+ alternative='two.sided'),
176
+ RResults(pvalue=1,
177
+ conditional_odds_ratio=0,
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+ conditional_odds_ratio_ci=(0,
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+ 198.019801980198))),
180
+ (Parameters(table=[[5, 1], [0, 4]],
181
+ confidence_level=0.99,
182
+ alternative='two.sided'),
183
+ RResults(pvalue=0.04761904761904761,
184
+ conditional_odds_ratio=Inf,
185
+ conditional_odds_ratio_ci=(0.496935393325443,
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+ Inf))),
187
+ (Parameters(table=[[0, 1], [3, 2]],
188
+ confidence_level=0.99,
189
+ alternative='two.sided'),
190
+ RResults(pvalue=1,
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+ conditional_odds_ratio=0,
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+ conditional_odds_ratio_ci=(0,
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+ 198.019801980198))),
194
+ (Parameters(table=[[200, 7], [8, 300]],
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+ confidence_level=0.99,
196
+ alternative='two.sided'),
197
+ RResults(pvalue=2.005657880389071e-122,
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+ conditional_odds_ratio=977.7866978606228,
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+ conditional_odds_ratio_ci=(270.0334165523604,
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+ 5461.333333326708))),
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+ (Parameters(table=[[28, 21], [6, 1957]],
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+ confidence_level=0.99,
203
+ alternative='two.sided'),
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+ RResults(pvalue=5.728437460831947e-44,
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+ conditional_odds_ratio=425.2403028434684,
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+ conditional_odds_ratio_ci=(116.7944750275836,
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+ 1931.995993191814))),
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+ (Parameters(table=[[190, 800], [200, 900]],
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+ confidence_level=0.99,
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+ alternative='two.sided'),
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+ RResults(pvalue=0.574111858126088,
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+ conditional_odds_ratio=1.068697577856801,
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+ conditional_odds_ratio_ci=(0.7949398282935892,
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+ 1.436229679394333))),
215
+ (Parameters(table=[[100, 2], [1000, 5]],
216
+ confidence_level=0.95,
217
+ alternative='less'),
218
+ RResults(pvalue=0.1300759363430016,
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+ conditional_odds_ratio=0.25055839934223,
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+ conditional_odds_ratio_ci=(0,
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+ 1.797867027270803))),
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+ (Parameters(table=[[2, 7], [8, 2]],
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+ confidence_level=0.95,
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+ alternative='less'),
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+ RResults(pvalue=0.0185217259520665,
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+ conditional_odds_ratio=0.0858623513573622,
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+ conditional_odds_ratio_ci=(0,
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+ 0.6785254803404526))),
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+ (Parameters(table=[[5, 1], [10, 10]],
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+ confidence_level=0.95,
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+ alternative='less'),
232
+ RResults(pvalue=0.9782608695652173,
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+ conditional_odds_ratio=4.725646047336587,
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+ conditional_odds_ratio_ci=(0,
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+ 127.8497388102893))),
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+ (Parameters(table=[[5, 15], [20, 20]],
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+ confidence_level=0.95,
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+ alternative='less'),
239
+ RResults(pvalue=0.05625775074399956,
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+ conditional_odds_ratio=0.3394396617440851,
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+ conditional_odds_ratio_ci=(0,
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+ 1.032332939718425))),
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+ (Parameters(table=[[5, 16], [16, 25]],
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+ confidence_level=0.95,
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+ alternative='less'),
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+ RResults(pvalue=0.1808979350599346,
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+ conditional_odds_ratio=0.4937791394540491,
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+ conditional_odds_ratio_ci=(0,
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+ 1.502407513296985))),
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+ (Parameters(table=[[10, 5], [10, 1]],
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+ confidence_level=0.95,
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+ alternative='less'),
253
+ RResults(pvalue=0.1652173913043479,
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+ conditional_odds_ratio=0.2116112781158479,
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+ conditional_odds_ratio_ci=(0,
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+ 1.820421051562392))),
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+ (Parameters(table=[[10, 5], [10, 0]],
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+ confidence_level=0.95,
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+ alternative='less'),
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+ RResults(pvalue=0.0565217391304348,
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+ conditional_odds_ratio=0,
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+ conditional_odds_ratio_ci=(0,
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+ 1.06224603077045))),
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+ (Parameters(table=[[5, 0], [1, 4]],
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+ confidence_level=0.95,
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+ alternative='less'),
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+ RResults(pvalue=1,
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+ conditional_odds_ratio=Inf,
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+ conditional_odds_ratio_ci=(0,
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+ Inf))),
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+ (Parameters(table=[[0, 5], [1, 4]],
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+ confidence_level=0.95,
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+ alternative='less'),
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+ RResults(pvalue=0.5,
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+ conditional_odds_ratio=0,
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+ conditional_odds_ratio_ci=(0,
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+ (Parameters(table=[[5, 1], [0, 4]],
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+ confidence_level=0.95,
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+ alternative='less'),
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+ RResults(pvalue=1,
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+ conditional_odds_ratio=Inf,
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+ conditional_odds_ratio_ci=(0,
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+ Inf))),
285
+ (Parameters(table=[[0, 1], [3, 2]],
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+ confidence_level=0.95,
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+ alternative='less'),
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+ RResults(pvalue=0.4999999999999999,
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+ conditional_odds_ratio=0,
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+ conditional_odds_ratio_ci=(0,
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+ 19.00192394479939))),
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+ (Parameters(table=[[200, 7], [8, 300]],
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+ confidence_level=0.95,
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+ alternative='less'),
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+ RResults(pvalue=1,
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+ conditional_odds_ratio=977.7866978606228,
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+ conditional_odds_ratio_ci=(0,
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+ (Parameters(table=[[28, 21], [6, 1957]],
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+ confidence_level=0.95,
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+ alternative='less'),
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+ RResults(pvalue=1,
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+ conditional_odds_ratio=425.2403028434684,
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+ conditional_odds_ratio_ci=(0,
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+ (Parameters(table=[[190, 800], [200, 900]],
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+ alternative='less'),
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+ RResults(pvalue=0.7416227010368963,
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+ conditional_odds_ratio=1.068697577856801,
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+ conditional_odds_ratio_ci=(0,
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+ (Parameters(table=[[100, 2], [1000, 5]],
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+ confidence_level=0.99,
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+ alternative='less'),
316
+ RResults(pvalue=0.1300759363430016,
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+ conditional_odds_ratio=0.25055839934223,
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+ conditional_odds_ratio_ci=(0,
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+ (Parameters(table=[[2, 7], [8, 2]],
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+ confidence_level=0.99,
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+ alternative='less'),
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+ RResults(pvalue=0.0185217259520665,
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+ conditional_odds_ratio=0.0858623513573622,
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+ conditional_odds_ratio_ci=(0,
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+ (Parameters(table=[[5, 1], [10, 10]],
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+ confidence_level=0.99,
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+ alternative='less'),
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+ RResults(pvalue=0.9782608695652173,
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+ conditional_odds_ratio=4.725646047336587,
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+ conditional_odds_ratio_ci=(0,
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+ (Parameters(table=[[5, 15], [20, 20]],
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+ alternative='less'),
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+ RResults(pvalue=0.05625775074399956,
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+ conditional_odds_ratio=0.3394396617440851,
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+ alternative='less'),
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+ RResults(pvalue=0.1652173913043479,
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+ conditional_odds_ratio=0.2116112781158479,
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+ conditional_odds_ratio_ci=(0,
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+ (Parameters(table=[[10, 5], [10, 0]],
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+ confidence_level=0.99,
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+ alternative='less'),
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+ RResults(pvalue=0.0565217391304348,
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+ (Parameters(table=[[5, 0], [1, 4]],
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+ confidence_level=0.99,
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+ RResults(pvalue=1,
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+ conditional_odds_ratio=Inf,
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+ conditional_odds_ratio_ci=(0,
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+ Inf))),
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+ (Parameters(table=[[0, 5], [1, 4]],
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+ conditional_odds_ratio=0,
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+ conditional_odds_ratio_ci=(0,
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+ (Parameters(table=[[5, 1], [0, 4]],
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+ confidence_level=0.99,
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+ alternative='less'),
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+ RResults(pvalue=1,
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+ conditional_odds_ratio=Inf,
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+ conditional_odds_ratio_ci=(0,
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+ Inf))),
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+ (Parameters(table=[[0, 1], [3, 2]],
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+ confidence_level=0.99,
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+ RResults(pvalue=0.4999999999999999,
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+ conditional_odds_ratio=0,
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+ conditional_odds_ratio_ci=(0,
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+ (Parameters(table=[[200, 7], [8, 300]],
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+ confidence_level=0.99,
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+ RResults(pvalue=1,
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+ (Parameters(table=[[5, 1], [0, 4]],
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+ alternative='greater'),
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+ RResults(pvalue=0.0238095238095238,
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+ conditional_odds_ratio=Inf,
479
+ conditional_odds_ratio_ci=(1.487678929918272,
480
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+ (Parameters(table=[[0, 1], [3, 2]],
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+ (Parameters(table=[[200, 7], [8, 300]],
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+ conditional_odds_ratio=977.7866978606228,
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+ conditional_odds_ratio_ci=(397.784359748113,
494
+ Inf))),
495
+ (Parameters(table=[[28, 21], [6, 1957]],
496
+ confidence_level=0.95,
497
+ alternative='greater'),
498
+ RResults(pvalue=5.728437460831983e-44,
499
+ conditional_odds_ratio=425.2403028434684,
500
+ conditional_odds_ratio_ci=(174.7148056880929,
501
+ Inf))),
502
+ (Parameters(table=[[190, 800], [200, 900]],
503
+ confidence_level=0.95,
504
+ alternative='greater'),
505
+ RResults(pvalue=0.2959825901308897,
506
+ conditional_odds_ratio=1.068697577856801,
507
+ conditional_odds_ratio_ci=(0.8828406663967776,
508
+ Inf))),
509
+ (Parameters(table=[[100, 2], [1000, 5]],
510
+ confidence_level=0.99,
511
+ alternative='greater'),
512
+ RResults(pvalue=0.979790445314723,
513
+ conditional_odds_ratio=0.25055839934223,
514
+ conditional_odds_ratio_ci=(0.03045407081240429,
515
+ Inf))),
516
+ (Parameters(table=[[2, 7], [8, 2]],
517
+ confidence_level=0.99,
518
+ alternative='greater'),
519
+ RResults(pvalue=0.9990149169715733,
520
+ conditional_odds_ratio=0.0858623513573622,
521
+ conditional_odds_ratio_ci=(0.002768053063547901,
522
+ Inf))),
523
+ (Parameters(table=[[5, 1], [10, 10]],
524
+ confidence_level=0.99,
525
+ alternative='greater'),
526
+ RResults(pvalue=0.1652173913043478,
527
+ conditional_odds_ratio=4.725646047336587,
528
+ conditional_odds_ratio_ci=(0.2998184792279909,
529
+ Inf))),
530
+ (Parameters(table=[[5, 15], [20, 20]],
531
+ confidence_level=0.99,
532
+ alternative='greater'),
533
+ RResults(pvalue=0.9849086665340765,
534
+ conditional_odds_ratio=0.3394396617440851,
535
+ conditional_odds_ratio_ci=(0.06180414342643172,
536
+ Inf))),
537
+ (Parameters(table=[[5, 16], [16, 25]],
538
+ confidence_level=0.99,
539
+ alternative='greater'),
540
+ RResults(pvalue=0.9330176609214881,
541
+ conditional_odds_ratio=0.4937791394540491,
542
+ conditional_odds_ratio_ci=(0.09037094010066403,
543
+ Inf))),
544
+ (Parameters(table=[[10, 5], [10, 1]],
545
+ confidence_level=0.99,
546
+ alternative='greater'),
547
+ RResults(pvalue=0.9782608695652174,
548
+ conditional_odds_ratio=0.2116112781158479,
549
+ conditional_odds_ratio_ci=(0.001521592095430679,
550
+ Inf))),
551
+ (Parameters(table=[[10, 5], [10, 0]],
552
+ confidence_level=0.99,
553
+ alternative='greater'),
554
+ RResults(pvalue=1,
555
+ conditional_odds_ratio=0,
556
+ conditional_odds_ratio_ci=(0,
557
+ Inf))),
558
+ (Parameters(table=[[5, 0], [1, 4]],
559
+ confidence_level=0.99,
560
+ alternative='greater'),
561
+ RResults(pvalue=0.02380952380952382,
562
+ conditional_odds_ratio=Inf,
563
+ conditional_odds_ratio_ci=(0.6661157890359722,
564
+ Inf))),
565
+ (Parameters(table=[[0, 5], [1, 4]],
566
+ confidence_level=0.99,
567
+ alternative='greater'),
568
+ RResults(pvalue=1,
569
+ conditional_odds_ratio=0,
570
+ conditional_odds_ratio_ci=(0,
571
+ Inf))),
572
+ (Parameters(table=[[5, 1], [0, 4]],
573
+ confidence_level=0.99,
574
+ alternative='greater'),
575
+ RResults(pvalue=0.0238095238095238,
576
+ conditional_odds_ratio=Inf,
577
+ conditional_odds_ratio_ci=(0.6661157890359725,
578
+ Inf))),
579
+ (Parameters(table=[[0, 1], [3, 2]],
580
+ confidence_level=0.99,
581
+ alternative='greater'),
582
+ RResults(pvalue=1,
583
+ conditional_odds_ratio=0,
584
+ conditional_odds_ratio_ci=(0,
585
+ Inf))),
586
+ (Parameters(table=[[200, 7], [8, 300]],
587
+ confidence_level=0.99,
588
+ alternative='greater'),
589
+ RResults(pvalue=2.005657880388915e-122,
590
+ conditional_odds_ratio=977.7866978606228,
591
+ conditional_odds_ratio_ci=(297.9619252357688,
592
+ Inf))),
593
+ (Parameters(table=[[28, 21], [6, 1957]],
594
+ confidence_level=0.99,
595
+ alternative='greater'),
596
+ RResults(pvalue=5.728437460831983e-44,
597
+ conditional_odds_ratio=425.2403028434684,
598
+ conditional_odds_ratio_ci=(130.3213490295859,
599
+ Inf))),
600
+ (Parameters(table=[[190, 800], [200, 900]],
601
+ confidence_level=0.99,
602
+ alternative='greater'),
603
+ RResults(pvalue=0.2959825901308897,
604
+ conditional_odds_ratio=1.068697577856801,
605
+ conditional_odds_ratio_ci=(0.8176272148267533,
606
+ Inf))),
607
+ ]
llava_next/lib/python3.10/site-packages/scipy/stats/tests/data/nist_anova/AtmWtAg.dat ADDED
@@ -0,0 +1,108 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ NIST/ITL StRD
2
+ Dataset Name: AtmWtAg (AtmWtAg.dat)
3
+
4
+
5
+ File Format: ASCII
6
+ Certified Values (lines 41 to 47)
7
+ Data (lines 61 to 108)
8
+
9
+
10
+ Procedure: Analysis of Variance
11
+
12
+
13
+ Reference: Powell, L.J., Murphy, T.J. and Gramlich, J.W. (1982).
14
+ "The Absolute Isotopic Abundance & Atomic Weight
15
+ of a Reference Sample of Silver".
16
+ NBS Journal of Research, 87, pp. 9-19.
17
+
18
+
19
+ Data: 1 Factor
20
+ 2 Treatments
21
+ 24 Replicates/Cell
22
+ 48 Observations
23
+ 7 Constant Leading Digits
24
+ Average Level of Difficulty
25
+ Observed Data
26
+
27
+
28
+ Model: 3 Parameters (mu, tau_1, tau_2)
29
+ y_{ij} = mu + tau_i + epsilon_{ij}
30
+
31
+
32
+
33
+
34
+
35
+
36
+ Certified Values:
37
+
38
+ Source of Sums of Mean
39
+ Variation df Squares Squares F Statistic
40
+
41
+
42
+ Between Instrument 1 3.63834187500000E-09 3.63834187500000E-09 1.59467335677930E+01
43
+ Within Instrument 46 1.04951729166667E-08 2.28155932971014E-10
44
+
45
+ Certified R-Squared 2.57426544538321E-01
46
+
47
+ Certified Residual
48
+ Standard Deviation 1.51048314446410E-05
49
+
50
+
51
+
52
+
53
+
54
+
55
+
56
+
57
+
58
+
59
+
60
+ Data: Instrument AgWt
61
+ 1 107.8681568
62
+ 1 107.8681465
63
+ 1 107.8681572
64
+ 1 107.8681785
65
+ 1 107.8681446
66
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67
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68
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69
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70
+ 1 107.8681587
71
+ 1 107.8681519
72
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73
+ 1 107.8681419
74
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75
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76
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77
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78
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79
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80
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81
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82
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83
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84
+ 1 107.8681477
85
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86
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87
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88
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89
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90
+ 2 107.8681385
91
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92
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93
+ 2 107.8681151
94
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95
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96
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97
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98
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99
+ 2 107.8681334
100
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101
+ 2 107.8681101
102
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103
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104
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105
+ 2 107.8681254
106
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107
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108
+ 2 107.8681368
llava_next/lib/python3.10/site-packages/scipy/stats/tests/data/nist_anova/SiRstv.dat ADDED
@@ -0,0 +1,85 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ NIST/ITL StRD
2
+ Dataset Name: SiRstv (SiRstv.dat)
3
+
4
+
5
+ File Format: ASCII
6
+ Certified Values (lines 41 to 47)
7
+ Data (lines 61 to 85)
8
+
9
+
10
+ Procedure: Analysis of Variance
11
+
12
+
13
+ Reference: Ehrstein, James and Croarkin, M. Carroll.
14
+ Unpublished NIST dataset.
15
+
16
+
17
+ Data: 1 Factor
18
+ 5 Treatments
19
+ 5 Replicates/Cell
20
+ 25 Observations
21
+ 3 Constant Leading Digits
22
+ Lower Level of Difficulty
23
+ Observed Data
24
+
25
+
26
+ Model: 6 Parameters (mu,tau_1, ... , tau_5)
27
+ y_{ij} = mu + tau_i + epsilon_{ij}
28
+
29
+
30
+
31
+
32
+
33
+
34
+
35
+
36
+ Certified Values:
37
+
38
+ Source of Sums of Mean
39
+ Variation df Squares Squares F Statistic
40
+
41
+ Between Instrument 4 5.11462616000000E-02 1.27865654000000E-02 1.18046237440255E+00
42
+ Within Instrument 20 2.16636560000000E-01 1.08318280000000E-02
43
+
44
+ Certified R-Squared 1.90999039051129E-01
45
+
46
+ Certified Residual
47
+ Standard Deviation 1.04076068334656E-01
48
+
49
+
50
+
51
+
52
+
53
+
54
+
55
+
56
+
57
+
58
+
59
+
60
+ Data: Instrument Resistance
61
+ 1 196.3052
62
+ 1 196.1240
63
+ 1 196.1890
64
+ 1 196.2569
65
+ 1 196.3403
66
+ 2 196.3042
67
+ 2 196.3825
68
+ 2 196.1669
69
+ 2 196.3257
70
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71
+ 3 196.1303
72
+ 3 196.2005
73
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74
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75
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76
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77
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78
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79
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80
+ 4 195.9885
81
+ 5 196.2119
82
+ 5 196.1051
83
+ 5 196.1850
84
+ 5 196.0052
85
+ 5 196.2090
llava_next/lib/python3.10/site-packages/scipy/stats/tests/data/nist_anova/SmLs01.dat ADDED
@@ -0,0 +1,249 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ NIST/ITL StRD
2
+ Dataset Name: SmLs01 (SmLs01.dat)
3
+
4
+
5
+ File Format: ASCII
6
+ Certified Values (lines 41 to 47)
7
+ Data (lines 61 to 249)
8
+
9
+
10
+ Procedure: Analysis of Variance
11
+
12
+
13
+ Reference: Simon, Stephen D. and Lesage, James P. (1989).
14
+ "Assessing the Accuracy of ANOVA Calculations in
15
+ Statistical Software".
16
+ Computational Statistics & Data Analysis, 8, pp. 325-332.
17
+
18
+
19
+ Data: 1 Factor
20
+ 9 Treatments
21
+ 21 Replicates/Cell
22
+ 189 Observations
23
+ 1 Constant Leading Digit
24
+ Lower Level of Difficulty
25
+ Generated Data
26
+
27
+
28
+ Model: 10 Parameters (mu,tau_1, ... , tau_9)
29
+ y_{ij} = mu + tau_i + epsilon_{ij}
30
+
31
+
32
+
33
+
34
+
35
+
36
+ Certified Values:
37
+
38
+ Source of Sums of Mean
39
+ Variation df Squares Squares F Statistic
40
+
41
+ Between Treatment 8 1.68000000000000E+00 2.10000000000000E-01 2.10000000000000E+01
42
+ Within Treatment 180 1.80000000000000E+00 1.00000000000000E-02
43
+
44
+ Certified R-Squared 4.82758620689655E-01
45
+
46
+ Certified Residual
47
+ Standard Deviation 1.00000000000000E-01
48
+
49
+
50
+
51
+
52
+
53
+
54
+
55
+
56
+
57
+
58
+
59
+
60
+ Data: Treatment Response
61
+ 1 1.4
62
+ 1 1.3
63
+ 1 1.5
64
+ 1 1.3
65
+ 1 1.5
66
+ 1 1.3
67
+ 1 1.5
68
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69
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70
+ 1 1.3
71
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72
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73
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74
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75
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76
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77
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78
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79
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80
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81
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83
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84
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85
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86
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87
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88
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89
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90
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91
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92
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93
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94
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95
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96
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97
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98
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99
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100
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101
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102
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103
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104
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106
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108
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118
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125
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128
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130
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161
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162
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164
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165
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166
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167
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168
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169
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170
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172
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174
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176
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178
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180
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182
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184
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194
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248
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249
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llava_next/lib/python3.10/site-packages/scipy/stats/tests/data/nist_anova/SmLs03.dat ADDED
The diff for this file is too large to render. See raw diff
 
llava_next/lib/python3.10/site-packages/scipy/stats/tests/data/nist_anova/SmLs04.dat ADDED
@@ -0,0 +1,249 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ NIST/ITL StRD
2
+ Dataset Name: SmLs04 (SmLs04.dat)
3
+
4
+
5
+ File Format: ASCII
6
+ Certified Values (lines 41 to 47)
7
+ Data (lines 61 to 249)
8
+
9
+
10
+ Procedure: Analysis of Variance
11
+
12
+
13
+ Reference: Simon, Stephen D. and Lesage, James P. (1989).
14
+ "Assessing the Accuracy of ANOVA Calculations in
15
+ Statistical Software".
16
+ Computational Statistics & Data Analysis, 8, pp. 325-332.
17
+
18
+
19
+ Data: 1 Factor
20
+ 9 Treatments
21
+ 21 Replicates/Cell
22
+ 189 Observations
23
+ 7 Constant Leading Digits
24
+ Average Level of Difficulty
25
+ Generated Data
26
+
27
+
28
+ Model: 10 Parameters (mu,tau_1, ... , tau_9)
29
+ y_{ij} = mu + tau_i + epsilon_{ij}
30
+
31
+
32
+
33
+
34
+
35
+
36
+ Certified Values:
37
+
38
+ Source of Sums of Mean
39
+ Variation df Squares Squares F Statistic
40
+
41
+ Between Treatment 8 1.68000000000000E+00 2.10000000000000E-01 2.10000000000000E+01
42
+ Within Treatment 180 1.80000000000000E+00 1.00000000000000E-02
43
+
44
+ Certified R-Squared 4.82758620689655E-01
45
+
46
+ Certified Residual
47
+ Standard Deviation 1.00000000000000E-01
48
+
49
+
50
+
51
+
52
+
53
+
54
+
55
+
56
+
57
+
58
+
59
+
60
+ Data: Treatment Response
61
+ 1 1000000.4
62
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llava_next/lib/python3.10/site-packages/scipy/stats/tests/data/nist_anova/SmLs05.dat ADDED
@@ -0,0 +1,1869 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ NIST/ITL StRD
2
+ Dataset Name: SmLs05 (SmLs05.dat)
3
+
4
+
5
+ File Format: ASCII
6
+ Certified Values (lines 41 to 47)
7
+ Data (lines 61 to 1869)
8
+
9
+
10
+ Procedure: Analysis of Variance
11
+
12
+
13
+ Reference: Simon, Stephen D. and Lesage, James P. (1989).
14
+ "Assessing the Accuracy of ANOVA Calculations in
15
+ Statistical Software".
16
+ Computational Statistics & Data Analysis, 8, pp. 325-332.
17
+
18
+
19
+ Data: 1 Factor
20
+ 9 Treatments
21
+ 201 Replicates/Cell
22
+ 1809 Observations
23
+ 7 Constant Leading Digits
24
+ Average Level of Difficulty
25
+ Generated Data
26
+
27
+
28
+ Model: 10 Parameters (mu,tau_1, ... , tau_9)
29
+ y_{ij} = mu + tau_i + epsilon_{ij}
30
+
31
+
32
+
33
+
34
+
35
+
36
+ Certified Values:
37
+
38
+ Source of Sums of Mean
39
+ Variation df Squares Squares F Statistic
40
+
41
+ Between Treatment 8 1.60800000000000E+01 2.01000000000000E+00 2.01000000000000E+02
42
+ Within Treatment 1800 1.80000000000000E+01 1.00000000000000E-02
43
+
44
+ Certified R-Squared 4.71830985915493E-01
45
+
46
+ Certified Residual
47
+ Standard Deviation 1.00000000000000E-01
48
+
49
+
50
+
51
+
52
+
53
+
54
+
55
+
56
+
57
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+
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llava_next/lib/python3.10/site-packages/scipy/stats/tests/data/nist_anova/SmLs06.dat ADDED
The diff for this file is too large to render. See raw diff
 
llava_next/lib/python3.10/site-packages/scipy/stats/tests/data/nist_anova/SmLs07.dat ADDED
@@ -0,0 +1,249 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ NIST/ITL StRD
2
+ Dataset Name: SmLs07 (SmLs07.dat)
3
+
4
+
5
+ File Format: ASCII
6
+ Certified Values (lines 41 to 47)
7
+ Data (lines 61 to 249)
8
+
9
+
10
+ Procedure: Analysis of Variance
11
+
12
+
13
+ Reference: Simon, Stephen D. and Lesage, James P. (1989).
14
+ "Assessing the Accuracy of ANOVA Calculations in
15
+ Statistical Software".
16
+ Computational Statistics & Data Analysis, 8, pp. 325-332.
17
+
18
+
19
+ Data: 1 Factor
20
+ 9 Treatments
21
+ 21 Replicates/Cell
22
+ 189 Observations
23
+ 13 Constant Leading Digits
24
+ Higher Level of Difficulty
25
+ Generated Data
26
+
27
+
28
+ Model: 10 Parameters (mu,tau_1, ... , tau_9)
29
+ y_{ij} = mu + tau_i + epsilon_{ij}
30
+
31
+
32
+
33
+
34
+
35
+
36
+ Certified Values:
37
+
38
+ Source of Sums of Mean
39
+ Variation df Squares Squares F Statistic
40
+
41
+ Between Treatment 8 1.68000000000000E+00 2.10000000000000E-01 2.10000000000000E+01
42
+ Within Treatment 180 1.80000000000000E+00 1.00000000000000E-02
43
+
44
+ Certified R-Squared 4.82758620689655E-01
45
+
46
+ Certified Residual
47
+ Standard Deviation 1.00000000000000E-01
48
+
49
+
50
+
51
+
52
+
53
+
54
+
55
+
56
+
57
+
58
+
59
+
60
+ Data: Treatment Response
61
+ 1 1000000000000.4
62
+ 1 1000000000000.3
63
+ 1 1000000000000.5
64
+ 1 1000000000000.3
65
+ 1 1000000000000.5
66
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llava_next/lib/python3.10/site-packages/scipy/stats/tests/data/nist_anova/SmLs09.dat ADDED
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llava_next/lib/python3.10/site-packages/scipy/stats/tests/data/nist_linregress/Norris.dat ADDED
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1
+ NIST/ITL StRD
2
+ Dataset Name: Norris (Norris.dat)
3
+
4
+ File Format: ASCII
5
+ Certified Values (lines 31 to 46)
6
+ Data (lines 61 to 96)
7
+
8
+ Procedure: Linear Least Squares Regression
9
+
10
+ Reference: Norris, J., NIST.
11
+ Calibration of Ozone Monitors.
12
+
13
+ Data: 1 Response Variable (y)
14
+ 1 Predictor Variable (x)
15
+ 36 Observations
16
+ Lower Level of Difficulty
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+ Observed Data
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+
19
+ Model: Linear Class
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+
22
+ y = B0 + B1*x + e
23
+
24
+
25
+
26
+ Certified Regression Statistics
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+
28
+ Standard Deviation
29
+ Parameter Estimate of Estimate
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+
31
+ B0 -0.262323073774029 0.232818234301152
32
+ B1 1.00211681802045 0.429796848199937E-03
33
+
34
+ Residual
35
+ Standard Deviation 0.884796396144373
36
+
37
+ R-Squared 0.999993745883712
38
+
39
+
40
+ Certified Analysis of Variance Table
41
+
42
+ Source of Degrees of Sums of Mean
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+ Variation Freedom Squares Squares F Statistic
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+
45
+ Regression 1 4255954.13232369 4255954.13232369 5436385.54079785
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+ Residual 34 26.6173985294224 0.782864662630069
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+ Data: y x
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62
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63
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64
+ 888.0 884.6
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1
+ hjson (based on simplejson) is dual-licensed software. It is available under the terms
2
+ of the MIT license, or the Academic Free License version 2.1. The full
3
+ text of each license agreement is included below. This code is also
4
+ licensed to the Python Software Foundation (PSF) under a Contributor
5
+ Agreement.
6
+
7
+ MIT License
8
+ ===========
9
+
10
+ Copyright (c) 2006 Bob Ippolito
11
+ Copyright (c) 2015 Christian Zangl
12
+
13
+ Permission is hereby granted, free of charge, to any person obtaining a copy of
14
+ this software and associated documentation files (the "Software"), to deal in
15
+ the Software without restriction, including without limitation the rights to
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+ use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies
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+ of the Software, and to permit persons to whom the Software is furnished to do
18
+ so, subject to the following conditions:
19
+
20
+ The above copyright notice and this permission notice shall be included in all
21
+ copies or substantial portions of the Software.
22
+
23
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
24
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
25
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
26
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
27
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
28
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
29
+ SOFTWARE.
30
+
31
+ Academic Free License v. 2.1
32
+ ============================
33
+
34
+ Copyright (c) 2006 Bob Ippolito. All rights reserved.
35
+ Copyright (c) 2015 Christian Zangl
36
+
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+ 14) Definition of "You" in This License. "You" throughout this License, whether in upper or lower case, means an individual or a legal entity exercising rights under, and complying with all of the terms of, this License. For legal entities, "You" includes any entity that controls, is controlled by, or is under common control with you. For purposes of this definition, "control" means (i) the power, direct or indirect, to cause the direction or management of such entity, whether by contract or otherwise, or (ii) ownership of fifty percent (50%) or more of the outstanding shares, or (iii) beneficial ownership of such entity.
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parrot/lib/python3.10/site-packages/hjson-3.1.0.dist-info/METADATA ADDED
@@ -0,0 +1,125 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ Metadata-Version: 2.1
2
+ Name: hjson
3
+ Version: 3.1.0
4
+ Summary: Hjson, a user interface for JSON.
5
+ Home-page: http://github.com/hjson/hjson-py
6
+ Author: Christian Zangl
7
+ Author-email: laktak@cdak.net
8
+ License: MIT License
9
+ Keywords: json comments configuration
10
+ Platform: any
11
+ Classifier: Development Status :: 5 - Production/Stable
12
+ Classifier: Intended Audience :: Developers
13
+ Classifier: License :: OSI Approved :: MIT License
14
+ Classifier: License :: OSI Approved :: Academic Free License (AFL)
15
+ Classifier: Programming Language :: Python
16
+ Classifier: Programming Language :: Python :: 2
17
+ Classifier: Programming Language :: Python :: 2.6
18
+ Classifier: Programming Language :: Python :: 2.7
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+ Classifier: Programming Language :: Python :: 3
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+ Classifier: Programming Language :: Python :: 3.3
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+ Classifier: Programming Language :: Python :: 3.4
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+ Classifier: Programming Language :: Python :: 3.5
23
+ Classifier: Programming Language :: Python :: Implementation :: CPython
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+ Classifier: Programming Language :: Python :: Implementation :: PyPy
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+ Classifier: Topic :: Software Development :: Libraries :: Python Modules
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+ License-File: LICENSE.txt
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+
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+ hjson-py
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+ ========
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+
31
+ `Hjson`_, a user interface for JSON
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+
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+ Hjson works with Python 2.5+ and Python 3.3+ (based on `simplejson`_)
34
+
35
+ Installation
36
+ ============
37
+
38
+ - ``pip install hjson``
39
+
40
+ - or download from https://pypi.python.org/pypi/hjson
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+
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+ Commandline
43
+ -----------
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+
45
+ ::
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+
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+ Usage:
48
+ hjson [options]
49
+ hjson [options] <input>
50
+ hjson (-h | --help)
51
+ hjson (-V | --version)
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+
53
+ Options:
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+ -h --help Show this screen.
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+ -j Output as formatted JSON.
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+ -c Output as JSON.
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+ -V --version Show version.
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+
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+ E.g. ``echo '{"json":"obj"}' | hjson``
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+
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+
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+ Usage
63
+ =====
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+
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+ .. code-block:: python
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+
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+ import hjson
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+
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+ Decoding Hjson
70
+ --------------
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+
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+ .. code-block:: python
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+
74
+ text = """{
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+ foo: a
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+ bar: 1
77
+ }"""
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+
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+ hjson.loads(text)
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+
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+ Result:
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+
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+ .. code-block:: python
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+
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+ OrderedDict([('foo', 'a'), ('bar', 1)])
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+
87
+ Encoding Python object hierarchies
88
+ ----------------------------------
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+
90
+ .. code-block:: python
91
+
92
+ hjson.dumps({'foo': 'text', 'bar': (1, 2)})
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+
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+ Result:
95
+
96
+ ::
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+
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+ {
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+ foo: text
100
+ bar:
101
+ [
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+ 1
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+ 2
104
+ ]
105
+ }
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+
107
+ Encoding as JSON
108
+ ----------------
109
+
110
+ Note that this is probably not as performant as the simplejson version.
111
+
112
+ .. code-block:: python
113
+
114
+ hjson.dumpsJSON(['foo', {'bar': ('baz', None, 1.0, 2)}])
115
+
116
+ Result: ``'["foo", {"bar": ["baz", null, 1.0, 2]}]'``
117
+
118
+ API
119
+ ===
120
+
121
+ `hjson-py`_
122
+
123
+ .. _Hjson: https://hjson.github.io
124
+ .. _simplejson: https://github.com/simplejson/simplejson
125
+ .. _hjson-py: http://hjson.github.io/hjson-py/
parrot/lib/python3.10/site-packages/hjson-3.1.0.dist-info/REQUESTED ADDED
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parrot/lib/python3.10/site-packages/hjson-3.1.0.dist-info/WHEEL ADDED
@@ -0,0 +1,5 @@
 
 
 
 
 
 
1
+ Wheel-Version: 1.0
2
+ Generator: bdist_wheel (0.37.1)
3
+ Root-Is-Purelib: true
4
+ Tag: py3-none-any
5
+
parrot/lib/python3.10/site-packages/hjson-3.1.0.dist-info/top_level.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ hjson
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