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- minigpt2/lib/python3.10/site-packages/networkx/classes/digraph.py +1352 -0
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- minigpt2/lib/python3.10/site-packages/networkx/classes/tests/__pycache__/test_filters.cpython-310.pyc +0 -0
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- minigpt2/lib/python3.10/site-packages/networkx/classes/tests/__pycache__/test_multigraph.cpython-310.pyc +0 -0
- minigpt2/lib/python3.10/site-packages/networkx/classes/tests/dispatch_interface.py +185 -0
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- minigpt2/lib/python3.10/site-packages/networkx/readwrite/json_graph/__pycache__/__init__.cpython-310.pyc +0 -0
- parrot/lib/python3.10/site-packages/torch/include/ATen/ops/_efficient_attention_backward_ops.h +28 -0
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- parrot/lib/python3.10/site-packages/torch/include/ATen/ops/_weight_norm_interface_backward_cuda_dispatch.h +23 -0
- parrot/lib/python3.10/site-packages/torch/include/ATen/ops/bincount_ops.h +39 -0
- parrot/lib/python3.10/site-packages/torch/include/ATen/ops/convolution_backward_overrideable_native.h +22 -0
- parrot/lib/python3.10/site-packages/torch/include/ATen/ops/detach_copy_compositeexplicitautogradnonfunctional_dispatch.h +23 -0
- parrot/lib/python3.10/site-packages/torch/include/ATen/ops/embedding_bag_ops.h +39 -0
- parrot/lib/python3.10/site-packages/torch/include/ATen/ops/fractional_max_pool2d_cpu_dispatch.h +25 -0
- parrot/lib/python3.10/site-packages/torch/include/ATen/ops/hinge_embedding_loss_ops.h +28 -0
- parrot/lib/python3.10/site-packages/torch/include/ATen/ops/index_select_native.h +30 -0
- parrot/lib/python3.10/site-packages/torch/include/ATen/ops/leaky_relu_meta.h +27 -0
minigpt2/lib/python3.10/site-packages/networkx/__pycache__/__init__.cpython-310.pyc
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minigpt2/lib/python3.10/site-packages/networkx/__pycache__/convert.cpython-310.pyc
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minigpt2/lib/python3.10/site-packages/networkx/__pycache__/exception.cpython-310.pyc
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minigpt2/lib/python3.10/site-packages/networkx/__pycache__/relabel.cpython-310.pyc
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minigpt2/lib/python3.10/site-packages/networkx/classes/coreviews.py
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|
| 1 |
+
"""Views of core data structures such as nested Mappings (e.g. dict-of-dicts).
|
| 2 |
+
These ``Views`` often restrict element access, with either the entire view or
|
| 3 |
+
layers of nested mappings being read-only.
|
| 4 |
+
"""
|
| 5 |
+
|
| 6 |
+
from collections.abc import Mapping
|
| 7 |
+
|
| 8 |
+
__all__ = [
|
| 9 |
+
"AtlasView",
|
| 10 |
+
"AdjacencyView",
|
| 11 |
+
"MultiAdjacencyView",
|
| 12 |
+
"UnionAtlas",
|
| 13 |
+
"UnionAdjacency",
|
| 14 |
+
"UnionMultiInner",
|
| 15 |
+
"UnionMultiAdjacency",
|
| 16 |
+
"FilterAtlas",
|
| 17 |
+
"FilterAdjacency",
|
| 18 |
+
"FilterMultiInner",
|
| 19 |
+
"FilterMultiAdjacency",
|
| 20 |
+
]
|
| 21 |
+
|
| 22 |
+
|
| 23 |
+
class AtlasView(Mapping):
|
| 24 |
+
"""An AtlasView is a Read-only Mapping of Mappings.
|
| 25 |
+
|
| 26 |
+
It is a View into a dict-of-dict data structure.
|
| 27 |
+
The inner level of dict is read-write. But the
|
| 28 |
+
outer level is read-only.
|
| 29 |
+
|
| 30 |
+
See Also
|
| 31 |
+
========
|
| 32 |
+
AdjacencyView: View into dict-of-dict-of-dict
|
| 33 |
+
MultiAdjacencyView: View into dict-of-dict-of-dict-of-dict
|
| 34 |
+
"""
|
| 35 |
+
|
| 36 |
+
__slots__ = ("_atlas",)
|
| 37 |
+
|
| 38 |
+
def __getstate__(self):
|
| 39 |
+
return {"_atlas": self._atlas}
|
| 40 |
+
|
| 41 |
+
def __setstate__(self, state):
|
| 42 |
+
self._atlas = state["_atlas"]
|
| 43 |
+
|
| 44 |
+
def __init__(self, d):
|
| 45 |
+
self._atlas = d
|
| 46 |
+
|
| 47 |
+
def __len__(self):
|
| 48 |
+
return len(self._atlas)
|
| 49 |
+
|
| 50 |
+
def __iter__(self):
|
| 51 |
+
return iter(self._atlas)
|
| 52 |
+
|
| 53 |
+
def __getitem__(self, key):
|
| 54 |
+
return self._atlas[key]
|
| 55 |
+
|
| 56 |
+
def copy(self):
|
| 57 |
+
return {n: self[n].copy() for n in self._atlas}
|
| 58 |
+
|
| 59 |
+
def __str__(self):
|
| 60 |
+
return str(self._atlas) # {nbr: self[nbr] for nbr in self})
|
| 61 |
+
|
| 62 |
+
def __repr__(self):
|
| 63 |
+
return f"{self.__class__.__name__}({self._atlas!r})"
|
| 64 |
+
|
| 65 |
+
|
| 66 |
+
class AdjacencyView(AtlasView):
|
| 67 |
+
"""An AdjacencyView is a Read-only Map of Maps of Maps.
|
| 68 |
+
|
| 69 |
+
It is a View into a dict-of-dict-of-dict data structure.
|
| 70 |
+
The inner level of dict is read-write. But the
|
| 71 |
+
outer levels are read-only.
|
| 72 |
+
|
| 73 |
+
See Also
|
| 74 |
+
========
|
| 75 |
+
AtlasView: View into dict-of-dict
|
| 76 |
+
MultiAdjacencyView: View into dict-of-dict-of-dict-of-dict
|
| 77 |
+
"""
|
| 78 |
+
|
| 79 |
+
__slots__ = () # Still uses AtlasView slots names _atlas
|
| 80 |
+
|
| 81 |
+
def __getitem__(self, name):
|
| 82 |
+
return AtlasView(self._atlas[name])
|
| 83 |
+
|
| 84 |
+
def copy(self):
|
| 85 |
+
return {n: self[n].copy() for n in self._atlas}
|
| 86 |
+
|
| 87 |
+
|
| 88 |
+
class MultiAdjacencyView(AdjacencyView):
|
| 89 |
+
"""An MultiAdjacencyView is a Read-only Map of Maps of Maps of Maps.
|
| 90 |
+
|
| 91 |
+
It is a View into a dict-of-dict-of-dict-of-dict data structure.
|
| 92 |
+
The inner level of dict is read-write. But the
|
| 93 |
+
outer levels are read-only.
|
| 94 |
+
|
| 95 |
+
See Also
|
| 96 |
+
========
|
| 97 |
+
AtlasView: View into dict-of-dict
|
| 98 |
+
AdjacencyView: View into dict-of-dict-of-dict
|
| 99 |
+
"""
|
| 100 |
+
|
| 101 |
+
__slots__ = () # Still uses AtlasView slots names _atlas
|
| 102 |
+
|
| 103 |
+
def __getitem__(self, name):
|
| 104 |
+
return AdjacencyView(self._atlas[name])
|
| 105 |
+
|
| 106 |
+
def copy(self):
|
| 107 |
+
return {n: self[n].copy() for n in self._atlas}
|
| 108 |
+
|
| 109 |
+
|
| 110 |
+
class UnionAtlas(Mapping):
|
| 111 |
+
"""A read-only union of two atlases (dict-of-dict).
|
| 112 |
+
|
| 113 |
+
The two dict-of-dicts represent the inner dict of
|
| 114 |
+
an Adjacency: `G.succ[node]` and `G.pred[node]`.
|
| 115 |
+
The inner level of dict of both hold attribute key:value
|
| 116 |
+
pairs and is read-write. But the outer level is read-only.
|
| 117 |
+
|
| 118 |
+
See Also
|
| 119 |
+
========
|
| 120 |
+
UnionAdjacency: View into dict-of-dict-of-dict
|
| 121 |
+
UnionMultiAdjacency: View into dict-of-dict-of-dict-of-dict
|
| 122 |
+
"""
|
| 123 |
+
|
| 124 |
+
__slots__ = ("_succ", "_pred")
|
| 125 |
+
|
| 126 |
+
def __getstate__(self):
|
| 127 |
+
return {"_succ": self._succ, "_pred": self._pred}
|
| 128 |
+
|
| 129 |
+
def __setstate__(self, state):
|
| 130 |
+
self._succ = state["_succ"]
|
| 131 |
+
self._pred = state["_pred"]
|
| 132 |
+
|
| 133 |
+
def __init__(self, succ, pred):
|
| 134 |
+
self._succ = succ
|
| 135 |
+
self._pred = pred
|
| 136 |
+
|
| 137 |
+
def __len__(self):
|
| 138 |
+
return len(self._succ.keys() | self._pred.keys())
|
| 139 |
+
|
| 140 |
+
def __iter__(self):
|
| 141 |
+
return iter(set(self._succ.keys()) | set(self._pred.keys()))
|
| 142 |
+
|
| 143 |
+
def __getitem__(self, key):
|
| 144 |
+
try:
|
| 145 |
+
return self._succ[key]
|
| 146 |
+
except KeyError:
|
| 147 |
+
return self._pred[key]
|
| 148 |
+
|
| 149 |
+
def copy(self):
|
| 150 |
+
result = {nbr: dd.copy() for nbr, dd in self._succ.items()}
|
| 151 |
+
for nbr, dd in self._pred.items():
|
| 152 |
+
if nbr in result:
|
| 153 |
+
result[nbr].update(dd)
|
| 154 |
+
else:
|
| 155 |
+
result[nbr] = dd.copy()
|
| 156 |
+
return result
|
| 157 |
+
|
| 158 |
+
def __str__(self):
|
| 159 |
+
return str({nbr: self[nbr] for nbr in self})
|
| 160 |
+
|
| 161 |
+
def __repr__(self):
|
| 162 |
+
return f"{self.__class__.__name__}({self._succ!r}, {self._pred!r})"
|
| 163 |
+
|
| 164 |
+
|
| 165 |
+
class UnionAdjacency(Mapping):
|
| 166 |
+
"""A read-only union of dict Adjacencies as a Map of Maps of Maps.
|
| 167 |
+
|
| 168 |
+
The two input dict-of-dict-of-dicts represent the union of
|
| 169 |
+
`G.succ` and `G.pred`. Return values are UnionAtlas
|
| 170 |
+
The inner level of dict is read-write. But the
|
| 171 |
+
middle and outer levels are read-only.
|
| 172 |
+
|
| 173 |
+
succ : a dict-of-dict-of-dict {node: nbrdict}
|
| 174 |
+
pred : a dict-of-dict-of-dict {node: nbrdict}
|
| 175 |
+
The keys for the two dicts should be the same
|
| 176 |
+
|
| 177 |
+
See Also
|
| 178 |
+
========
|
| 179 |
+
UnionAtlas: View into dict-of-dict
|
| 180 |
+
UnionMultiAdjacency: View into dict-of-dict-of-dict-of-dict
|
| 181 |
+
"""
|
| 182 |
+
|
| 183 |
+
__slots__ = ("_succ", "_pred")
|
| 184 |
+
|
| 185 |
+
def __getstate__(self):
|
| 186 |
+
return {"_succ": self._succ, "_pred": self._pred}
|
| 187 |
+
|
| 188 |
+
def __setstate__(self, state):
|
| 189 |
+
self._succ = state["_succ"]
|
| 190 |
+
self._pred = state["_pred"]
|
| 191 |
+
|
| 192 |
+
def __init__(self, succ, pred):
|
| 193 |
+
# keys must be the same for two input dicts
|
| 194 |
+
assert len(set(succ.keys()) ^ set(pred.keys())) == 0
|
| 195 |
+
self._succ = succ
|
| 196 |
+
self._pred = pred
|
| 197 |
+
|
| 198 |
+
def __len__(self):
|
| 199 |
+
return len(self._succ) # length of each dict should be the same
|
| 200 |
+
|
| 201 |
+
def __iter__(self):
|
| 202 |
+
return iter(self._succ)
|
| 203 |
+
|
| 204 |
+
def __getitem__(self, nbr):
|
| 205 |
+
return UnionAtlas(self._succ[nbr], self._pred[nbr])
|
| 206 |
+
|
| 207 |
+
def copy(self):
|
| 208 |
+
return {n: self[n].copy() for n in self._succ}
|
| 209 |
+
|
| 210 |
+
def __str__(self):
|
| 211 |
+
return str({nbr: self[nbr] for nbr in self})
|
| 212 |
+
|
| 213 |
+
def __repr__(self):
|
| 214 |
+
return f"{self.__class__.__name__}({self._succ!r}, {self._pred!r})"
|
| 215 |
+
|
| 216 |
+
|
| 217 |
+
class UnionMultiInner(UnionAtlas):
|
| 218 |
+
"""A read-only union of two inner dicts of MultiAdjacencies.
|
| 219 |
+
|
| 220 |
+
The two input dict-of-dict-of-dicts represent the union of
|
| 221 |
+
`G.succ[node]` and `G.pred[node]` for MultiDiGraphs.
|
| 222 |
+
Return values are UnionAtlas.
|
| 223 |
+
The inner level of dict is read-write. But the outer levels are read-only.
|
| 224 |
+
|
| 225 |
+
See Also
|
| 226 |
+
========
|
| 227 |
+
UnionAtlas: View into dict-of-dict
|
| 228 |
+
UnionAdjacency: View into dict-of-dict-of-dict
|
| 229 |
+
UnionMultiAdjacency: View into dict-of-dict-of-dict-of-dict
|
| 230 |
+
"""
|
| 231 |
+
|
| 232 |
+
__slots__ = () # Still uses UnionAtlas slots names _succ, _pred
|
| 233 |
+
|
| 234 |
+
def __getitem__(self, node):
|
| 235 |
+
in_succ = node in self._succ
|
| 236 |
+
in_pred = node in self._pred
|
| 237 |
+
if in_succ:
|
| 238 |
+
if in_pred:
|
| 239 |
+
return UnionAtlas(self._succ[node], self._pred[node])
|
| 240 |
+
return UnionAtlas(self._succ[node], {})
|
| 241 |
+
return UnionAtlas({}, self._pred[node])
|
| 242 |
+
|
| 243 |
+
def copy(self):
|
| 244 |
+
nodes = set(self._succ.keys()) | set(self._pred.keys())
|
| 245 |
+
return {n: self[n].copy() for n in nodes}
|
| 246 |
+
|
| 247 |
+
|
| 248 |
+
class UnionMultiAdjacency(UnionAdjacency):
|
| 249 |
+
"""A read-only union of two dict MultiAdjacencies.
|
| 250 |
+
|
| 251 |
+
The two input dict-of-dict-of-dict-of-dicts represent the union of
|
| 252 |
+
`G.succ` and `G.pred` for MultiDiGraphs. Return values are UnionAdjacency.
|
| 253 |
+
The inner level of dict is read-write. But the outer levels are read-only.
|
| 254 |
+
|
| 255 |
+
See Also
|
| 256 |
+
========
|
| 257 |
+
UnionAtlas: View into dict-of-dict
|
| 258 |
+
UnionMultiInner: View into dict-of-dict-of-dict
|
| 259 |
+
"""
|
| 260 |
+
|
| 261 |
+
__slots__ = () # Still uses UnionAdjacency slots names _succ, _pred
|
| 262 |
+
|
| 263 |
+
def __getitem__(self, node):
|
| 264 |
+
return UnionMultiInner(self._succ[node], self._pred[node])
|
| 265 |
+
|
| 266 |
+
|
| 267 |
+
class FilterAtlas(Mapping): # nodedict, nbrdict, keydict
|
| 268 |
+
"""A read-only Mapping of Mappings with filtering criteria for nodes.
|
| 269 |
+
|
| 270 |
+
It is a view into a dict-of-dict data structure, and it selects only
|
| 271 |
+
nodes that meet the criteria defined by ``NODE_OK``.
|
| 272 |
+
|
| 273 |
+
See Also
|
| 274 |
+
========
|
| 275 |
+
FilterAdjacency
|
| 276 |
+
FilterMultiInner
|
| 277 |
+
FilterMultiAdjacency
|
| 278 |
+
"""
|
| 279 |
+
|
| 280 |
+
def __init__(self, d, NODE_OK):
|
| 281 |
+
self._atlas = d
|
| 282 |
+
self.NODE_OK = NODE_OK
|
| 283 |
+
|
| 284 |
+
def __len__(self):
|
| 285 |
+
# check whether NODE_OK stores the number of nodes as `length`
|
| 286 |
+
# or the nodes themselves as a set `nodes`. If not, count the nodes.
|
| 287 |
+
if hasattr(self.NODE_OK, "length"):
|
| 288 |
+
return self.NODE_OK.length
|
| 289 |
+
if hasattr(self.NODE_OK, "nodes"):
|
| 290 |
+
return len(self.NODE_OK.nodes & self._atlas.keys())
|
| 291 |
+
return sum(1 for n in self._atlas if self.NODE_OK(n))
|
| 292 |
+
|
| 293 |
+
def __iter__(self):
|
| 294 |
+
try: # check that NODE_OK has attr 'nodes'
|
| 295 |
+
node_ok_shorter = 2 * len(self.NODE_OK.nodes) < len(self._atlas)
|
| 296 |
+
except AttributeError:
|
| 297 |
+
node_ok_shorter = False
|
| 298 |
+
if node_ok_shorter:
|
| 299 |
+
return (n for n in self.NODE_OK.nodes if n in self._atlas)
|
| 300 |
+
return (n for n in self._atlas if self.NODE_OK(n))
|
| 301 |
+
|
| 302 |
+
def __getitem__(self, key):
|
| 303 |
+
if key in self._atlas and self.NODE_OK(key):
|
| 304 |
+
return self._atlas[key]
|
| 305 |
+
raise KeyError(f"Key {key} not found")
|
| 306 |
+
|
| 307 |
+
def __str__(self):
|
| 308 |
+
return str({nbr: self[nbr] for nbr in self})
|
| 309 |
+
|
| 310 |
+
def __repr__(self):
|
| 311 |
+
return f"{self.__class__.__name__}({self._atlas!r}, {self.NODE_OK!r})"
|
| 312 |
+
|
| 313 |
+
|
| 314 |
+
class FilterAdjacency(Mapping): # edgedict
|
| 315 |
+
"""A read-only Mapping of Mappings with filtering criteria for nodes and edges.
|
| 316 |
+
|
| 317 |
+
It is a view into a dict-of-dict-of-dict data structure, and it selects nodes
|
| 318 |
+
and edges that satisfy specific criteria defined by ``NODE_OK`` and ``EDGE_OK``,
|
| 319 |
+
respectively.
|
| 320 |
+
|
| 321 |
+
See Also
|
| 322 |
+
========
|
| 323 |
+
FilterAtlas
|
| 324 |
+
FilterMultiInner
|
| 325 |
+
FilterMultiAdjacency
|
| 326 |
+
"""
|
| 327 |
+
|
| 328 |
+
def __init__(self, d, NODE_OK, EDGE_OK):
|
| 329 |
+
self._atlas = d
|
| 330 |
+
self.NODE_OK = NODE_OK
|
| 331 |
+
self.EDGE_OK = EDGE_OK
|
| 332 |
+
|
| 333 |
+
def __len__(self):
|
| 334 |
+
# check whether NODE_OK stores the number of nodes as `length`
|
| 335 |
+
# or the nodes themselves as a set `nodes`. If not, count the nodes.
|
| 336 |
+
if hasattr(self.NODE_OK, "length"):
|
| 337 |
+
return self.NODE_OK.length
|
| 338 |
+
if hasattr(self.NODE_OK, "nodes"):
|
| 339 |
+
return len(self.NODE_OK.nodes & self._atlas.keys())
|
| 340 |
+
return sum(1 for n in self._atlas if self.NODE_OK(n))
|
| 341 |
+
|
| 342 |
+
def __iter__(self):
|
| 343 |
+
try: # check that NODE_OK has attr 'nodes'
|
| 344 |
+
node_ok_shorter = 2 * len(self.NODE_OK.nodes) < len(self._atlas)
|
| 345 |
+
except AttributeError:
|
| 346 |
+
node_ok_shorter = False
|
| 347 |
+
if node_ok_shorter:
|
| 348 |
+
return (n for n in self.NODE_OK.nodes if n in self._atlas)
|
| 349 |
+
return (n for n in self._atlas if self.NODE_OK(n))
|
| 350 |
+
|
| 351 |
+
def __getitem__(self, node):
|
| 352 |
+
if node in self._atlas and self.NODE_OK(node):
|
| 353 |
+
|
| 354 |
+
def new_node_ok(nbr):
|
| 355 |
+
return self.NODE_OK(nbr) and self.EDGE_OK(node, nbr)
|
| 356 |
+
|
| 357 |
+
return FilterAtlas(self._atlas[node], new_node_ok)
|
| 358 |
+
raise KeyError(f"Key {node} not found")
|
| 359 |
+
|
| 360 |
+
def __str__(self):
|
| 361 |
+
return str({nbr: self[nbr] for nbr in self})
|
| 362 |
+
|
| 363 |
+
def __repr__(self):
|
| 364 |
+
name = self.__class__.__name__
|
| 365 |
+
return f"{name}({self._atlas!r}, {self.NODE_OK!r}, {self.EDGE_OK!r})"
|
| 366 |
+
|
| 367 |
+
|
| 368 |
+
class FilterMultiInner(FilterAdjacency): # muliedge_seconddict
|
| 369 |
+
"""A read-only Mapping of Mappings with filtering criteria for nodes and edges.
|
| 370 |
+
|
| 371 |
+
It is a view into a dict-of-dict-of-dict-of-dict data structure, and it selects nodes
|
| 372 |
+
and edges that meet specific criteria defined by ``NODE_OK`` and ``EDGE_OK``.
|
| 373 |
+
|
| 374 |
+
See Also
|
| 375 |
+
========
|
| 376 |
+
FilterAtlas
|
| 377 |
+
FilterAdjacency
|
| 378 |
+
FilterMultiAdjacency
|
| 379 |
+
"""
|
| 380 |
+
|
| 381 |
+
def __iter__(self):
|
| 382 |
+
try: # check that NODE_OK has attr 'nodes'
|
| 383 |
+
node_ok_shorter = 2 * len(self.NODE_OK.nodes) < len(self._atlas)
|
| 384 |
+
except AttributeError:
|
| 385 |
+
node_ok_shorter = False
|
| 386 |
+
if node_ok_shorter:
|
| 387 |
+
my_nodes = (n for n in self.NODE_OK.nodes if n in self._atlas)
|
| 388 |
+
else:
|
| 389 |
+
my_nodes = (n for n in self._atlas if self.NODE_OK(n))
|
| 390 |
+
for n in my_nodes:
|
| 391 |
+
some_keys_ok = False
|
| 392 |
+
for key in self._atlas[n]:
|
| 393 |
+
if self.EDGE_OK(n, key):
|
| 394 |
+
some_keys_ok = True
|
| 395 |
+
break
|
| 396 |
+
if some_keys_ok is True:
|
| 397 |
+
yield n
|
| 398 |
+
|
| 399 |
+
def __getitem__(self, nbr):
|
| 400 |
+
if nbr in self._atlas and self.NODE_OK(nbr):
|
| 401 |
+
|
| 402 |
+
def new_node_ok(key):
|
| 403 |
+
return self.EDGE_OK(nbr, key)
|
| 404 |
+
|
| 405 |
+
return FilterAtlas(self._atlas[nbr], new_node_ok)
|
| 406 |
+
raise KeyError(f"Key {nbr} not found")
|
| 407 |
+
|
| 408 |
+
|
| 409 |
+
class FilterMultiAdjacency(FilterAdjacency): # multiedgedict
|
| 410 |
+
"""A read-only Mapping of Mappings with filtering criteria
|
| 411 |
+
for nodes and edges.
|
| 412 |
+
|
| 413 |
+
It is a view into a dict-of-dict-of-dict-of-dict data structure,
|
| 414 |
+
and it selects nodes and edges that satisfy specific criteria
|
| 415 |
+
defined by ``NODE_OK`` and ``EDGE_OK``, respectively.
|
| 416 |
+
|
| 417 |
+
See Also
|
| 418 |
+
========
|
| 419 |
+
FilterAtlas
|
| 420 |
+
FilterAdjacency
|
| 421 |
+
FilterMultiInner
|
| 422 |
+
"""
|
| 423 |
+
|
| 424 |
+
def __getitem__(self, node):
|
| 425 |
+
if node in self._atlas and self.NODE_OK(node):
|
| 426 |
+
|
| 427 |
+
def edge_ok(nbr, key):
|
| 428 |
+
return self.NODE_OK(nbr) and self.EDGE_OK(node, nbr, key)
|
| 429 |
+
|
| 430 |
+
return FilterMultiInner(self._atlas[node], self.NODE_OK, edge_ok)
|
| 431 |
+
raise KeyError(f"Key {node} not found")
|
minigpt2/lib/python3.10/site-packages/networkx/classes/digraph.py
ADDED
|
@@ -0,0 +1,1352 @@
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
| 1 |
+
"""Base class for directed graphs."""
|
| 2 |
+
|
| 3 |
+
from copy import deepcopy
|
| 4 |
+
from functools import cached_property
|
| 5 |
+
|
| 6 |
+
import networkx as nx
|
| 7 |
+
from networkx import convert
|
| 8 |
+
from networkx.classes.coreviews import AdjacencyView
|
| 9 |
+
from networkx.classes.graph import Graph
|
| 10 |
+
from networkx.classes.reportviews import (
|
| 11 |
+
DiDegreeView,
|
| 12 |
+
InDegreeView,
|
| 13 |
+
InEdgeView,
|
| 14 |
+
OutDegreeView,
|
| 15 |
+
OutEdgeView,
|
| 16 |
+
)
|
| 17 |
+
from networkx.exception import NetworkXError
|
| 18 |
+
|
| 19 |
+
__all__ = ["DiGraph"]
|
| 20 |
+
|
| 21 |
+
|
| 22 |
+
class _CachedPropertyResetterAdjAndSucc:
|
| 23 |
+
"""Data Descriptor class that syncs and resets cached properties adj and succ
|
| 24 |
+
|
| 25 |
+
The cached properties `adj` and `succ` are reset whenever `_adj` or `_succ`
|
| 26 |
+
are set to new objects. In addition, the attributes `_succ` and `_adj`
|
| 27 |
+
are synced so these two names point to the same object.
|
| 28 |
+
|
| 29 |
+
Warning: most of the time, when ``G._adj`` is set, ``G._pred`` should also
|
| 30 |
+
be set to maintain a valid data structure. They share datadicts.
|
| 31 |
+
|
| 32 |
+
This object sits on a class and ensures that any instance of that
|
| 33 |
+
class clears its cached properties "succ" and "adj" whenever the
|
| 34 |
+
underlying instance attributes "_succ" or "_adj" are set to a new object.
|
| 35 |
+
It only affects the set process of the obj._adj and obj._succ attribute.
|
| 36 |
+
All get/del operations act as they normally would.
|
| 37 |
+
|
| 38 |
+
For info on Data Descriptors see: https://docs.python.org/3/howto/descriptor.html
|
| 39 |
+
"""
|
| 40 |
+
|
| 41 |
+
def __set__(self, obj, value):
|
| 42 |
+
od = obj.__dict__
|
| 43 |
+
od["_adj"] = value
|
| 44 |
+
od["_succ"] = value
|
| 45 |
+
# reset cached properties
|
| 46 |
+
props = [
|
| 47 |
+
"adj",
|
| 48 |
+
"succ",
|
| 49 |
+
"edges",
|
| 50 |
+
"out_edges",
|
| 51 |
+
"degree",
|
| 52 |
+
"out_degree",
|
| 53 |
+
"in_degree",
|
| 54 |
+
]
|
| 55 |
+
for prop in props:
|
| 56 |
+
if prop in od:
|
| 57 |
+
del od[prop]
|
| 58 |
+
|
| 59 |
+
|
| 60 |
+
class _CachedPropertyResetterPred:
|
| 61 |
+
"""Data Descriptor class for _pred that resets ``pred`` cached_property when needed
|
| 62 |
+
|
| 63 |
+
This assumes that the ``cached_property`` ``G.pred`` should be reset whenever
|
| 64 |
+
``G._pred`` is set to a new value.
|
| 65 |
+
|
| 66 |
+
Warning: most of the time, when ``G._pred`` is set, ``G._adj`` should also
|
| 67 |
+
be set to maintain a valid data structure. They share datadicts.
|
| 68 |
+
|
| 69 |
+
This object sits on a class and ensures that any instance of that
|
| 70 |
+
class clears its cached property "pred" whenever the underlying
|
| 71 |
+
instance attribute "_pred" is set to a new object. It only affects
|
| 72 |
+
the set process of the obj._pred attribute. All get/del operations
|
| 73 |
+
act as they normally would.
|
| 74 |
+
|
| 75 |
+
For info on Data Descriptors see: https://docs.python.org/3/howto/descriptor.html
|
| 76 |
+
"""
|
| 77 |
+
|
| 78 |
+
def __set__(self, obj, value):
|
| 79 |
+
od = obj.__dict__
|
| 80 |
+
od["_pred"] = value
|
| 81 |
+
# reset cached properties
|
| 82 |
+
props = ["pred", "in_edges", "degree", "out_degree", "in_degree"]
|
| 83 |
+
for prop in props:
|
| 84 |
+
if prop in od:
|
| 85 |
+
del od[prop]
|
| 86 |
+
|
| 87 |
+
|
| 88 |
+
class DiGraph(Graph):
|
| 89 |
+
"""
|
| 90 |
+
Base class for directed graphs.
|
| 91 |
+
|
| 92 |
+
A DiGraph stores nodes and edges with optional data, or attributes.
|
| 93 |
+
|
| 94 |
+
DiGraphs hold directed edges. Self loops are allowed but multiple
|
| 95 |
+
(parallel) edges are not.
|
| 96 |
+
|
| 97 |
+
Nodes can be arbitrary (hashable) Python objects with optional
|
| 98 |
+
key/value attributes. By convention `None` is not used as a node.
|
| 99 |
+
|
| 100 |
+
Edges are represented as links between nodes with optional
|
| 101 |
+
key/value attributes.
|
| 102 |
+
|
| 103 |
+
Parameters
|
| 104 |
+
----------
|
| 105 |
+
incoming_graph_data : input graph (optional, default: None)
|
| 106 |
+
Data to initialize graph. If None (default) an empty
|
| 107 |
+
graph is created. The data can be any format that is supported
|
| 108 |
+
by the to_networkx_graph() function, currently including edge list,
|
| 109 |
+
dict of dicts, dict of lists, NetworkX graph, 2D NumPy array, SciPy
|
| 110 |
+
sparse matrix, or PyGraphviz graph.
|
| 111 |
+
|
| 112 |
+
attr : keyword arguments, optional (default= no attributes)
|
| 113 |
+
Attributes to add to graph as key=value pairs.
|
| 114 |
+
|
| 115 |
+
See Also
|
| 116 |
+
--------
|
| 117 |
+
Graph
|
| 118 |
+
MultiGraph
|
| 119 |
+
MultiDiGraph
|
| 120 |
+
|
| 121 |
+
Examples
|
| 122 |
+
--------
|
| 123 |
+
Create an empty graph structure (a "null graph") with no nodes and
|
| 124 |
+
no edges.
|
| 125 |
+
|
| 126 |
+
>>> G = nx.DiGraph()
|
| 127 |
+
|
| 128 |
+
G can be grown in several ways.
|
| 129 |
+
|
| 130 |
+
**Nodes:**
|
| 131 |
+
|
| 132 |
+
Add one node at a time:
|
| 133 |
+
|
| 134 |
+
>>> G.add_node(1)
|
| 135 |
+
|
| 136 |
+
Add the nodes from any container (a list, dict, set or
|
| 137 |
+
even the lines from a file or the nodes from another graph).
|
| 138 |
+
|
| 139 |
+
>>> G.add_nodes_from([2, 3])
|
| 140 |
+
>>> G.add_nodes_from(range(100, 110))
|
| 141 |
+
>>> H = nx.path_graph(10)
|
| 142 |
+
>>> G.add_nodes_from(H)
|
| 143 |
+
|
| 144 |
+
In addition to strings and integers any hashable Python object
|
| 145 |
+
(except None) can represent a node, e.g. a customized node object,
|
| 146 |
+
or even another Graph.
|
| 147 |
+
|
| 148 |
+
>>> G.add_node(H)
|
| 149 |
+
|
| 150 |
+
**Edges:**
|
| 151 |
+
|
| 152 |
+
G can also be grown by adding edges.
|
| 153 |
+
|
| 154 |
+
Add one edge,
|
| 155 |
+
|
| 156 |
+
>>> G.add_edge(1, 2)
|
| 157 |
+
|
| 158 |
+
a list of edges,
|
| 159 |
+
|
| 160 |
+
>>> G.add_edges_from([(1, 2), (1, 3)])
|
| 161 |
+
|
| 162 |
+
or a collection of edges,
|
| 163 |
+
|
| 164 |
+
>>> G.add_edges_from(H.edges)
|
| 165 |
+
|
| 166 |
+
If some edges connect nodes not yet in the graph, the nodes
|
| 167 |
+
are added automatically. There are no errors when adding
|
| 168 |
+
nodes or edges that already exist.
|
| 169 |
+
|
| 170 |
+
**Attributes:**
|
| 171 |
+
|
| 172 |
+
Each graph, node, and edge can hold key/value attribute pairs
|
| 173 |
+
in an associated attribute dictionary (the keys must be hashable).
|
| 174 |
+
By default these are empty, but can be added or changed using
|
| 175 |
+
add_edge, add_node or direct manipulation of the attribute
|
| 176 |
+
dictionaries named graph, node and edge respectively.
|
| 177 |
+
|
| 178 |
+
>>> G = nx.DiGraph(day="Friday")
|
| 179 |
+
>>> G.graph
|
| 180 |
+
{'day': 'Friday'}
|
| 181 |
+
|
| 182 |
+
Add node attributes using add_node(), add_nodes_from() or G.nodes
|
| 183 |
+
|
| 184 |
+
>>> G.add_node(1, time="5pm")
|
| 185 |
+
>>> G.add_nodes_from([3], time="2pm")
|
| 186 |
+
>>> G.nodes[1]
|
| 187 |
+
{'time': '5pm'}
|
| 188 |
+
>>> G.nodes[1]["room"] = 714
|
| 189 |
+
>>> del G.nodes[1]["room"] # remove attribute
|
| 190 |
+
>>> list(G.nodes(data=True))
|
| 191 |
+
[(1, {'time': '5pm'}), (3, {'time': '2pm'})]
|
| 192 |
+
|
| 193 |
+
Add edge attributes using add_edge(), add_edges_from(), subscript
|
| 194 |
+
notation, or G.edges.
|
| 195 |
+
|
| 196 |
+
>>> G.add_edge(1, 2, weight=4.7)
|
| 197 |
+
>>> G.add_edges_from([(3, 4), (4, 5)], color="red")
|
| 198 |
+
>>> G.add_edges_from([(1, 2, {"color": "blue"}), (2, 3, {"weight": 8})])
|
| 199 |
+
>>> G[1][2]["weight"] = 4.7
|
| 200 |
+
>>> G.edges[1, 2]["weight"] = 4
|
| 201 |
+
|
| 202 |
+
Warning: we protect the graph data structure by making `G.edges[1, 2]` a
|
| 203 |
+
read-only dict-like structure. However, you can assign to attributes
|
| 204 |
+
in e.g. `G.edges[1, 2]`. Thus, use 2 sets of brackets to add/change
|
| 205 |
+
data attributes: `G.edges[1, 2]['weight'] = 4`
|
| 206 |
+
(For multigraphs: `MG.edges[u, v, key][name] = value`).
|
| 207 |
+
|
| 208 |
+
**Shortcuts:**
|
| 209 |
+
|
| 210 |
+
Many common graph features allow python syntax to speed reporting.
|
| 211 |
+
|
| 212 |
+
>>> 1 in G # check if node in graph
|
| 213 |
+
True
|
| 214 |
+
>>> [n for n in G if n < 3] # iterate through nodes
|
| 215 |
+
[1, 2]
|
| 216 |
+
>>> len(G) # number of nodes in graph
|
| 217 |
+
5
|
| 218 |
+
|
| 219 |
+
Often the best way to traverse all edges of a graph is via the neighbors.
|
| 220 |
+
The neighbors are reported as an adjacency-dict `G.adj` or `G.adjacency()`
|
| 221 |
+
|
| 222 |
+
>>> for n, nbrsdict in G.adjacency():
|
| 223 |
+
... for nbr, eattr in nbrsdict.items():
|
| 224 |
+
... if "weight" in eattr:
|
| 225 |
+
... # Do something useful with the edges
|
| 226 |
+
... pass
|
| 227 |
+
|
| 228 |
+
But the edges reporting object is often more convenient:
|
| 229 |
+
|
| 230 |
+
>>> for u, v, weight in G.edges(data="weight"):
|
| 231 |
+
... if weight is not None:
|
| 232 |
+
... # Do something useful with the edges
|
| 233 |
+
... pass
|
| 234 |
+
|
| 235 |
+
**Reporting:**
|
| 236 |
+
|
| 237 |
+
Simple graph information is obtained using object-attributes and methods.
|
| 238 |
+
Reporting usually provides views instead of containers to reduce memory
|
| 239 |
+
usage. The views update as the graph is updated similarly to dict-views.
|
| 240 |
+
The objects `nodes`, `edges` and `adj` provide access to data attributes
|
| 241 |
+
via lookup (e.g. `nodes[n]`, `edges[u, v]`, `adj[u][v]`) and iteration
|
| 242 |
+
(e.g. `nodes.items()`, `nodes.data('color')`,
|
| 243 |
+
`nodes.data('color', default='blue')` and similarly for `edges`)
|
| 244 |
+
Views exist for `nodes`, `edges`, `neighbors()`/`adj` and `degree`.
|
| 245 |
+
|
| 246 |
+
For details on these and other miscellaneous methods, see below.
|
| 247 |
+
|
| 248 |
+
**Subclasses (Advanced):**
|
| 249 |
+
|
| 250 |
+
The Graph class uses a dict-of-dict-of-dict data structure.
|
| 251 |
+
The outer dict (node_dict) holds adjacency information keyed by node.
|
| 252 |
+
The next dict (adjlist_dict) represents the adjacency information and holds
|
| 253 |
+
edge data keyed by neighbor. The inner dict (edge_attr_dict) represents
|
| 254 |
+
the edge data and holds edge attribute values keyed by attribute names.
|
| 255 |
+
|
| 256 |
+
Each of these three dicts can be replaced in a subclass by a user defined
|
| 257 |
+
dict-like object. In general, the dict-like features should be
|
| 258 |
+
maintained but extra features can be added. To replace one of the
|
| 259 |
+
dicts create a new graph class by changing the class(!) variable
|
| 260 |
+
holding the factory for that dict-like structure. The variable names are
|
| 261 |
+
node_dict_factory, node_attr_dict_factory, adjlist_inner_dict_factory,
|
| 262 |
+
adjlist_outer_dict_factory, edge_attr_dict_factory and graph_attr_dict_factory.
|
| 263 |
+
|
| 264 |
+
node_dict_factory : function, (default: dict)
|
| 265 |
+
Factory function to be used to create the dict containing node
|
| 266 |
+
attributes, keyed by node id.
|
| 267 |
+
It should require no arguments and return a dict-like object
|
| 268 |
+
|
| 269 |
+
node_attr_dict_factory: function, (default: dict)
|
| 270 |
+
Factory function to be used to create the node attribute
|
| 271 |
+
dict which holds attribute values keyed by attribute name.
|
| 272 |
+
It should require no arguments and return a dict-like object
|
| 273 |
+
|
| 274 |
+
adjlist_outer_dict_factory : function, (default: dict)
|
| 275 |
+
Factory function to be used to create the outer-most dict
|
| 276 |
+
in the data structure that holds adjacency info keyed by node.
|
| 277 |
+
It should require no arguments and return a dict-like object.
|
| 278 |
+
|
| 279 |
+
adjlist_inner_dict_factory : function, optional (default: dict)
|
| 280 |
+
Factory function to be used to create the adjacency list
|
| 281 |
+
dict which holds edge data keyed by neighbor.
|
| 282 |
+
It should require no arguments and return a dict-like object
|
| 283 |
+
|
| 284 |
+
edge_attr_dict_factory : function, optional (default: dict)
|
| 285 |
+
Factory function to be used to create the edge attribute
|
| 286 |
+
dict which holds attribute values keyed by attribute name.
|
| 287 |
+
It should require no arguments and return a dict-like object.
|
| 288 |
+
|
| 289 |
+
graph_attr_dict_factory : function, (default: dict)
|
| 290 |
+
Factory function to be used to create the graph attribute
|
| 291 |
+
dict which holds attribute values keyed by attribute name.
|
| 292 |
+
It should require no arguments and return a dict-like object.
|
| 293 |
+
|
| 294 |
+
Typically, if your extension doesn't impact the data structure all
|
| 295 |
+
methods will inherited without issue except: `to_directed/to_undirected`.
|
| 296 |
+
By default these methods create a DiGraph/Graph class and you probably
|
| 297 |
+
want them to create your extension of a DiGraph/Graph. To facilitate
|
| 298 |
+
this we define two class variables that you can set in your subclass.
|
| 299 |
+
|
| 300 |
+
to_directed_class : callable, (default: DiGraph or MultiDiGraph)
|
| 301 |
+
Class to create a new graph structure in the `to_directed` method.
|
| 302 |
+
If `None`, a NetworkX class (DiGraph or MultiDiGraph) is used.
|
| 303 |
+
|
| 304 |
+
to_undirected_class : callable, (default: Graph or MultiGraph)
|
| 305 |
+
Class to create a new graph structure in the `to_undirected` method.
|
| 306 |
+
If `None`, a NetworkX class (Graph or MultiGraph) is used.
|
| 307 |
+
|
| 308 |
+
**Subclassing Example**
|
| 309 |
+
|
| 310 |
+
Create a low memory graph class that effectively disallows edge
|
| 311 |
+
attributes by using a single attribute dict for all edges.
|
| 312 |
+
This reduces the memory used, but you lose edge attributes.
|
| 313 |
+
|
| 314 |
+
>>> class ThinGraph(nx.Graph):
|
| 315 |
+
... all_edge_dict = {"weight": 1}
|
| 316 |
+
...
|
| 317 |
+
... def single_edge_dict(self):
|
| 318 |
+
... return self.all_edge_dict
|
| 319 |
+
...
|
| 320 |
+
... edge_attr_dict_factory = single_edge_dict
|
| 321 |
+
>>> G = ThinGraph()
|
| 322 |
+
>>> G.add_edge(2, 1)
|
| 323 |
+
>>> G[2][1]
|
| 324 |
+
{'weight': 1}
|
| 325 |
+
>>> G.add_edge(2, 2)
|
| 326 |
+
>>> G[2][1] is G[2][2]
|
| 327 |
+
True
|
| 328 |
+
"""
|
| 329 |
+
|
| 330 |
+
_adj = _CachedPropertyResetterAdjAndSucc() # type: ignore[assignment]
|
| 331 |
+
_succ = _adj # type: ignore[has-type]
|
| 332 |
+
_pred = _CachedPropertyResetterPred()
|
| 333 |
+
|
| 334 |
+
def __init__(self, incoming_graph_data=None, **attr):
|
| 335 |
+
"""Initialize a graph with edges, name, or graph attributes.
|
| 336 |
+
|
| 337 |
+
Parameters
|
| 338 |
+
----------
|
| 339 |
+
incoming_graph_data : input graph (optional, default: None)
|
| 340 |
+
Data to initialize graph. If None (default) an empty
|
| 341 |
+
graph is created. The data can be an edge list, or any
|
| 342 |
+
NetworkX graph object. If the corresponding optional Python
|
| 343 |
+
packages are installed the data can also be a 2D NumPy array, a
|
| 344 |
+
SciPy sparse array, or a PyGraphviz graph.
|
| 345 |
+
|
| 346 |
+
attr : keyword arguments, optional (default= no attributes)
|
| 347 |
+
Attributes to add to graph as key=value pairs.
|
| 348 |
+
|
| 349 |
+
See Also
|
| 350 |
+
--------
|
| 351 |
+
convert
|
| 352 |
+
|
| 353 |
+
Examples
|
| 354 |
+
--------
|
| 355 |
+
>>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc
|
| 356 |
+
>>> G = nx.Graph(name="my graph")
|
| 357 |
+
>>> e = [(1, 2), (2, 3), (3, 4)] # list of edges
|
| 358 |
+
>>> G = nx.Graph(e)
|
| 359 |
+
|
| 360 |
+
Arbitrary graph attribute pairs (key=value) may be assigned
|
| 361 |
+
|
| 362 |
+
>>> G = nx.Graph(e, day="Friday")
|
| 363 |
+
>>> G.graph
|
| 364 |
+
{'day': 'Friday'}
|
| 365 |
+
|
| 366 |
+
"""
|
| 367 |
+
self.graph = self.graph_attr_dict_factory() # dictionary for graph attributes
|
| 368 |
+
self._node = self.node_dict_factory() # dictionary for node attr
|
| 369 |
+
# We store two adjacency lists:
|
| 370 |
+
# the predecessors of node n are stored in the dict self._pred
|
| 371 |
+
# the successors of node n are stored in the dict self._succ=self._adj
|
| 372 |
+
self._adj = self.adjlist_outer_dict_factory() # empty adjacency dict successor
|
| 373 |
+
self._pred = self.adjlist_outer_dict_factory() # predecessor
|
| 374 |
+
# Note: self._succ = self._adj # successor
|
| 375 |
+
|
| 376 |
+
self.__networkx_cache__ = {}
|
| 377 |
+
# attempt to load graph with data
|
| 378 |
+
if incoming_graph_data is not None:
|
| 379 |
+
convert.to_networkx_graph(incoming_graph_data, create_using=self)
|
| 380 |
+
# load graph attributes (must be after convert)
|
| 381 |
+
self.graph.update(attr)
|
| 382 |
+
|
| 383 |
+
@cached_property
|
| 384 |
+
def adj(self):
|
| 385 |
+
"""Graph adjacency object holding the neighbors of each node.
|
| 386 |
+
|
| 387 |
+
This object is a read-only dict-like structure with node keys
|
| 388 |
+
and neighbor-dict values. The neighbor-dict is keyed by neighbor
|
| 389 |
+
to the edge-data-dict. So `G.adj[3][2]['color'] = 'blue'` sets
|
| 390 |
+
the color of the edge `(3, 2)` to `"blue"`.
|
| 391 |
+
|
| 392 |
+
Iterating over G.adj behaves like a dict. Useful idioms include
|
| 393 |
+
`for nbr, datadict in G.adj[n].items():`.
|
| 394 |
+
|
| 395 |
+
The neighbor information is also provided by subscripting the graph.
|
| 396 |
+
So `for nbr, foovalue in G[node].data('foo', default=1):` works.
|
| 397 |
+
|
| 398 |
+
For directed graphs, `G.adj` holds outgoing (successor) info.
|
| 399 |
+
"""
|
| 400 |
+
return AdjacencyView(self._succ)
|
| 401 |
+
|
| 402 |
+
@cached_property
|
| 403 |
+
def succ(self):
|
| 404 |
+
"""Graph adjacency object holding the successors of each node.
|
| 405 |
+
|
| 406 |
+
This object is a read-only dict-like structure with node keys
|
| 407 |
+
and neighbor-dict values. The neighbor-dict is keyed by neighbor
|
| 408 |
+
to the edge-data-dict. So `G.succ[3][2]['color'] = 'blue'` sets
|
| 409 |
+
the color of the edge `(3, 2)` to `"blue"`.
|
| 410 |
+
|
| 411 |
+
Iterating over G.succ behaves like a dict. Useful idioms include
|
| 412 |
+
`for nbr, datadict in G.succ[n].items():`. A data-view not provided
|
| 413 |
+
by dicts also exists: `for nbr, foovalue in G.succ[node].data('foo'):`
|
| 414 |
+
and a default can be set via a `default` argument to the `data` method.
|
| 415 |
+
|
| 416 |
+
The neighbor information is also provided by subscripting the graph.
|
| 417 |
+
So `for nbr, foovalue in G[node].data('foo', default=1):` works.
|
| 418 |
+
|
| 419 |
+
For directed graphs, `G.adj` is identical to `G.succ`.
|
| 420 |
+
"""
|
| 421 |
+
return AdjacencyView(self._succ)
|
| 422 |
+
|
| 423 |
+
@cached_property
|
| 424 |
+
def pred(self):
|
| 425 |
+
"""Graph adjacency object holding the predecessors of each node.
|
| 426 |
+
|
| 427 |
+
This object is a read-only dict-like structure with node keys
|
| 428 |
+
and neighbor-dict values. The neighbor-dict is keyed by neighbor
|
| 429 |
+
to the edge-data-dict. So `G.pred[2][3]['color'] = 'blue'` sets
|
| 430 |
+
the color of the edge `(3, 2)` to `"blue"`.
|
| 431 |
+
|
| 432 |
+
Iterating over G.pred behaves like a dict. Useful idioms include
|
| 433 |
+
`for nbr, datadict in G.pred[n].items():`. A data-view not provided
|
| 434 |
+
by dicts also exists: `for nbr, foovalue in G.pred[node].data('foo'):`
|
| 435 |
+
A default can be set via a `default` argument to the `data` method.
|
| 436 |
+
"""
|
| 437 |
+
return AdjacencyView(self._pred)
|
| 438 |
+
|
| 439 |
+
def add_node(self, node_for_adding, **attr):
|
| 440 |
+
"""Add a single node `node_for_adding` and update node attributes.
|
| 441 |
+
|
| 442 |
+
Parameters
|
| 443 |
+
----------
|
| 444 |
+
node_for_adding : node
|
| 445 |
+
A node can be any hashable Python object except None.
|
| 446 |
+
attr : keyword arguments, optional
|
| 447 |
+
Set or change node attributes using key=value.
|
| 448 |
+
|
| 449 |
+
See Also
|
| 450 |
+
--------
|
| 451 |
+
add_nodes_from
|
| 452 |
+
|
| 453 |
+
Examples
|
| 454 |
+
--------
|
| 455 |
+
>>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc
|
| 456 |
+
>>> G.add_node(1)
|
| 457 |
+
>>> G.add_node("Hello")
|
| 458 |
+
>>> K3 = nx.Graph([(0, 1), (1, 2), (2, 0)])
|
| 459 |
+
>>> G.add_node(K3)
|
| 460 |
+
>>> G.number_of_nodes()
|
| 461 |
+
3
|
| 462 |
+
|
| 463 |
+
Use keywords set/change node attributes:
|
| 464 |
+
|
| 465 |
+
>>> G.add_node(1, size=10)
|
| 466 |
+
>>> G.add_node(3, weight=0.4, UTM=("13S", 382871, 3972649))
|
| 467 |
+
|
| 468 |
+
Notes
|
| 469 |
+
-----
|
| 470 |
+
A hashable object is one that can be used as a key in a Python
|
| 471 |
+
dictionary. This includes strings, numbers, tuples of strings
|
| 472 |
+
and numbers, etc.
|
| 473 |
+
|
| 474 |
+
On many platforms hashable items also include mutables such as
|
| 475 |
+
NetworkX Graphs, though one should be careful that the hash
|
| 476 |
+
doesn't change on mutables.
|
| 477 |
+
"""
|
| 478 |
+
if node_for_adding not in self._succ:
|
| 479 |
+
if node_for_adding is None:
|
| 480 |
+
raise ValueError("None cannot be a node")
|
| 481 |
+
self._succ[node_for_adding] = self.adjlist_inner_dict_factory()
|
| 482 |
+
self._pred[node_for_adding] = self.adjlist_inner_dict_factory()
|
| 483 |
+
attr_dict = self._node[node_for_adding] = self.node_attr_dict_factory()
|
| 484 |
+
attr_dict.update(attr)
|
| 485 |
+
else: # update attr even if node already exists
|
| 486 |
+
self._node[node_for_adding].update(attr)
|
| 487 |
+
nx._clear_cache(self)
|
| 488 |
+
|
| 489 |
+
def add_nodes_from(self, nodes_for_adding, **attr):
|
| 490 |
+
"""Add multiple nodes.
|
| 491 |
+
|
| 492 |
+
Parameters
|
| 493 |
+
----------
|
| 494 |
+
nodes_for_adding : iterable container
|
| 495 |
+
A container of nodes (list, dict, set, etc.).
|
| 496 |
+
OR
|
| 497 |
+
A container of (node, attribute dict) tuples.
|
| 498 |
+
Node attributes are updated using the attribute dict.
|
| 499 |
+
attr : keyword arguments, optional (default= no attributes)
|
| 500 |
+
Update attributes for all nodes in nodes.
|
| 501 |
+
Node attributes specified in nodes as a tuple take
|
| 502 |
+
precedence over attributes specified via keyword arguments.
|
| 503 |
+
|
| 504 |
+
See Also
|
| 505 |
+
--------
|
| 506 |
+
add_node
|
| 507 |
+
|
| 508 |
+
Notes
|
| 509 |
+
-----
|
| 510 |
+
When adding nodes from an iterator over the graph you are changing,
|
| 511 |
+
a `RuntimeError` can be raised with message:
|
| 512 |
+
`RuntimeError: dictionary changed size during iteration`. This
|
| 513 |
+
happens when the graph's underlying dictionary is modified during
|
| 514 |
+
iteration. To avoid this error, evaluate the iterator into a separate
|
| 515 |
+
object, e.g. by using `list(iterator_of_nodes)`, and pass this
|
| 516 |
+
object to `G.add_nodes_from`.
|
| 517 |
+
|
| 518 |
+
Examples
|
| 519 |
+
--------
|
| 520 |
+
>>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc
|
| 521 |
+
>>> G.add_nodes_from("Hello")
|
| 522 |
+
>>> K3 = nx.Graph([(0, 1), (1, 2), (2, 0)])
|
| 523 |
+
>>> G.add_nodes_from(K3)
|
| 524 |
+
>>> sorted(G.nodes(), key=str)
|
| 525 |
+
[0, 1, 2, 'H', 'e', 'l', 'o']
|
| 526 |
+
|
| 527 |
+
Use keywords to update specific node attributes for every node.
|
| 528 |
+
|
| 529 |
+
>>> G.add_nodes_from([1, 2], size=10)
|
| 530 |
+
>>> G.add_nodes_from([3, 4], weight=0.4)
|
| 531 |
+
|
| 532 |
+
Use (node, attrdict) tuples to update attributes for specific nodes.
|
| 533 |
+
|
| 534 |
+
>>> G.add_nodes_from([(1, dict(size=11)), (2, {"color": "blue"})])
|
| 535 |
+
>>> G.nodes[1]["size"]
|
| 536 |
+
11
|
| 537 |
+
>>> H = nx.Graph()
|
| 538 |
+
>>> H.add_nodes_from(G.nodes(data=True))
|
| 539 |
+
>>> H.nodes[1]["size"]
|
| 540 |
+
11
|
| 541 |
+
|
| 542 |
+
Evaluate an iterator over a graph if using it to modify the same graph
|
| 543 |
+
|
| 544 |
+
>>> G = nx.DiGraph([(0, 1), (1, 2), (3, 4)])
|
| 545 |
+
>>> # wrong way - will raise RuntimeError
|
| 546 |
+
>>> # G.add_nodes_from(n + 1 for n in G.nodes)
|
| 547 |
+
>>> # correct way
|
| 548 |
+
>>> G.add_nodes_from(list(n + 1 for n in G.nodes))
|
| 549 |
+
"""
|
| 550 |
+
for n in nodes_for_adding:
|
| 551 |
+
try:
|
| 552 |
+
newnode = n not in self._node
|
| 553 |
+
newdict = attr
|
| 554 |
+
except TypeError:
|
| 555 |
+
n, ndict = n
|
| 556 |
+
newnode = n not in self._node
|
| 557 |
+
newdict = attr.copy()
|
| 558 |
+
newdict.update(ndict)
|
| 559 |
+
if newnode:
|
| 560 |
+
if n is None:
|
| 561 |
+
raise ValueError("None cannot be a node")
|
| 562 |
+
self._succ[n] = self.adjlist_inner_dict_factory()
|
| 563 |
+
self._pred[n] = self.adjlist_inner_dict_factory()
|
| 564 |
+
self._node[n] = self.node_attr_dict_factory()
|
| 565 |
+
self._node[n].update(newdict)
|
| 566 |
+
nx._clear_cache(self)
|
| 567 |
+
|
| 568 |
+
def remove_node(self, n):
|
| 569 |
+
"""Remove node n.
|
| 570 |
+
|
| 571 |
+
Removes the node n and all adjacent edges.
|
| 572 |
+
Attempting to remove a nonexistent node will raise an exception.
|
| 573 |
+
|
| 574 |
+
Parameters
|
| 575 |
+
----------
|
| 576 |
+
n : node
|
| 577 |
+
A node in the graph
|
| 578 |
+
|
| 579 |
+
Raises
|
| 580 |
+
------
|
| 581 |
+
NetworkXError
|
| 582 |
+
If n is not in the graph.
|
| 583 |
+
|
| 584 |
+
See Also
|
| 585 |
+
--------
|
| 586 |
+
remove_nodes_from
|
| 587 |
+
|
| 588 |
+
Examples
|
| 589 |
+
--------
|
| 590 |
+
>>> G = nx.path_graph(3) # or DiGraph, MultiGraph, MultiDiGraph, etc
|
| 591 |
+
>>> list(G.edges)
|
| 592 |
+
[(0, 1), (1, 2)]
|
| 593 |
+
>>> G.remove_node(1)
|
| 594 |
+
>>> list(G.edges)
|
| 595 |
+
[]
|
| 596 |
+
|
| 597 |
+
"""
|
| 598 |
+
try:
|
| 599 |
+
nbrs = self._succ[n]
|
| 600 |
+
del self._node[n]
|
| 601 |
+
except KeyError as err: # NetworkXError if n not in self
|
| 602 |
+
raise NetworkXError(f"The node {n} is not in the digraph.") from err
|
| 603 |
+
for u in nbrs:
|
| 604 |
+
del self._pred[u][n] # remove all edges n-u in digraph
|
| 605 |
+
del self._succ[n] # remove node from succ
|
| 606 |
+
for u in self._pred[n]:
|
| 607 |
+
del self._succ[u][n] # remove all edges n-u in digraph
|
| 608 |
+
del self._pred[n] # remove node from pred
|
| 609 |
+
nx._clear_cache(self)
|
| 610 |
+
|
| 611 |
+
def remove_nodes_from(self, nodes):
|
| 612 |
+
"""Remove multiple nodes.
|
| 613 |
+
|
| 614 |
+
Parameters
|
| 615 |
+
----------
|
| 616 |
+
nodes : iterable container
|
| 617 |
+
A container of nodes (list, dict, set, etc.). If a node
|
| 618 |
+
in the container is not in the graph it is silently ignored.
|
| 619 |
+
|
| 620 |
+
See Also
|
| 621 |
+
--------
|
| 622 |
+
remove_node
|
| 623 |
+
|
| 624 |
+
Notes
|
| 625 |
+
-----
|
| 626 |
+
When removing nodes from an iterator over the graph you are changing,
|
| 627 |
+
a `RuntimeError` will be raised with message:
|
| 628 |
+
`RuntimeError: dictionary changed size during iteration`. This
|
| 629 |
+
happens when the graph's underlying dictionary is modified during
|
| 630 |
+
iteration. To avoid this error, evaluate the iterator into a separate
|
| 631 |
+
object, e.g. by using `list(iterator_of_nodes)`, and pass this
|
| 632 |
+
object to `G.remove_nodes_from`.
|
| 633 |
+
|
| 634 |
+
Examples
|
| 635 |
+
--------
|
| 636 |
+
>>> G = nx.path_graph(3) # or DiGraph, MultiGraph, MultiDiGraph, etc
|
| 637 |
+
>>> e = list(G.nodes)
|
| 638 |
+
>>> e
|
| 639 |
+
[0, 1, 2]
|
| 640 |
+
>>> G.remove_nodes_from(e)
|
| 641 |
+
>>> list(G.nodes)
|
| 642 |
+
[]
|
| 643 |
+
|
| 644 |
+
Evaluate an iterator over a graph if using it to modify the same graph
|
| 645 |
+
|
| 646 |
+
>>> G = nx.DiGraph([(0, 1), (1, 2), (3, 4)])
|
| 647 |
+
>>> # this command will fail, as the graph's dict is modified during iteration
|
| 648 |
+
>>> # G.remove_nodes_from(n for n in G.nodes if n < 2)
|
| 649 |
+
>>> # this command will work, since the dictionary underlying graph is not modified
|
| 650 |
+
>>> G.remove_nodes_from(list(n for n in G.nodes if n < 2))
|
| 651 |
+
"""
|
| 652 |
+
for n in nodes:
|
| 653 |
+
try:
|
| 654 |
+
succs = self._succ[n]
|
| 655 |
+
del self._node[n]
|
| 656 |
+
for u in succs:
|
| 657 |
+
del self._pred[u][n] # remove all edges n-u in digraph
|
| 658 |
+
del self._succ[n] # now remove node
|
| 659 |
+
for u in self._pred[n]:
|
| 660 |
+
del self._succ[u][n] # remove all edges n-u in digraph
|
| 661 |
+
del self._pred[n] # now remove node
|
| 662 |
+
except KeyError:
|
| 663 |
+
pass # silent failure on remove
|
| 664 |
+
nx._clear_cache(self)
|
| 665 |
+
|
| 666 |
+
def add_edge(self, u_of_edge, v_of_edge, **attr):
|
| 667 |
+
"""Add an edge between u and v.
|
| 668 |
+
|
| 669 |
+
The nodes u and v will be automatically added if they are
|
| 670 |
+
not already in the graph.
|
| 671 |
+
|
| 672 |
+
Edge attributes can be specified with keywords or by directly
|
| 673 |
+
accessing the edge's attribute dictionary. See examples below.
|
| 674 |
+
|
| 675 |
+
Parameters
|
| 676 |
+
----------
|
| 677 |
+
u_of_edge, v_of_edge : nodes
|
| 678 |
+
Nodes can be, for example, strings or numbers.
|
| 679 |
+
Nodes must be hashable (and not None) Python objects.
|
| 680 |
+
attr : keyword arguments, optional
|
| 681 |
+
Edge data (or labels or objects) can be assigned using
|
| 682 |
+
keyword arguments.
|
| 683 |
+
|
| 684 |
+
See Also
|
| 685 |
+
--------
|
| 686 |
+
add_edges_from : add a collection of edges
|
| 687 |
+
|
| 688 |
+
Notes
|
| 689 |
+
-----
|
| 690 |
+
Adding an edge that already exists updates the edge data.
|
| 691 |
+
|
| 692 |
+
Many NetworkX algorithms designed for weighted graphs use
|
| 693 |
+
an edge attribute (by default `weight`) to hold a numerical value.
|
| 694 |
+
|
| 695 |
+
Examples
|
| 696 |
+
--------
|
| 697 |
+
The following all add the edge e=(1, 2) to graph G:
|
| 698 |
+
|
| 699 |
+
>>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc
|
| 700 |
+
>>> e = (1, 2)
|
| 701 |
+
>>> G.add_edge(1, 2) # explicit two-node form
|
| 702 |
+
>>> G.add_edge(*e) # single edge as tuple of two nodes
|
| 703 |
+
>>> G.add_edges_from([(1, 2)]) # add edges from iterable container
|
| 704 |
+
|
| 705 |
+
Associate data to edges using keywords:
|
| 706 |
+
|
| 707 |
+
>>> G.add_edge(1, 2, weight=3)
|
| 708 |
+
>>> G.add_edge(1, 3, weight=7, capacity=15, length=342.7)
|
| 709 |
+
|
| 710 |
+
For non-string attribute keys, use subscript notation.
|
| 711 |
+
|
| 712 |
+
>>> G.add_edge(1, 2)
|
| 713 |
+
>>> G[1][2].update({0: 5})
|
| 714 |
+
>>> G.edges[1, 2].update({0: 5})
|
| 715 |
+
"""
|
| 716 |
+
u, v = u_of_edge, v_of_edge
|
| 717 |
+
# add nodes
|
| 718 |
+
if u not in self._succ:
|
| 719 |
+
if u is None:
|
| 720 |
+
raise ValueError("None cannot be a node")
|
| 721 |
+
self._succ[u] = self.adjlist_inner_dict_factory()
|
| 722 |
+
self._pred[u] = self.adjlist_inner_dict_factory()
|
| 723 |
+
self._node[u] = self.node_attr_dict_factory()
|
| 724 |
+
if v not in self._succ:
|
| 725 |
+
if v is None:
|
| 726 |
+
raise ValueError("None cannot be a node")
|
| 727 |
+
self._succ[v] = self.adjlist_inner_dict_factory()
|
| 728 |
+
self._pred[v] = self.adjlist_inner_dict_factory()
|
| 729 |
+
self._node[v] = self.node_attr_dict_factory()
|
| 730 |
+
# add the edge
|
| 731 |
+
datadict = self._adj[u].get(v, self.edge_attr_dict_factory())
|
| 732 |
+
datadict.update(attr)
|
| 733 |
+
self._succ[u][v] = datadict
|
| 734 |
+
self._pred[v][u] = datadict
|
| 735 |
+
nx._clear_cache(self)
|
| 736 |
+
|
| 737 |
+
def add_edges_from(self, ebunch_to_add, **attr):
|
| 738 |
+
"""Add all the edges in ebunch_to_add.
|
| 739 |
+
|
| 740 |
+
Parameters
|
| 741 |
+
----------
|
| 742 |
+
ebunch_to_add : container of edges
|
| 743 |
+
Each edge given in the container will be added to the
|
| 744 |
+
graph. The edges must be given as 2-tuples (u, v) or
|
| 745 |
+
3-tuples (u, v, d) where d is a dictionary containing edge data.
|
| 746 |
+
attr : keyword arguments, optional
|
| 747 |
+
Edge data (or labels or objects) can be assigned using
|
| 748 |
+
keyword arguments.
|
| 749 |
+
|
| 750 |
+
See Also
|
| 751 |
+
--------
|
| 752 |
+
add_edge : add a single edge
|
| 753 |
+
add_weighted_edges_from : convenient way to add weighted edges
|
| 754 |
+
|
| 755 |
+
Notes
|
| 756 |
+
-----
|
| 757 |
+
Adding the same edge twice has no effect but any edge data
|
| 758 |
+
will be updated when each duplicate edge is added.
|
| 759 |
+
|
| 760 |
+
Edge attributes specified in an ebunch take precedence over
|
| 761 |
+
attributes specified via keyword arguments.
|
| 762 |
+
|
| 763 |
+
When adding edges from an iterator over the graph you are changing,
|
| 764 |
+
a `RuntimeError` can be raised with message:
|
| 765 |
+
`RuntimeError: dictionary changed size during iteration`. This
|
| 766 |
+
happens when the graph's underlying dictionary is modified during
|
| 767 |
+
iteration. To avoid this error, evaluate the iterator into a separate
|
| 768 |
+
object, e.g. by using `list(iterator_of_edges)`, and pass this
|
| 769 |
+
object to `G.add_edges_from`.
|
| 770 |
+
|
| 771 |
+
Examples
|
| 772 |
+
--------
|
| 773 |
+
>>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc
|
| 774 |
+
>>> G.add_edges_from([(0, 1), (1, 2)]) # using a list of edge tuples
|
| 775 |
+
>>> e = zip(range(0, 3), range(1, 4))
|
| 776 |
+
>>> G.add_edges_from(e) # Add the path graph 0-1-2-3
|
| 777 |
+
|
| 778 |
+
Associate data to edges
|
| 779 |
+
|
| 780 |
+
>>> G.add_edges_from([(1, 2), (2, 3)], weight=3)
|
| 781 |
+
>>> G.add_edges_from([(3, 4), (1, 4)], label="WN2898")
|
| 782 |
+
|
| 783 |
+
Evaluate an iterator over a graph if using it to modify the same graph
|
| 784 |
+
|
| 785 |
+
>>> G = nx.DiGraph([(1, 2), (2, 3), (3, 4)])
|
| 786 |
+
>>> # Grow graph by one new node, adding edges to all existing nodes.
|
| 787 |
+
>>> # wrong way - will raise RuntimeError
|
| 788 |
+
>>> # G.add_edges_from(((5, n) for n in G.nodes))
|
| 789 |
+
>>> # right way - note that there will be no self-edge for node 5
|
| 790 |
+
>>> G.add_edges_from(list((5, n) for n in G.nodes))
|
| 791 |
+
"""
|
| 792 |
+
for e in ebunch_to_add:
|
| 793 |
+
ne = len(e)
|
| 794 |
+
if ne == 3:
|
| 795 |
+
u, v, dd = e
|
| 796 |
+
elif ne == 2:
|
| 797 |
+
u, v = e
|
| 798 |
+
dd = {}
|
| 799 |
+
else:
|
| 800 |
+
raise NetworkXError(f"Edge tuple {e} must be a 2-tuple or 3-tuple.")
|
| 801 |
+
if u not in self._succ:
|
| 802 |
+
if u is None:
|
| 803 |
+
raise ValueError("None cannot be a node")
|
| 804 |
+
self._succ[u] = self.adjlist_inner_dict_factory()
|
| 805 |
+
self._pred[u] = self.adjlist_inner_dict_factory()
|
| 806 |
+
self._node[u] = self.node_attr_dict_factory()
|
| 807 |
+
if v not in self._succ:
|
| 808 |
+
if v is None:
|
| 809 |
+
raise ValueError("None cannot be a node")
|
| 810 |
+
self._succ[v] = self.adjlist_inner_dict_factory()
|
| 811 |
+
self._pred[v] = self.adjlist_inner_dict_factory()
|
| 812 |
+
self._node[v] = self.node_attr_dict_factory()
|
| 813 |
+
datadict = self._adj[u].get(v, self.edge_attr_dict_factory())
|
| 814 |
+
datadict.update(attr)
|
| 815 |
+
datadict.update(dd)
|
| 816 |
+
self._succ[u][v] = datadict
|
| 817 |
+
self._pred[v][u] = datadict
|
| 818 |
+
nx._clear_cache(self)
|
| 819 |
+
|
| 820 |
+
def remove_edge(self, u, v):
|
| 821 |
+
"""Remove the edge between u and v.
|
| 822 |
+
|
| 823 |
+
Parameters
|
| 824 |
+
----------
|
| 825 |
+
u, v : nodes
|
| 826 |
+
Remove the edge between nodes u and v.
|
| 827 |
+
|
| 828 |
+
Raises
|
| 829 |
+
------
|
| 830 |
+
NetworkXError
|
| 831 |
+
If there is not an edge between u and v.
|
| 832 |
+
|
| 833 |
+
See Also
|
| 834 |
+
--------
|
| 835 |
+
remove_edges_from : remove a collection of edges
|
| 836 |
+
|
| 837 |
+
Examples
|
| 838 |
+
--------
|
| 839 |
+
>>> G = nx.Graph() # or DiGraph, etc
|
| 840 |
+
>>> nx.add_path(G, [0, 1, 2, 3])
|
| 841 |
+
>>> G.remove_edge(0, 1)
|
| 842 |
+
>>> e = (1, 2)
|
| 843 |
+
>>> G.remove_edge(*e) # unpacks e from an edge tuple
|
| 844 |
+
>>> e = (2, 3, {"weight": 7}) # an edge with attribute data
|
| 845 |
+
>>> G.remove_edge(*e[:2]) # select first part of edge tuple
|
| 846 |
+
"""
|
| 847 |
+
try:
|
| 848 |
+
del self._succ[u][v]
|
| 849 |
+
del self._pred[v][u]
|
| 850 |
+
except KeyError as err:
|
| 851 |
+
raise NetworkXError(f"The edge {u}-{v} not in graph.") from err
|
| 852 |
+
nx._clear_cache(self)
|
| 853 |
+
|
| 854 |
+
def remove_edges_from(self, ebunch):
|
| 855 |
+
"""Remove all edges specified in ebunch.
|
| 856 |
+
|
| 857 |
+
Parameters
|
| 858 |
+
----------
|
| 859 |
+
ebunch: list or container of edge tuples
|
| 860 |
+
Each edge given in the list or container will be removed
|
| 861 |
+
from the graph. The edges can be:
|
| 862 |
+
|
| 863 |
+
- 2-tuples (u, v) edge between u and v.
|
| 864 |
+
- 3-tuples (u, v, k) where k is ignored.
|
| 865 |
+
|
| 866 |
+
See Also
|
| 867 |
+
--------
|
| 868 |
+
remove_edge : remove a single edge
|
| 869 |
+
|
| 870 |
+
Notes
|
| 871 |
+
-----
|
| 872 |
+
Will fail silently if an edge in ebunch is not in the graph.
|
| 873 |
+
|
| 874 |
+
Examples
|
| 875 |
+
--------
|
| 876 |
+
>>> G = nx.path_graph(4) # or DiGraph, MultiGraph, MultiDiGraph, etc
|
| 877 |
+
>>> ebunch = [(1, 2), (2, 3)]
|
| 878 |
+
>>> G.remove_edges_from(ebunch)
|
| 879 |
+
"""
|
| 880 |
+
for e in ebunch:
|
| 881 |
+
u, v = e[:2] # ignore edge data
|
| 882 |
+
if u in self._succ and v in self._succ[u]:
|
| 883 |
+
del self._succ[u][v]
|
| 884 |
+
del self._pred[v][u]
|
| 885 |
+
nx._clear_cache(self)
|
| 886 |
+
|
| 887 |
+
def has_successor(self, u, v):
|
| 888 |
+
"""Returns True if node u has successor v.
|
| 889 |
+
|
| 890 |
+
This is true if graph has the edge u->v.
|
| 891 |
+
"""
|
| 892 |
+
return u in self._succ and v in self._succ[u]
|
| 893 |
+
|
| 894 |
+
def has_predecessor(self, u, v):
|
| 895 |
+
"""Returns True if node u has predecessor v.
|
| 896 |
+
|
| 897 |
+
This is true if graph has the edge u<-v.
|
| 898 |
+
"""
|
| 899 |
+
return u in self._pred and v in self._pred[u]
|
| 900 |
+
|
| 901 |
+
def successors(self, n):
|
| 902 |
+
"""Returns an iterator over successor nodes of n.
|
| 903 |
+
|
| 904 |
+
A successor of n is a node m such that there exists a directed
|
| 905 |
+
edge from n to m.
|
| 906 |
+
|
| 907 |
+
Parameters
|
| 908 |
+
----------
|
| 909 |
+
n : node
|
| 910 |
+
A node in the graph
|
| 911 |
+
|
| 912 |
+
Raises
|
| 913 |
+
------
|
| 914 |
+
NetworkXError
|
| 915 |
+
If n is not in the graph.
|
| 916 |
+
|
| 917 |
+
See Also
|
| 918 |
+
--------
|
| 919 |
+
predecessors
|
| 920 |
+
|
| 921 |
+
Notes
|
| 922 |
+
-----
|
| 923 |
+
neighbors() and successors() are the same.
|
| 924 |
+
"""
|
| 925 |
+
try:
|
| 926 |
+
return iter(self._succ[n])
|
| 927 |
+
except KeyError as err:
|
| 928 |
+
raise NetworkXError(f"The node {n} is not in the digraph.") from err
|
| 929 |
+
|
| 930 |
+
# digraph definitions
|
| 931 |
+
neighbors = successors
|
| 932 |
+
|
| 933 |
+
def predecessors(self, n):
|
| 934 |
+
"""Returns an iterator over predecessor nodes of n.
|
| 935 |
+
|
| 936 |
+
A predecessor of n is a node m such that there exists a directed
|
| 937 |
+
edge from m to n.
|
| 938 |
+
|
| 939 |
+
Parameters
|
| 940 |
+
----------
|
| 941 |
+
n : node
|
| 942 |
+
A node in the graph
|
| 943 |
+
|
| 944 |
+
Raises
|
| 945 |
+
------
|
| 946 |
+
NetworkXError
|
| 947 |
+
If n is not in the graph.
|
| 948 |
+
|
| 949 |
+
See Also
|
| 950 |
+
--------
|
| 951 |
+
successors
|
| 952 |
+
"""
|
| 953 |
+
try:
|
| 954 |
+
return iter(self._pred[n])
|
| 955 |
+
except KeyError as err:
|
| 956 |
+
raise NetworkXError(f"The node {n} is not in the digraph.") from err
|
| 957 |
+
|
| 958 |
+
@cached_property
|
| 959 |
+
def edges(self):
|
| 960 |
+
"""An OutEdgeView of the DiGraph as G.edges or G.edges().
|
| 961 |
+
|
| 962 |
+
edges(self, nbunch=None, data=False, default=None)
|
| 963 |
+
|
| 964 |
+
The OutEdgeView provides set-like operations on the edge-tuples
|
| 965 |
+
as well as edge attribute lookup. When called, it also provides
|
| 966 |
+
an EdgeDataView object which allows control of access to edge
|
| 967 |
+
attributes (but does not provide set-like operations).
|
| 968 |
+
Hence, `G.edges[u, v]['color']` provides the value of the color
|
| 969 |
+
attribute for edge `(u, v)` while
|
| 970 |
+
`for (u, v, c) in G.edges.data('color', default='red'):`
|
| 971 |
+
iterates through all the edges yielding the color attribute
|
| 972 |
+
with default `'red'` if no color attribute exists.
|
| 973 |
+
|
| 974 |
+
Parameters
|
| 975 |
+
----------
|
| 976 |
+
nbunch : single node, container, or all nodes (default= all nodes)
|
| 977 |
+
The view will only report edges from these nodes.
|
| 978 |
+
data : string or bool, optional (default=False)
|
| 979 |
+
The edge attribute returned in 3-tuple (u, v, ddict[data]).
|
| 980 |
+
If True, return edge attribute dict in 3-tuple (u, v, ddict).
|
| 981 |
+
If False, return 2-tuple (u, v).
|
| 982 |
+
default : value, optional (default=None)
|
| 983 |
+
Value used for edges that don't have the requested attribute.
|
| 984 |
+
Only relevant if data is not True or False.
|
| 985 |
+
|
| 986 |
+
Returns
|
| 987 |
+
-------
|
| 988 |
+
edges : OutEdgeView
|
| 989 |
+
A view of edge attributes, usually it iterates over (u, v)
|
| 990 |
+
or (u, v, d) tuples of edges, but can also be used for
|
| 991 |
+
attribute lookup as `edges[u, v]['foo']`.
|
| 992 |
+
|
| 993 |
+
See Also
|
| 994 |
+
--------
|
| 995 |
+
in_edges, out_edges
|
| 996 |
+
|
| 997 |
+
Notes
|
| 998 |
+
-----
|
| 999 |
+
Nodes in nbunch that are not in the graph will be (quietly) ignored.
|
| 1000 |
+
For directed graphs this returns the out-edges.
|
| 1001 |
+
|
| 1002 |
+
Examples
|
| 1003 |
+
--------
|
| 1004 |
+
>>> G = nx.DiGraph() # or MultiDiGraph, etc
|
| 1005 |
+
>>> nx.add_path(G, [0, 1, 2])
|
| 1006 |
+
>>> G.add_edge(2, 3, weight=5)
|
| 1007 |
+
>>> [e for e in G.edges]
|
| 1008 |
+
[(0, 1), (1, 2), (2, 3)]
|
| 1009 |
+
>>> G.edges.data() # default data is {} (empty dict)
|
| 1010 |
+
OutEdgeDataView([(0, 1, {}), (1, 2, {}), (2, 3, {'weight': 5})])
|
| 1011 |
+
>>> G.edges.data("weight", default=1)
|
| 1012 |
+
OutEdgeDataView([(0, 1, 1), (1, 2, 1), (2, 3, 5)])
|
| 1013 |
+
>>> G.edges([0, 2]) # only edges originating from these nodes
|
| 1014 |
+
OutEdgeDataView([(0, 1), (2, 3)])
|
| 1015 |
+
>>> G.edges(0) # only edges from node 0
|
| 1016 |
+
OutEdgeDataView([(0, 1)])
|
| 1017 |
+
|
| 1018 |
+
"""
|
| 1019 |
+
return OutEdgeView(self)
|
| 1020 |
+
|
| 1021 |
+
# alias out_edges to edges
|
| 1022 |
+
@cached_property
|
| 1023 |
+
def out_edges(self):
|
| 1024 |
+
return OutEdgeView(self)
|
| 1025 |
+
|
| 1026 |
+
out_edges.__doc__ = edges.__doc__
|
| 1027 |
+
|
| 1028 |
+
@cached_property
|
| 1029 |
+
def in_edges(self):
|
| 1030 |
+
"""A view of the in edges of the graph as G.in_edges or G.in_edges().
|
| 1031 |
+
|
| 1032 |
+
in_edges(self, nbunch=None, data=False, default=None):
|
| 1033 |
+
|
| 1034 |
+
Parameters
|
| 1035 |
+
----------
|
| 1036 |
+
nbunch : single node, container, or all nodes (default= all nodes)
|
| 1037 |
+
The view will only report edges incident to these nodes.
|
| 1038 |
+
data : string or bool, optional (default=False)
|
| 1039 |
+
The edge attribute returned in 3-tuple (u, v, ddict[data]).
|
| 1040 |
+
If True, return edge attribute dict in 3-tuple (u, v, ddict).
|
| 1041 |
+
If False, return 2-tuple (u, v).
|
| 1042 |
+
default : value, optional (default=None)
|
| 1043 |
+
Value used for edges that don't have the requested attribute.
|
| 1044 |
+
Only relevant if data is not True or False.
|
| 1045 |
+
|
| 1046 |
+
Returns
|
| 1047 |
+
-------
|
| 1048 |
+
in_edges : InEdgeView or InEdgeDataView
|
| 1049 |
+
A view of edge attributes, usually it iterates over (u, v)
|
| 1050 |
+
or (u, v, d) tuples of edges, but can also be used for
|
| 1051 |
+
attribute lookup as `edges[u, v]['foo']`.
|
| 1052 |
+
|
| 1053 |
+
Examples
|
| 1054 |
+
--------
|
| 1055 |
+
>>> G = nx.DiGraph()
|
| 1056 |
+
>>> G.add_edge(1, 2, color="blue")
|
| 1057 |
+
>>> G.in_edges()
|
| 1058 |
+
InEdgeView([(1, 2)])
|
| 1059 |
+
>>> G.in_edges(nbunch=2)
|
| 1060 |
+
InEdgeDataView([(1, 2)])
|
| 1061 |
+
|
| 1062 |
+
See Also
|
| 1063 |
+
--------
|
| 1064 |
+
edges
|
| 1065 |
+
"""
|
| 1066 |
+
return InEdgeView(self)
|
| 1067 |
+
|
| 1068 |
+
@cached_property
|
| 1069 |
+
def degree(self):
|
| 1070 |
+
"""A DegreeView for the Graph as G.degree or G.degree().
|
| 1071 |
+
|
| 1072 |
+
The node degree is the number of edges adjacent to the node.
|
| 1073 |
+
The weighted node degree is the sum of the edge weights for
|
| 1074 |
+
edges incident to that node.
|
| 1075 |
+
|
| 1076 |
+
This object provides an iterator for (node, degree) as well as
|
| 1077 |
+
lookup for the degree for a single node.
|
| 1078 |
+
|
| 1079 |
+
Parameters
|
| 1080 |
+
----------
|
| 1081 |
+
nbunch : single node, container, or all nodes (default= all nodes)
|
| 1082 |
+
The view will only report edges incident to these nodes.
|
| 1083 |
+
|
| 1084 |
+
weight : string or None, optional (default=None)
|
| 1085 |
+
The name of an edge attribute that holds the numerical value used
|
| 1086 |
+
as a weight. If None, then each edge has weight 1.
|
| 1087 |
+
The degree is the sum of the edge weights adjacent to the node.
|
| 1088 |
+
|
| 1089 |
+
Returns
|
| 1090 |
+
-------
|
| 1091 |
+
DiDegreeView or int
|
| 1092 |
+
If multiple nodes are requested (the default), returns a `DiDegreeView`
|
| 1093 |
+
mapping nodes to their degree.
|
| 1094 |
+
If a single node is requested, returns the degree of the node as an integer.
|
| 1095 |
+
|
| 1096 |
+
See Also
|
| 1097 |
+
--------
|
| 1098 |
+
in_degree, out_degree
|
| 1099 |
+
|
| 1100 |
+
Examples
|
| 1101 |
+
--------
|
| 1102 |
+
>>> G = nx.DiGraph() # or MultiDiGraph
|
| 1103 |
+
>>> nx.add_path(G, [0, 1, 2, 3])
|
| 1104 |
+
>>> G.degree(0) # node 0 with degree 1
|
| 1105 |
+
1
|
| 1106 |
+
>>> list(G.degree([0, 1, 2]))
|
| 1107 |
+
[(0, 1), (1, 2), (2, 2)]
|
| 1108 |
+
|
| 1109 |
+
"""
|
| 1110 |
+
return DiDegreeView(self)
|
| 1111 |
+
|
| 1112 |
+
@cached_property
|
| 1113 |
+
def in_degree(self):
|
| 1114 |
+
"""An InDegreeView for (node, in_degree) or in_degree for single node.
|
| 1115 |
+
|
| 1116 |
+
The node in_degree is the number of edges pointing to the node.
|
| 1117 |
+
The weighted node degree is the sum of the edge weights for
|
| 1118 |
+
edges incident to that node.
|
| 1119 |
+
|
| 1120 |
+
This object provides an iteration over (node, in_degree) as well as
|
| 1121 |
+
lookup for the degree for a single node.
|
| 1122 |
+
|
| 1123 |
+
Parameters
|
| 1124 |
+
----------
|
| 1125 |
+
nbunch : single node, container, or all nodes (default= all nodes)
|
| 1126 |
+
The view will only report edges incident to these nodes.
|
| 1127 |
+
|
| 1128 |
+
weight : string or None, optional (default=None)
|
| 1129 |
+
The name of an edge attribute that holds the numerical value used
|
| 1130 |
+
as a weight. If None, then each edge has weight 1.
|
| 1131 |
+
The degree is the sum of the edge weights adjacent to the node.
|
| 1132 |
+
|
| 1133 |
+
Returns
|
| 1134 |
+
-------
|
| 1135 |
+
If a single node is requested
|
| 1136 |
+
deg : int
|
| 1137 |
+
In-degree of the node
|
| 1138 |
+
|
| 1139 |
+
OR if multiple nodes are requested
|
| 1140 |
+
nd_iter : iterator
|
| 1141 |
+
The iterator returns two-tuples of (node, in-degree).
|
| 1142 |
+
|
| 1143 |
+
See Also
|
| 1144 |
+
--------
|
| 1145 |
+
degree, out_degree
|
| 1146 |
+
|
| 1147 |
+
Examples
|
| 1148 |
+
--------
|
| 1149 |
+
>>> G = nx.DiGraph()
|
| 1150 |
+
>>> nx.add_path(G, [0, 1, 2, 3])
|
| 1151 |
+
>>> G.in_degree(0) # node 0 with degree 0
|
| 1152 |
+
0
|
| 1153 |
+
>>> list(G.in_degree([0, 1, 2]))
|
| 1154 |
+
[(0, 0), (1, 1), (2, 1)]
|
| 1155 |
+
|
| 1156 |
+
"""
|
| 1157 |
+
return InDegreeView(self)
|
| 1158 |
+
|
| 1159 |
+
@cached_property
|
| 1160 |
+
def out_degree(self):
|
| 1161 |
+
"""An OutDegreeView for (node, out_degree)
|
| 1162 |
+
|
| 1163 |
+
The node out_degree is the number of edges pointing out of the node.
|
| 1164 |
+
The weighted node degree is the sum of the edge weights for
|
| 1165 |
+
edges incident to that node.
|
| 1166 |
+
|
| 1167 |
+
This object provides an iterator over (node, out_degree) as well as
|
| 1168 |
+
lookup for the degree for a single node.
|
| 1169 |
+
|
| 1170 |
+
Parameters
|
| 1171 |
+
----------
|
| 1172 |
+
nbunch : single node, container, or all nodes (default= all nodes)
|
| 1173 |
+
The view will only report edges incident to these nodes.
|
| 1174 |
+
|
| 1175 |
+
weight : string or None, optional (default=None)
|
| 1176 |
+
The name of an edge attribute that holds the numerical value used
|
| 1177 |
+
as a weight. If None, then each edge has weight 1.
|
| 1178 |
+
The degree is the sum of the edge weights adjacent to the node.
|
| 1179 |
+
|
| 1180 |
+
Returns
|
| 1181 |
+
-------
|
| 1182 |
+
If a single node is requested
|
| 1183 |
+
deg : int
|
| 1184 |
+
Out-degree of the node
|
| 1185 |
+
|
| 1186 |
+
OR if multiple nodes are requested
|
| 1187 |
+
nd_iter : iterator
|
| 1188 |
+
The iterator returns two-tuples of (node, out-degree).
|
| 1189 |
+
|
| 1190 |
+
See Also
|
| 1191 |
+
--------
|
| 1192 |
+
degree, in_degree
|
| 1193 |
+
|
| 1194 |
+
Examples
|
| 1195 |
+
--------
|
| 1196 |
+
>>> G = nx.DiGraph()
|
| 1197 |
+
>>> nx.add_path(G, [0, 1, 2, 3])
|
| 1198 |
+
>>> G.out_degree(0) # node 0 with degree 1
|
| 1199 |
+
1
|
| 1200 |
+
>>> list(G.out_degree([0, 1, 2]))
|
| 1201 |
+
[(0, 1), (1, 1), (2, 1)]
|
| 1202 |
+
|
| 1203 |
+
"""
|
| 1204 |
+
return OutDegreeView(self)
|
| 1205 |
+
|
| 1206 |
+
def clear(self):
|
| 1207 |
+
"""Remove all nodes and edges from the graph.
|
| 1208 |
+
|
| 1209 |
+
This also removes the name, and all graph, node, and edge attributes.
|
| 1210 |
+
|
| 1211 |
+
Examples
|
| 1212 |
+
--------
|
| 1213 |
+
>>> G = nx.path_graph(4) # or DiGraph, MultiGraph, MultiDiGraph, etc
|
| 1214 |
+
>>> G.clear()
|
| 1215 |
+
>>> list(G.nodes)
|
| 1216 |
+
[]
|
| 1217 |
+
>>> list(G.edges)
|
| 1218 |
+
[]
|
| 1219 |
+
|
| 1220 |
+
"""
|
| 1221 |
+
self._succ.clear()
|
| 1222 |
+
self._pred.clear()
|
| 1223 |
+
self._node.clear()
|
| 1224 |
+
self.graph.clear()
|
| 1225 |
+
nx._clear_cache(self)
|
| 1226 |
+
|
| 1227 |
+
def clear_edges(self):
|
| 1228 |
+
"""Remove all edges from the graph without altering nodes.
|
| 1229 |
+
|
| 1230 |
+
Examples
|
| 1231 |
+
--------
|
| 1232 |
+
>>> G = nx.path_graph(4) # or DiGraph, MultiGraph, MultiDiGraph, etc
|
| 1233 |
+
>>> G.clear_edges()
|
| 1234 |
+
>>> list(G.nodes)
|
| 1235 |
+
[0, 1, 2, 3]
|
| 1236 |
+
>>> list(G.edges)
|
| 1237 |
+
[]
|
| 1238 |
+
|
| 1239 |
+
"""
|
| 1240 |
+
for predecessor_dict in self._pred.values():
|
| 1241 |
+
predecessor_dict.clear()
|
| 1242 |
+
for successor_dict in self._succ.values():
|
| 1243 |
+
successor_dict.clear()
|
| 1244 |
+
nx._clear_cache(self)
|
| 1245 |
+
|
| 1246 |
+
def is_multigraph(self):
|
| 1247 |
+
"""Returns True if graph is a multigraph, False otherwise."""
|
| 1248 |
+
return False
|
| 1249 |
+
|
| 1250 |
+
def is_directed(self):
|
| 1251 |
+
"""Returns True if graph is directed, False otherwise."""
|
| 1252 |
+
return True
|
| 1253 |
+
|
| 1254 |
+
def to_undirected(self, reciprocal=False, as_view=False):
|
| 1255 |
+
"""Returns an undirected representation of the digraph.
|
| 1256 |
+
|
| 1257 |
+
Parameters
|
| 1258 |
+
----------
|
| 1259 |
+
reciprocal : bool (optional)
|
| 1260 |
+
If True only keep edges that appear in both directions
|
| 1261 |
+
in the original digraph.
|
| 1262 |
+
as_view : bool (optional, default=False)
|
| 1263 |
+
If True return an undirected view of the original directed graph.
|
| 1264 |
+
|
| 1265 |
+
Returns
|
| 1266 |
+
-------
|
| 1267 |
+
G : Graph
|
| 1268 |
+
An undirected graph with the same name and nodes and
|
| 1269 |
+
with edge (u, v, data) if either (u, v, data) or (v, u, data)
|
| 1270 |
+
is in the digraph. If both edges exist in digraph and
|
| 1271 |
+
their edge data is different, only one edge is created
|
| 1272 |
+
with an arbitrary choice of which edge data to use.
|
| 1273 |
+
You must check and correct for this manually if desired.
|
| 1274 |
+
|
| 1275 |
+
See Also
|
| 1276 |
+
--------
|
| 1277 |
+
Graph, copy, add_edge, add_edges_from
|
| 1278 |
+
|
| 1279 |
+
Notes
|
| 1280 |
+
-----
|
| 1281 |
+
If edges in both directions (u, v) and (v, u) exist in the
|
| 1282 |
+
graph, attributes for the new undirected edge will be a combination of
|
| 1283 |
+
the attributes of the directed edges. The edge data is updated
|
| 1284 |
+
in the (arbitrary) order that the edges are encountered. For
|
| 1285 |
+
more customized control of the edge attributes use add_edge().
|
| 1286 |
+
|
| 1287 |
+
This returns a "deepcopy" of the edge, node, and
|
| 1288 |
+
graph attributes which attempts to completely copy
|
| 1289 |
+
all of the data and references.
|
| 1290 |
+
|
| 1291 |
+
This is in contrast to the similar G=DiGraph(D) which returns a
|
| 1292 |
+
shallow copy of the data.
|
| 1293 |
+
|
| 1294 |
+
See the Python copy module for more information on shallow
|
| 1295 |
+
and deep copies, https://docs.python.org/3/library/copy.html.
|
| 1296 |
+
|
| 1297 |
+
Warning: If you have subclassed DiGraph to use dict-like objects
|
| 1298 |
+
in the data structure, those changes do not transfer to the
|
| 1299 |
+
Graph created by this method.
|
| 1300 |
+
|
| 1301 |
+
Examples
|
| 1302 |
+
--------
|
| 1303 |
+
>>> G = nx.path_graph(2) # or MultiGraph, etc
|
| 1304 |
+
>>> H = G.to_directed()
|
| 1305 |
+
>>> list(H.edges)
|
| 1306 |
+
[(0, 1), (1, 0)]
|
| 1307 |
+
>>> G2 = H.to_undirected()
|
| 1308 |
+
>>> list(G2.edges)
|
| 1309 |
+
[(0, 1)]
|
| 1310 |
+
"""
|
| 1311 |
+
graph_class = self.to_undirected_class()
|
| 1312 |
+
if as_view is True:
|
| 1313 |
+
return nx.graphviews.generic_graph_view(self, graph_class)
|
| 1314 |
+
# deepcopy when not a view
|
| 1315 |
+
G = graph_class()
|
| 1316 |
+
G.graph.update(deepcopy(self.graph))
|
| 1317 |
+
G.add_nodes_from((n, deepcopy(d)) for n, d in self._node.items())
|
| 1318 |
+
if reciprocal is True:
|
| 1319 |
+
G.add_edges_from(
|
| 1320 |
+
(u, v, deepcopy(d))
|
| 1321 |
+
for u, nbrs in self._adj.items()
|
| 1322 |
+
for v, d in nbrs.items()
|
| 1323 |
+
if v in self._pred[u]
|
| 1324 |
+
)
|
| 1325 |
+
else:
|
| 1326 |
+
G.add_edges_from(
|
| 1327 |
+
(u, v, deepcopy(d))
|
| 1328 |
+
for u, nbrs in self._adj.items()
|
| 1329 |
+
for v, d in nbrs.items()
|
| 1330 |
+
)
|
| 1331 |
+
return G
|
| 1332 |
+
|
| 1333 |
+
def reverse(self, copy=True):
|
| 1334 |
+
"""Returns the reverse of the graph.
|
| 1335 |
+
|
| 1336 |
+
The reverse is a graph with the same nodes and edges
|
| 1337 |
+
but with the directions of the edges reversed.
|
| 1338 |
+
|
| 1339 |
+
Parameters
|
| 1340 |
+
----------
|
| 1341 |
+
copy : bool optional (default=True)
|
| 1342 |
+
If True, return a new DiGraph holding the reversed edges.
|
| 1343 |
+
If False, the reverse graph is created using a view of
|
| 1344 |
+
the original graph.
|
| 1345 |
+
"""
|
| 1346 |
+
if copy:
|
| 1347 |
+
H = self.__class__()
|
| 1348 |
+
H.graph.update(deepcopy(self.graph))
|
| 1349 |
+
H.add_nodes_from((n, deepcopy(d)) for n, d in self.nodes.items())
|
| 1350 |
+
H.add_edges_from((v, u, deepcopy(d)) for u, v, d in self.edges(data=True))
|
| 1351 |
+
return H
|
| 1352 |
+
return nx.reverse_view(self)
|
minigpt2/lib/python3.10/site-packages/networkx/classes/multigraph.py
ADDED
|
@@ -0,0 +1,1283 @@
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|
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|
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|
| 1 |
+
"""Base class for MultiGraph."""
|
| 2 |
+
|
| 3 |
+
from copy import deepcopy
|
| 4 |
+
from functools import cached_property
|
| 5 |
+
|
| 6 |
+
import networkx as nx
|
| 7 |
+
from networkx import NetworkXError, convert
|
| 8 |
+
from networkx.classes.coreviews import MultiAdjacencyView
|
| 9 |
+
from networkx.classes.graph import Graph
|
| 10 |
+
from networkx.classes.reportviews import MultiDegreeView, MultiEdgeView
|
| 11 |
+
|
| 12 |
+
__all__ = ["MultiGraph"]
|
| 13 |
+
|
| 14 |
+
|
| 15 |
+
class MultiGraph(Graph):
|
| 16 |
+
"""
|
| 17 |
+
An undirected graph class that can store multiedges.
|
| 18 |
+
|
| 19 |
+
Multiedges are multiple edges between two nodes. Each edge
|
| 20 |
+
can hold optional data or attributes.
|
| 21 |
+
|
| 22 |
+
A MultiGraph holds undirected edges. Self loops are allowed.
|
| 23 |
+
|
| 24 |
+
Nodes can be arbitrary (hashable) Python objects with optional
|
| 25 |
+
key/value attributes. By convention `None` is not used as a node.
|
| 26 |
+
|
| 27 |
+
Edges are represented as links between nodes with optional
|
| 28 |
+
key/value attributes, in a MultiGraph each edge has a key to
|
| 29 |
+
distinguish between multiple edges that have the same source and
|
| 30 |
+
destination nodes.
|
| 31 |
+
|
| 32 |
+
Parameters
|
| 33 |
+
----------
|
| 34 |
+
incoming_graph_data : input graph (optional, default: None)
|
| 35 |
+
Data to initialize graph. If None (default) an empty
|
| 36 |
+
graph is created. The data can be any format that is supported
|
| 37 |
+
by the to_networkx_graph() function, currently including edge list,
|
| 38 |
+
dict of dicts, dict of lists, NetworkX graph, 2D NumPy array,
|
| 39 |
+
SciPy sparse array, or PyGraphviz graph.
|
| 40 |
+
|
| 41 |
+
multigraph_input : bool or None (default None)
|
| 42 |
+
Note: Only used when `incoming_graph_data` is a dict.
|
| 43 |
+
If True, `incoming_graph_data` is assumed to be a
|
| 44 |
+
dict-of-dict-of-dict-of-dict structure keyed by
|
| 45 |
+
node to neighbor to edge keys to edge data for multi-edges.
|
| 46 |
+
A NetworkXError is raised if this is not the case.
|
| 47 |
+
If False, :func:`to_networkx_graph` is used to try to determine
|
| 48 |
+
the dict's graph data structure as either a dict-of-dict-of-dict
|
| 49 |
+
keyed by node to neighbor to edge data, or a dict-of-iterable
|
| 50 |
+
keyed by node to neighbors.
|
| 51 |
+
If None, the treatment for True is tried, but if it fails,
|
| 52 |
+
the treatment for False is tried.
|
| 53 |
+
|
| 54 |
+
attr : keyword arguments, optional (default= no attributes)
|
| 55 |
+
Attributes to add to graph as key=value pairs.
|
| 56 |
+
|
| 57 |
+
See Also
|
| 58 |
+
--------
|
| 59 |
+
Graph
|
| 60 |
+
DiGraph
|
| 61 |
+
MultiDiGraph
|
| 62 |
+
|
| 63 |
+
Examples
|
| 64 |
+
--------
|
| 65 |
+
Create an empty graph structure (a "null graph") with no nodes and
|
| 66 |
+
no edges.
|
| 67 |
+
|
| 68 |
+
>>> G = nx.MultiGraph()
|
| 69 |
+
|
| 70 |
+
G can be grown in several ways.
|
| 71 |
+
|
| 72 |
+
**Nodes:**
|
| 73 |
+
|
| 74 |
+
Add one node at a time:
|
| 75 |
+
|
| 76 |
+
>>> G.add_node(1)
|
| 77 |
+
|
| 78 |
+
Add the nodes from any container (a list, dict, set or
|
| 79 |
+
even the lines from a file or the nodes from another graph).
|
| 80 |
+
|
| 81 |
+
>>> G.add_nodes_from([2, 3])
|
| 82 |
+
>>> G.add_nodes_from(range(100, 110))
|
| 83 |
+
>>> H = nx.path_graph(10)
|
| 84 |
+
>>> G.add_nodes_from(H)
|
| 85 |
+
|
| 86 |
+
In addition to strings and integers any hashable Python object
|
| 87 |
+
(except None) can represent a node, e.g. a customized node object,
|
| 88 |
+
or even another Graph.
|
| 89 |
+
|
| 90 |
+
>>> G.add_node(H)
|
| 91 |
+
|
| 92 |
+
**Edges:**
|
| 93 |
+
|
| 94 |
+
G can also be grown by adding edges.
|
| 95 |
+
|
| 96 |
+
Add one edge,
|
| 97 |
+
|
| 98 |
+
>>> key = G.add_edge(1, 2)
|
| 99 |
+
|
| 100 |
+
a list of edges,
|
| 101 |
+
|
| 102 |
+
>>> keys = G.add_edges_from([(1, 2), (1, 3)])
|
| 103 |
+
|
| 104 |
+
or a collection of edges,
|
| 105 |
+
|
| 106 |
+
>>> keys = G.add_edges_from(H.edges)
|
| 107 |
+
|
| 108 |
+
If some edges connect nodes not yet in the graph, the nodes
|
| 109 |
+
are added automatically. If an edge already exists, an additional
|
| 110 |
+
edge is created and stored using a key to identify the edge.
|
| 111 |
+
By default the key is the lowest unused integer.
|
| 112 |
+
|
| 113 |
+
>>> keys = G.add_edges_from([(4, 5, {"route": 28}), (4, 5, {"route": 37})])
|
| 114 |
+
>>> G[4]
|
| 115 |
+
AdjacencyView({3: {0: {}}, 5: {0: {}, 1: {'route': 28}, 2: {'route': 37}}})
|
| 116 |
+
|
| 117 |
+
**Attributes:**
|
| 118 |
+
|
| 119 |
+
Each graph, node, and edge can hold key/value attribute pairs
|
| 120 |
+
in an associated attribute dictionary (the keys must be hashable).
|
| 121 |
+
By default these are empty, but can be added or changed using
|
| 122 |
+
add_edge, add_node or direct manipulation of the attribute
|
| 123 |
+
dictionaries named graph, node and edge respectively.
|
| 124 |
+
|
| 125 |
+
>>> G = nx.MultiGraph(day="Friday")
|
| 126 |
+
>>> G.graph
|
| 127 |
+
{'day': 'Friday'}
|
| 128 |
+
|
| 129 |
+
Add node attributes using add_node(), add_nodes_from() or G.nodes
|
| 130 |
+
|
| 131 |
+
>>> G.add_node(1, time="5pm")
|
| 132 |
+
>>> G.add_nodes_from([3], time="2pm")
|
| 133 |
+
>>> G.nodes[1]
|
| 134 |
+
{'time': '5pm'}
|
| 135 |
+
>>> G.nodes[1]["room"] = 714
|
| 136 |
+
>>> del G.nodes[1]["room"] # remove attribute
|
| 137 |
+
>>> list(G.nodes(data=True))
|
| 138 |
+
[(1, {'time': '5pm'}), (3, {'time': '2pm'})]
|
| 139 |
+
|
| 140 |
+
Add edge attributes using add_edge(), add_edges_from(), subscript
|
| 141 |
+
notation, or G.edges.
|
| 142 |
+
|
| 143 |
+
>>> key = G.add_edge(1, 2, weight=4.7)
|
| 144 |
+
>>> keys = G.add_edges_from([(3, 4), (4, 5)], color="red")
|
| 145 |
+
>>> keys = G.add_edges_from([(1, 2, {"color": "blue"}), (2, 3, {"weight": 8})])
|
| 146 |
+
>>> G[1][2][0]["weight"] = 4.7
|
| 147 |
+
>>> G.edges[1, 2, 0]["weight"] = 4
|
| 148 |
+
|
| 149 |
+
Warning: we protect the graph data structure by making `G.edges[1,
|
| 150 |
+
2, 0]` a read-only dict-like structure. However, you can assign to
|
| 151 |
+
attributes in e.g. `G.edges[1, 2, 0]`. Thus, use 2 sets of brackets
|
| 152 |
+
to add/change data attributes: `G.edges[1, 2, 0]['weight'] = 4`.
|
| 153 |
+
|
| 154 |
+
**Shortcuts:**
|
| 155 |
+
|
| 156 |
+
Many common graph features allow python syntax to speed reporting.
|
| 157 |
+
|
| 158 |
+
>>> 1 in G # check if node in graph
|
| 159 |
+
True
|
| 160 |
+
>>> [n for n in G if n < 3] # iterate through nodes
|
| 161 |
+
[1, 2]
|
| 162 |
+
>>> len(G) # number of nodes in graph
|
| 163 |
+
5
|
| 164 |
+
>>> G[1] # adjacency dict-like view mapping neighbor -> edge key -> edge attributes
|
| 165 |
+
AdjacencyView({2: {0: {'weight': 4}, 1: {'color': 'blue'}}})
|
| 166 |
+
|
| 167 |
+
Often the best way to traverse all edges of a graph is via the neighbors.
|
| 168 |
+
The neighbors are reported as an adjacency-dict `G.adj` or `G.adjacency()`.
|
| 169 |
+
|
| 170 |
+
>>> for n, nbrsdict in G.adjacency():
|
| 171 |
+
... for nbr, keydict in nbrsdict.items():
|
| 172 |
+
... for key, eattr in keydict.items():
|
| 173 |
+
... if "weight" in eattr:
|
| 174 |
+
... # Do something useful with the edges
|
| 175 |
+
... pass
|
| 176 |
+
|
| 177 |
+
But the edges() method is often more convenient:
|
| 178 |
+
|
| 179 |
+
>>> for u, v, keys, weight in G.edges(data="weight", keys=True):
|
| 180 |
+
... if weight is not None:
|
| 181 |
+
... # Do something useful with the edges
|
| 182 |
+
... pass
|
| 183 |
+
|
| 184 |
+
**Reporting:**
|
| 185 |
+
|
| 186 |
+
Simple graph information is obtained using methods and object-attributes.
|
| 187 |
+
Reporting usually provides views instead of containers to reduce memory
|
| 188 |
+
usage. The views update as the graph is updated similarly to dict-views.
|
| 189 |
+
The objects `nodes`, `edges` and `adj` provide access to data attributes
|
| 190 |
+
via lookup (e.g. `nodes[n]`, `edges[u, v, k]`, `adj[u][v]`) and iteration
|
| 191 |
+
(e.g. `nodes.items()`, `nodes.data('color')`,
|
| 192 |
+
`nodes.data('color', default='blue')` and similarly for `edges`)
|
| 193 |
+
Views exist for `nodes`, `edges`, `neighbors()`/`adj` and `degree`.
|
| 194 |
+
|
| 195 |
+
For details on these and other miscellaneous methods, see below.
|
| 196 |
+
|
| 197 |
+
**Subclasses (Advanced):**
|
| 198 |
+
|
| 199 |
+
The MultiGraph class uses a dict-of-dict-of-dict-of-dict data structure.
|
| 200 |
+
The outer dict (node_dict) holds adjacency information keyed by node.
|
| 201 |
+
The next dict (adjlist_dict) represents the adjacency information
|
| 202 |
+
and holds edge_key dicts keyed by neighbor. The edge_key dict holds
|
| 203 |
+
each edge_attr dict keyed by edge key. The inner dict
|
| 204 |
+
(edge_attr_dict) represents the edge data and holds edge attribute
|
| 205 |
+
values keyed by attribute names.
|
| 206 |
+
|
| 207 |
+
Each of these four dicts in the dict-of-dict-of-dict-of-dict
|
| 208 |
+
structure can be replaced by a user defined dict-like object.
|
| 209 |
+
In general, the dict-like features should be maintained but
|
| 210 |
+
extra features can be added. To replace one of the dicts create
|
| 211 |
+
a new graph class by changing the class(!) variable holding the
|
| 212 |
+
factory for that dict-like structure. The variable names are
|
| 213 |
+
node_dict_factory, node_attr_dict_factory, adjlist_inner_dict_factory,
|
| 214 |
+
adjlist_outer_dict_factory, edge_key_dict_factory, edge_attr_dict_factory
|
| 215 |
+
and graph_attr_dict_factory.
|
| 216 |
+
|
| 217 |
+
node_dict_factory : function, (default: dict)
|
| 218 |
+
Factory function to be used to create the dict containing node
|
| 219 |
+
attributes, keyed by node id.
|
| 220 |
+
It should require no arguments and return a dict-like object
|
| 221 |
+
|
| 222 |
+
node_attr_dict_factory: function, (default: dict)
|
| 223 |
+
Factory function to be used to create the node attribute
|
| 224 |
+
dict which holds attribute values keyed by attribute name.
|
| 225 |
+
It should require no arguments and return a dict-like object
|
| 226 |
+
|
| 227 |
+
adjlist_outer_dict_factory : function, (default: dict)
|
| 228 |
+
Factory function to be used to create the outer-most dict
|
| 229 |
+
in the data structure that holds adjacency info keyed by node.
|
| 230 |
+
It should require no arguments and return a dict-like object.
|
| 231 |
+
|
| 232 |
+
adjlist_inner_dict_factory : function, (default: dict)
|
| 233 |
+
Factory function to be used to create the adjacency list
|
| 234 |
+
dict which holds multiedge key dicts keyed by neighbor.
|
| 235 |
+
It should require no arguments and return a dict-like object.
|
| 236 |
+
|
| 237 |
+
edge_key_dict_factory : function, (default: dict)
|
| 238 |
+
Factory function to be used to create the edge key dict
|
| 239 |
+
which holds edge data keyed by edge key.
|
| 240 |
+
It should require no arguments and return a dict-like object.
|
| 241 |
+
|
| 242 |
+
edge_attr_dict_factory : function, (default: dict)
|
| 243 |
+
Factory function to be used to create the edge attribute
|
| 244 |
+
dict which holds attribute values keyed by attribute name.
|
| 245 |
+
It should require no arguments and return a dict-like object.
|
| 246 |
+
|
| 247 |
+
graph_attr_dict_factory : function, (default: dict)
|
| 248 |
+
Factory function to be used to create the graph attribute
|
| 249 |
+
dict which holds attribute values keyed by attribute name.
|
| 250 |
+
It should require no arguments and return a dict-like object.
|
| 251 |
+
|
| 252 |
+
Typically, if your extension doesn't impact the data structure all
|
| 253 |
+
methods will inherited without issue except: `to_directed/to_undirected`.
|
| 254 |
+
By default these methods create a DiGraph/Graph class and you probably
|
| 255 |
+
want them to create your extension of a DiGraph/Graph. To facilitate
|
| 256 |
+
this we define two class variables that you can set in your subclass.
|
| 257 |
+
|
| 258 |
+
to_directed_class : callable, (default: DiGraph or MultiDiGraph)
|
| 259 |
+
Class to create a new graph structure in the `to_directed` method.
|
| 260 |
+
If `None`, a NetworkX class (DiGraph or MultiDiGraph) is used.
|
| 261 |
+
|
| 262 |
+
to_undirected_class : callable, (default: Graph or MultiGraph)
|
| 263 |
+
Class to create a new graph structure in the `to_undirected` method.
|
| 264 |
+
If `None`, a NetworkX class (Graph or MultiGraph) is used.
|
| 265 |
+
|
| 266 |
+
**Subclassing Example**
|
| 267 |
+
|
| 268 |
+
Create a low memory graph class that effectively disallows edge
|
| 269 |
+
attributes by using a single attribute dict for all edges.
|
| 270 |
+
This reduces the memory used, but you lose edge attributes.
|
| 271 |
+
|
| 272 |
+
>>> class ThinGraph(nx.Graph):
|
| 273 |
+
... all_edge_dict = {"weight": 1}
|
| 274 |
+
...
|
| 275 |
+
... def single_edge_dict(self):
|
| 276 |
+
... return self.all_edge_dict
|
| 277 |
+
...
|
| 278 |
+
... edge_attr_dict_factory = single_edge_dict
|
| 279 |
+
>>> G = ThinGraph()
|
| 280 |
+
>>> G.add_edge(2, 1)
|
| 281 |
+
>>> G[2][1]
|
| 282 |
+
{'weight': 1}
|
| 283 |
+
>>> G.add_edge(2, 2)
|
| 284 |
+
>>> G[2][1] is G[2][2]
|
| 285 |
+
True
|
| 286 |
+
"""
|
| 287 |
+
|
| 288 |
+
# node_dict_factory = dict # already assigned in Graph
|
| 289 |
+
# adjlist_outer_dict_factory = dict
|
| 290 |
+
# adjlist_inner_dict_factory = dict
|
| 291 |
+
edge_key_dict_factory = dict
|
| 292 |
+
# edge_attr_dict_factory = dict
|
| 293 |
+
|
| 294 |
+
def to_directed_class(self):
|
| 295 |
+
"""Returns the class to use for empty directed copies.
|
| 296 |
+
|
| 297 |
+
If you subclass the base classes, use this to designate
|
| 298 |
+
what directed class to use for `to_directed()` copies.
|
| 299 |
+
"""
|
| 300 |
+
return nx.MultiDiGraph
|
| 301 |
+
|
| 302 |
+
def to_undirected_class(self):
|
| 303 |
+
"""Returns the class to use for empty undirected copies.
|
| 304 |
+
|
| 305 |
+
If you subclass the base classes, use this to designate
|
| 306 |
+
what directed class to use for `to_directed()` copies.
|
| 307 |
+
"""
|
| 308 |
+
return MultiGraph
|
| 309 |
+
|
| 310 |
+
def __init__(self, incoming_graph_data=None, multigraph_input=None, **attr):
|
| 311 |
+
"""Initialize a graph with edges, name, or graph attributes.
|
| 312 |
+
|
| 313 |
+
Parameters
|
| 314 |
+
----------
|
| 315 |
+
incoming_graph_data : input graph
|
| 316 |
+
Data to initialize graph. If incoming_graph_data=None (default)
|
| 317 |
+
an empty graph is created. The data can be an edge list, or any
|
| 318 |
+
NetworkX graph object. If the corresponding optional Python
|
| 319 |
+
packages are installed the data can also be a 2D NumPy array, a
|
| 320 |
+
SciPy sparse array, or a PyGraphviz graph.
|
| 321 |
+
|
| 322 |
+
multigraph_input : bool or None (default None)
|
| 323 |
+
Note: Only used when `incoming_graph_data` is a dict.
|
| 324 |
+
If True, `incoming_graph_data` is assumed to be a
|
| 325 |
+
dict-of-dict-of-dict-of-dict structure keyed by
|
| 326 |
+
node to neighbor to edge keys to edge data for multi-edges.
|
| 327 |
+
A NetworkXError is raised if this is not the case.
|
| 328 |
+
If False, :func:`to_networkx_graph` is used to try to determine
|
| 329 |
+
the dict's graph data structure as either a dict-of-dict-of-dict
|
| 330 |
+
keyed by node to neighbor to edge data, or a dict-of-iterable
|
| 331 |
+
keyed by node to neighbors.
|
| 332 |
+
If None, the treatment for True is tried, but if it fails,
|
| 333 |
+
the treatment for False is tried.
|
| 334 |
+
|
| 335 |
+
attr : keyword arguments, optional (default= no attributes)
|
| 336 |
+
Attributes to add to graph as key=value pairs.
|
| 337 |
+
|
| 338 |
+
See Also
|
| 339 |
+
--------
|
| 340 |
+
convert
|
| 341 |
+
|
| 342 |
+
Examples
|
| 343 |
+
--------
|
| 344 |
+
>>> G = nx.MultiGraph()
|
| 345 |
+
>>> G = nx.MultiGraph(name="my graph")
|
| 346 |
+
>>> e = [(1, 2), (1, 2), (2, 3), (3, 4)] # list of edges
|
| 347 |
+
>>> G = nx.MultiGraph(e)
|
| 348 |
+
|
| 349 |
+
Arbitrary graph attribute pairs (key=value) may be assigned
|
| 350 |
+
|
| 351 |
+
>>> G = nx.MultiGraph(e, day="Friday")
|
| 352 |
+
>>> G.graph
|
| 353 |
+
{'day': 'Friday'}
|
| 354 |
+
|
| 355 |
+
"""
|
| 356 |
+
# multigraph_input can be None/True/False. So check "is not False"
|
| 357 |
+
if isinstance(incoming_graph_data, dict) and multigraph_input is not False:
|
| 358 |
+
Graph.__init__(self)
|
| 359 |
+
try:
|
| 360 |
+
convert.from_dict_of_dicts(
|
| 361 |
+
incoming_graph_data, create_using=self, multigraph_input=True
|
| 362 |
+
)
|
| 363 |
+
self.graph.update(attr)
|
| 364 |
+
except Exception as err:
|
| 365 |
+
if multigraph_input is True:
|
| 366 |
+
raise nx.NetworkXError(
|
| 367 |
+
f"converting multigraph_input raised:\n{type(err)}: {err}"
|
| 368 |
+
)
|
| 369 |
+
Graph.__init__(self, incoming_graph_data, **attr)
|
| 370 |
+
else:
|
| 371 |
+
Graph.__init__(self, incoming_graph_data, **attr)
|
| 372 |
+
|
| 373 |
+
@cached_property
|
| 374 |
+
def adj(self):
|
| 375 |
+
"""Graph adjacency object holding the neighbors of each node.
|
| 376 |
+
|
| 377 |
+
This object is a read-only dict-like structure with node keys
|
| 378 |
+
and neighbor-dict values. The neighbor-dict is keyed by neighbor
|
| 379 |
+
to the edgekey-data-dict. So `G.adj[3][2][0]['color'] = 'blue'` sets
|
| 380 |
+
the color of the edge `(3, 2, 0)` to `"blue"`.
|
| 381 |
+
|
| 382 |
+
Iterating over G.adj behaves like a dict. Useful idioms include
|
| 383 |
+
`for nbr, edgesdict in G.adj[n].items():`.
|
| 384 |
+
|
| 385 |
+
The neighbor information is also provided by subscripting the graph.
|
| 386 |
+
|
| 387 |
+
Examples
|
| 388 |
+
--------
|
| 389 |
+
>>> e = [(1, 2), (1, 2), (1, 3), (3, 4)] # list of edges
|
| 390 |
+
>>> G = nx.MultiGraph(e)
|
| 391 |
+
>>> G.edges[1, 2, 0]["weight"] = 3
|
| 392 |
+
>>> result = set()
|
| 393 |
+
>>> for edgekey, data in G[1][2].items():
|
| 394 |
+
... result.add(data.get("weight", 1))
|
| 395 |
+
>>> result
|
| 396 |
+
{1, 3}
|
| 397 |
+
|
| 398 |
+
For directed graphs, `G.adj` holds outgoing (successor) info.
|
| 399 |
+
"""
|
| 400 |
+
return MultiAdjacencyView(self._adj)
|
| 401 |
+
|
| 402 |
+
def new_edge_key(self, u, v):
|
| 403 |
+
"""Returns an unused key for edges between nodes `u` and `v`.
|
| 404 |
+
|
| 405 |
+
The nodes `u` and `v` do not need to be already in the graph.
|
| 406 |
+
|
| 407 |
+
Notes
|
| 408 |
+
-----
|
| 409 |
+
In the standard MultiGraph class the new key is the number of existing
|
| 410 |
+
edges between `u` and `v` (increased if necessary to ensure unused).
|
| 411 |
+
The first edge will have key 0, then 1, etc. If an edge is removed
|
| 412 |
+
further new_edge_keys may not be in this order.
|
| 413 |
+
|
| 414 |
+
Parameters
|
| 415 |
+
----------
|
| 416 |
+
u, v : nodes
|
| 417 |
+
|
| 418 |
+
Returns
|
| 419 |
+
-------
|
| 420 |
+
key : int
|
| 421 |
+
"""
|
| 422 |
+
try:
|
| 423 |
+
keydict = self._adj[u][v]
|
| 424 |
+
except KeyError:
|
| 425 |
+
return 0
|
| 426 |
+
key = len(keydict)
|
| 427 |
+
while key in keydict:
|
| 428 |
+
key += 1
|
| 429 |
+
return key
|
| 430 |
+
|
| 431 |
+
def add_edge(self, u_for_edge, v_for_edge, key=None, **attr):
|
| 432 |
+
"""Add an edge between u and v.
|
| 433 |
+
|
| 434 |
+
The nodes u and v will be automatically added if they are
|
| 435 |
+
not already in the graph.
|
| 436 |
+
|
| 437 |
+
Edge attributes can be specified with keywords or by directly
|
| 438 |
+
accessing the edge's attribute dictionary. See examples below.
|
| 439 |
+
|
| 440 |
+
Parameters
|
| 441 |
+
----------
|
| 442 |
+
u_for_edge, v_for_edge : nodes
|
| 443 |
+
Nodes can be, for example, strings or numbers.
|
| 444 |
+
Nodes must be hashable (and not None) Python objects.
|
| 445 |
+
key : hashable identifier, optional (default=lowest unused integer)
|
| 446 |
+
Used to distinguish multiedges between a pair of nodes.
|
| 447 |
+
attr : keyword arguments, optional
|
| 448 |
+
Edge data (or labels or objects) can be assigned using
|
| 449 |
+
keyword arguments.
|
| 450 |
+
|
| 451 |
+
Returns
|
| 452 |
+
-------
|
| 453 |
+
The edge key assigned to the edge.
|
| 454 |
+
|
| 455 |
+
See Also
|
| 456 |
+
--------
|
| 457 |
+
add_edges_from : add a collection of edges
|
| 458 |
+
|
| 459 |
+
Notes
|
| 460 |
+
-----
|
| 461 |
+
To replace/update edge data, use the optional key argument
|
| 462 |
+
to identify a unique edge. Otherwise a new edge will be created.
|
| 463 |
+
|
| 464 |
+
NetworkX algorithms designed for weighted graphs cannot use
|
| 465 |
+
multigraphs directly because it is not clear how to handle
|
| 466 |
+
multiedge weights. Convert to Graph using edge attribute
|
| 467 |
+
'weight' to enable weighted graph algorithms.
|
| 468 |
+
|
| 469 |
+
Default keys are generated using the method `new_edge_key()`.
|
| 470 |
+
This method can be overridden by subclassing the base class and
|
| 471 |
+
providing a custom `new_edge_key()` method.
|
| 472 |
+
|
| 473 |
+
Examples
|
| 474 |
+
--------
|
| 475 |
+
The following each add an additional edge e=(1, 2) to graph G:
|
| 476 |
+
|
| 477 |
+
>>> G = nx.MultiGraph()
|
| 478 |
+
>>> e = (1, 2)
|
| 479 |
+
>>> ekey = G.add_edge(1, 2) # explicit two-node form
|
| 480 |
+
>>> G.add_edge(*e) # single edge as tuple of two nodes
|
| 481 |
+
1
|
| 482 |
+
>>> G.add_edges_from([(1, 2)]) # add edges from iterable container
|
| 483 |
+
[2]
|
| 484 |
+
|
| 485 |
+
Associate data to edges using keywords:
|
| 486 |
+
|
| 487 |
+
>>> ekey = G.add_edge(1, 2, weight=3)
|
| 488 |
+
>>> ekey = G.add_edge(1, 2, key=0, weight=4) # update data for key=0
|
| 489 |
+
>>> ekey = G.add_edge(1, 3, weight=7, capacity=15, length=342.7)
|
| 490 |
+
|
| 491 |
+
For non-string attribute keys, use subscript notation.
|
| 492 |
+
|
| 493 |
+
>>> ekey = G.add_edge(1, 2)
|
| 494 |
+
>>> G[1][2][0].update({0: 5})
|
| 495 |
+
>>> G.edges[1, 2, 0].update({0: 5})
|
| 496 |
+
"""
|
| 497 |
+
u, v = u_for_edge, v_for_edge
|
| 498 |
+
# add nodes
|
| 499 |
+
if u not in self._adj:
|
| 500 |
+
if u is None:
|
| 501 |
+
raise ValueError("None cannot be a node")
|
| 502 |
+
self._adj[u] = self.adjlist_inner_dict_factory()
|
| 503 |
+
self._node[u] = self.node_attr_dict_factory()
|
| 504 |
+
if v not in self._adj:
|
| 505 |
+
if v is None:
|
| 506 |
+
raise ValueError("None cannot be a node")
|
| 507 |
+
self._adj[v] = self.adjlist_inner_dict_factory()
|
| 508 |
+
self._node[v] = self.node_attr_dict_factory()
|
| 509 |
+
if key is None:
|
| 510 |
+
key = self.new_edge_key(u, v)
|
| 511 |
+
if v in self._adj[u]:
|
| 512 |
+
keydict = self._adj[u][v]
|
| 513 |
+
datadict = keydict.get(key, self.edge_attr_dict_factory())
|
| 514 |
+
datadict.update(attr)
|
| 515 |
+
keydict[key] = datadict
|
| 516 |
+
else:
|
| 517 |
+
# selfloops work this way without special treatment
|
| 518 |
+
datadict = self.edge_attr_dict_factory()
|
| 519 |
+
datadict.update(attr)
|
| 520 |
+
keydict = self.edge_key_dict_factory()
|
| 521 |
+
keydict[key] = datadict
|
| 522 |
+
self._adj[u][v] = keydict
|
| 523 |
+
self._adj[v][u] = keydict
|
| 524 |
+
nx._clear_cache(self)
|
| 525 |
+
return key
|
| 526 |
+
|
| 527 |
+
def add_edges_from(self, ebunch_to_add, **attr):
|
| 528 |
+
"""Add all the edges in ebunch_to_add.
|
| 529 |
+
|
| 530 |
+
Parameters
|
| 531 |
+
----------
|
| 532 |
+
ebunch_to_add : container of edges
|
| 533 |
+
Each edge given in the container will be added to the
|
| 534 |
+
graph. The edges can be:
|
| 535 |
+
|
| 536 |
+
- 2-tuples (u, v) or
|
| 537 |
+
- 3-tuples (u, v, d) for an edge data dict d, or
|
| 538 |
+
- 3-tuples (u, v, k) for not iterable key k, or
|
| 539 |
+
- 4-tuples (u, v, k, d) for an edge with data and key k
|
| 540 |
+
|
| 541 |
+
attr : keyword arguments, optional
|
| 542 |
+
Edge data (or labels or objects) can be assigned using
|
| 543 |
+
keyword arguments.
|
| 544 |
+
|
| 545 |
+
Returns
|
| 546 |
+
-------
|
| 547 |
+
A list of edge keys assigned to the edges in `ebunch`.
|
| 548 |
+
|
| 549 |
+
See Also
|
| 550 |
+
--------
|
| 551 |
+
add_edge : add a single edge
|
| 552 |
+
add_weighted_edges_from : convenient way to add weighted edges
|
| 553 |
+
|
| 554 |
+
Notes
|
| 555 |
+
-----
|
| 556 |
+
Adding the same edge twice has no effect but any edge data
|
| 557 |
+
will be updated when each duplicate edge is added.
|
| 558 |
+
|
| 559 |
+
Edge attributes specified in an ebunch take precedence over
|
| 560 |
+
attributes specified via keyword arguments.
|
| 561 |
+
|
| 562 |
+
Default keys are generated using the method ``new_edge_key()``.
|
| 563 |
+
This method can be overridden by subclassing the base class and
|
| 564 |
+
providing a custom ``new_edge_key()`` method.
|
| 565 |
+
|
| 566 |
+
When adding edges from an iterator over the graph you are changing,
|
| 567 |
+
a `RuntimeError` can be raised with message:
|
| 568 |
+
`RuntimeError: dictionary changed size during iteration`. This
|
| 569 |
+
happens when the graph's underlying dictionary is modified during
|
| 570 |
+
iteration. To avoid this error, evaluate the iterator into a separate
|
| 571 |
+
object, e.g. by using `list(iterator_of_edges)`, and pass this
|
| 572 |
+
object to `G.add_edges_from`.
|
| 573 |
+
|
| 574 |
+
Examples
|
| 575 |
+
--------
|
| 576 |
+
>>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc
|
| 577 |
+
>>> G.add_edges_from([(0, 1), (1, 2)]) # using a list of edge tuples
|
| 578 |
+
>>> e = zip(range(0, 3), range(1, 4))
|
| 579 |
+
>>> G.add_edges_from(e) # Add the path graph 0-1-2-3
|
| 580 |
+
|
| 581 |
+
Associate data to edges
|
| 582 |
+
|
| 583 |
+
>>> G.add_edges_from([(1, 2), (2, 3)], weight=3)
|
| 584 |
+
>>> G.add_edges_from([(3, 4), (1, 4)], label="WN2898")
|
| 585 |
+
|
| 586 |
+
Evaluate an iterator over a graph if using it to modify the same graph
|
| 587 |
+
|
| 588 |
+
>>> G = nx.MultiGraph([(1, 2), (2, 3), (3, 4)])
|
| 589 |
+
>>> # Grow graph by one new node, adding edges to all existing nodes.
|
| 590 |
+
>>> # wrong way - will raise RuntimeError
|
| 591 |
+
>>> # G.add_edges_from(((5, n) for n in G.nodes))
|
| 592 |
+
>>> # right way - note that there will be no self-edge for node 5
|
| 593 |
+
>>> assigned_keys = G.add_edges_from(list((5, n) for n in G.nodes))
|
| 594 |
+
"""
|
| 595 |
+
keylist = []
|
| 596 |
+
for e in ebunch_to_add:
|
| 597 |
+
ne = len(e)
|
| 598 |
+
if ne == 4:
|
| 599 |
+
u, v, key, dd = e
|
| 600 |
+
elif ne == 3:
|
| 601 |
+
u, v, dd = e
|
| 602 |
+
key = None
|
| 603 |
+
elif ne == 2:
|
| 604 |
+
u, v = e
|
| 605 |
+
dd = {}
|
| 606 |
+
key = None
|
| 607 |
+
else:
|
| 608 |
+
msg = f"Edge tuple {e} must be a 2-tuple, 3-tuple or 4-tuple."
|
| 609 |
+
raise NetworkXError(msg)
|
| 610 |
+
ddd = {}
|
| 611 |
+
ddd.update(attr)
|
| 612 |
+
try:
|
| 613 |
+
ddd.update(dd)
|
| 614 |
+
except (TypeError, ValueError):
|
| 615 |
+
if ne != 3:
|
| 616 |
+
raise
|
| 617 |
+
key = dd # ne == 3 with 3rd value not dict, must be a key
|
| 618 |
+
key = self.add_edge(u, v, key)
|
| 619 |
+
self[u][v][key].update(ddd)
|
| 620 |
+
keylist.append(key)
|
| 621 |
+
nx._clear_cache(self)
|
| 622 |
+
return keylist
|
| 623 |
+
|
| 624 |
+
def remove_edge(self, u, v, key=None):
|
| 625 |
+
"""Remove an edge between u and v.
|
| 626 |
+
|
| 627 |
+
Parameters
|
| 628 |
+
----------
|
| 629 |
+
u, v : nodes
|
| 630 |
+
Remove an edge between nodes u and v.
|
| 631 |
+
key : hashable identifier, optional (default=None)
|
| 632 |
+
Used to distinguish multiple edges between a pair of nodes.
|
| 633 |
+
If None, remove a single edge between u and v. If there are
|
| 634 |
+
multiple edges, removes the last edge added in terms of
|
| 635 |
+
insertion order.
|
| 636 |
+
|
| 637 |
+
Raises
|
| 638 |
+
------
|
| 639 |
+
NetworkXError
|
| 640 |
+
If there is not an edge between u and v, or
|
| 641 |
+
if there is no edge with the specified key.
|
| 642 |
+
|
| 643 |
+
See Also
|
| 644 |
+
--------
|
| 645 |
+
remove_edges_from : remove a collection of edges
|
| 646 |
+
|
| 647 |
+
Examples
|
| 648 |
+
--------
|
| 649 |
+
>>> G = nx.MultiGraph()
|
| 650 |
+
>>> nx.add_path(G, [0, 1, 2, 3])
|
| 651 |
+
>>> G.remove_edge(0, 1)
|
| 652 |
+
>>> e = (1, 2)
|
| 653 |
+
>>> G.remove_edge(*e) # unpacks e from an edge tuple
|
| 654 |
+
|
| 655 |
+
For multiple edges
|
| 656 |
+
|
| 657 |
+
>>> G = nx.MultiGraph() # or MultiDiGraph, etc
|
| 658 |
+
>>> G.add_edges_from([(1, 2), (1, 2), (1, 2)]) # key_list returned
|
| 659 |
+
[0, 1, 2]
|
| 660 |
+
|
| 661 |
+
When ``key=None`` (the default), edges are removed in the opposite
|
| 662 |
+
order that they were added:
|
| 663 |
+
|
| 664 |
+
>>> G.remove_edge(1, 2)
|
| 665 |
+
>>> G.edges(keys=True)
|
| 666 |
+
MultiEdgeView([(1, 2, 0), (1, 2, 1)])
|
| 667 |
+
>>> G.remove_edge(2, 1) # edges are not directed
|
| 668 |
+
>>> G.edges(keys=True)
|
| 669 |
+
MultiEdgeView([(1, 2, 0)])
|
| 670 |
+
|
| 671 |
+
For edges with keys
|
| 672 |
+
|
| 673 |
+
>>> G = nx.MultiGraph()
|
| 674 |
+
>>> G.add_edge(1, 2, key="first")
|
| 675 |
+
'first'
|
| 676 |
+
>>> G.add_edge(1, 2, key="second")
|
| 677 |
+
'second'
|
| 678 |
+
>>> G.remove_edge(1, 2, key="first")
|
| 679 |
+
>>> G.edges(keys=True)
|
| 680 |
+
MultiEdgeView([(1, 2, 'second')])
|
| 681 |
+
|
| 682 |
+
"""
|
| 683 |
+
try:
|
| 684 |
+
d = self._adj[u][v]
|
| 685 |
+
except KeyError as err:
|
| 686 |
+
raise NetworkXError(f"The edge {u}-{v} is not in the graph.") from err
|
| 687 |
+
# remove the edge with specified data
|
| 688 |
+
if key is None:
|
| 689 |
+
d.popitem()
|
| 690 |
+
else:
|
| 691 |
+
try:
|
| 692 |
+
del d[key]
|
| 693 |
+
except KeyError as err:
|
| 694 |
+
msg = f"The edge {u}-{v} with key {key} is not in the graph."
|
| 695 |
+
raise NetworkXError(msg) from err
|
| 696 |
+
if len(d) == 0:
|
| 697 |
+
# remove the key entries if last edge
|
| 698 |
+
del self._adj[u][v]
|
| 699 |
+
if u != v: # check for selfloop
|
| 700 |
+
del self._adj[v][u]
|
| 701 |
+
nx._clear_cache(self)
|
| 702 |
+
|
| 703 |
+
def remove_edges_from(self, ebunch):
|
| 704 |
+
"""Remove all edges specified in ebunch.
|
| 705 |
+
|
| 706 |
+
Parameters
|
| 707 |
+
----------
|
| 708 |
+
ebunch: list or container of edge tuples
|
| 709 |
+
Each edge given in the list or container will be removed
|
| 710 |
+
from the graph. The edges can be:
|
| 711 |
+
|
| 712 |
+
- 2-tuples (u, v) A single edge between u and v is removed.
|
| 713 |
+
- 3-tuples (u, v, key) The edge identified by key is removed.
|
| 714 |
+
- 4-tuples (u, v, key, data) where data is ignored.
|
| 715 |
+
|
| 716 |
+
See Also
|
| 717 |
+
--------
|
| 718 |
+
remove_edge : remove a single edge
|
| 719 |
+
|
| 720 |
+
Notes
|
| 721 |
+
-----
|
| 722 |
+
Will fail silently if an edge in ebunch is not in the graph.
|
| 723 |
+
|
| 724 |
+
Examples
|
| 725 |
+
--------
|
| 726 |
+
>>> G = nx.path_graph(4) # or DiGraph, MultiGraph, MultiDiGraph, etc
|
| 727 |
+
>>> ebunch = [(1, 2), (2, 3)]
|
| 728 |
+
>>> G.remove_edges_from(ebunch)
|
| 729 |
+
|
| 730 |
+
Removing multiple copies of edges
|
| 731 |
+
|
| 732 |
+
>>> G = nx.MultiGraph()
|
| 733 |
+
>>> keys = G.add_edges_from([(1, 2), (1, 2), (1, 2)])
|
| 734 |
+
>>> G.remove_edges_from([(1, 2), (2, 1)]) # edges aren't directed
|
| 735 |
+
>>> list(G.edges())
|
| 736 |
+
[(1, 2)]
|
| 737 |
+
>>> G.remove_edges_from([(1, 2), (1, 2)]) # silently ignore extra copy
|
| 738 |
+
>>> list(G.edges) # now empty graph
|
| 739 |
+
[]
|
| 740 |
+
|
| 741 |
+
When the edge is a 2-tuple ``(u, v)`` but there are multiple edges between
|
| 742 |
+
u and v in the graph, the most recent edge (in terms of insertion
|
| 743 |
+
order) is removed.
|
| 744 |
+
|
| 745 |
+
>>> G = nx.MultiGraph()
|
| 746 |
+
>>> for key in ("x", "y", "a"):
|
| 747 |
+
... k = G.add_edge(0, 1, key=key)
|
| 748 |
+
>>> G.edges(keys=True)
|
| 749 |
+
MultiEdgeView([(0, 1, 'x'), (0, 1, 'y'), (0, 1, 'a')])
|
| 750 |
+
>>> G.remove_edges_from([(0, 1)])
|
| 751 |
+
>>> G.edges(keys=True)
|
| 752 |
+
MultiEdgeView([(0, 1, 'x'), (0, 1, 'y')])
|
| 753 |
+
|
| 754 |
+
"""
|
| 755 |
+
for e in ebunch:
|
| 756 |
+
try:
|
| 757 |
+
self.remove_edge(*e[:3])
|
| 758 |
+
except NetworkXError:
|
| 759 |
+
pass
|
| 760 |
+
nx._clear_cache(self)
|
| 761 |
+
|
| 762 |
+
def has_edge(self, u, v, key=None):
|
| 763 |
+
"""Returns True if the graph has an edge between nodes u and v.
|
| 764 |
+
|
| 765 |
+
This is the same as `v in G[u] or key in G[u][v]`
|
| 766 |
+
without KeyError exceptions.
|
| 767 |
+
|
| 768 |
+
Parameters
|
| 769 |
+
----------
|
| 770 |
+
u, v : nodes
|
| 771 |
+
Nodes can be, for example, strings or numbers.
|
| 772 |
+
|
| 773 |
+
key : hashable identifier, optional (default=None)
|
| 774 |
+
If specified return True only if the edge with
|
| 775 |
+
key is found.
|
| 776 |
+
|
| 777 |
+
Returns
|
| 778 |
+
-------
|
| 779 |
+
edge_ind : bool
|
| 780 |
+
True if edge is in the graph, False otherwise.
|
| 781 |
+
|
| 782 |
+
Examples
|
| 783 |
+
--------
|
| 784 |
+
Can be called either using two nodes u, v, an edge tuple (u, v),
|
| 785 |
+
or an edge tuple (u, v, key).
|
| 786 |
+
|
| 787 |
+
>>> G = nx.MultiGraph() # or MultiDiGraph
|
| 788 |
+
>>> nx.add_path(G, [0, 1, 2, 3])
|
| 789 |
+
>>> G.has_edge(0, 1) # using two nodes
|
| 790 |
+
True
|
| 791 |
+
>>> e = (0, 1)
|
| 792 |
+
>>> G.has_edge(*e) # e is a 2-tuple (u, v)
|
| 793 |
+
True
|
| 794 |
+
>>> G.add_edge(0, 1, key="a")
|
| 795 |
+
'a'
|
| 796 |
+
>>> G.has_edge(0, 1, key="a") # specify key
|
| 797 |
+
True
|
| 798 |
+
>>> G.has_edge(1, 0, key="a") # edges aren't directed
|
| 799 |
+
True
|
| 800 |
+
>>> e = (0, 1, "a")
|
| 801 |
+
>>> G.has_edge(*e) # e is a 3-tuple (u, v, 'a')
|
| 802 |
+
True
|
| 803 |
+
|
| 804 |
+
The following syntax are equivalent:
|
| 805 |
+
|
| 806 |
+
>>> G.has_edge(0, 1)
|
| 807 |
+
True
|
| 808 |
+
>>> 1 in G[0] # though this gives :exc:`KeyError` if 0 not in G
|
| 809 |
+
True
|
| 810 |
+
>>> 0 in G[1] # other order; also gives :exc:`KeyError` if 0 not in G
|
| 811 |
+
True
|
| 812 |
+
|
| 813 |
+
"""
|
| 814 |
+
try:
|
| 815 |
+
if key is None:
|
| 816 |
+
return v in self._adj[u]
|
| 817 |
+
else:
|
| 818 |
+
return key in self._adj[u][v]
|
| 819 |
+
except KeyError:
|
| 820 |
+
return False
|
| 821 |
+
|
| 822 |
+
@cached_property
|
| 823 |
+
def edges(self):
|
| 824 |
+
"""Returns an iterator over the edges.
|
| 825 |
+
|
| 826 |
+
edges(self, nbunch=None, data=False, keys=False, default=None)
|
| 827 |
+
|
| 828 |
+
The MultiEdgeView provides set-like operations on the edge-tuples
|
| 829 |
+
as well as edge attribute lookup. When called, it also provides
|
| 830 |
+
an EdgeDataView object which allows control of access to edge
|
| 831 |
+
attributes (but does not provide set-like operations).
|
| 832 |
+
Hence, ``G.edges[u, v, k]['color']`` provides the value of the color
|
| 833 |
+
attribute for the edge from ``u`` to ``v`` with key ``k`` while
|
| 834 |
+
``for (u, v, k, c) in G.edges(data='color', keys=True, default="red"):``
|
| 835 |
+
iterates through all the edges yielding the color attribute with
|
| 836 |
+
default `'red'` if no color attribute exists.
|
| 837 |
+
|
| 838 |
+
Edges are returned as tuples with optional data and keys
|
| 839 |
+
in the order (node, neighbor, key, data). If ``keys=True`` is not
|
| 840 |
+
provided, the tuples will just be (node, neighbor, data), but
|
| 841 |
+
multiple tuples with the same node and neighbor will be generated
|
| 842 |
+
when multiple edges exist between two nodes.
|
| 843 |
+
|
| 844 |
+
Parameters
|
| 845 |
+
----------
|
| 846 |
+
nbunch : single node, container, or all nodes (default= all nodes)
|
| 847 |
+
The view will only report edges from these nodes.
|
| 848 |
+
data : string or bool, optional (default=False)
|
| 849 |
+
The edge attribute returned in 3-tuple (u, v, ddict[data]).
|
| 850 |
+
If True, return edge attribute dict in 3-tuple (u, v, ddict).
|
| 851 |
+
If False, return 2-tuple (u, v).
|
| 852 |
+
keys : bool, optional (default=False)
|
| 853 |
+
If True, return edge keys with each edge, creating (u, v, k)
|
| 854 |
+
tuples or (u, v, k, d) tuples if data is also requested.
|
| 855 |
+
default : value, optional (default=None)
|
| 856 |
+
Value used for edges that don't have the requested attribute.
|
| 857 |
+
Only relevant if data is not True or False.
|
| 858 |
+
|
| 859 |
+
Returns
|
| 860 |
+
-------
|
| 861 |
+
edges : MultiEdgeView
|
| 862 |
+
A view of edge attributes, usually it iterates over (u, v)
|
| 863 |
+
(u, v, k) or (u, v, k, d) tuples of edges, but can also be
|
| 864 |
+
used for attribute lookup as ``edges[u, v, k]['foo']``.
|
| 865 |
+
|
| 866 |
+
Notes
|
| 867 |
+
-----
|
| 868 |
+
Nodes in nbunch that are not in the graph will be (quietly) ignored.
|
| 869 |
+
For directed graphs this returns the out-edges.
|
| 870 |
+
|
| 871 |
+
Examples
|
| 872 |
+
--------
|
| 873 |
+
>>> G = nx.MultiGraph()
|
| 874 |
+
>>> nx.add_path(G, [0, 1, 2])
|
| 875 |
+
>>> key = G.add_edge(2, 3, weight=5)
|
| 876 |
+
>>> key2 = G.add_edge(2, 1, weight=2) # multi-edge
|
| 877 |
+
>>> [e for e in G.edges()]
|
| 878 |
+
[(0, 1), (1, 2), (1, 2), (2, 3)]
|
| 879 |
+
>>> G.edges.data() # default data is {} (empty dict)
|
| 880 |
+
MultiEdgeDataView([(0, 1, {}), (1, 2, {}), (1, 2, {'weight': 2}), (2, 3, {'weight': 5})])
|
| 881 |
+
>>> G.edges.data("weight", default=1)
|
| 882 |
+
MultiEdgeDataView([(0, 1, 1), (1, 2, 1), (1, 2, 2), (2, 3, 5)])
|
| 883 |
+
>>> G.edges(keys=True) # default keys are integers
|
| 884 |
+
MultiEdgeView([(0, 1, 0), (1, 2, 0), (1, 2, 1), (2, 3, 0)])
|
| 885 |
+
>>> G.edges.data(keys=True)
|
| 886 |
+
MultiEdgeDataView([(0, 1, 0, {}), (1, 2, 0, {}), (1, 2, 1, {'weight': 2}), (2, 3, 0, {'weight': 5})])
|
| 887 |
+
>>> G.edges.data("weight", default=1, keys=True)
|
| 888 |
+
MultiEdgeDataView([(0, 1, 0, 1), (1, 2, 0, 1), (1, 2, 1, 2), (2, 3, 0, 5)])
|
| 889 |
+
>>> G.edges([0, 3]) # Note ordering of tuples from listed sources
|
| 890 |
+
MultiEdgeDataView([(0, 1), (3, 2)])
|
| 891 |
+
>>> G.edges([0, 3, 2, 1]) # Note ordering of tuples
|
| 892 |
+
MultiEdgeDataView([(0, 1), (3, 2), (2, 1), (2, 1)])
|
| 893 |
+
>>> G.edges(0)
|
| 894 |
+
MultiEdgeDataView([(0, 1)])
|
| 895 |
+
"""
|
| 896 |
+
return MultiEdgeView(self)
|
| 897 |
+
|
| 898 |
+
def get_edge_data(self, u, v, key=None, default=None):
|
| 899 |
+
"""Returns the attribute dictionary associated with edge (u, v,
|
| 900 |
+
key).
|
| 901 |
+
|
| 902 |
+
If a key is not provided, returns a dictionary mapping edge keys
|
| 903 |
+
to attribute dictionaries for each edge between u and v.
|
| 904 |
+
|
| 905 |
+
This is identical to `G[u][v][key]` except the default is returned
|
| 906 |
+
instead of an exception is the edge doesn't exist.
|
| 907 |
+
|
| 908 |
+
Parameters
|
| 909 |
+
----------
|
| 910 |
+
u, v : nodes
|
| 911 |
+
|
| 912 |
+
default : any Python object (default=None)
|
| 913 |
+
Value to return if the specific edge (u, v, key) is not
|
| 914 |
+
found, OR if there are no edges between u and v and no key
|
| 915 |
+
is specified.
|
| 916 |
+
|
| 917 |
+
key : hashable identifier, optional (default=None)
|
| 918 |
+
Return data only for the edge with specified key, as an
|
| 919 |
+
attribute dictionary (rather than a dictionary mapping keys
|
| 920 |
+
to attribute dictionaries).
|
| 921 |
+
|
| 922 |
+
Returns
|
| 923 |
+
-------
|
| 924 |
+
edge_dict : dictionary
|
| 925 |
+
The edge attribute dictionary, OR a dictionary mapping edge
|
| 926 |
+
keys to attribute dictionaries for each of those edges if no
|
| 927 |
+
specific key is provided (even if there's only one edge
|
| 928 |
+
between u and v).
|
| 929 |
+
|
| 930 |
+
Examples
|
| 931 |
+
--------
|
| 932 |
+
>>> G = nx.MultiGraph() # or MultiDiGraph
|
| 933 |
+
>>> key = G.add_edge(0, 1, key="a", weight=7)
|
| 934 |
+
>>> G[0][1]["a"] # key='a'
|
| 935 |
+
{'weight': 7}
|
| 936 |
+
>>> G.edges[0, 1, "a"] # key='a'
|
| 937 |
+
{'weight': 7}
|
| 938 |
+
|
| 939 |
+
Warning: we protect the graph data structure by making
|
| 940 |
+
`G.edges` and `G[1][2]` read-only dict-like structures.
|
| 941 |
+
However, you can assign values to attributes in e.g.
|
| 942 |
+
`G.edges[1, 2, 'a']` or `G[1][2]['a']` using an additional
|
| 943 |
+
bracket as shown next. You need to specify all edge info
|
| 944 |
+
to assign to the edge data associated with an edge.
|
| 945 |
+
|
| 946 |
+
>>> G[0][1]["a"]["weight"] = 10
|
| 947 |
+
>>> G.edges[0, 1, "a"]["weight"] = 10
|
| 948 |
+
>>> G[0][1]["a"]["weight"]
|
| 949 |
+
10
|
| 950 |
+
>>> G.edges[1, 0, "a"]["weight"]
|
| 951 |
+
10
|
| 952 |
+
|
| 953 |
+
>>> G = nx.MultiGraph() # or MultiDiGraph
|
| 954 |
+
>>> nx.add_path(G, [0, 1, 2, 3])
|
| 955 |
+
>>> G.edges[0, 1, 0]["weight"] = 5
|
| 956 |
+
>>> G.get_edge_data(0, 1)
|
| 957 |
+
{0: {'weight': 5}}
|
| 958 |
+
>>> e = (0, 1)
|
| 959 |
+
>>> G.get_edge_data(*e) # tuple form
|
| 960 |
+
{0: {'weight': 5}}
|
| 961 |
+
>>> G.get_edge_data(3, 0) # edge not in graph, returns None
|
| 962 |
+
>>> G.get_edge_data(3, 0, default=0) # edge not in graph, return default
|
| 963 |
+
0
|
| 964 |
+
>>> G.get_edge_data(1, 0, 0) # specific key gives back
|
| 965 |
+
{'weight': 5}
|
| 966 |
+
"""
|
| 967 |
+
try:
|
| 968 |
+
if key is None:
|
| 969 |
+
return self._adj[u][v]
|
| 970 |
+
else:
|
| 971 |
+
return self._adj[u][v][key]
|
| 972 |
+
except KeyError:
|
| 973 |
+
return default
|
| 974 |
+
|
| 975 |
+
@cached_property
|
| 976 |
+
def degree(self):
|
| 977 |
+
"""A DegreeView for the Graph as G.degree or G.degree().
|
| 978 |
+
|
| 979 |
+
The node degree is the number of edges adjacent to the node.
|
| 980 |
+
The weighted node degree is the sum of the edge weights for
|
| 981 |
+
edges incident to that node.
|
| 982 |
+
|
| 983 |
+
This object provides an iterator for (node, degree) as well as
|
| 984 |
+
lookup for the degree for a single node.
|
| 985 |
+
|
| 986 |
+
Parameters
|
| 987 |
+
----------
|
| 988 |
+
nbunch : single node, container, or all nodes (default= all nodes)
|
| 989 |
+
The view will only report edges incident to these nodes.
|
| 990 |
+
|
| 991 |
+
weight : string or None, optional (default=None)
|
| 992 |
+
The name of an edge attribute that holds the numerical value used
|
| 993 |
+
as a weight. If None, then each edge has weight 1.
|
| 994 |
+
The degree is the sum of the edge weights adjacent to the node.
|
| 995 |
+
|
| 996 |
+
Returns
|
| 997 |
+
-------
|
| 998 |
+
MultiDegreeView or int
|
| 999 |
+
If multiple nodes are requested (the default), returns a `MultiDegreeView`
|
| 1000 |
+
mapping nodes to their degree.
|
| 1001 |
+
If a single node is requested, returns the degree of the node as an integer.
|
| 1002 |
+
|
| 1003 |
+
Examples
|
| 1004 |
+
--------
|
| 1005 |
+
>>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc
|
| 1006 |
+
>>> nx.add_path(G, [0, 1, 2, 3])
|
| 1007 |
+
>>> G.degree(0) # node 0 with degree 1
|
| 1008 |
+
1
|
| 1009 |
+
>>> list(G.degree([0, 1]))
|
| 1010 |
+
[(0, 1), (1, 2)]
|
| 1011 |
+
|
| 1012 |
+
"""
|
| 1013 |
+
return MultiDegreeView(self)
|
| 1014 |
+
|
| 1015 |
+
def is_multigraph(self):
|
| 1016 |
+
"""Returns True if graph is a multigraph, False otherwise."""
|
| 1017 |
+
return True
|
| 1018 |
+
|
| 1019 |
+
def is_directed(self):
|
| 1020 |
+
"""Returns True if graph is directed, False otherwise."""
|
| 1021 |
+
return False
|
| 1022 |
+
|
| 1023 |
+
def copy(self, as_view=False):
|
| 1024 |
+
"""Returns a copy of the graph.
|
| 1025 |
+
|
| 1026 |
+
The copy method by default returns an independent shallow copy
|
| 1027 |
+
of the graph and attributes. That is, if an attribute is a
|
| 1028 |
+
container, that container is shared by the original an the copy.
|
| 1029 |
+
Use Python's `copy.deepcopy` for new containers.
|
| 1030 |
+
|
| 1031 |
+
If `as_view` is True then a view is returned instead of a copy.
|
| 1032 |
+
|
| 1033 |
+
Notes
|
| 1034 |
+
-----
|
| 1035 |
+
All copies reproduce the graph structure, but data attributes
|
| 1036 |
+
may be handled in different ways. There are four types of copies
|
| 1037 |
+
of a graph that people might want.
|
| 1038 |
+
|
| 1039 |
+
Deepcopy -- A "deepcopy" copies the graph structure as well as
|
| 1040 |
+
all data attributes and any objects they might contain.
|
| 1041 |
+
The entire graph object is new so that changes in the copy
|
| 1042 |
+
do not affect the original object. (see Python's copy.deepcopy)
|
| 1043 |
+
|
| 1044 |
+
Data Reference (Shallow) -- For a shallow copy the graph structure
|
| 1045 |
+
is copied but the edge, node and graph attribute dicts are
|
| 1046 |
+
references to those in the original graph. This saves
|
| 1047 |
+
time and memory but could cause confusion if you change an attribute
|
| 1048 |
+
in one graph and it changes the attribute in the other.
|
| 1049 |
+
NetworkX does not provide this level of shallow copy.
|
| 1050 |
+
|
| 1051 |
+
Independent Shallow -- This copy creates new independent attribute
|
| 1052 |
+
dicts and then does a shallow copy of the attributes. That is, any
|
| 1053 |
+
attributes that are containers are shared between the new graph
|
| 1054 |
+
and the original. This is exactly what `dict.copy()` provides.
|
| 1055 |
+
You can obtain this style copy using:
|
| 1056 |
+
|
| 1057 |
+
>>> G = nx.path_graph(5)
|
| 1058 |
+
>>> H = G.copy()
|
| 1059 |
+
>>> H = G.copy(as_view=False)
|
| 1060 |
+
>>> H = nx.Graph(G)
|
| 1061 |
+
>>> H = G.__class__(G)
|
| 1062 |
+
|
| 1063 |
+
Fresh Data -- For fresh data, the graph structure is copied while
|
| 1064 |
+
new empty data attribute dicts are created. The resulting graph
|
| 1065 |
+
is independent of the original and it has no edge, node or graph
|
| 1066 |
+
attributes. Fresh copies are not enabled. Instead use:
|
| 1067 |
+
|
| 1068 |
+
>>> H = G.__class__()
|
| 1069 |
+
>>> H.add_nodes_from(G)
|
| 1070 |
+
>>> H.add_edges_from(G.edges)
|
| 1071 |
+
|
| 1072 |
+
View -- Inspired by dict-views, graph-views act like read-only
|
| 1073 |
+
versions of the original graph, providing a copy of the original
|
| 1074 |
+
structure without requiring any memory for copying the information.
|
| 1075 |
+
|
| 1076 |
+
See the Python copy module for more information on shallow
|
| 1077 |
+
and deep copies, https://docs.python.org/3/library/copy.html.
|
| 1078 |
+
|
| 1079 |
+
Parameters
|
| 1080 |
+
----------
|
| 1081 |
+
as_view : bool, optional (default=False)
|
| 1082 |
+
If True, the returned graph-view provides a read-only view
|
| 1083 |
+
of the original graph without actually copying any data.
|
| 1084 |
+
|
| 1085 |
+
Returns
|
| 1086 |
+
-------
|
| 1087 |
+
G : Graph
|
| 1088 |
+
A copy of the graph.
|
| 1089 |
+
|
| 1090 |
+
See Also
|
| 1091 |
+
--------
|
| 1092 |
+
to_directed: return a directed copy of the graph.
|
| 1093 |
+
|
| 1094 |
+
Examples
|
| 1095 |
+
--------
|
| 1096 |
+
>>> G = nx.path_graph(4) # or DiGraph, MultiGraph, MultiDiGraph, etc
|
| 1097 |
+
>>> H = G.copy()
|
| 1098 |
+
|
| 1099 |
+
"""
|
| 1100 |
+
if as_view is True:
|
| 1101 |
+
return nx.graphviews.generic_graph_view(self)
|
| 1102 |
+
G = self.__class__()
|
| 1103 |
+
G.graph.update(self.graph)
|
| 1104 |
+
G.add_nodes_from((n, d.copy()) for n, d in self._node.items())
|
| 1105 |
+
G.add_edges_from(
|
| 1106 |
+
(u, v, key, datadict.copy())
|
| 1107 |
+
for u, nbrs in self._adj.items()
|
| 1108 |
+
for v, keydict in nbrs.items()
|
| 1109 |
+
for key, datadict in keydict.items()
|
| 1110 |
+
)
|
| 1111 |
+
return G
|
| 1112 |
+
|
| 1113 |
+
def to_directed(self, as_view=False):
|
| 1114 |
+
"""Returns a directed representation of the graph.
|
| 1115 |
+
|
| 1116 |
+
Returns
|
| 1117 |
+
-------
|
| 1118 |
+
G : MultiDiGraph
|
| 1119 |
+
A directed graph with the same name, same nodes, and with
|
| 1120 |
+
each edge (u, v, k, data) replaced by two directed edges
|
| 1121 |
+
(u, v, k, data) and (v, u, k, data).
|
| 1122 |
+
|
| 1123 |
+
Notes
|
| 1124 |
+
-----
|
| 1125 |
+
This returns a "deepcopy" of the edge, node, and
|
| 1126 |
+
graph attributes which attempts to completely copy
|
| 1127 |
+
all of the data and references.
|
| 1128 |
+
|
| 1129 |
+
This is in contrast to the similar D=MultiDiGraph(G) which
|
| 1130 |
+
returns a shallow copy of the data.
|
| 1131 |
+
|
| 1132 |
+
See the Python copy module for more information on shallow
|
| 1133 |
+
and deep copies, https://docs.python.org/3/library/copy.html.
|
| 1134 |
+
|
| 1135 |
+
Warning: If you have subclassed MultiGraph to use dict-like objects
|
| 1136 |
+
in the data structure, those changes do not transfer to the
|
| 1137 |
+
MultiDiGraph created by this method.
|
| 1138 |
+
|
| 1139 |
+
Examples
|
| 1140 |
+
--------
|
| 1141 |
+
>>> G = nx.MultiGraph()
|
| 1142 |
+
>>> G.add_edge(0, 1)
|
| 1143 |
+
0
|
| 1144 |
+
>>> G.add_edge(0, 1)
|
| 1145 |
+
1
|
| 1146 |
+
>>> H = G.to_directed()
|
| 1147 |
+
>>> list(H.edges)
|
| 1148 |
+
[(0, 1, 0), (0, 1, 1), (1, 0, 0), (1, 0, 1)]
|
| 1149 |
+
|
| 1150 |
+
If already directed, return a (deep) copy
|
| 1151 |
+
|
| 1152 |
+
>>> G = nx.MultiDiGraph()
|
| 1153 |
+
>>> G.add_edge(0, 1)
|
| 1154 |
+
0
|
| 1155 |
+
>>> H = G.to_directed()
|
| 1156 |
+
>>> list(H.edges)
|
| 1157 |
+
[(0, 1, 0)]
|
| 1158 |
+
"""
|
| 1159 |
+
graph_class = self.to_directed_class()
|
| 1160 |
+
if as_view is True:
|
| 1161 |
+
return nx.graphviews.generic_graph_view(self, graph_class)
|
| 1162 |
+
# deepcopy when not a view
|
| 1163 |
+
G = graph_class()
|
| 1164 |
+
G.graph.update(deepcopy(self.graph))
|
| 1165 |
+
G.add_nodes_from((n, deepcopy(d)) for n, d in self._node.items())
|
| 1166 |
+
G.add_edges_from(
|
| 1167 |
+
(u, v, key, deepcopy(datadict))
|
| 1168 |
+
for u, nbrs in self.adj.items()
|
| 1169 |
+
for v, keydict in nbrs.items()
|
| 1170 |
+
for key, datadict in keydict.items()
|
| 1171 |
+
)
|
| 1172 |
+
return G
|
| 1173 |
+
|
| 1174 |
+
def to_undirected(self, as_view=False):
|
| 1175 |
+
"""Returns an undirected copy of the graph.
|
| 1176 |
+
|
| 1177 |
+
Returns
|
| 1178 |
+
-------
|
| 1179 |
+
G : Graph/MultiGraph
|
| 1180 |
+
A deepcopy of the graph.
|
| 1181 |
+
|
| 1182 |
+
See Also
|
| 1183 |
+
--------
|
| 1184 |
+
copy, add_edge, add_edges_from
|
| 1185 |
+
|
| 1186 |
+
Notes
|
| 1187 |
+
-----
|
| 1188 |
+
This returns a "deepcopy" of the edge, node, and
|
| 1189 |
+
graph attributes which attempts to completely copy
|
| 1190 |
+
all of the data and references.
|
| 1191 |
+
|
| 1192 |
+
This is in contrast to the similar `G = nx.MultiGraph(D)`
|
| 1193 |
+
which returns a shallow copy of the data.
|
| 1194 |
+
|
| 1195 |
+
See the Python copy module for more information on shallow
|
| 1196 |
+
and deep copies, https://docs.python.org/3/library/copy.html.
|
| 1197 |
+
|
| 1198 |
+
Warning: If you have subclassed MultiGraph to use dict-like
|
| 1199 |
+
objects in the data structure, those changes do not transfer
|
| 1200 |
+
to the MultiGraph created by this method.
|
| 1201 |
+
|
| 1202 |
+
Examples
|
| 1203 |
+
--------
|
| 1204 |
+
>>> G = nx.MultiGraph([(0, 1), (0, 1), (1, 2)])
|
| 1205 |
+
>>> H = G.to_directed()
|
| 1206 |
+
>>> list(H.edges)
|
| 1207 |
+
[(0, 1, 0), (0, 1, 1), (1, 0, 0), (1, 0, 1), (1, 2, 0), (2, 1, 0)]
|
| 1208 |
+
>>> G2 = H.to_undirected()
|
| 1209 |
+
>>> list(G2.edges)
|
| 1210 |
+
[(0, 1, 0), (0, 1, 1), (1, 2, 0)]
|
| 1211 |
+
"""
|
| 1212 |
+
graph_class = self.to_undirected_class()
|
| 1213 |
+
if as_view is True:
|
| 1214 |
+
return nx.graphviews.generic_graph_view(self, graph_class)
|
| 1215 |
+
# deepcopy when not a view
|
| 1216 |
+
G = graph_class()
|
| 1217 |
+
G.graph.update(deepcopy(self.graph))
|
| 1218 |
+
G.add_nodes_from((n, deepcopy(d)) for n, d in self._node.items())
|
| 1219 |
+
G.add_edges_from(
|
| 1220 |
+
(u, v, key, deepcopy(datadict))
|
| 1221 |
+
for u, nbrs in self._adj.items()
|
| 1222 |
+
for v, keydict in nbrs.items()
|
| 1223 |
+
for key, datadict in keydict.items()
|
| 1224 |
+
)
|
| 1225 |
+
return G
|
| 1226 |
+
|
| 1227 |
+
def number_of_edges(self, u=None, v=None):
|
| 1228 |
+
"""Returns the number of edges between two nodes.
|
| 1229 |
+
|
| 1230 |
+
Parameters
|
| 1231 |
+
----------
|
| 1232 |
+
u, v : nodes, optional (Default=all edges)
|
| 1233 |
+
If u and v are specified, return the number of edges between
|
| 1234 |
+
u and v. Otherwise return the total number of all edges.
|
| 1235 |
+
|
| 1236 |
+
Returns
|
| 1237 |
+
-------
|
| 1238 |
+
nedges : int
|
| 1239 |
+
The number of edges in the graph. If nodes `u` and `v` are
|
| 1240 |
+
specified return the number of edges between those nodes. If
|
| 1241 |
+
the graph is directed, this only returns the number of edges
|
| 1242 |
+
from `u` to `v`.
|
| 1243 |
+
|
| 1244 |
+
See Also
|
| 1245 |
+
--------
|
| 1246 |
+
size
|
| 1247 |
+
|
| 1248 |
+
Examples
|
| 1249 |
+
--------
|
| 1250 |
+
For undirected multigraphs, this method counts the total number
|
| 1251 |
+
of edges in the graph::
|
| 1252 |
+
|
| 1253 |
+
>>> G = nx.MultiGraph()
|
| 1254 |
+
>>> G.add_edges_from([(0, 1), (0, 1), (1, 2)])
|
| 1255 |
+
[0, 1, 0]
|
| 1256 |
+
>>> G.number_of_edges()
|
| 1257 |
+
3
|
| 1258 |
+
|
| 1259 |
+
If you specify two nodes, this counts the total number of edges
|
| 1260 |
+
joining the two nodes::
|
| 1261 |
+
|
| 1262 |
+
>>> G.number_of_edges(0, 1)
|
| 1263 |
+
2
|
| 1264 |
+
|
| 1265 |
+
For directed multigraphs, this method can count the total number
|
| 1266 |
+
of directed edges from `u` to `v`::
|
| 1267 |
+
|
| 1268 |
+
>>> G = nx.MultiDiGraph()
|
| 1269 |
+
>>> G.add_edges_from([(0, 1), (0, 1), (1, 0)])
|
| 1270 |
+
[0, 1, 0]
|
| 1271 |
+
>>> G.number_of_edges(0, 1)
|
| 1272 |
+
2
|
| 1273 |
+
>>> G.number_of_edges(1, 0)
|
| 1274 |
+
1
|
| 1275 |
+
|
| 1276 |
+
"""
|
| 1277 |
+
if u is None:
|
| 1278 |
+
return self.size()
|
| 1279 |
+
try:
|
| 1280 |
+
edgedata = self._adj[u][v]
|
| 1281 |
+
except KeyError:
|
| 1282 |
+
return 0 # no such edge
|
| 1283 |
+
return len(edgedata)
|
minigpt2/lib/python3.10/site-packages/networkx/classes/reportviews.py
ADDED
|
@@ -0,0 +1,1447 @@
|
|
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|
| 1 |
+
"""
|
| 2 |
+
View Classes provide node, edge and degree "views" of a graph.
|
| 3 |
+
|
| 4 |
+
Views for nodes, edges and degree are provided for all base graph classes.
|
| 5 |
+
A view means a read-only object that is quick to create, automatically
|
| 6 |
+
updated when the graph changes, and provides basic access like `n in V`,
|
| 7 |
+
`for n in V`, `V[n]` and sometimes set operations.
|
| 8 |
+
|
| 9 |
+
The views are read-only iterable containers that are updated as the
|
| 10 |
+
graph is updated. As with dicts, the graph should not be updated
|
| 11 |
+
while iterating through the view. Views can be iterated multiple times.
|
| 12 |
+
|
| 13 |
+
Edge and Node views also allow data attribute lookup.
|
| 14 |
+
The resulting attribute dict is writable as `G.edges[3, 4]['color']='red'`
|
| 15 |
+
Degree views allow lookup of degree values for single nodes.
|
| 16 |
+
Weighted degree is supported with the `weight` argument.
|
| 17 |
+
|
| 18 |
+
NodeView
|
| 19 |
+
========
|
| 20 |
+
|
| 21 |
+
`V = G.nodes` (or `V = G.nodes()`) allows `len(V)`, `n in V`, set
|
| 22 |
+
operations e.g. "G.nodes & H.nodes", and `dd = G.nodes[n]`, where
|
| 23 |
+
`dd` is the node data dict. Iteration is over the nodes by default.
|
| 24 |
+
|
| 25 |
+
NodeDataView
|
| 26 |
+
============
|
| 27 |
+
|
| 28 |
+
To iterate over (node, data) pairs, use arguments to `G.nodes()`
|
| 29 |
+
to create a DataView e.g. `DV = G.nodes(data='color', default='red')`.
|
| 30 |
+
The DataView iterates as `for n, color in DV` and allows
|
| 31 |
+
`(n, 'red') in DV`. Using `DV = G.nodes(data=True)`, the DataViews
|
| 32 |
+
use the full datadict in writeable form also allowing contain testing as
|
| 33 |
+
`(n, {'color': 'red'}) in VD`. DataViews allow set operations when
|
| 34 |
+
data attributes are hashable.
|
| 35 |
+
|
| 36 |
+
DegreeView
|
| 37 |
+
==========
|
| 38 |
+
|
| 39 |
+
`V = G.degree` allows iteration over (node, degree) pairs as well
|
| 40 |
+
as lookup: `deg=V[n]`. There are many flavors of DegreeView
|
| 41 |
+
for In/Out/Directed/Multi. For Directed Graphs, `G.degree`
|
| 42 |
+
counts both in and out going edges. `G.out_degree` and
|
| 43 |
+
`G.in_degree` count only specific directions.
|
| 44 |
+
Weighted degree using edge data attributes is provide via
|
| 45 |
+
`V = G.degree(weight='attr_name')` where any string with the
|
| 46 |
+
attribute name can be used. `weight=None` is the default.
|
| 47 |
+
No set operations are implemented for degrees, use NodeView.
|
| 48 |
+
|
| 49 |
+
The argument `nbunch` restricts iteration to nodes in nbunch.
|
| 50 |
+
The DegreeView can still lookup any node even if nbunch is specified.
|
| 51 |
+
|
| 52 |
+
EdgeView
|
| 53 |
+
========
|
| 54 |
+
|
| 55 |
+
`V = G.edges` or `V = G.edges()` allows iteration over edges as well as
|
| 56 |
+
`e in V`, set operations and edge data lookup `dd = G.edges[2, 3]`.
|
| 57 |
+
Iteration is over 2-tuples `(u, v)` for Graph/DiGraph. For multigraphs
|
| 58 |
+
edges 3-tuples `(u, v, key)` are the default but 2-tuples can be obtained
|
| 59 |
+
via `V = G.edges(keys=False)`.
|
| 60 |
+
|
| 61 |
+
Set operations for directed graphs treat the edges as a set of 2-tuples.
|
| 62 |
+
For undirected graphs, 2-tuples are not a unique representation of edges.
|
| 63 |
+
So long as the set being compared to contains unique representations
|
| 64 |
+
of its edges, the set operations will act as expected. If the other
|
| 65 |
+
set contains both `(0, 1)` and `(1, 0)` however, the result of set
|
| 66 |
+
operations may contain both representations of the same edge.
|
| 67 |
+
|
| 68 |
+
EdgeDataView
|
| 69 |
+
============
|
| 70 |
+
|
| 71 |
+
Edge data can be reported using an EdgeDataView typically created
|
| 72 |
+
by calling an EdgeView: `DV = G.edges(data='weight', default=1)`.
|
| 73 |
+
The EdgeDataView allows iteration over edge tuples, membership checking
|
| 74 |
+
but no set operations.
|
| 75 |
+
|
| 76 |
+
Iteration depends on `data` and `default` and for multigraph `keys`
|
| 77 |
+
If `data is False` (the default) then iterate over 2-tuples `(u, v)`.
|
| 78 |
+
If `data is True` iterate over 3-tuples `(u, v, datadict)`.
|
| 79 |
+
Otherwise iterate over `(u, v, datadict.get(data, default))`.
|
| 80 |
+
For Multigraphs, if `keys is True`, replace `u, v` with `u, v, key`
|
| 81 |
+
to create 3-tuples and 4-tuples.
|
| 82 |
+
|
| 83 |
+
The argument `nbunch` restricts edges to those incident to nodes in nbunch.
|
| 84 |
+
"""
|
| 85 |
+
|
| 86 |
+
from abc import ABC
|
| 87 |
+
from collections.abc import Mapping, Set
|
| 88 |
+
|
| 89 |
+
import networkx as nx
|
| 90 |
+
|
| 91 |
+
__all__ = [
|
| 92 |
+
"NodeView",
|
| 93 |
+
"NodeDataView",
|
| 94 |
+
"EdgeView",
|
| 95 |
+
"OutEdgeView",
|
| 96 |
+
"InEdgeView",
|
| 97 |
+
"EdgeDataView",
|
| 98 |
+
"OutEdgeDataView",
|
| 99 |
+
"InEdgeDataView",
|
| 100 |
+
"MultiEdgeView",
|
| 101 |
+
"OutMultiEdgeView",
|
| 102 |
+
"InMultiEdgeView",
|
| 103 |
+
"MultiEdgeDataView",
|
| 104 |
+
"OutMultiEdgeDataView",
|
| 105 |
+
"InMultiEdgeDataView",
|
| 106 |
+
"DegreeView",
|
| 107 |
+
"DiDegreeView",
|
| 108 |
+
"InDegreeView",
|
| 109 |
+
"OutDegreeView",
|
| 110 |
+
"MultiDegreeView",
|
| 111 |
+
"DiMultiDegreeView",
|
| 112 |
+
"InMultiDegreeView",
|
| 113 |
+
"OutMultiDegreeView",
|
| 114 |
+
]
|
| 115 |
+
|
| 116 |
+
|
| 117 |
+
# NodeViews
|
| 118 |
+
class NodeView(Mapping, Set):
|
| 119 |
+
"""A NodeView class to act as G.nodes for a NetworkX Graph
|
| 120 |
+
|
| 121 |
+
Set operations act on the nodes without considering data.
|
| 122 |
+
Iteration is over nodes. Node data can be looked up like a dict.
|
| 123 |
+
Use NodeDataView to iterate over node data or to specify a data
|
| 124 |
+
attribute for lookup. NodeDataView is created by calling the NodeView.
|
| 125 |
+
|
| 126 |
+
Parameters
|
| 127 |
+
----------
|
| 128 |
+
graph : NetworkX graph-like class
|
| 129 |
+
|
| 130 |
+
Examples
|
| 131 |
+
--------
|
| 132 |
+
>>> G = nx.path_graph(3)
|
| 133 |
+
>>> NV = G.nodes()
|
| 134 |
+
>>> 2 in NV
|
| 135 |
+
True
|
| 136 |
+
>>> for n in NV:
|
| 137 |
+
... print(n)
|
| 138 |
+
0
|
| 139 |
+
1
|
| 140 |
+
2
|
| 141 |
+
>>> assert NV & {1, 2, 3} == {1, 2}
|
| 142 |
+
|
| 143 |
+
>>> G.add_node(2, color="blue")
|
| 144 |
+
>>> NV[2]
|
| 145 |
+
{'color': 'blue'}
|
| 146 |
+
>>> G.add_node(8, color="red")
|
| 147 |
+
>>> NDV = G.nodes(data=True)
|
| 148 |
+
>>> (2, NV[2]) in NDV
|
| 149 |
+
True
|
| 150 |
+
>>> for n, dd in NDV:
|
| 151 |
+
... print((n, dd.get("color", "aqua")))
|
| 152 |
+
(0, 'aqua')
|
| 153 |
+
(1, 'aqua')
|
| 154 |
+
(2, 'blue')
|
| 155 |
+
(8, 'red')
|
| 156 |
+
>>> NDV[2] == NV[2]
|
| 157 |
+
True
|
| 158 |
+
|
| 159 |
+
>>> NVdata = G.nodes(data="color", default="aqua")
|
| 160 |
+
>>> (2, NVdata[2]) in NVdata
|
| 161 |
+
True
|
| 162 |
+
>>> for n, dd in NVdata:
|
| 163 |
+
... print((n, dd))
|
| 164 |
+
(0, 'aqua')
|
| 165 |
+
(1, 'aqua')
|
| 166 |
+
(2, 'blue')
|
| 167 |
+
(8, 'red')
|
| 168 |
+
>>> NVdata[2] == NV[2] # NVdata gets 'color', NV gets datadict
|
| 169 |
+
False
|
| 170 |
+
"""
|
| 171 |
+
|
| 172 |
+
__slots__ = ("_nodes",)
|
| 173 |
+
|
| 174 |
+
def __getstate__(self):
|
| 175 |
+
return {"_nodes": self._nodes}
|
| 176 |
+
|
| 177 |
+
def __setstate__(self, state):
|
| 178 |
+
self._nodes = state["_nodes"]
|
| 179 |
+
|
| 180 |
+
def __init__(self, graph):
|
| 181 |
+
self._nodes = graph._node
|
| 182 |
+
|
| 183 |
+
# Mapping methods
|
| 184 |
+
def __len__(self):
|
| 185 |
+
return len(self._nodes)
|
| 186 |
+
|
| 187 |
+
def __iter__(self):
|
| 188 |
+
return iter(self._nodes)
|
| 189 |
+
|
| 190 |
+
def __getitem__(self, n):
|
| 191 |
+
if isinstance(n, slice):
|
| 192 |
+
raise nx.NetworkXError(
|
| 193 |
+
f"{type(self).__name__} does not support slicing, "
|
| 194 |
+
f"try list(G.nodes)[{n.start}:{n.stop}:{n.step}]"
|
| 195 |
+
)
|
| 196 |
+
return self._nodes[n]
|
| 197 |
+
|
| 198 |
+
# Set methods
|
| 199 |
+
def __contains__(self, n):
|
| 200 |
+
return n in self._nodes
|
| 201 |
+
|
| 202 |
+
@classmethod
|
| 203 |
+
def _from_iterable(cls, it):
|
| 204 |
+
return set(it)
|
| 205 |
+
|
| 206 |
+
# DataView method
|
| 207 |
+
def __call__(self, data=False, default=None):
|
| 208 |
+
if data is False:
|
| 209 |
+
return self
|
| 210 |
+
return NodeDataView(self._nodes, data, default)
|
| 211 |
+
|
| 212 |
+
def data(self, data=True, default=None):
|
| 213 |
+
"""
|
| 214 |
+
Return a read-only view of node data.
|
| 215 |
+
|
| 216 |
+
Parameters
|
| 217 |
+
----------
|
| 218 |
+
data : bool or node data key, default=True
|
| 219 |
+
If ``data=True`` (the default), return a `NodeDataView` object that
|
| 220 |
+
maps each node to *all* of its attributes. `data` may also be an
|
| 221 |
+
arbitrary key, in which case the `NodeDataView` maps each node to
|
| 222 |
+
the value for the keyed attribute. In this case, if a node does
|
| 223 |
+
not have the `data` attribute, the `default` value is used.
|
| 224 |
+
default : object, default=None
|
| 225 |
+
The value used when a node does not have a specific attribute.
|
| 226 |
+
|
| 227 |
+
Returns
|
| 228 |
+
-------
|
| 229 |
+
NodeDataView
|
| 230 |
+
The layout of the returned NodeDataView depends on the value of the
|
| 231 |
+
`data` parameter.
|
| 232 |
+
|
| 233 |
+
Notes
|
| 234 |
+
-----
|
| 235 |
+
If ``data=False``, returns a `NodeView` object without data.
|
| 236 |
+
|
| 237 |
+
See Also
|
| 238 |
+
--------
|
| 239 |
+
NodeDataView
|
| 240 |
+
|
| 241 |
+
Examples
|
| 242 |
+
--------
|
| 243 |
+
>>> G = nx.Graph()
|
| 244 |
+
>>> G.add_nodes_from(
|
| 245 |
+
... [
|
| 246 |
+
... (0, {"color": "red", "weight": 10}),
|
| 247 |
+
... (1, {"color": "blue"}),
|
| 248 |
+
... (2, {"color": "yellow", "weight": 2}),
|
| 249 |
+
... ]
|
| 250 |
+
... )
|
| 251 |
+
|
| 252 |
+
Accessing node data with ``data=True`` (the default) returns a
|
| 253 |
+
NodeDataView mapping each node to all of its attributes:
|
| 254 |
+
|
| 255 |
+
>>> G.nodes.data()
|
| 256 |
+
NodeDataView({0: {'color': 'red', 'weight': 10}, 1: {'color': 'blue'}, 2: {'color': 'yellow', 'weight': 2}})
|
| 257 |
+
|
| 258 |
+
If `data` represents a key in the node attribute dict, a NodeDataView mapping
|
| 259 |
+
the nodes to the value for that specific key is returned:
|
| 260 |
+
|
| 261 |
+
>>> G.nodes.data("color")
|
| 262 |
+
NodeDataView({0: 'red', 1: 'blue', 2: 'yellow'}, data='color')
|
| 263 |
+
|
| 264 |
+
If a specific key is not found in an attribute dict, the value specified
|
| 265 |
+
by `default` is returned:
|
| 266 |
+
|
| 267 |
+
>>> G.nodes.data("weight", default=-999)
|
| 268 |
+
NodeDataView({0: 10, 1: -999, 2: 2}, data='weight')
|
| 269 |
+
|
| 270 |
+
Note that there is no check that the `data` key is in any of the
|
| 271 |
+
node attribute dictionaries:
|
| 272 |
+
|
| 273 |
+
>>> G.nodes.data("height")
|
| 274 |
+
NodeDataView({0: None, 1: None, 2: None}, data='height')
|
| 275 |
+
"""
|
| 276 |
+
if data is False:
|
| 277 |
+
return self
|
| 278 |
+
return NodeDataView(self._nodes, data, default)
|
| 279 |
+
|
| 280 |
+
def __str__(self):
|
| 281 |
+
return str(list(self))
|
| 282 |
+
|
| 283 |
+
def __repr__(self):
|
| 284 |
+
return f"{self.__class__.__name__}({tuple(self)})"
|
| 285 |
+
|
| 286 |
+
|
| 287 |
+
class NodeDataView(Set):
|
| 288 |
+
"""A DataView class for nodes of a NetworkX Graph
|
| 289 |
+
|
| 290 |
+
The main use for this class is to iterate through node-data pairs.
|
| 291 |
+
The data can be the entire data-dictionary for each node, or it
|
| 292 |
+
can be a specific attribute (with default) for each node.
|
| 293 |
+
Set operations are enabled with NodeDataView, but don't work in
|
| 294 |
+
cases where the data is not hashable. Use with caution.
|
| 295 |
+
Typically, set operations on nodes use NodeView, not NodeDataView.
|
| 296 |
+
That is, they use `G.nodes` instead of `G.nodes(data='foo')`.
|
| 297 |
+
|
| 298 |
+
Parameters
|
| 299 |
+
==========
|
| 300 |
+
graph : NetworkX graph-like class
|
| 301 |
+
data : bool or string (default=False)
|
| 302 |
+
default : object (default=None)
|
| 303 |
+
"""
|
| 304 |
+
|
| 305 |
+
__slots__ = ("_nodes", "_data", "_default")
|
| 306 |
+
|
| 307 |
+
def __getstate__(self):
|
| 308 |
+
return {"_nodes": self._nodes, "_data": self._data, "_default": self._default}
|
| 309 |
+
|
| 310 |
+
def __setstate__(self, state):
|
| 311 |
+
self._nodes = state["_nodes"]
|
| 312 |
+
self._data = state["_data"]
|
| 313 |
+
self._default = state["_default"]
|
| 314 |
+
|
| 315 |
+
def __init__(self, nodedict, data=False, default=None):
|
| 316 |
+
self._nodes = nodedict
|
| 317 |
+
self._data = data
|
| 318 |
+
self._default = default
|
| 319 |
+
|
| 320 |
+
@classmethod
|
| 321 |
+
def _from_iterable(cls, it):
|
| 322 |
+
try:
|
| 323 |
+
return set(it)
|
| 324 |
+
except TypeError as err:
|
| 325 |
+
if "unhashable" in str(err):
|
| 326 |
+
msg = " : Could be b/c data=True or your values are unhashable"
|
| 327 |
+
raise TypeError(str(err) + msg) from err
|
| 328 |
+
raise
|
| 329 |
+
|
| 330 |
+
def __len__(self):
|
| 331 |
+
return len(self._nodes)
|
| 332 |
+
|
| 333 |
+
def __iter__(self):
|
| 334 |
+
data = self._data
|
| 335 |
+
if data is False:
|
| 336 |
+
return iter(self._nodes)
|
| 337 |
+
if data is True:
|
| 338 |
+
return iter(self._nodes.items())
|
| 339 |
+
return (
|
| 340 |
+
(n, dd[data] if data in dd else self._default)
|
| 341 |
+
for n, dd in self._nodes.items()
|
| 342 |
+
)
|
| 343 |
+
|
| 344 |
+
def __contains__(self, n):
|
| 345 |
+
try:
|
| 346 |
+
node_in = n in self._nodes
|
| 347 |
+
except TypeError:
|
| 348 |
+
n, d = n
|
| 349 |
+
return n in self._nodes and self[n] == d
|
| 350 |
+
if node_in is True:
|
| 351 |
+
return node_in
|
| 352 |
+
try:
|
| 353 |
+
n, d = n
|
| 354 |
+
except (TypeError, ValueError):
|
| 355 |
+
return False
|
| 356 |
+
return n in self._nodes and self[n] == d
|
| 357 |
+
|
| 358 |
+
def __getitem__(self, n):
|
| 359 |
+
if isinstance(n, slice):
|
| 360 |
+
raise nx.NetworkXError(
|
| 361 |
+
f"{type(self).__name__} does not support slicing, "
|
| 362 |
+
f"try list(G.nodes.data())[{n.start}:{n.stop}:{n.step}]"
|
| 363 |
+
)
|
| 364 |
+
ddict = self._nodes[n]
|
| 365 |
+
data = self._data
|
| 366 |
+
if data is False or data is True:
|
| 367 |
+
return ddict
|
| 368 |
+
return ddict[data] if data in ddict else self._default
|
| 369 |
+
|
| 370 |
+
def __str__(self):
|
| 371 |
+
return str(list(self))
|
| 372 |
+
|
| 373 |
+
def __repr__(self):
|
| 374 |
+
name = self.__class__.__name__
|
| 375 |
+
if self._data is False:
|
| 376 |
+
return f"{name}({tuple(self)})"
|
| 377 |
+
if self._data is True:
|
| 378 |
+
return f"{name}({dict(self)})"
|
| 379 |
+
return f"{name}({dict(self)}, data={self._data!r})"
|
| 380 |
+
|
| 381 |
+
|
| 382 |
+
# DegreeViews
|
| 383 |
+
class DiDegreeView:
|
| 384 |
+
"""A View class for degree of nodes in a NetworkX Graph
|
| 385 |
+
|
| 386 |
+
The functionality is like dict.items() with (node, degree) pairs.
|
| 387 |
+
Additional functionality includes read-only lookup of node degree,
|
| 388 |
+
and calling with optional features nbunch (for only a subset of nodes)
|
| 389 |
+
and weight (use edge weights to compute degree).
|
| 390 |
+
|
| 391 |
+
Parameters
|
| 392 |
+
==========
|
| 393 |
+
graph : NetworkX graph-like class
|
| 394 |
+
nbunch : node, container of nodes, or None meaning all nodes (default=None)
|
| 395 |
+
weight : bool or string (default=None)
|
| 396 |
+
|
| 397 |
+
Notes
|
| 398 |
+
-----
|
| 399 |
+
DegreeView can still lookup any node even if nbunch is specified.
|
| 400 |
+
|
| 401 |
+
Examples
|
| 402 |
+
--------
|
| 403 |
+
>>> G = nx.path_graph(3)
|
| 404 |
+
>>> DV = G.degree()
|
| 405 |
+
>>> assert DV[2] == 1
|
| 406 |
+
>>> assert sum(deg for n, deg in DV) == 4
|
| 407 |
+
|
| 408 |
+
>>> DVweight = G.degree(weight="span")
|
| 409 |
+
>>> G.add_edge(1, 2, span=34)
|
| 410 |
+
>>> DVweight[2]
|
| 411 |
+
34
|
| 412 |
+
>>> DVweight[0] # default edge weight is 1
|
| 413 |
+
1
|
| 414 |
+
>>> sum(span for n, span in DVweight) # sum weighted degrees
|
| 415 |
+
70
|
| 416 |
+
|
| 417 |
+
>>> DVnbunch = G.degree(nbunch=(1, 2))
|
| 418 |
+
>>> assert len(list(DVnbunch)) == 2 # iteration over nbunch only
|
| 419 |
+
"""
|
| 420 |
+
|
| 421 |
+
def __init__(self, G, nbunch=None, weight=None):
|
| 422 |
+
self._graph = G
|
| 423 |
+
self._succ = G._succ if hasattr(G, "_succ") else G._adj
|
| 424 |
+
self._pred = G._pred if hasattr(G, "_pred") else G._adj
|
| 425 |
+
self._nodes = self._succ if nbunch is None else list(G.nbunch_iter(nbunch))
|
| 426 |
+
self._weight = weight
|
| 427 |
+
|
| 428 |
+
def __call__(self, nbunch=None, weight=None):
|
| 429 |
+
if nbunch is None:
|
| 430 |
+
if weight == self._weight:
|
| 431 |
+
return self
|
| 432 |
+
return self.__class__(self._graph, None, weight)
|
| 433 |
+
try:
|
| 434 |
+
if nbunch in self._nodes:
|
| 435 |
+
if weight == self._weight:
|
| 436 |
+
return self[nbunch]
|
| 437 |
+
return self.__class__(self._graph, None, weight)[nbunch]
|
| 438 |
+
except TypeError:
|
| 439 |
+
pass
|
| 440 |
+
return self.__class__(self._graph, nbunch, weight)
|
| 441 |
+
|
| 442 |
+
def __getitem__(self, n):
|
| 443 |
+
weight = self._weight
|
| 444 |
+
succs = self._succ[n]
|
| 445 |
+
preds = self._pred[n]
|
| 446 |
+
if weight is None:
|
| 447 |
+
return len(succs) + len(preds)
|
| 448 |
+
return sum(dd.get(weight, 1) for dd in succs.values()) + sum(
|
| 449 |
+
dd.get(weight, 1) for dd in preds.values()
|
| 450 |
+
)
|
| 451 |
+
|
| 452 |
+
def __iter__(self):
|
| 453 |
+
weight = self._weight
|
| 454 |
+
if weight is None:
|
| 455 |
+
for n in self._nodes:
|
| 456 |
+
succs = self._succ[n]
|
| 457 |
+
preds = self._pred[n]
|
| 458 |
+
yield (n, len(succs) + len(preds))
|
| 459 |
+
else:
|
| 460 |
+
for n in self._nodes:
|
| 461 |
+
succs = self._succ[n]
|
| 462 |
+
preds = self._pred[n]
|
| 463 |
+
deg = sum(dd.get(weight, 1) for dd in succs.values()) + sum(
|
| 464 |
+
dd.get(weight, 1) for dd in preds.values()
|
| 465 |
+
)
|
| 466 |
+
yield (n, deg)
|
| 467 |
+
|
| 468 |
+
def __len__(self):
|
| 469 |
+
return len(self._nodes)
|
| 470 |
+
|
| 471 |
+
def __str__(self):
|
| 472 |
+
return str(list(self))
|
| 473 |
+
|
| 474 |
+
def __repr__(self):
|
| 475 |
+
return f"{self.__class__.__name__}({dict(self)})"
|
| 476 |
+
|
| 477 |
+
|
| 478 |
+
class DegreeView(DiDegreeView):
|
| 479 |
+
"""A DegreeView class to act as G.degree for a NetworkX Graph
|
| 480 |
+
|
| 481 |
+
Typical usage focuses on iteration over `(node, degree)` pairs.
|
| 482 |
+
The degree is by default the number of edges incident to the node.
|
| 483 |
+
Optional argument `weight` enables weighted degree using the edge
|
| 484 |
+
attribute named in the `weight` argument. Reporting and iteration
|
| 485 |
+
can also be restricted to a subset of nodes using `nbunch`.
|
| 486 |
+
|
| 487 |
+
Additional functionality include node lookup so that `G.degree[n]`
|
| 488 |
+
reported the (possibly weighted) degree of node `n`. Calling the
|
| 489 |
+
view creates a view with different arguments `nbunch` or `weight`.
|
| 490 |
+
|
| 491 |
+
Parameters
|
| 492 |
+
==========
|
| 493 |
+
graph : NetworkX graph-like class
|
| 494 |
+
nbunch : node, container of nodes, or None meaning all nodes (default=None)
|
| 495 |
+
weight : string or None (default=None)
|
| 496 |
+
|
| 497 |
+
Notes
|
| 498 |
+
-----
|
| 499 |
+
DegreeView can still lookup any node even if nbunch is specified.
|
| 500 |
+
|
| 501 |
+
Examples
|
| 502 |
+
--------
|
| 503 |
+
>>> G = nx.path_graph(3)
|
| 504 |
+
>>> DV = G.degree()
|
| 505 |
+
>>> assert DV[2] == 1
|
| 506 |
+
>>> assert G.degree[2] == 1
|
| 507 |
+
>>> assert sum(deg for n, deg in DV) == 4
|
| 508 |
+
|
| 509 |
+
>>> DVweight = G.degree(weight="span")
|
| 510 |
+
>>> G.add_edge(1, 2, span=34)
|
| 511 |
+
>>> DVweight[2]
|
| 512 |
+
34
|
| 513 |
+
>>> DVweight[0] # default edge weight is 1
|
| 514 |
+
1
|
| 515 |
+
>>> sum(span for n, span in DVweight) # sum weighted degrees
|
| 516 |
+
70
|
| 517 |
+
|
| 518 |
+
>>> DVnbunch = G.degree(nbunch=(1, 2))
|
| 519 |
+
>>> assert len(list(DVnbunch)) == 2 # iteration over nbunch only
|
| 520 |
+
"""
|
| 521 |
+
|
| 522 |
+
def __getitem__(self, n):
|
| 523 |
+
weight = self._weight
|
| 524 |
+
nbrs = self._succ[n]
|
| 525 |
+
if weight is None:
|
| 526 |
+
return len(nbrs) + (n in nbrs)
|
| 527 |
+
return sum(dd.get(weight, 1) for dd in nbrs.values()) + (
|
| 528 |
+
n in nbrs and nbrs[n].get(weight, 1)
|
| 529 |
+
)
|
| 530 |
+
|
| 531 |
+
def __iter__(self):
|
| 532 |
+
weight = self._weight
|
| 533 |
+
if weight is None:
|
| 534 |
+
for n in self._nodes:
|
| 535 |
+
nbrs = self._succ[n]
|
| 536 |
+
yield (n, len(nbrs) + (n in nbrs))
|
| 537 |
+
else:
|
| 538 |
+
for n in self._nodes:
|
| 539 |
+
nbrs = self._succ[n]
|
| 540 |
+
deg = sum(dd.get(weight, 1) for dd in nbrs.values()) + (
|
| 541 |
+
n in nbrs and nbrs[n].get(weight, 1)
|
| 542 |
+
)
|
| 543 |
+
yield (n, deg)
|
| 544 |
+
|
| 545 |
+
|
| 546 |
+
class OutDegreeView(DiDegreeView):
|
| 547 |
+
"""A DegreeView class to report out_degree for a DiGraph; See DegreeView"""
|
| 548 |
+
|
| 549 |
+
def __getitem__(self, n):
|
| 550 |
+
weight = self._weight
|
| 551 |
+
nbrs = self._succ[n]
|
| 552 |
+
if self._weight is None:
|
| 553 |
+
return len(nbrs)
|
| 554 |
+
return sum(dd.get(self._weight, 1) for dd in nbrs.values())
|
| 555 |
+
|
| 556 |
+
def __iter__(self):
|
| 557 |
+
weight = self._weight
|
| 558 |
+
if weight is None:
|
| 559 |
+
for n in self._nodes:
|
| 560 |
+
succs = self._succ[n]
|
| 561 |
+
yield (n, len(succs))
|
| 562 |
+
else:
|
| 563 |
+
for n in self._nodes:
|
| 564 |
+
succs = self._succ[n]
|
| 565 |
+
deg = sum(dd.get(weight, 1) for dd in succs.values())
|
| 566 |
+
yield (n, deg)
|
| 567 |
+
|
| 568 |
+
|
| 569 |
+
class InDegreeView(DiDegreeView):
|
| 570 |
+
"""A DegreeView class to report in_degree for a DiGraph; See DegreeView"""
|
| 571 |
+
|
| 572 |
+
def __getitem__(self, n):
|
| 573 |
+
weight = self._weight
|
| 574 |
+
nbrs = self._pred[n]
|
| 575 |
+
if weight is None:
|
| 576 |
+
return len(nbrs)
|
| 577 |
+
return sum(dd.get(weight, 1) for dd in nbrs.values())
|
| 578 |
+
|
| 579 |
+
def __iter__(self):
|
| 580 |
+
weight = self._weight
|
| 581 |
+
if weight is None:
|
| 582 |
+
for n in self._nodes:
|
| 583 |
+
preds = self._pred[n]
|
| 584 |
+
yield (n, len(preds))
|
| 585 |
+
else:
|
| 586 |
+
for n in self._nodes:
|
| 587 |
+
preds = self._pred[n]
|
| 588 |
+
deg = sum(dd.get(weight, 1) for dd in preds.values())
|
| 589 |
+
yield (n, deg)
|
| 590 |
+
|
| 591 |
+
|
| 592 |
+
class MultiDegreeView(DiDegreeView):
|
| 593 |
+
"""A DegreeView class for undirected multigraphs; See DegreeView"""
|
| 594 |
+
|
| 595 |
+
def __getitem__(self, n):
|
| 596 |
+
weight = self._weight
|
| 597 |
+
nbrs = self._succ[n]
|
| 598 |
+
if weight is None:
|
| 599 |
+
return sum(len(keys) for keys in nbrs.values()) + (
|
| 600 |
+
n in nbrs and len(nbrs[n])
|
| 601 |
+
)
|
| 602 |
+
# edge weighted graph - degree is sum of nbr edge weights
|
| 603 |
+
deg = sum(
|
| 604 |
+
d.get(weight, 1) for key_dict in nbrs.values() for d in key_dict.values()
|
| 605 |
+
)
|
| 606 |
+
if n in nbrs:
|
| 607 |
+
deg += sum(d.get(weight, 1) for d in nbrs[n].values())
|
| 608 |
+
return deg
|
| 609 |
+
|
| 610 |
+
def __iter__(self):
|
| 611 |
+
weight = self._weight
|
| 612 |
+
if weight is None:
|
| 613 |
+
for n in self._nodes:
|
| 614 |
+
nbrs = self._succ[n]
|
| 615 |
+
deg = sum(len(keys) for keys in nbrs.values()) + (
|
| 616 |
+
n in nbrs and len(nbrs[n])
|
| 617 |
+
)
|
| 618 |
+
yield (n, deg)
|
| 619 |
+
else:
|
| 620 |
+
for n in self._nodes:
|
| 621 |
+
nbrs = self._succ[n]
|
| 622 |
+
deg = sum(
|
| 623 |
+
d.get(weight, 1)
|
| 624 |
+
for key_dict in nbrs.values()
|
| 625 |
+
for d in key_dict.values()
|
| 626 |
+
)
|
| 627 |
+
if n in nbrs:
|
| 628 |
+
deg += sum(d.get(weight, 1) for d in nbrs[n].values())
|
| 629 |
+
yield (n, deg)
|
| 630 |
+
|
| 631 |
+
|
| 632 |
+
class DiMultiDegreeView(DiDegreeView):
|
| 633 |
+
"""A DegreeView class for MultiDiGraph; See DegreeView"""
|
| 634 |
+
|
| 635 |
+
def __getitem__(self, n):
|
| 636 |
+
weight = self._weight
|
| 637 |
+
succs = self._succ[n]
|
| 638 |
+
preds = self._pred[n]
|
| 639 |
+
if weight is None:
|
| 640 |
+
return sum(len(keys) for keys in succs.values()) + sum(
|
| 641 |
+
len(keys) for keys in preds.values()
|
| 642 |
+
)
|
| 643 |
+
# edge weighted graph - degree is sum of nbr edge weights
|
| 644 |
+
deg = sum(
|
| 645 |
+
d.get(weight, 1) for key_dict in succs.values() for d in key_dict.values()
|
| 646 |
+
) + sum(
|
| 647 |
+
d.get(weight, 1) for key_dict in preds.values() for d in key_dict.values()
|
| 648 |
+
)
|
| 649 |
+
return deg
|
| 650 |
+
|
| 651 |
+
def __iter__(self):
|
| 652 |
+
weight = self._weight
|
| 653 |
+
if weight is None:
|
| 654 |
+
for n in self._nodes:
|
| 655 |
+
succs = self._succ[n]
|
| 656 |
+
preds = self._pred[n]
|
| 657 |
+
deg = sum(len(keys) for keys in succs.values()) + sum(
|
| 658 |
+
len(keys) for keys in preds.values()
|
| 659 |
+
)
|
| 660 |
+
yield (n, deg)
|
| 661 |
+
else:
|
| 662 |
+
for n in self._nodes:
|
| 663 |
+
succs = self._succ[n]
|
| 664 |
+
preds = self._pred[n]
|
| 665 |
+
deg = sum(
|
| 666 |
+
d.get(weight, 1)
|
| 667 |
+
for key_dict in succs.values()
|
| 668 |
+
for d in key_dict.values()
|
| 669 |
+
) + sum(
|
| 670 |
+
d.get(weight, 1)
|
| 671 |
+
for key_dict in preds.values()
|
| 672 |
+
for d in key_dict.values()
|
| 673 |
+
)
|
| 674 |
+
yield (n, deg)
|
| 675 |
+
|
| 676 |
+
|
| 677 |
+
class InMultiDegreeView(DiDegreeView):
|
| 678 |
+
"""A DegreeView class for inward degree of MultiDiGraph; See DegreeView"""
|
| 679 |
+
|
| 680 |
+
def __getitem__(self, n):
|
| 681 |
+
weight = self._weight
|
| 682 |
+
nbrs = self._pred[n]
|
| 683 |
+
if weight is None:
|
| 684 |
+
return sum(len(data) for data in nbrs.values())
|
| 685 |
+
# edge weighted graph - degree is sum of nbr edge weights
|
| 686 |
+
return sum(
|
| 687 |
+
d.get(weight, 1) for key_dict in nbrs.values() for d in key_dict.values()
|
| 688 |
+
)
|
| 689 |
+
|
| 690 |
+
def __iter__(self):
|
| 691 |
+
weight = self._weight
|
| 692 |
+
if weight is None:
|
| 693 |
+
for n in self._nodes:
|
| 694 |
+
nbrs = self._pred[n]
|
| 695 |
+
deg = sum(len(data) for data in nbrs.values())
|
| 696 |
+
yield (n, deg)
|
| 697 |
+
else:
|
| 698 |
+
for n in self._nodes:
|
| 699 |
+
nbrs = self._pred[n]
|
| 700 |
+
deg = sum(
|
| 701 |
+
d.get(weight, 1)
|
| 702 |
+
for key_dict in nbrs.values()
|
| 703 |
+
for d in key_dict.values()
|
| 704 |
+
)
|
| 705 |
+
yield (n, deg)
|
| 706 |
+
|
| 707 |
+
|
| 708 |
+
class OutMultiDegreeView(DiDegreeView):
|
| 709 |
+
"""A DegreeView class for outward degree of MultiDiGraph; See DegreeView"""
|
| 710 |
+
|
| 711 |
+
def __getitem__(self, n):
|
| 712 |
+
weight = self._weight
|
| 713 |
+
nbrs = self._succ[n]
|
| 714 |
+
if weight is None:
|
| 715 |
+
return sum(len(data) for data in nbrs.values())
|
| 716 |
+
# edge weighted graph - degree is sum of nbr edge weights
|
| 717 |
+
return sum(
|
| 718 |
+
d.get(weight, 1) for key_dict in nbrs.values() for d in key_dict.values()
|
| 719 |
+
)
|
| 720 |
+
|
| 721 |
+
def __iter__(self):
|
| 722 |
+
weight = self._weight
|
| 723 |
+
if weight is None:
|
| 724 |
+
for n in self._nodes:
|
| 725 |
+
nbrs = self._succ[n]
|
| 726 |
+
deg = sum(len(data) for data in nbrs.values())
|
| 727 |
+
yield (n, deg)
|
| 728 |
+
else:
|
| 729 |
+
for n in self._nodes:
|
| 730 |
+
nbrs = self._succ[n]
|
| 731 |
+
deg = sum(
|
| 732 |
+
d.get(weight, 1)
|
| 733 |
+
for key_dict in nbrs.values()
|
| 734 |
+
for d in key_dict.values()
|
| 735 |
+
)
|
| 736 |
+
yield (n, deg)
|
| 737 |
+
|
| 738 |
+
|
| 739 |
+
# A base class for all edge views. Ensures all edge view and edge data view
|
| 740 |
+
# objects/classes are captured by `isinstance(obj, EdgeViewABC)` and
|
| 741 |
+
# `issubclass(cls, EdgeViewABC)` respectively
|
| 742 |
+
class EdgeViewABC(ABC):
|
| 743 |
+
pass
|
| 744 |
+
|
| 745 |
+
|
| 746 |
+
# EdgeDataViews
|
| 747 |
+
class OutEdgeDataView(EdgeViewABC):
|
| 748 |
+
"""EdgeDataView for outward edges of DiGraph; See EdgeDataView"""
|
| 749 |
+
|
| 750 |
+
__slots__ = (
|
| 751 |
+
"_viewer",
|
| 752 |
+
"_nbunch",
|
| 753 |
+
"_data",
|
| 754 |
+
"_default",
|
| 755 |
+
"_adjdict",
|
| 756 |
+
"_nodes_nbrs",
|
| 757 |
+
"_report",
|
| 758 |
+
)
|
| 759 |
+
|
| 760 |
+
def __getstate__(self):
|
| 761 |
+
return {
|
| 762 |
+
"viewer": self._viewer,
|
| 763 |
+
"nbunch": self._nbunch,
|
| 764 |
+
"data": self._data,
|
| 765 |
+
"default": self._default,
|
| 766 |
+
}
|
| 767 |
+
|
| 768 |
+
def __setstate__(self, state):
|
| 769 |
+
self.__init__(**state)
|
| 770 |
+
|
| 771 |
+
def __init__(self, viewer, nbunch=None, data=False, *, default=None):
|
| 772 |
+
self._viewer = viewer
|
| 773 |
+
adjdict = self._adjdict = viewer._adjdict
|
| 774 |
+
if nbunch is None:
|
| 775 |
+
self._nodes_nbrs = adjdict.items
|
| 776 |
+
else:
|
| 777 |
+
# dict retains order of nodes but acts like a set
|
| 778 |
+
nbunch = dict.fromkeys(viewer._graph.nbunch_iter(nbunch))
|
| 779 |
+
self._nodes_nbrs = lambda: [(n, adjdict[n]) for n in nbunch]
|
| 780 |
+
self._nbunch = nbunch
|
| 781 |
+
self._data = data
|
| 782 |
+
self._default = default
|
| 783 |
+
# Set _report based on data and default
|
| 784 |
+
if data is True:
|
| 785 |
+
self._report = lambda n, nbr, dd: (n, nbr, dd)
|
| 786 |
+
elif data is False:
|
| 787 |
+
self._report = lambda n, nbr, dd: (n, nbr)
|
| 788 |
+
else: # data is attribute name
|
| 789 |
+
self._report = (
|
| 790 |
+
lambda n, nbr, dd: (n, nbr, dd[data])
|
| 791 |
+
if data in dd
|
| 792 |
+
else (n, nbr, default)
|
| 793 |
+
)
|
| 794 |
+
|
| 795 |
+
def __len__(self):
|
| 796 |
+
return sum(len(nbrs) for n, nbrs in self._nodes_nbrs())
|
| 797 |
+
|
| 798 |
+
def __iter__(self):
|
| 799 |
+
return (
|
| 800 |
+
self._report(n, nbr, dd)
|
| 801 |
+
for n, nbrs in self._nodes_nbrs()
|
| 802 |
+
for nbr, dd in nbrs.items()
|
| 803 |
+
)
|
| 804 |
+
|
| 805 |
+
def __contains__(self, e):
|
| 806 |
+
u, v = e[:2]
|
| 807 |
+
if self._nbunch is not None and u not in self._nbunch:
|
| 808 |
+
return False # this edge doesn't start in nbunch
|
| 809 |
+
try:
|
| 810 |
+
ddict = self._adjdict[u][v]
|
| 811 |
+
except KeyError:
|
| 812 |
+
return False
|
| 813 |
+
return e == self._report(u, v, ddict)
|
| 814 |
+
|
| 815 |
+
def __str__(self):
|
| 816 |
+
return str(list(self))
|
| 817 |
+
|
| 818 |
+
def __repr__(self):
|
| 819 |
+
return f"{self.__class__.__name__}({list(self)})"
|
| 820 |
+
|
| 821 |
+
|
| 822 |
+
class EdgeDataView(OutEdgeDataView):
|
| 823 |
+
"""A EdgeDataView class for edges of Graph
|
| 824 |
+
|
| 825 |
+
This view is primarily used to iterate over the edges reporting
|
| 826 |
+
edges as node-tuples with edge data optionally reported. The
|
| 827 |
+
argument `nbunch` allows restriction to edges incident to nodes
|
| 828 |
+
in that container/singleton. The default (nbunch=None)
|
| 829 |
+
reports all edges. The arguments `data` and `default` control
|
| 830 |
+
what edge data is reported. The default `data is False` reports
|
| 831 |
+
only node-tuples for each edge. If `data is True` the entire edge
|
| 832 |
+
data dict is returned. Otherwise `data` is assumed to hold the name
|
| 833 |
+
of the edge attribute to report with default `default` if that
|
| 834 |
+
edge attribute is not present.
|
| 835 |
+
|
| 836 |
+
Parameters
|
| 837 |
+
----------
|
| 838 |
+
nbunch : container of nodes, node or None (default None)
|
| 839 |
+
data : False, True or string (default False)
|
| 840 |
+
default : default value (default None)
|
| 841 |
+
|
| 842 |
+
Examples
|
| 843 |
+
--------
|
| 844 |
+
>>> G = nx.path_graph(3)
|
| 845 |
+
>>> G.add_edge(1, 2, foo="bar")
|
| 846 |
+
>>> list(G.edges(data="foo", default="biz"))
|
| 847 |
+
[(0, 1, 'biz'), (1, 2, 'bar')]
|
| 848 |
+
>>> assert (0, 1, "biz") in G.edges(data="foo", default="biz")
|
| 849 |
+
"""
|
| 850 |
+
|
| 851 |
+
__slots__ = ()
|
| 852 |
+
|
| 853 |
+
def __len__(self):
|
| 854 |
+
return sum(1 for e in self)
|
| 855 |
+
|
| 856 |
+
def __iter__(self):
|
| 857 |
+
seen = {}
|
| 858 |
+
for n, nbrs in self._nodes_nbrs():
|
| 859 |
+
for nbr, dd in nbrs.items():
|
| 860 |
+
if nbr not in seen:
|
| 861 |
+
yield self._report(n, nbr, dd)
|
| 862 |
+
seen[n] = 1
|
| 863 |
+
del seen
|
| 864 |
+
|
| 865 |
+
def __contains__(self, e):
|
| 866 |
+
u, v = e[:2]
|
| 867 |
+
if self._nbunch is not None and u not in self._nbunch and v not in self._nbunch:
|
| 868 |
+
return False # this edge doesn't start and it doesn't end in nbunch
|
| 869 |
+
try:
|
| 870 |
+
ddict = self._adjdict[u][v]
|
| 871 |
+
except KeyError:
|
| 872 |
+
return False
|
| 873 |
+
return e == self._report(u, v, ddict)
|
| 874 |
+
|
| 875 |
+
|
| 876 |
+
class InEdgeDataView(OutEdgeDataView):
|
| 877 |
+
"""An EdgeDataView class for outward edges of DiGraph; See EdgeDataView"""
|
| 878 |
+
|
| 879 |
+
__slots__ = ()
|
| 880 |
+
|
| 881 |
+
def __iter__(self):
|
| 882 |
+
return (
|
| 883 |
+
self._report(nbr, n, dd)
|
| 884 |
+
for n, nbrs in self._nodes_nbrs()
|
| 885 |
+
for nbr, dd in nbrs.items()
|
| 886 |
+
)
|
| 887 |
+
|
| 888 |
+
def __contains__(self, e):
|
| 889 |
+
u, v = e[:2]
|
| 890 |
+
if self._nbunch is not None and v not in self._nbunch:
|
| 891 |
+
return False # this edge doesn't end in nbunch
|
| 892 |
+
try:
|
| 893 |
+
ddict = self._adjdict[v][u]
|
| 894 |
+
except KeyError:
|
| 895 |
+
return False
|
| 896 |
+
return e == self._report(u, v, ddict)
|
| 897 |
+
|
| 898 |
+
|
| 899 |
+
class OutMultiEdgeDataView(OutEdgeDataView):
|
| 900 |
+
"""An EdgeDataView for outward edges of MultiDiGraph; See EdgeDataView"""
|
| 901 |
+
|
| 902 |
+
__slots__ = ("keys",)
|
| 903 |
+
|
| 904 |
+
def __getstate__(self):
|
| 905 |
+
return {
|
| 906 |
+
"viewer": self._viewer,
|
| 907 |
+
"nbunch": self._nbunch,
|
| 908 |
+
"keys": self.keys,
|
| 909 |
+
"data": self._data,
|
| 910 |
+
"default": self._default,
|
| 911 |
+
}
|
| 912 |
+
|
| 913 |
+
def __setstate__(self, state):
|
| 914 |
+
self.__init__(**state)
|
| 915 |
+
|
| 916 |
+
def __init__(self, viewer, nbunch=None, data=False, *, default=None, keys=False):
|
| 917 |
+
self._viewer = viewer
|
| 918 |
+
adjdict = self._adjdict = viewer._adjdict
|
| 919 |
+
self.keys = keys
|
| 920 |
+
if nbunch is None:
|
| 921 |
+
self._nodes_nbrs = adjdict.items
|
| 922 |
+
else:
|
| 923 |
+
# dict retains order of nodes but acts like a set
|
| 924 |
+
nbunch = dict.fromkeys(viewer._graph.nbunch_iter(nbunch))
|
| 925 |
+
self._nodes_nbrs = lambda: [(n, adjdict[n]) for n in nbunch]
|
| 926 |
+
self._nbunch = nbunch
|
| 927 |
+
self._data = data
|
| 928 |
+
self._default = default
|
| 929 |
+
# Set _report based on data and default
|
| 930 |
+
if data is True:
|
| 931 |
+
if keys is True:
|
| 932 |
+
self._report = lambda n, nbr, k, dd: (n, nbr, k, dd)
|
| 933 |
+
else:
|
| 934 |
+
self._report = lambda n, nbr, k, dd: (n, nbr, dd)
|
| 935 |
+
elif data is False:
|
| 936 |
+
if keys is True:
|
| 937 |
+
self._report = lambda n, nbr, k, dd: (n, nbr, k)
|
| 938 |
+
else:
|
| 939 |
+
self._report = lambda n, nbr, k, dd: (n, nbr)
|
| 940 |
+
else: # data is attribute name
|
| 941 |
+
if keys is True:
|
| 942 |
+
self._report = (
|
| 943 |
+
lambda n, nbr, k, dd: (n, nbr, k, dd[data])
|
| 944 |
+
if data in dd
|
| 945 |
+
else (n, nbr, k, default)
|
| 946 |
+
)
|
| 947 |
+
else:
|
| 948 |
+
self._report = (
|
| 949 |
+
lambda n, nbr, k, dd: (n, nbr, dd[data])
|
| 950 |
+
if data in dd
|
| 951 |
+
else (n, nbr, default)
|
| 952 |
+
)
|
| 953 |
+
|
| 954 |
+
def __len__(self):
|
| 955 |
+
return sum(1 for e in self)
|
| 956 |
+
|
| 957 |
+
def __iter__(self):
|
| 958 |
+
return (
|
| 959 |
+
self._report(n, nbr, k, dd)
|
| 960 |
+
for n, nbrs in self._nodes_nbrs()
|
| 961 |
+
for nbr, kd in nbrs.items()
|
| 962 |
+
for k, dd in kd.items()
|
| 963 |
+
)
|
| 964 |
+
|
| 965 |
+
def __contains__(self, e):
|
| 966 |
+
u, v = e[:2]
|
| 967 |
+
if self._nbunch is not None and u not in self._nbunch:
|
| 968 |
+
return False # this edge doesn't start in nbunch
|
| 969 |
+
try:
|
| 970 |
+
kdict = self._adjdict[u][v]
|
| 971 |
+
except KeyError:
|
| 972 |
+
return False
|
| 973 |
+
if self.keys is True:
|
| 974 |
+
k = e[2]
|
| 975 |
+
try:
|
| 976 |
+
dd = kdict[k]
|
| 977 |
+
except KeyError:
|
| 978 |
+
return False
|
| 979 |
+
return e == self._report(u, v, k, dd)
|
| 980 |
+
return any(e == self._report(u, v, k, dd) for k, dd in kdict.items())
|
| 981 |
+
|
| 982 |
+
|
| 983 |
+
class MultiEdgeDataView(OutMultiEdgeDataView):
|
| 984 |
+
"""An EdgeDataView class for edges of MultiGraph; See EdgeDataView"""
|
| 985 |
+
|
| 986 |
+
__slots__ = ()
|
| 987 |
+
|
| 988 |
+
def __iter__(self):
|
| 989 |
+
seen = {}
|
| 990 |
+
for n, nbrs in self._nodes_nbrs():
|
| 991 |
+
for nbr, kd in nbrs.items():
|
| 992 |
+
if nbr not in seen:
|
| 993 |
+
for k, dd in kd.items():
|
| 994 |
+
yield self._report(n, nbr, k, dd)
|
| 995 |
+
seen[n] = 1
|
| 996 |
+
del seen
|
| 997 |
+
|
| 998 |
+
def __contains__(self, e):
|
| 999 |
+
u, v = e[:2]
|
| 1000 |
+
if self._nbunch is not None and u not in self._nbunch and v not in self._nbunch:
|
| 1001 |
+
return False # this edge doesn't start and doesn't end in nbunch
|
| 1002 |
+
try:
|
| 1003 |
+
kdict = self._adjdict[u][v]
|
| 1004 |
+
except KeyError:
|
| 1005 |
+
try:
|
| 1006 |
+
kdict = self._adjdict[v][u]
|
| 1007 |
+
except KeyError:
|
| 1008 |
+
return False
|
| 1009 |
+
if self.keys is True:
|
| 1010 |
+
k = e[2]
|
| 1011 |
+
try:
|
| 1012 |
+
dd = kdict[k]
|
| 1013 |
+
except KeyError:
|
| 1014 |
+
return False
|
| 1015 |
+
return e == self._report(u, v, k, dd)
|
| 1016 |
+
return any(e == self._report(u, v, k, dd) for k, dd in kdict.items())
|
| 1017 |
+
|
| 1018 |
+
|
| 1019 |
+
class InMultiEdgeDataView(OutMultiEdgeDataView):
|
| 1020 |
+
"""An EdgeDataView for inward edges of MultiDiGraph; See EdgeDataView"""
|
| 1021 |
+
|
| 1022 |
+
__slots__ = ()
|
| 1023 |
+
|
| 1024 |
+
def __iter__(self):
|
| 1025 |
+
return (
|
| 1026 |
+
self._report(nbr, n, k, dd)
|
| 1027 |
+
for n, nbrs in self._nodes_nbrs()
|
| 1028 |
+
for nbr, kd in nbrs.items()
|
| 1029 |
+
for k, dd in kd.items()
|
| 1030 |
+
)
|
| 1031 |
+
|
| 1032 |
+
def __contains__(self, e):
|
| 1033 |
+
u, v = e[:2]
|
| 1034 |
+
if self._nbunch is not None and v not in self._nbunch:
|
| 1035 |
+
return False # this edge doesn't end in nbunch
|
| 1036 |
+
try:
|
| 1037 |
+
kdict = self._adjdict[v][u]
|
| 1038 |
+
except KeyError:
|
| 1039 |
+
return False
|
| 1040 |
+
if self.keys is True:
|
| 1041 |
+
k = e[2]
|
| 1042 |
+
dd = kdict[k]
|
| 1043 |
+
return e == self._report(u, v, k, dd)
|
| 1044 |
+
return any(e == self._report(u, v, k, dd) for k, dd in kdict.items())
|
| 1045 |
+
|
| 1046 |
+
|
| 1047 |
+
# EdgeViews have set operations and no data reported
|
| 1048 |
+
class OutEdgeView(Set, Mapping, EdgeViewABC):
|
| 1049 |
+
"""A EdgeView class for outward edges of a DiGraph"""
|
| 1050 |
+
|
| 1051 |
+
__slots__ = ("_adjdict", "_graph", "_nodes_nbrs")
|
| 1052 |
+
|
| 1053 |
+
def __getstate__(self):
|
| 1054 |
+
return {"_graph": self._graph, "_adjdict": self._adjdict}
|
| 1055 |
+
|
| 1056 |
+
def __setstate__(self, state):
|
| 1057 |
+
self._graph = state["_graph"]
|
| 1058 |
+
self._adjdict = state["_adjdict"]
|
| 1059 |
+
self._nodes_nbrs = self._adjdict.items
|
| 1060 |
+
|
| 1061 |
+
@classmethod
|
| 1062 |
+
def _from_iterable(cls, it):
|
| 1063 |
+
return set(it)
|
| 1064 |
+
|
| 1065 |
+
dataview = OutEdgeDataView
|
| 1066 |
+
|
| 1067 |
+
def __init__(self, G):
|
| 1068 |
+
self._graph = G
|
| 1069 |
+
self._adjdict = G._succ if hasattr(G, "succ") else G._adj
|
| 1070 |
+
self._nodes_nbrs = self._adjdict.items
|
| 1071 |
+
|
| 1072 |
+
# Set methods
|
| 1073 |
+
def __len__(self):
|
| 1074 |
+
return sum(len(nbrs) for n, nbrs in self._nodes_nbrs())
|
| 1075 |
+
|
| 1076 |
+
def __iter__(self):
|
| 1077 |
+
for n, nbrs in self._nodes_nbrs():
|
| 1078 |
+
for nbr in nbrs:
|
| 1079 |
+
yield (n, nbr)
|
| 1080 |
+
|
| 1081 |
+
def __contains__(self, e):
|
| 1082 |
+
try:
|
| 1083 |
+
u, v = e
|
| 1084 |
+
return v in self._adjdict[u]
|
| 1085 |
+
except KeyError:
|
| 1086 |
+
return False
|
| 1087 |
+
|
| 1088 |
+
# Mapping Methods
|
| 1089 |
+
def __getitem__(self, e):
|
| 1090 |
+
if isinstance(e, slice):
|
| 1091 |
+
raise nx.NetworkXError(
|
| 1092 |
+
f"{type(self).__name__} does not support slicing, "
|
| 1093 |
+
f"try list(G.edges)[{e.start}:{e.stop}:{e.step}]"
|
| 1094 |
+
)
|
| 1095 |
+
u, v = e
|
| 1096 |
+
try:
|
| 1097 |
+
return self._adjdict[u][v]
|
| 1098 |
+
except KeyError as ex: # Customize msg to indicate exception origin
|
| 1099 |
+
raise KeyError(f"The edge {e} is not in the graph.")
|
| 1100 |
+
|
| 1101 |
+
# EdgeDataView methods
|
| 1102 |
+
def __call__(self, nbunch=None, data=False, *, default=None):
|
| 1103 |
+
if nbunch is None and data is False:
|
| 1104 |
+
return self
|
| 1105 |
+
return self.dataview(self, nbunch, data, default=default)
|
| 1106 |
+
|
| 1107 |
+
def data(self, data=True, default=None, nbunch=None):
|
| 1108 |
+
"""
|
| 1109 |
+
Return a read-only view of edge data.
|
| 1110 |
+
|
| 1111 |
+
Parameters
|
| 1112 |
+
----------
|
| 1113 |
+
data : bool or edge attribute key
|
| 1114 |
+
If ``data=True``, then the data view maps each edge to a dictionary
|
| 1115 |
+
containing all of its attributes. If `data` is a key in the edge
|
| 1116 |
+
dictionary, then the data view maps each edge to its value for
|
| 1117 |
+
the keyed attribute. In this case, if the edge doesn't have the
|
| 1118 |
+
attribute, the `default` value is returned.
|
| 1119 |
+
default : object, default=None
|
| 1120 |
+
The value used when an edge does not have a specific attribute
|
| 1121 |
+
nbunch : container of nodes, optional (default=None)
|
| 1122 |
+
Allows restriction to edges only involving certain nodes. All edges
|
| 1123 |
+
are considered by default.
|
| 1124 |
+
|
| 1125 |
+
Returns
|
| 1126 |
+
-------
|
| 1127 |
+
dataview
|
| 1128 |
+
Returns an `EdgeDataView` for undirected Graphs, `OutEdgeDataView`
|
| 1129 |
+
for DiGraphs, `MultiEdgeDataView` for MultiGraphs and
|
| 1130 |
+
`OutMultiEdgeDataView` for MultiDiGraphs.
|
| 1131 |
+
|
| 1132 |
+
Notes
|
| 1133 |
+
-----
|
| 1134 |
+
If ``data=False``, returns an `EdgeView` without any edge data.
|
| 1135 |
+
|
| 1136 |
+
See Also
|
| 1137 |
+
--------
|
| 1138 |
+
EdgeDataView
|
| 1139 |
+
OutEdgeDataView
|
| 1140 |
+
MultiEdgeDataView
|
| 1141 |
+
OutMultiEdgeDataView
|
| 1142 |
+
|
| 1143 |
+
Examples
|
| 1144 |
+
--------
|
| 1145 |
+
>>> G = nx.Graph()
|
| 1146 |
+
>>> G.add_edges_from(
|
| 1147 |
+
... [
|
| 1148 |
+
... (0, 1, {"dist": 3, "capacity": 20}),
|
| 1149 |
+
... (1, 2, {"dist": 4}),
|
| 1150 |
+
... (2, 0, {"dist": 5}),
|
| 1151 |
+
... ]
|
| 1152 |
+
... )
|
| 1153 |
+
|
| 1154 |
+
Accessing edge data with ``data=True`` (the default) returns an
|
| 1155 |
+
edge data view object listing each edge with all of its attributes:
|
| 1156 |
+
|
| 1157 |
+
>>> G.edges.data()
|
| 1158 |
+
EdgeDataView([(0, 1, {'dist': 3, 'capacity': 20}), (0, 2, {'dist': 5}), (1, 2, {'dist': 4})])
|
| 1159 |
+
|
| 1160 |
+
If `data` represents a key in the edge attribute dict, a dataview listing
|
| 1161 |
+
each edge with its value for that specific key is returned:
|
| 1162 |
+
|
| 1163 |
+
>>> G.edges.data("dist")
|
| 1164 |
+
EdgeDataView([(0, 1, 3), (0, 2, 5), (1, 2, 4)])
|
| 1165 |
+
|
| 1166 |
+
`nbunch` can be used to limit the edges:
|
| 1167 |
+
|
| 1168 |
+
>>> G.edges.data("dist", nbunch=[0])
|
| 1169 |
+
EdgeDataView([(0, 1, 3), (0, 2, 5)])
|
| 1170 |
+
|
| 1171 |
+
If a specific key is not found in an edge attribute dict, the value
|
| 1172 |
+
specified by `default` is used:
|
| 1173 |
+
|
| 1174 |
+
>>> G.edges.data("capacity")
|
| 1175 |
+
EdgeDataView([(0, 1, 20), (0, 2, None), (1, 2, None)])
|
| 1176 |
+
|
| 1177 |
+
Note that there is no check that the `data` key is present in any of
|
| 1178 |
+
the edge attribute dictionaries:
|
| 1179 |
+
|
| 1180 |
+
>>> G.edges.data("speed")
|
| 1181 |
+
EdgeDataView([(0, 1, None), (0, 2, None), (1, 2, None)])
|
| 1182 |
+
"""
|
| 1183 |
+
if nbunch is None and data is False:
|
| 1184 |
+
return self
|
| 1185 |
+
return self.dataview(self, nbunch, data, default=default)
|
| 1186 |
+
|
| 1187 |
+
# String Methods
|
| 1188 |
+
def __str__(self):
|
| 1189 |
+
return str(list(self))
|
| 1190 |
+
|
| 1191 |
+
def __repr__(self):
|
| 1192 |
+
return f"{self.__class__.__name__}({list(self)})"
|
| 1193 |
+
|
| 1194 |
+
|
| 1195 |
+
class EdgeView(OutEdgeView):
|
| 1196 |
+
"""A EdgeView class for edges of a Graph
|
| 1197 |
+
|
| 1198 |
+
This densely packed View allows iteration over edges, data lookup
|
| 1199 |
+
like a dict and set operations on edges represented by node-tuples.
|
| 1200 |
+
In addition, edge data can be controlled by calling this object
|
| 1201 |
+
possibly creating an EdgeDataView. Typically edges are iterated over
|
| 1202 |
+
and reported as `(u, v)` node tuples or `(u, v, key)` node/key tuples
|
| 1203 |
+
for multigraphs. Those edge representations can also be using to
|
| 1204 |
+
lookup the data dict for any edge. Set operations also are available
|
| 1205 |
+
where those tuples are the elements of the set.
|
| 1206 |
+
Calling this object with optional arguments `data`, `default` and `keys`
|
| 1207 |
+
controls the form of the tuple (see EdgeDataView). Optional argument
|
| 1208 |
+
`nbunch` allows restriction to edges only involving certain nodes.
|
| 1209 |
+
|
| 1210 |
+
If `data is False` (the default) then iterate over 2-tuples `(u, v)`.
|
| 1211 |
+
If `data is True` iterate over 3-tuples `(u, v, datadict)`.
|
| 1212 |
+
Otherwise iterate over `(u, v, datadict.get(data, default))`.
|
| 1213 |
+
For Multigraphs, if `keys is True`, replace `u, v` with `u, v, key` above.
|
| 1214 |
+
|
| 1215 |
+
Parameters
|
| 1216 |
+
==========
|
| 1217 |
+
graph : NetworkX graph-like class
|
| 1218 |
+
nbunch : (default= all nodes in graph) only report edges with these nodes
|
| 1219 |
+
keys : (only for MultiGraph. default=False) report edge key in tuple
|
| 1220 |
+
data : bool or string (default=False) see above
|
| 1221 |
+
default : object (default=None)
|
| 1222 |
+
|
| 1223 |
+
Examples
|
| 1224 |
+
========
|
| 1225 |
+
>>> G = nx.path_graph(4)
|
| 1226 |
+
>>> EV = G.edges()
|
| 1227 |
+
>>> (2, 3) in EV
|
| 1228 |
+
True
|
| 1229 |
+
>>> for u, v in EV:
|
| 1230 |
+
... print((u, v))
|
| 1231 |
+
(0, 1)
|
| 1232 |
+
(1, 2)
|
| 1233 |
+
(2, 3)
|
| 1234 |
+
>>> assert EV & {(1, 2), (3, 4)} == {(1, 2)}
|
| 1235 |
+
|
| 1236 |
+
>>> EVdata = G.edges(data="color", default="aqua")
|
| 1237 |
+
>>> G.add_edge(2, 3, color="blue")
|
| 1238 |
+
>>> assert (2, 3, "blue") in EVdata
|
| 1239 |
+
>>> for u, v, c in EVdata:
|
| 1240 |
+
... print(f"({u}, {v}) has color: {c}")
|
| 1241 |
+
(0, 1) has color: aqua
|
| 1242 |
+
(1, 2) has color: aqua
|
| 1243 |
+
(2, 3) has color: blue
|
| 1244 |
+
|
| 1245 |
+
>>> EVnbunch = G.edges(nbunch=2)
|
| 1246 |
+
>>> assert (2, 3) in EVnbunch
|
| 1247 |
+
>>> assert (0, 1) not in EVnbunch
|
| 1248 |
+
>>> for u, v in EVnbunch:
|
| 1249 |
+
... assert u == 2 or v == 2
|
| 1250 |
+
|
| 1251 |
+
>>> MG = nx.path_graph(4, create_using=nx.MultiGraph)
|
| 1252 |
+
>>> EVmulti = MG.edges(keys=True)
|
| 1253 |
+
>>> (2, 3, 0) in EVmulti
|
| 1254 |
+
True
|
| 1255 |
+
>>> (2, 3) in EVmulti # 2-tuples work even when keys is True
|
| 1256 |
+
True
|
| 1257 |
+
>>> key = MG.add_edge(2, 3)
|
| 1258 |
+
>>> for u, v, k in EVmulti:
|
| 1259 |
+
... print((u, v, k))
|
| 1260 |
+
(0, 1, 0)
|
| 1261 |
+
(1, 2, 0)
|
| 1262 |
+
(2, 3, 0)
|
| 1263 |
+
(2, 3, 1)
|
| 1264 |
+
"""
|
| 1265 |
+
|
| 1266 |
+
__slots__ = ()
|
| 1267 |
+
|
| 1268 |
+
dataview = EdgeDataView
|
| 1269 |
+
|
| 1270 |
+
def __len__(self):
|
| 1271 |
+
num_nbrs = (len(nbrs) + (n in nbrs) for n, nbrs in self._nodes_nbrs())
|
| 1272 |
+
return sum(num_nbrs) // 2
|
| 1273 |
+
|
| 1274 |
+
def __iter__(self):
|
| 1275 |
+
seen = {}
|
| 1276 |
+
for n, nbrs in self._nodes_nbrs():
|
| 1277 |
+
for nbr in list(nbrs):
|
| 1278 |
+
if nbr not in seen:
|
| 1279 |
+
yield (n, nbr)
|
| 1280 |
+
seen[n] = 1
|
| 1281 |
+
del seen
|
| 1282 |
+
|
| 1283 |
+
def __contains__(self, e):
|
| 1284 |
+
try:
|
| 1285 |
+
u, v = e[:2]
|
| 1286 |
+
return v in self._adjdict[u] or u in self._adjdict[v]
|
| 1287 |
+
except (KeyError, ValueError):
|
| 1288 |
+
return False
|
| 1289 |
+
|
| 1290 |
+
|
| 1291 |
+
class InEdgeView(OutEdgeView):
|
| 1292 |
+
"""A EdgeView class for inward edges of a DiGraph"""
|
| 1293 |
+
|
| 1294 |
+
__slots__ = ()
|
| 1295 |
+
|
| 1296 |
+
def __setstate__(self, state):
|
| 1297 |
+
self._graph = state["_graph"]
|
| 1298 |
+
self._adjdict = state["_adjdict"]
|
| 1299 |
+
self._nodes_nbrs = self._adjdict.items
|
| 1300 |
+
|
| 1301 |
+
dataview = InEdgeDataView
|
| 1302 |
+
|
| 1303 |
+
def __init__(self, G):
|
| 1304 |
+
self._graph = G
|
| 1305 |
+
self._adjdict = G._pred if hasattr(G, "pred") else G._adj
|
| 1306 |
+
self._nodes_nbrs = self._adjdict.items
|
| 1307 |
+
|
| 1308 |
+
def __iter__(self):
|
| 1309 |
+
for n, nbrs in self._nodes_nbrs():
|
| 1310 |
+
for nbr in nbrs:
|
| 1311 |
+
yield (nbr, n)
|
| 1312 |
+
|
| 1313 |
+
def __contains__(self, e):
|
| 1314 |
+
try:
|
| 1315 |
+
u, v = e
|
| 1316 |
+
return u in self._adjdict[v]
|
| 1317 |
+
except KeyError:
|
| 1318 |
+
return False
|
| 1319 |
+
|
| 1320 |
+
def __getitem__(self, e):
|
| 1321 |
+
if isinstance(e, slice):
|
| 1322 |
+
raise nx.NetworkXError(
|
| 1323 |
+
f"{type(self).__name__} does not support slicing, "
|
| 1324 |
+
f"try list(G.in_edges)[{e.start}:{e.stop}:{e.step}]"
|
| 1325 |
+
)
|
| 1326 |
+
u, v = e
|
| 1327 |
+
return self._adjdict[v][u]
|
| 1328 |
+
|
| 1329 |
+
|
| 1330 |
+
class OutMultiEdgeView(OutEdgeView):
|
| 1331 |
+
"""A EdgeView class for outward edges of a MultiDiGraph"""
|
| 1332 |
+
|
| 1333 |
+
__slots__ = ()
|
| 1334 |
+
|
| 1335 |
+
dataview = OutMultiEdgeDataView
|
| 1336 |
+
|
| 1337 |
+
def __len__(self):
|
| 1338 |
+
return sum(
|
| 1339 |
+
len(kdict) for n, nbrs in self._nodes_nbrs() for nbr, kdict in nbrs.items()
|
| 1340 |
+
)
|
| 1341 |
+
|
| 1342 |
+
def __iter__(self):
|
| 1343 |
+
for n, nbrs in self._nodes_nbrs():
|
| 1344 |
+
for nbr, kdict in nbrs.items():
|
| 1345 |
+
for key in kdict:
|
| 1346 |
+
yield (n, nbr, key)
|
| 1347 |
+
|
| 1348 |
+
def __contains__(self, e):
|
| 1349 |
+
N = len(e)
|
| 1350 |
+
if N == 3:
|
| 1351 |
+
u, v, k = e
|
| 1352 |
+
elif N == 2:
|
| 1353 |
+
u, v = e
|
| 1354 |
+
k = 0
|
| 1355 |
+
else:
|
| 1356 |
+
raise ValueError("MultiEdge must have length 2 or 3")
|
| 1357 |
+
try:
|
| 1358 |
+
return k in self._adjdict[u][v]
|
| 1359 |
+
except KeyError:
|
| 1360 |
+
return False
|
| 1361 |
+
|
| 1362 |
+
def __getitem__(self, e):
|
| 1363 |
+
if isinstance(e, slice):
|
| 1364 |
+
raise nx.NetworkXError(
|
| 1365 |
+
f"{type(self).__name__} does not support slicing, "
|
| 1366 |
+
f"try list(G.edges)[{e.start}:{e.stop}:{e.step}]"
|
| 1367 |
+
)
|
| 1368 |
+
u, v, k = e
|
| 1369 |
+
return self._adjdict[u][v][k]
|
| 1370 |
+
|
| 1371 |
+
def __call__(self, nbunch=None, data=False, *, default=None, keys=False):
|
| 1372 |
+
if nbunch is None and data is False and keys is True:
|
| 1373 |
+
return self
|
| 1374 |
+
return self.dataview(self, nbunch, data, default=default, keys=keys)
|
| 1375 |
+
|
| 1376 |
+
def data(self, data=True, default=None, nbunch=None, keys=False):
|
| 1377 |
+
if nbunch is None and data is False and keys is True:
|
| 1378 |
+
return self
|
| 1379 |
+
return self.dataview(self, nbunch, data, default=default, keys=keys)
|
| 1380 |
+
|
| 1381 |
+
|
| 1382 |
+
class MultiEdgeView(OutMultiEdgeView):
|
| 1383 |
+
"""A EdgeView class for edges of a MultiGraph"""
|
| 1384 |
+
|
| 1385 |
+
__slots__ = ()
|
| 1386 |
+
|
| 1387 |
+
dataview = MultiEdgeDataView
|
| 1388 |
+
|
| 1389 |
+
def __len__(self):
|
| 1390 |
+
return sum(1 for e in self)
|
| 1391 |
+
|
| 1392 |
+
def __iter__(self):
|
| 1393 |
+
seen = {}
|
| 1394 |
+
for n, nbrs in self._nodes_nbrs():
|
| 1395 |
+
for nbr, kd in nbrs.items():
|
| 1396 |
+
if nbr not in seen:
|
| 1397 |
+
for k, dd in kd.items():
|
| 1398 |
+
yield (n, nbr, k)
|
| 1399 |
+
seen[n] = 1
|
| 1400 |
+
del seen
|
| 1401 |
+
|
| 1402 |
+
|
| 1403 |
+
class InMultiEdgeView(OutMultiEdgeView):
|
| 1404 |
+
"""A EdgeView class for inward edges of a MultiDiGraph"""
|
| 1405 |
+
|
| 1406 |
+
__slots__ = ()
|
| 1407 |
+
|
| 1408 |
+
def __setstate__(self, state):
|
| 1409 |
+
self._graph = state["_graph"]
|
| 1410 |
+
self._adjdict = state["_adjdict"]
|
| 1411 |
+
self._nodes_nbrs = self._adjdict.items
|
| 1412 |
+
|
| 1413 |
+
dataview = InMultiEdgeDataView
|
| 1414 |
+
|
| 1415 |
+
def __init__(self, G):
|
| 1416 |
+
self._graph = G
|
| 1417 |
+
self._adjdict = G._pred if hasattr(G, "pred") else G._adj
|
| 1418 |
+
self._nodes_nbrs = self._adjdict.items
|
| 1419 |
+
|
| 1420 |
+
def __iter__(self):
|
| 1421 |
+
for n, nbrs in self._nodes_nbrs():
|
| 1422 |
+
for nbr, kdict in nbrs.items():
|
| 1423 |
+
for key in kdict:
|
| 1424 |
+
yield (nbr, n, key)
|
| 1425 |
+
|
| 1426 |
+
def __contains__(self, e):
|
| 1427 |
+
N = len(e)
|
| 1428 |
+
if N == 3:
|
| 1429 |
+
u, v, k = e
|
| 1430 |
+
elif N == 2:
|
| 1431 |
+
u, v = e
|
| 1432 |
+
k = 0
|
| 1433 |
+
else:
|
| 1434 |
+
raise ValueError("MultiEdge must have length 2 or 3")
|
| 1435 |
+
try:
|
| 1436 |
+
return k in self._adjdict[v][u]
|
| 1437 |
+
except KeyError:
|
| 1438 |
+
return False
|
| 1439 |
+
|
| 1440 |
+
def __getitem__(self, e):
|
| 1441 |
+
if isinstance(e, slice):
|
| 1442 |
+
raise nx.NetworkXError(
|
| 1443 |
+
f"{type(self).__name__} does not support slicing, "
|
| 1444 |
+
f"try list(G.in_edges)[{e.start}:{e.stop}:{e.step}]"
|
| 1445 |
+
)
|
| 1446 |
+
u, v, k = e
|
| 1447 |
+
return self._adjdict[v][u][k]
|
minigpt2/lib/python3.10/site-packages/networkx/classes/tests/__pycache__/test_filters.cpython-310.pyc
ADDED
|
Binary file (5.03 kB). View file
|
|
|
minigpt2/lib/python3.10/site-packages/networkx/classes/tests/__pycache__/test_function.cpython-310.pyc
ADDED
|
Binary file (27.5 kB). View file
|
|
|
minigpt2/lib/python3.10/site-packages/networkx/classes/tests/__pycache__/test_graphviews.cpython-310.pyc
ADDED
|
Binary file (13.5 kB). View file
|
|
|
minigpt2/lib/python3.10/site-packages/networkx/classes/tests/__pycache__/test_multigraph.cpython-310.pyc
ADDED
|
Binary file (17.6 kB). View file
|
|
|
minigpt2/lib/python3.10/site-packages/networkx/classes/tests/dispatch_interface.py
ADDED
|
@@ -0,0 +1,185 @@
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|
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|
|
|
|
|
|
|
|
| 1 |
+
# This file contains utilities for testing the dispatching feature
|
| 2 |
+
|
| 3 |
+
# A full test of all dispatchable algorithms is performed by
|
| 4 |
+
# modifying the pytest invocation and setting an environment variable
|
| 5 |
+
# NETWORKX_TEST_BACKEND=nx_loopback pytest
|
| 6 |
+
# This is comprehensive, but only tests the `test_override_dispatch`
|
| 7 |
+
# function in networkx.classes.backends.
|
| 8 |
+
|
| 9 |
+
# To test the `_dispatchable` function directly, several tests scattered throughout
|
| 10 |
+
# NetworkX have been augmented to test normal and dispatch mode.
|
| 11 |
+
# Searching for `dispatch_interface` should locate the specific tests.
|
| 12 |
+
|
| 13 |
+
import networkx as nx
|
| 14 |
+
from networkx import DiGraph, Graph, MultiDiGraph, MultiGraph, PlanarEmbedding
|
| 15 |
+
from networkx.classes.reportviews import NodeView
|
| 16 |
+
|
| 17 |
+
|
| 18 |
+
class LoopbackGraph(Graph):
|
| 19 |
+
__networkx_backend__ = "nx_loopback"
|
| 20 |
+
|
| 21 |
+
|
| 22 |
+
class LoopbackDiGraph(DiGraph):
|
| 23 |
+
__networkx_backend__ = "nx_loopback"
|
| 24 |
+
|
| 25 |
+
|
| 26 |
+
class LoopbackMultiGraph(MultiGraph):
|
| 27 |
+
__networkx_backend__ = "nx_loopback"
|
| 28 |
+
|
| 29 |
+
|
| 30 |
+
class LoopbackMultiDiGraph(MultiDiGraph):
|
| 31 |
+
__networkx_backend__ = "nx_loopback"
|
| 32 |
+
|
| 33 |
+
|
| 34 |
+
class LoopbackPlanarEmbedding(PlanarEmbedding):
|
| 35 |
+
__networkx_backend__ = "nx_loopback"
|
| 36 |
+
|
| 37 |
+
|
| 38 |
+
def convert(graph):
|
| 39 |
+
if isinstance(graph, PlanarEmbedding):
|
| 40 |
+
return LoopbackPlanarEmbedding(graph)
|
| 41 |
+
if isinstance(graph, MultiDiGraph):
|
| 42 |
+
return LoopbackMultiDiGraph(graph)
|
| 43 |
+
if isinstance(graph, MultiGraph):
|
| 44 |
+
return LoopbackMultiGraph(graph)
|
| 45 |
+
if isinstance(graph, DiGraph):
|
| 46 |
+
return LoopbackDiGraph(graph)
|
| 47 |
+
if isinstance(graph, Graph):
|
| 48 |
+
return LoopbackGraph(graph)
|
| 49 |
+
raise TypeError(f"Unsupported type of graph: {type(graph)}")
|
| 50 |
+
|
| 51 |
+
|
| 52 |
+
class LoopbackBackendInterface:
|
| 53 |
+
def __getattr__(self, item):
|
| 54 |
+
try:
|
| 55 |
+
return nx.utils.backends._registered_algorithms[item].orig_func
|
| 56 |
+
except KeyError:
|
| 57 |
+
raise AttributeError(item) from None
|
| 58 |
+
|
| 59 |
+
@staticmethod
|
| 60 |
+
def convert_from_nx(
|
| 61 |
+
graph,
|
| 62 |
+
*,
|
| 63 |
+
edge_attrs=None,
|
| 64 |
+
node_attrs=None,
|
| 65 |
+
preserve_edge_attrs=None,
|
| 66 |
+
preserve_node_attrs=None,
|
| 67 |
+
preserve_graph_attrs=None,
|
| 68 |
+
name=None,
|
| 69 |
+
graph_name=None,
|
| 70 |
+
):
|
| 71 |
+
if name in {
|
| 72 |
+
# Raise if input graph changes. See test_dag.py::test_topological_sort6
|
| 73 |
+
"lexicographical_topological_sort",
|
| 74 |
+
"topological_generations",
|
| 75 |
+
"topological_sort",
|
| 76 |
+
# Would be nice to some day avoid these cutoffs of full testing
|
| 77 |
+
}:
|
| 78 |
+
return graph
|
| 79 |
+
if isinstance(graph, NodeView):
|
| 80 |
+
# Convert to a Graph with only nodes (no edges)
|
| 81 |
+
new_graph = Graph()
|
| 82 |
+
new_graph.add_nodes_from(graph.items())
|
| 83 |
+
graph = new_graph
|
| 84 |
+
G = LoopbackGraph()
|
| 85 |
+
elif not isinstance(graph, Graph):
|
| 86 |
+
raise TypeError(
|
| 87 |
+
f"Bad type for graph argument {graph_name} in {name}: {type(graph)}"
|
| 88 |
+
)
|
| 89 |
+
elif graph.__class__ in {Graph, LoopbackGraph}:
|
| 90 |
+
G = LoopbackGraph()
|
| 91 |
+
elif graph.__class__ in {DiGraph, LoopbackDiGraph}:
|
| 92 |
+
G = LoopbackDiGraph()
|
| 93 |
+
elif graph.__class__ in {MultiGraph, LoopbackMultiGraph}:
|
| 94 |
+
G = LoopbackMultiGraph()
|
| 95 |
+
elif graph.__class__ in {MultiDiGraph, LoopbackMultiDiGraph}:
|
| 96 |
+
G = LoopbackMultiDiGraph()
|
| 97 |
+
elif graph.__class__ in {PlanarEmbedding, LoopbackPlanarEmbedding}:
|
| 98 |
+
G = LoopbackDiGraph() # or LoopbackPlanarEmbedding
|
| 99 |
+
else:
|
| 100 |
+
# Would be nice to handle these better some day
|
| 101 |
+
# nx.algorithms.approximation.kcomponents._AntiGraph
|
| 102 |
+
# nx.classes.tests.test_multidigraph.MultiDiGraphSubClass
|
| 103 |
+
# nx.classes.tests.test_multigraph.MultiGraphSubClass
|
| 104 |
+
G = graph.__class__()
|
| 105 |
+
|
| 106 |
+
if preserve_graph_attrs:
|
| 107 |
+
G.graph.update(graph.graph)
|
| 108 |
+
|
| 109 |
+
# add nodes
|
| 110 |
+
G.add_nodes_from(graph)
|
| 111 |
+
if preserve_node_attrs:
|
| 112 |
+
for n, dd in G._node.items():
|
| 113 |
+
dd.update(graph.nodes[n])
|
| 114 |
+
elif node_attrs:
|
| 115 |
+
for n, dd in G._node.items():
|
| 116 |
+
dd.update(
|
| 117 |
+
(attr, graph._node[n].get(attr, default))
|
| 118 |
+
for attr, default in node_attrs.items()
|
| 119 |
+
if default is not None or attr in graph._node[n]
|
| 120 |
+
)
|
| 121 |
+
|
| 122 |
+
# tools to build datadict and keydict
|
| 123 |
+
if preserve_edge_attrs:
|
| 124 |
+
|
| 125 |
+
def G_new_datadict(old_dd):
|
| 126 |
+
return G.edge_attr_dict_factory(old_dd)
|
| 127 |
+
elif edge_attrs:
|
| 128 |
+
|
| 129 |
+
def G_new_datadict(old_dd):
|
| 130 |
+
return G.edge_attr_dict_factory(
|
| 131 |
+
(attr, old_dd.get(attr, default))
|
| 132 |
+
for attr, default in edge_attrs.items()
|
| 133 |
+
if default is not None or attr in old_dd
|
| 134 |
+
)
|
| 135 |
+
else:
|
| 136 |
+
|
| 137 |
+
def G_new_datadict(old_dd):
|
| 138 |
+
return G.edge_attr_dict_factory()
|
| 139 |
+
|
| 140 |
+
if G.is_multigraph():
|
| 141 |
+
|
| 142 |
+
def G_new_inner(keydict):
|
| 143 |
+
kd = G.adjlist_inner_dict_factory(
|
| 144 |
+
(k, G_new_datadict(dd)) for k, dd in keydict.items()
|
| 145 |
+
)
|
| 146 |
+
return kd
|
| 147 |
+
else:
|
| 148 |
+
G_new_inner = G_new_datadict
|
| 149 |
+
|
| 150 |
+
# add edges keeping the same order in _adj and _pred
|
| 151 |
+
G_adj = G._adj
|
| 152 |
+
if G.is_directed():
|
| 153 |
+
for n, nbrs in graph._adj.items():
|
| 154 |
+
G_adj[n].update((nbr, G_new_inner(dd)) for nbr, dd in nbrs.items())
|
| 155 |
+
# ensure same datadict for pred and adj; and pred order of graph._pred
|
| 156 |
+
G_pred = G._pred
|
| 157 |
+
for n, nbrs in graph._pred.items():
|
| 158 |
+
G_pred[n].update((nbr, G_adj[nbr][n]) for nbr in nbrs)
|
| 159 |
+
else: # undirected
|
| 160 |
+
for n, nbrs in graph._adj.items():
|
| 161 |
+
# ensure same datadict for both ways; and adj order of graph._adj
|
| 162 |
+
G_adj[n].update(
|
| 163 |
+
(nbr, G_adj[nbr][n] if n in G_adj[nbr] else G_new_inner(dd))
|
| 164 |
+
for nbr, dd in nbrs.items()
|
| 165 |
+
)
|
| 166 |
+
|
| 167 |
+
return G
|
| 168 |
+
|
| 169 |
+
@staticmethod
|
| 170 |
+
def convert_to_nx(obj, *, name=None):
|
| 171 |
+
return obj
|
| 172 |
+
|
| 173 |
+
@staticmethod
|
| 174 |
+
def on_start_tests(items):
|
| 175 |
+
# Verify that items can be xfailed
|
| 176 |
+
for item in items:
|
| 177 |
+
assert hasattr(item, "add_marker")
|
| 178 |
+
|
| 179 |
+
def can_run(self, name, args, kwargs):
|
| 180 |
+
# It is unnecessary to define this function if algorithms are fully supported.
|
| 181 |
+
# We include it for illustration purposes.
|
| 182 |
+
return hasattr(self, name)
|
| 183 |
+
|
| 184 |
+
|
| 185 |
+
backend_interface = LoopbackBackendInterface()
|
minigpt2/lib/python3.10/site-packages/networkx/classes/tests/historical_tests.py
ADDED
|
@@ -0,0 +1,475 @@
|
|
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|
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|
| 1 |
+
"""Original NetworkX graph tests"""
|
| 2 |
+
|
| 3 |
+
import pytest
|
| 4 |
+
|
| 5 |
+
import networkx as nx
|
| 6 |
+
from networkx import convert_node_labels_to_integers as cnlti
|
| 7 |
+
from networkx.utils import edges_equal, nodes_equal
|
| 8 |
+
|
| 9 |
+
|
| 10 |
+
class HistoricalTests:
|
| 11 |
+
@classmethod
|
| 12 |
+
def setup_class(cls):
|
| 13 |
+
cls.null = nx.null_graph()
|
| 14 |
+
cls.P1 = cnlti(nx.path_graph(1), first_label=1)
|
| 15 |
+
cls.P3 = cnlti(nx.path_graph(3), first_label=1)
|
| 16 |
+
cls.P10 = cnlti(nx.path_graph(10), first_label=1)
|
| 17 |
+
cls.K1 = cnlti(nx.complete_graph(1), first_label=1)
|
| 18 |
+
cls.K3 = cnlti(nx.complete_graph(3), first_label=1)
|
| 19 |
+
cls.K4 = cnlti(nx.complete_graph(4), first_label=1)
|
| 20 |
+
cls.K5 = cnlti(nx.complete_graph(5), first_label=1)
|
| 21 |
+
cls.K10 = cnlti(nx.complete_graph(10), first_label=1)
|
| 22 |
+
cls.G = nx.Graph
|
| 23 |
+
|
| 24 |
+
def test_name(self):
|
| 25 |
+
G = self.G(name="test")
|
| 26 |
+
assert G.name == "test"
|
| 27 |
+
H = self.G()
|
| 28 |
+
assert H.name == ""
|
| 29 |
+
|
| 30 |
+
# Nodes
|
| 31 |
+
|
| 32 |
+
def test_add_remove_node(self):
|
| 33 |
+
G = self.G()
|
| 34 |
+
G.add_node("A")
|
| 35 |
+
assert G.has_node("A")
|
| 36 |
+
G.remove_node("A")
|
| 37 |
+
assert not G.has_node("A")
|
| 38 |
+
|
| 39 |
+
def test_nonhashable_node(self):
|
| 40 |
+
# Test if a non-hashable object is in the Graph. A python dict will
|
| 41 |
+
# raise a TypeError, but for a Graph class a simple False should be
|
| 42 |
+
# returned (see Graph __contains__). If it cannot be a node then it is
|
| 43 |
+
# not a node.
|
| 44 |
+
G = self.G()
|
| 45 |
+
assert not G.has_node(["A"])
|
| 46 |
+
assert not G.has_node({"A": 1})
|
| 47 |
+
|
| 48 |
+
def test_add_nodes_from(self):
|
| 49 |
+
G = self.G()
|
| 50 |
+
G.add_nodes_from(list("ABCDEFGHIJKL"))
|
| 51 |
+
assert G.has_node("L")
|
| 52 |
+
G.remove_nodes_from(["H", "I", "J", "K", "L"])
|
| 53 |
+
G.add_nodes_from([1, 2, 3, 4])
|
| 54 |
+
assert sorted(G.nodes(), key=str) == [
|
| 55 |
+
1,
|
| 56 |
+
2,
|
| 57 |
+
3,
|
| 58 |
+
4,
|
| 59 |
+
"A",
|
| 60 |
+
"B",
|
| 61 |
+
"C",
|
| 62 |
+
"D",
|
| 63 |
+
"E",
|
| 64 |
+
"F",
|
| 65 |
+
"G",
|
| 66 |
+
]
|
| 67 |
+
# test __iter__
|
| 68 |
+
assert sorted(G, key=str) == [1, 2, 3, 4, "A", "B", "C", "D", "E", "F", "G"]
|
| 69 |
+
|
| 70 |
+
def test_contains(self):
|
| 71 |
+
G = self.G()
|
| 72 |
+
G.add_node("A")
|
| 73 |
+
assert "A" in G
|
| 74 |
+
assert [] not in G # never raise a Key or TypeError in this test
|
| 75 |
+
assert {1: 1} not in G
|
| 76 |
+
|
| 77 |
+
def test_add_remove(self):
|
| 78 |
+
# Test add_node and remove_node acting for various nbunch
|
| 79 |
+
G = self.G()
|
| 80 |
+
G.add_node("m")
|
| 81 |
+
assert G.has_node("m")
|
| 82 |
+
G.add_node("m") # no complaints
|
| 83 |
+
pytest.raises(nx.NetworkXError, G.remove_node, "j")
|
| 84 |
+
G.remove_node("m")
|
| 85 |
+
assert list(G) == []
|
| 86 |
+
|
| 87 |
+
def test_nbunch_is_list(self):
|
| 88 |
+
G = self.G()
|
| 89 |
+
G.add_nodes_from(list("ABCD"))
|
| 90 |
+
G.add_nodes_from(self.P3) # add nbunch of nodes (nbunch=Graph)
|
| 91 |
+
assert sorted(G.nodes(), key=str) == [1, 2, 3, "A", "B", "C", "D"]
|
| 92 |
+
G.remove_nodes_from(self.P3) # remove nbunch of nodes (nbunch=Graph)
|
| 93 |
+
assert sorted(G.nodes(), key=str) == ["A", "B", "C", "D"]
|
| 94 |
+
|
| 95 |
+
def test_nbunch_is_set(self):
|
| 96 |
+
G = self.G()
|
| 97 |
+
nbunch = set("ABCDEFGHIJKL")
|
| 98 |
+
G.add_nodes_from(nbunch)
|
| 99 |
+
assert G.has_node("L")
|
| 100 |
+
|
| 101 |
+
def test_nbunch_dict(self):
|
| 102 |
+
# nbunch is a dict with nodes as keys
|
| 103 |
+
G = self.G()
|
| 104 |
+
nbunch = set("ABCDEFGHIJKL")
|
| 105 |
+
G.add_nodes_from(nbunch)
|
| 106 |
+
nbunch = {"I": "foo", "J": 2, "K": True, "L": "spam"}
|
| 107 |
+
G.remove_nodes_from(nbunch)
|
| 108 |
+
assert sorted(G.nodes(), key=str), ["A", "B", "C", "D", "E", "F", "G", "H"]
|
| 109 |
+
|
| 110 |
+
def test_nbunch_iterator(self):
|
| 111 |
+
G = self.G()
|
| 112 |
+
G.add_nodes_from(["A", "B", "C", "D", "E", "F", "G", "H"])
|
| 113 |
+
n_iter = self.P3.nodes()
|
| 114 |
+
G.add_nodes_from(n_iter)
|
| 115 |
+
assert sorted(G.nodes(), key=str) == [
|
| 116 |
+
1,
|
| 117 |
+
2,
|
| 118 |
+
3,
|
| 119 |
+
"A",
|
| 120 |
+
"B",
|
| 121 |
+
"C",
|
| 122 |
+
"D",
|
| 123 |
+
"E",
|
| 124 |
+
"F",
|
| 125 |
+
"G",
|
| 126 |
+
"H",
|
| 127 |
+
]
|
| 128 |
+
n_iter = self.P3.nodes() # rebuild same iterator
|
| 129 |
+
G.remove_nodes_from(n_iter) # remove nbunch of nodes (nbunch=iterator)
|
| 130 |
+
assert sorted(G.nodes(), key=str) == ["A", "B", "C", "D", "E", "F", "G", "H"]
|
| 131 |
+
|
| 132 |
+
def test_nbunch_graph(self):
|
| 133 |
+
G = self.G()
|
| 134 |
+
G.add_nodes_from(["A", "B", "C", "D", "E", "F", "G", "H"])
|
| 135 |
+
nbunch = self.K3
|
| 136 |
+
G.add_nodes_from(nbunch)
|
| 137 |
+
assert sorted(G.nodes(), key=str), [
|
| 138 |
+
1,
|
| 139 |
+
2,
|
| 140 |
+
3,
|
| 141 |
+
"A",
|
| 142 |
+
"B",
|
| 143 |
+
"C",
|
| 144 |
+
"D",
|
| 145 |
+
"E",
|
| 146 |
+
"F",
|
| 147 |
+
"G",
|
| 148 |
+
"H",
|
| 149 |
+
]
|
| 150 |
+
|
| 151 |
+
# Edges
|
| 152 |
+
|
| 153 |
+
def test_add_edge(self):
|
| 154 |
+
G = self.G()
|
| 155 |
+
pytest.raises(TypeError, G.add_edge, "A")
|
| 156 |
+
|
| 157 |
+
G.add_edge("A", "B") # testing add_edge()
|
| 158 |
+
G.add_edge("A", "B") # should fail silently
|
| 159 |
+
assert G.has_edge("A", "B")
|
| 160 |
+
assert not G.has_edge("A", "C")
|
| 161 |
+
assert G.has_edge(*("A", "B"))
|
| 162 |
+
if G.is_directed():
|
| 163 |
+
assert not G.has_edge("B", "A")
|
| 164 |
+
else:
|
| 165 |
+
# G is undirected, so B->A is an edge
|
| 166 |
+
assert G.has_edge("B", "A")
|
| 167 |
+
|
| 168 |
+
G.add_edge("A", "C") # test directedness
|
| 169 |
+
G.add_edge("C", "A")
|
| 170 |
+
G.remove_edge("C", "A")
|
| 171 |
+
if G.is_directed():
|
| 172 |
+
assert G.has_edge("A", "C")
|
| 173 |
+
else:
|
| 174 |
+
assert not G.has_edge("A", "C")
|
| 175 |
+
assert not G.has_edge("C", "A")
|
| 176 |
+
|
| 177 |
+
def test_self_loop(self):
|
| 178 |
+
G = self.G()
|
| 179 |
+
G.add_edge("A", "A") # test self loops
|
| 180 |
+
assert G.has_edge("A", "A")
|
| 181 |
+
G.remove_edge("A", "A")
|
| 182 |
+
G.add_edge("X", "X")
|
| 183 |
+
assert G.has_node("X")
|
| 184 |
+
G.remove_node("X")
|
| 185 |
+
G.add_edge("A", "Z") # should add the node silently
|
| 186 |
+
assert G.has_node("Z")
|
| 187 |
+
|
| 188 |
+
def test_add_edges_from(self):
|
| 189 |
+
G = self.G()
|
| 190 |
+
G.add_edges_from([("B", "C")]) # test add_edges_from()
|
| 191 |
+
assert G.has_edge("B", "C")
|
| 192 |
+
if G.is_directed():
|
| 193 |
+
assert not G.has_edge("C", "B")
|
| 194 |
+
else:
|
| 195 |
+
assert G.has_edge("C", "B") # undirected
|
| 196 |
+
|
| 197 |
+
G.add_edges_from([("D", "F"), ("B", "D")])
|
| 198 |
+
assert G.has_edge("D", "F")
|
| 199 |
+
assert G.has_edge("B", "D")
|
| 200 |
+
|
| 201 |
+
if G.is_directed():
|
| 202 |
+
assert not G.has_edge("D", "B")
|
| 203 |
+
else:
|
| 204 |
+
assert G.has_edge("D", "B") # undirected
|
| 205 |
+
|
| 206 |
+
def test_add_edges_from2(self):
|
| 207 |
+
G = self.G()
|
| 208 |
+
# after failing silently, should add 2nd edge
|
| 209 |
+
G.add_edges_from([tuple("IJ"), list("KK"), tuple("JK")])
|
| 210 |
+
assert G.has_edge(*("I", "J"))
|
| 211 |
+
assert G.has_edge(*("K", "K"))
|
| 212 |
+
assert G.has_edge(*("J", "K"))
|
| 213 |
+
if G.is_directed():
|
| 214 |
+
assert not G.has_edge(*("K", "J"))
|
| 215 |
+
else:
|
| 216 |
+
assert G.has_edge(*("K", "J"))
|
| 217 |
+
|
| 218 |
+
def test_add_edges_from3(self):
|
| 219 |
+
G = self.G()
|
| 220 |
+
G.add_edges_from(zip(list("ACD"), list("CDE")))
|
| 221 |
+
assert G.has_edge("D", "E")
|
| 222 |
+
assert not G.has_edge("E", "C")
|
| 223 |
+
|
| 224 |
+
def test_remove_edge(self):
|
| 225 |
+
G = self.G()
|
| 226 |
+
G.add_nodes_from([1, 2, 3, "A", "B", "C", "D", "E", "F", "G", "H"])
|
| 227 |
+
|
| 228 |
+
G.add_edges_from(zip(list("MNOP"), list("NOPM")))
|
| 229 |
+
assert G.has_edge("O", "P")
|
| 230 |
+
assert G.has_edge("P", "M")
|
| 231 |
+
G.remove_node("P") # tests remove_node()'s handling of edges.
|
| 232 |
+
assert not G.has_edge("P", "M")
|
| 233 |
+
pytest.raises(TypeError, G.remove_edge, "M")
|
| 234 |
+
|
| 235 |
+
G.add_edge("N", "M")
|
| 236 |
+
assert G.has_edge("M", "N")
|
| 237 |
+
G.remove_edge("M", "N")
|
| 238 |
+
assert not G.has_edge("M", "N")
|
| 239 |
+
|
| 240 |
+
# self loop fails silently
|
| 241 |
+
G.remove_edges_from([list("HI"), list("DF"), tuple("KK"), tuple("JK")])
|
| 242 |
+
assert not G.has_edge("H", "I")
|
| 243 |
+
assert not G.has_edge("J", "K")
|
| 244 |
+
G.remove_edges_from([list("IJ"), list("KK"), list("JK")])
|
| 245 |
+
assert not G.has_edge("I", "J")
|
| 246 |
+
G.remove_nodes_from(set("ZEFHIMNO"))
|
| 247 |
+
G.add_edge("J", "K")
|
| 248 |
+
|
| 249 |
+
def test_edges_nbunch(self):
|
| 250 |
+
# Test G.edges(nbunch) with various forms of nbunch
|
| 251 |
+
G = self.G()
|
| 252 |
+
G.add_edges_from([("A", "B"), ("A", "C"), ("B", "D"), ("C", "B"), ("C", "D")])
|
| 253 |
+
# node not in nbunch should be quietly ignored
|
| 254 |
+
pytest.raises(nx.NetworkXError, G.edges, 6)
|
| 255 |
+
assert list(G.edges("Z")) == [] # iterable non-node
|
| 256 |
+
# nbunch can be an empty list
|
| 257 |
+
assert list(G.edges([])) == []
|
| 258 |
+
if G.is_directed():
|
| 259 |
+
elist = [("A", "B"), ("A", "C"), ("B", "D")]
|
| 260 |
+
else:
|
| 261 |
+
elist = [("A", "B"), ("A", "C"), ("B", "C"), ("B", "D")]
|
| 262 |
+
# nbunch can be a list
|
| 263 |
+
assert edges_equal(list(G.edges(["A", "B"])), elist)
|
| 264 |
+
# nbunch can be a set
|
| 265 |
+
assert edges_equal(G.edges({"A", "B"}), elist)
|
| 266 |
+
# nbunch can be a graph
|
| 267 |
+
G1 = self.G()
|
| 268 |
+
G1.add_nodes_from("AB")
|
| 269 |
+
assert edges_equal(G.edges(G1), elist)
|
| 270 |
+
# nbunch can be a dict with nodes as keys
|
| 271 |
+
ndict = {"A": "thing1", "B": "thing2"}
|
| 272 |
+
assert edges_equal(G.edges(ndict), elist)
|
| 273 |
+
# nbunch can be a single node
|
| 274 |
+
assert edges_equal(list(G.edges("A")), [("A", "B"), ("A", "C")])
|
| 275 |
+
assert nodes_equal(sorted(G), ["A", "B", "C", "D"])
|
| 276 |
+
|
| 277 |
+
# nbunch can be nothing (whole graph)
|
| 278 |
+
assert edges_equal(
|
| 279 |
+
list(G.edges()),
|
| 280 |
+
[("A", "B"), ("A", "C"), ("B", "D"), ("C", "B"), ("C", "D")],
|
| 281 |
+
)
|
| 282 |
+
|
| 283 |
+
def test_degree(self):
|
| 284 |
+
G = self.G()
|
| 285 |
+
G.add_edges_from([("A", "B"), ("A", "C"), ("B", "D"), ("C", "B"), ("C", "D")])
|
| 286 |
+
assert G.degree("A") == 2
|
| 287 |
+
|
| 288 |
+
# degree of single node in iterable container must return dict
|
| 289 |
+
assert list(G.degree(["A"])) == [("A", 2)]
|
| 290 |
+
assert sorted(d for n, d in G.degree(["A", "B"])) == [2, 3]
|
| 291 |
+
assert sorted(d for n, d in G.degree()) == [2, 2, 3, 3]
|
| 292 |
+
|
| 293 |
+
def test_degree2(self):
|
| 294 |
+
H = self.G()
|
| 295 |
+
H.add_edges_from([(1, 24), (1, 2)])
|
| 296 |
+
assert sorted(d for n, d in H.degree([1, 24])) == [1, 2]
|
| 297 |
+
|
| 298 |
+
def test_degree_graph(self):
|
| 299 |
+
P3 = nx.path_graph(3)
|
| 300 |
+
P5 = nx.path_graph(5)
|
| 301 |
+
# silently ignore nodes not in P3
|
| 302 |
+
assert dict(d for n, d in P3.degree(["A", "B"])) == {}
|
| 303 |
+
# nbunch can be a graph
|
| 304 |
+
assert sorted(d for n, d in P5.degree(P3)) == [1, 2, 2]
|
| 305 |
+
# nbunch can be a graph that's way too big
|
| 306 |
+
assert sorted(d for n, d in P3.degree(P5)) == [1, 1, 2]
|
| 307 |
+
assert list(P5.degree([])) == []
|
| 308 |
+
assert dict(P5.degree([])) == {}
|
| 309 |
+
|
| 310 |
+
def test_null(self):
|
| 311 |
+
null = nx.null_graph()
|
| 312 |
+
assert list(null.degree()) == []
|
| 313 |
+
assert dict(null.degree()) == {}
|
| 314 |
+
|
| 315 |
+
def test_order_size(self):
|
| 316 |
+
G = self.G()
|
| 317 |
+
G.add_edges_from([("A", "B"), ("A", "C"), ("B", "D"), ("C", "B"), ("C", "D")])
|
| 318 |
+
assert G.order() == 4
|
| 319 |
+
assert G.size() == 5
|
| 320 |
+
assert G.number_of_edges() == 5
|
| 321 |
+
assert G.number_of_edges("A", "B") == 1
|
| 322 |
+
assert G.number_of_edges("A", "D") == 0
|
| 323 |
+
|
| 324 |
+
def test_copy(self):
|
| 325 |
+
G = self.G()
|
| 326 |
+
H = G.copy() # copy
|
| 327 |
+
assert H.adj == G.adj
|
| 328 |
+
assert H.name == G.name
|
| 329 |
+
assert H is not G
|
| 330 |
+
|
| 331 |
+
def test_subgraph(self):
|
| 332 |
+
G = self.G()
|
| 333 |
+
G.add_edges_from([("A", "B"), ("A", "C"), ("B", "D"), ("C", "B"), ("C", "D")])
|
| 334 |
+
SG = G.subgraph(["A", "B", "D"])
|
| 335 |
+
assert nodes_equal(list(SG), ["A", "B", "D"])
|
| 336 |
+
assert edges_equal(list(SG.edges()), [("A", "B"), ("B", "D")])
|
| 337 |
+
|
| 338 |
+
def test_to_directed(self):
|
| 339 |
+
G = self.G()
|
| 340 |
+
if not G.is_directed():
|
| 341 |
+
G.add_edges_from(
|
| 342 |
+
[("A", "B"), ("A", "C"), ("B", "D"), ("C", "B"), ("C", "D")]
|
| 343 |
+
)
|
| 344 |
+
|
| 345 |
+
DG = G.to_directed()
|
| 346 |
+
assert DG is not G # directed copy or copy
|
| 347 |
+
|
| 348 |
+
assert DG.is_directed()
|
| 349 |
+
assert DG.name == G.name
|
| 350 |
+
assert DG.adj == G.adj
|
| 351 |
+
assert sorted(DG.out_edges(list("AB"))) == [
|
| 352 |
+
("A", "B"),
|
| 353 |
+
("A", "C"),
|
| 354 |
+
("B", "A"),
|
| 355 |
+
("B", "C"),
|
| 356 |
+
("B", "D"),
|
| 357 |
+
]
|
| 358 |
+
DG.remove_edge("A", "B")
|
| 359 |
+
assert DG.has_edge("B", "A") # this removes B-A but not A-B
|
| 360 |
+
assert not DG.has_edge("A", "B")
|
| 361 |
+
|
| 362 |
+
def test_to_undirected(self):
|
| 363 |
+
G = self.G()
|
| 364 |
+
if G.is_directed():
|
| 365 |
+
G.add_edges_from(
|
| 366 |
+
[("A", "B"), ("A", "C"), ("B", "D"), ("C", "B"), ("C", "D")]
|
| 367 |
+
)
|
| 368 |
+
UG = G.to_undirected() # to_undirected
|
| 369 |
+
assert UG is not G
|
| 370 |
+
assert not UG.is_directed()
|
| 371 |
+
assert G.is_directed()
|
| 372 |
+
assert UG.name == G.name
|
| 373 |
+
assert UG.adj != G.adj
|
| 374 |
+
assert sorted(UG.edges(list("AB"))) == [
|
| 375 |
+
("A", "B"),
|
| 376 |
+
("A", "C"),
|
| 377 |
+
("B", "C"),
|
| 378 |
+
("B", "D"),
|
| 379 |
+
]
|
| 380 |
+
assert sorted(UG.edges(["A", "B"])) == [
|
| 381 |
+
("A", "B"),
|
| 382 |
+
("A", "C"),
|
| 383 |
+
("B", "C"),
|
| 384 |
+
("B", "D"),
|
| 385 |
+
]
|
| 386 |
+
UG.remove_edge("A", "B")
|
| 387 |
+
assert not UG.has_edge("B", "A")
|
| 388 |
+
assert not UG.has_edge("A", "B")
|
| 389 |
+
|
| 390 |
+
def test_neighbors(self):
|
| 391 |
+
G = self.G()
|
| 392 |
+
G.add_edges_from([("A", "B"), ("A", "C"), ("B", "D"), ("C", "B"), ("C", "D")])
|
| 393 |
+
G.add_nodes_from("GJK")
|
| 394 |
+
assert sorted(G["A"]) == ["B", "C"]
|
| 395 |
+
assert sorted(G.neighbors("A")) == ["B", "C"]
|
| 396 |
+
assert sorted(G.neighbors("A")) == ["B", "C"]
|
| 397 |
+
assert sorted(G.neighbors("G")) == []
|
| 398 |
+
pytest.raises(nx.NetworkXError, G.neighbors, "j")
|
| 399 |
+
|
| 400 |
+
def test_iterators(self):
|
| 401 |
+
G = self.G()
|
| 402 |
+
G.add_edges_from([("A", "B"), ("A", "C"), ("B", "D"), ("C", "B"), ("C", "D")])
|
| 403 |
+
G.add_nodes_from("GJK")
|
| 404 |
+
assert sorted(G.nodes()) == ["A", "B", "C", "D", "G", "J", "K"]
|
| 405 |
+
assert edges_equal(
|
| 406 |
+
G.edges(), [("A", "B"), ("A", "C"), ("B", "D"), ("C", "B"), ("C", "D")]
|
| 407 |
+
)
|
| 408 |
+
|
| 409 |
+
assert sorted(v for k, v in G.degree()) == [0, 0, 0, 2, 2, 3, 3]
|
| 410 |
+
assert sorted(G.degree(), key=str) == [
|
| 411 |
+
("A", 2),
|
| 412 |
+
("B", 3),
|
| 413 |
+
("C", 3),
|
| 414 |
+
("D", 2),
|
| 415 |
+
("G", 0),
|
| 416 |
+
("J", 0),
|
| 417 |
+
("K", 0),
|
| 418 |
+
]
|
| 419 |
+
assert sorted(G.neighbors("A")) == ["B", "C"]
|
| 420 |
+
pytest.raises(nx.NetworkXError, G.neighbors, "X")
|
| 421 |
+
G.clear()
|
| 422 |
+
assert nx.number_of_nodes(G) == 0
|
| 423 |
+
assert nx.number_of_edges(G) == 0
|
| 424 |
+
|
| 425 |
+
def test_null_subgraph(self):
|
| 426 |
+
# Subgraph of a null graph is a null graph
|
| 427 |
+
nullgraph = nx.null_graph()
|
| 428 |
+
G = nx.null_graph()
|
| 429 |
+
H = G.subgraph([])
|
| 430 |
+
assert nx.is_isomorphic(H, nullgraph)
|
| 431 |
+
|
| 432 |
+
def test_empty_subgraph(self):
|
| 433 |
+
# Subgraph of an empty graph is an empty graph. test 1
|
| 434 |
+
nullgraph = nx.null_graph()
|
| 435 |
+
E5 = nx.empty_graph(5)
|
| 436 |
+
E10 = nx.empty_graph(10)
|
| 437 |
+
H = E10.subgraph([])
|
| 438 |
+
assert nx.is_isomorphic(H, nullgraph)
|
| 439 |
+
H = E10.subgraph([1, 2, 3, 4, 5])
|
| 440 |
+
assert nx.is_isomorphic(H, E5)
|
| 441 |
+
|
| 442 |
+
def test_complete_subgraph(self):
|
| 443 |
+
# Subgraph of a complete graph is a complete graph
|
| 444 |
+
K1 = nx.complete_graph(1)
|
| 445 |
+
K3 = nx.complete_graph(3)
|
| 446 |
+
K5 = nx.complete_graph(5)
|
| 447 |
+
H = K5.subgraph([1, 2, 3])
|
| 448 |
+
assert nx.is_isomorphic(H, K3)
|
| 449 |
+
|
| 450 |
+
def test_subgraph_nbunch(self):
|
| 451 |
+
nullgraph = nx.null_graph()
|
| 452 |
+
K1 = nx.complete_graph(1)
|
| 453 |
+
K3 = nx.complete_graph(3)
|
| 454 |
+
K5 = nx.complete_graph(5)
|
| 455 |
+
# Test G.subgraph(nbunch), where nbunch is a single node
|
| 456 |
+
H = K5.subgraph(1)
|
| 457 |
+
assert nx.is_isomorphic(H, K1)
|
| 458 |
+
# Test G.subgraph(nbunch), where nbunch is a set
|
| 459 |
+
H = K5.subgraph({1})
|
| 460 |
+
assert nx.is_isomorphic(H, K1)
|
| 461 |
+
# Test G.subgraph(nbunch), where nbunch is an iterator
|
| 462 |
+
H = K5.subgraph(iter(K3))
|
| 463 |
+
assert nx.is_isomorphic(H, K3)
|
| 464 |
+
# Test G.subgraph(nbunch), where nbunch is another graph
|
| 465 |
+
H = K5.subgraph(K3)
|
| 466 |
+
assert nx.is_isomorphic(H, K3)
|
| 467 |
+
H = K5.subgraph([9])
|
| 468 |
+
assert nx.is_isomorphic(H, nullgraph)
|
| 469 |
+
|
| 470 |
+
def test_node_tuple_issue(self):
|
| 471 |
+
H = self.G()
|
| 472 |
+
# Test error handling of tuple as a node
|
| 473 |
+
pytest.raises(nx.NetworkXError, H.remove_node, (1, 2))
|
| 474 |
+
H.remove_nodes_from([(1, 2)]) # no error
|
| 475 |
+
pytest.raises(nx.NetworkXError, H.neighbors, (1, 2))
|
minigpt2/lib/python3.10/site-packages/networkx/classes/tests/test_digraph.py
ADDED
|
@@ -0,0 +1,331 @@
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|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
from networkx.utils import nodes_equal
|
| 5 |
+
|
| 6 |
+
from .test_graph import BaseAttrGraphTester, BaseGraphTester
|
| 7 |
+
from .test_graph import TestEdgeSubgraph as _TestGraphEdgeSubgraph
|
| 8 |
+
from .test_graph import TestGraph as _TestGraph
|
| 9 |
+
|
| 10 |
+
|
| 11 |
+
class BaseDiGraphTester(BaseGraphTester):
|
| 12 |
+
def test_has_successor(self):
|
| 13 |
+
G = self.K3
|
| 14 |
+
assert G.has_successor(0, 1)
|
| 15 |
+
assert not G.has_successor(0, -1)
|
| 16 |
+
|
| 17 |
+
def test_successors(self):
|
| 18 |
+
G = self.K3
|
| 19 |
+
assert sorted(G.successors(0)) == [1, 2]
|
| 20 |
+
with pytest.raises(nx.NetworkXError):
|
| 21 |
+
G.successors(-1)
|
| 22 |
+
|
| 23 |
+
def test_has_predecessor(self):
|
| 24 |
+
G = self.K3
|
| 25 |
+
assert G.has_predecessor(0, 1)
|
| 26 |
+
assert not G.has_predecessor(0, -1)
|
| 27 |
+
|
| 28 |
+
def test_predecessors(self):
|
| 29 |
+
G = self.K3
|
| 30 |
+
assert sorted(G.predecessors(0)) == [1, 2]
|
| 31 |
+
with pytest.raises(nx.NetworkXError):
|
| 32 |
+
G.predecessors(-1)
|
| 33 |
+
|
| 34 |
+
def test_edges(self):
|
| 35 |
+
G = self.K3
|
| 36 |
+
assert sorted(G.edges()) == [(0, 1), (0, 2), (1, 0), (1, 2), (2, 0), (2, 1)]
|
| 37 |
+
assert sorted(G.edges(0)) == [(0, 1), (0, 2)]
|
| 38 |
+
assert sorted(G.edges([0, 1])) == [(0, 1), (0, 2), (1, 0), (1, 2)]
|
| 39 |
+
with pytest.raises(nx.NetworkXError):
|
| 40 |
+
G.edges(-1)
|
| 41 |
+
|
| 42 |
+
def test_out_edges(self):
|
| 43 |
+
G = self.K3
|
| 44 |
+
assert sorted(G.out_edges()) == [(0, 1), (0, 2), (1, 0), (1, 2), (2, 0), (2, 1)]
|
| 45 |
+
assert sorted(G.out_edges(0)) == [(0, 1), (0, 2)]
|
| 46 |
+
with pytest.raises(nx.NetworkXError):
|
| 47 |
+
G.out_edges(-1)
|
| 48 |
+
|
| 49 |
+
def test_out_edges_dir(self):
|
| 50 |
+
G = self.P3
|
| 51 |
+
assert sorted(G.out_edges()) == [(0, 1), (1, 2)]
|
| 52 |
+
assert sorted(G.out_edges(0)) == [(0, 1)]
|
| 53 |
+
assert sorted(G.out_edges(2)) == []
|
| 54 |
+
|
| 55 |
+
def test_out_edges_data(self):
|
| 56 |
+
G = nx.DiGraph([(0, 1, {"data": 0}), (1, 0, {})])
|
| 57 |
+
assert sorted(G.out_edges(data=True)) == [(0, 1, {"data": 0}), (1, 0, {})]
|
| 58 |
+
assert sorted(G.out_edges(0, data=True)) == [(0, 1, {"data": 0})]
|
| 59 |
+
assert sorted(G.out_edges(data="data")) == [(0, 1, 0), (1, 0, None)]
|
| 60 |
+
assert sorted(G.out_edges(0, data="data")) == [(0, 1, 0)]
|
| 61 |
+
|
| 62 |
+
def test_in_edges_dir(self):
|
| 63 |
+
G = self.P3
|
| 64 |
+
assert sorted(G.in_edges()) == [(0, 1), (1, 2)]
|
| 65 |
+
assert sorted(G.in_edges(0)) == []
|
| 66 |
+
assert sorted(G.in_edges(2)) == [(1, 2)]
|
| 67 |
+
|
| 68 |
+
def test_in_edges_data(self):
|
| 69 |
+
G = nx.DiGraph([(0, 1, {"data": 0}), (1, 0, {})])
|
| 70 |
+
assert sorted(G.in_edges(data=True)) == [(0, 1, {"data": 0}), (1, 0, {})]
|
| 71 |
+
assert sorted(G.in_edges(1, data=True)) == [(0, 1, {"data": 0})]
|
| 72 |
+
assert sorted(G.in_edges(data="data")) == [(0, 1, 0), (1, 0, None)]
|
| 73 |
+
assert sorted(G.in_edges(1, data="data")) == [(0, 1, 0)]
|
| 74 |
+
|
| 75 |
+
def test_degree(self):
|
| 76 |
+
G = self.K3
|
| 77 |
+
assert sorted(G.degree()) == [(0, 4), (1, 4), (2, 4)]
|
| 78 |
+
assert dict(G.degree()) == {0: 4, 1: 4, 2: 4}
|
| 79 |
+
assert G.degree(0) == 4
|
| 80 |
+
assert list(G.degree(iter([0]))) == [(0, 4)] # run through iterator
|
| 81 |
+
|
| 82 |
+
def test_in_degree(self):
|
| 83 |
+
G = self.K3
|
| 84 |
+
assert sorted(G.in_degree()) == [(0, 2), (1, 2), (2, 2)]
|
| 85 |
+
assert dict(G.in_degree()) == {0: 2, 1: 2, 2: 2}
|
| 86 |
+
assert G.in_degree(0) == 2
|
| 87 |
+
assert list(G.in_degree(iter([0]))) == [(0, 2)] # run through iterator
|
| 88 |
+
|
| 89 |
+
def test_out_degree(self):
|
| 90 |
+
G = self.K3
|
| 91 |
+
assert sorted(G.out_degree()) == [(0, 2), (1, 2), (2, 2)]
|
| 92 |
+
assert dict(G.out_degree()) == {0: 2, 1: 2, 2: 2}
|
| 93 |
+
assert G.out_degree(0) == 2
|
| 94 |
+
assert list(G.out_degree(iter([0]))) == [(0, 2)]
|
| 95 |
+
|
| 96 |
+
def test_size(self):
|
| 97 |
+
G = self.K3
|
| 98 |
+
assert G.size() == 6
|
| 99 |
+
assert G.number_of_edges() == 6
|
| 100 |
+
|
| 101 |
+
def test_to_undirected_reciprocal(self):
|
| 102 |
+
G = self.Graph()
|
| 103 |
+
G.add_edge(1, 2)
|
| 104 |
+
assert G.to_undirected().has_edge(1, 2)
|
| 105 |
+
assert not G.to_undirected(reciprocal=True).has_edge(1, 2)
|
| 106 |
+
G.add_edge(2, 1)
|
| 107 |
+
assert G.to_undirected(reciprocal=True).has_edge(1, 2)
|
| 108 |
+
|
| 109 |
+
def test_reverse_copy(self):
|
| 110 |
+
G = nx.DiGraph([(0, 1), (1, 2)])
|
| 111 |
+
R = G.reverse()
|
| 112 |
+
assert sorted(R.edges()) == [(1, 0), (2, 1)]
|
| 113 |
+
R.remove_edge(1, 0)
|
| 114 |
+
assert sorted(R.edges()) == [(2, 1)]
|
| 115 |
+
assert sorted(G.edges()) == [(0, 1), (1, 2)]
|
| 116 |
+
|
| 117 |
+
def test_reverse_nocopy(self):
|
| 118 |
+
G = nx.DiGraph([(0, 1), (1, 2)])
|
| 119 |
+
R = G.reverse(copy=False)
|
| 120 |
+
assert sorted(R.edges()) == [(1, 0), (2, 1)]
|
| 121 |
+
with pytest.raises(nx.NetworkXError):
|
| 122 |
+
R.remove_edge(1, 0)
|
| 123 |
+
|
| 124 |
+
def test_reverse_hashable(self):
|
| 125 |
+
class Foo:
|
| 126 |
+
pass
|
| 127 |
+
|
| 128 |
+
x = Foo()
|
| 129 |
+
y = Foo()
|
| 130 |
+
G = nx.DiGraph()
|
| 131 |
+
G.add_edge(x, y)
|
| 132 |
+
assert nodes_equal(G.nodes(), G.reverse().nodes())
|
| 133 |
+
assert [(y, x)] == list(G.reverse().edges())
|
| 134 |
+
|
| 135 |
+
def test_di_cache_reset(self):
|
| 136 |
+
G = self.K3.copy()
|
| 137 |
+
old_succ = G.succ
|
| 138 |
+
assert id(G.succ) == id(old_succ)
|
| 139 |
+
old_adj = G.adj
|
| 140 |
+
assert id(G.adj) == id(old_adj)
|
| 141 |
+
|
| 142 |
+
G._succ = {}
|
| 143 |
+
assert id(G.succ) != id(old_succ)
|
| 144 |
+
assert id(G.adj) != id(old_adj)
|
| 145 |
+
|
| 146 |
+
old_pred = G.pred
|
| 147 |
+
assert id(G.pred) == id(old_pred)
|
| 148 |
+
G._pred = {}
|
| 149 |
+
assert id(G.pred) != id(old_pred)
|
| 150 |
+
|
| 151 |
+
def test_di_attributes_cached(self):
|
| 152 |
+
G = self.K3.copy()
|
| 153 |
+
assert id(G.in_edges) == id(G.in_edges)
|
| 154 |
+
assert id(G.out_edges) == id(G.out_edges)
|
| 155 |
+
assert id(G.in_degree) == id(G.in_degree)
|
| 156 |
+
assert id(G.out_degree) == id(G.out_degree)
|
| 157 |
+
assert id(G.succ) == id(G.succ)
|
| 158 |
+
assert id(G.pred) == id(G.pred)
|
| 159 |
+
|
| 160 |
+
|
| 161 |
+
class BaseAttrDiGraphTester(BaseDiGraphTester, BaseAttrGraphTester):
|
| 162 |
+
def test_edges_data(self):
|
| 163 |
+
G = self.K3
|
| 164 |
+
all_edges = [
|
| 165 |
+
(0, 1, {}),
|
| 166 |
+
(0, 2, {}),
|
| 167 |
+
(1, 0, {}),
|
| 168 |
+
(1, 2, {}),
|
| 169 |
+
(2, 0, {}),
|
| 170 |
+
(2, 1, {}),
|
| 171 |
+
]
|
| 172 |
+
assert sorted(G.edges(data=True)) == all_edges
|
| 173 |
+
assert sorted(G.edges(0, data=True)) == all_edges[:2]
|
| 174 |
+
assert sorted(G.edges([0, 1], data=True)) == all_edges[:4]
|
| 175 |
+
with pytest.raises(nx.NetworkXError):
|
| 176 |
+
G.edges(-1, True)
|
| 177 |
+
|
| 178 |
+
def test_in_degree_weighted(self):
|
| 179 |
+
G = self.K3.copy()
|
| 180 |
+
G.add_edge(0, 1, weight=0.3, other=1.2)
|
| 181 |
+
assert sorted(G.in_degree(weight="weight")) == [(0, 2), (1, 1.3), (2, 2)]
|
| 182 |
+
assert dict(G.in_degree(weight="weight")) == {0: 2, 1: 1.3, 2: 2}
|
| 183 |
+
assert G.in_degree(1, weight="weight") == 1.3
|
| 184 |
+
assert sorted(G.in_degree(weight="other")) == [(0, 2), (1, 2.2), (2, 2)]
|
| 185 |
+
assert dict(G.in_degree(weight="other")) == {0: 2, 1: 2.2, 2: 2}
|
| 186 |
+
assert G.in_degree(1, weight="other") == 2.2
|
| 187 |
+
assert list(G.in_degree(iter([1]), weight="other")) == [(1, 2.2)]
|
| 188 |
+
|
| 189 |
+
def test_out_degree_weighted(self):
|
| 190 |
+
G = self.K3.copy()
|
| 191 |
+
G.add_edge(0, 1, weight=0.3, other=1.2)
|
| 192 |
+
assert sorted(G.out_degree(weight="weight")) == [(0, 1.3), (1, 2), (2, 2)]
|
| 193 |
+
assert dict(G.out_degree(weight="weight")) == {0: 1.3, 1: 2, 2: 2}
|
| 194 |
+
assert G.out_degree(0, weight="weight") == 1.3
|
| 195 |
+
assert sorted(G.out_degree(weight="other")) == [(0, 2.2), (1, 2), (2, 2)]
|
| 196 |
+
assert dict(G.out_degree(weight="other")) == {0: 2.2, 1: 2, 2: 2}
|
| 197 |
+
assert G.out_degree(0, weight="other") == 2.2
|
| 198 |
+
assert list(G.out_degree(iter([0]), weight="other")) == [(0, 2.2)]
|
| 199 |
+
|
| 200 |
+
|
| 201 |
+
class TestDiGraph(BaseAttrDiGraphTester, _TestGraph):
|
| 202 |
+
"""Tests specific to dict-of-dict-of-dict digraph data structure"""
|
| 203 |
+
|
| 204 |
+
def setup_method(self):
|
| 205 |
+
self.Graph = nx.DiGraph
|
| 206 |
+
# build dict-of-dict-of-dict K3
|
| 207 |
+
ed1, ed2, ed3, ed4, ed5, ed6 = ({}, {}, {}, {}, {}, {})
|
| 208 |
+
self.k3adj = {0: {1: ed1, 2: ed2}, 1: {0: ed3, 2: ed4}, 2: {0: ed5, 1: ed6}}
|
| 209 |
+
self.k3edges = [(0, 1), (0, 2), (1, 2)]
|
| 210 |
+
self.k3nodes = [0, 1, 2]
|
| 211 |
+
self.K3 = self.Graph()
|
| 212 |
+
self.K3._succ = self.k3adj # K3._adj is synced with K3._succ
|
| 213 |
+
self.K3._pred = {0: {1: ed3, 2: ed5}, 1: {0: ed1, 2: ed6}, 2: {0: ed2, 1: ed4}}
|
| 214 |
+
self.K3._node = {}
|
| 215 |
+
self.K3._node[0] = {}
|
| 216 |
+
self.K3._node[1] = {}
|
| 217 |
+
self.K3._node[2] = {}
|
| 218 |
+
|
| 219 |
+
ed1, ed2 = ({}, {})
|
| 220 |
+
self.P3 = self.Graph()
|
| 221 |
+
self.P3._succ = {0: {1: ed1}, 1: {2: ed2}, 2: {}}
|
| 222 |
+
self.P3._pred = {0: {}, 1: {0: ed1}, 2: {1: ed2}}
|
| 223 |
+
# P3._adj is synced with P3._succ
|
| 224 |
+
self.P3._node = {}
|
| 225 |
+
self.P3._node[0] = {}
|
| 226 |
+
self.P3._node[1] = {}
|
| 227 |
+
self.P3._node[2] = {}
|
| 228 |
+
|
| 229 |
+
def test_data_input(self):
|
| 230 |
+
G = self.Graph({1: [2], 2: [1]}, name="test")
|
| 231 |
+
assert G.name == "test"
|
| 232 |
+
assert sorted(G.adj.items()) == [(1, {2: {}}), (2, {1: {}})]
|
| 233 |
+
assert sorted(G.succ.items()) == [(1, {2: {}}), (2, {1: {}})]
|
| 234 |
+
assert sorted(G.pred.items()) == [(1, {2: {}}), (2, {1: {}})]
|
| 235 |
+
|
| 236 |
+
def test_add_edge(self):
|
| 237 |
+
G = self.Graph()
|
| 238 |
+
G.add_edge(0, 1)
|
| 239 |
+
assert G.adj == {0: {1: {}}, 1: {}}
|
| 240 |
+
assert G.succ == {0: {1: {}}, 1: {}}
|
| 241 |
+
assert G.pred == {0: {}, 1: {0: {}}}
|
| 242 |
+
G = self.Graph()
|
| 243 |
+
G.add_edge(*(0, 1))
|
| 244 |
+
assert G.adj == {0: {1: {}}, 1: {}}
|
| 245 |
+
assert G.succ == {0: {1: {}}, 1: {}}
|
| 246 |
+
assert G.pred == {0: {}, 1: {0: {}}}
|
| 247 |
+
with pytest.raises(ValueError, match="None cannot be a node"):
|
| 248 |
+
G.add_edge(None, 3)
|
| 249 |
+
|
| 250 |
+
def test_add_edges_from(self):
|
| 251 |
+
G = self.Graph()
|
| 252 |
+
G.add_edges_from([(0, 1), (0, 2, {"data": 3})], data=2)
|
| 253 |
+
assert G.adj == {0: {1: {"data": 2}, 2: {"data": 3}}, 1: {}, 2: {}}
|
| 254 |
+
assert G.succ == {0: {1: {"data": 2}, 2: {"data": 3}}, 1: {}, 2: {}}
|
| 255 |
+
assert G.pred == {0: {}, 1: {0: {"data": 2}}, 2: {0: {"data": 3}}}
|
| 256 |
+
|
| 257 |
+
with pytest.raises(nx.NetworkXError):
|
| 258 |
+
G.add_edges_from([(0,)]) # too few in tuple
|
| 259 |
+
with pytest.raises(nx.NetworkXError):
|
| 260 |
+
G.add_edges_from([(0, 1, 2, 3)]) # too many in tuple
|
| 261 |
+
with pytest.raises(TypeError):
|
| 262 |
+
G.add_edges_from([0]) # not a tuple
|
| 263 |
+
with pytest.raises(ValueError, match="None cannot be a node"):
|
| 264 |
+
G.add_edges_from([(None, 3), (3, 2)])
|
| 265 |
+
|
| 266 |
+
def test_remove_edge(self):
|
| 267 |
+
G = self.K3.copy()
|
| 268 |
+
G.remove_edge(0, 1)
|
| 269 |
+
assert G.succ == {0: {2: {}}, 1: {0: {}, 2: {}}, 2: {0: {}, 1: {}}}
|
| 270 |
+
assert G.pred == {0: {1: {}, 2: {}}, 1: {2: {}}, 2: {0: {}, 1: {}}}
|
| 271 |
+
with pytest.raises(nx.NetworkXError):
|
| 272 |
+
G.remove_edge(-1, 0)
|
| 273 |
+
|
| 274 |
+
def test_remove_edges_from(self):
|
| 275 |
+
G = self.K3.copy()
|
| 276 |
+
G.remove_edges_from([(0, 1)])
|
| 277 |
+
assert G.succ == {0: {2: {}}, 1: {0: {}, 2: {}}, 2: {0: {}, 1: {}}}
|
| 278 |
+
assert G.pred == {0: {1: {}, 2: {}}, 1: {2: {}}, 2: {0: {}, 1: {}}}
|
| 279 |
+
G.remove_edges_from([(0, 0)]) # silent fail
|
| 280 |
+
|
| 281 |
+
def test_clear(self):
|
| 282 |
+
G = self.K3
|
| 283 |
+
G.graph["name"] = "K3"
|
| 284 |
+
G.clear()
|
| 285 |
+
assert list(G.nodes) == []
|
| 286 |
+
assert G.succ == {}
|
| 287 |
+
assert G.pred == {}
|
| 288 |
+
assert G.graph == {}
|
| 289 |
+
|
| 290 |
+
def test_clear_edges(self):
|
| 291 |
+
G = self.K3
|
| 292 |
+
G.graph["name"] = "K3"
|
| 293 |
+
nodes = list(G.nodes)
|
| 294 |
+
G.clear_edges()
|
| 295 |
+
assert list(G.nodes) == nodes
|
| 296 |
+
expected = {0: {}, 1: {}, 2: {}}
|
| 297 |
+
assert G.succ == expected
|
| 298 |
+
assert G.pred == expected
|
| 299 |
+
assert list(G.edges) == []
|
| 300 |
+
assert G.graph["name"] == "K3"
|
| 301 |
+
|
| 302 |
+
|
| 303 |
+
class TestEdgeSubgraph(_TestGraphEdgeSubgraph):
|
| 304 |
+
"""Unit tests for the :meth:`DiGraph.edge_subgraph` method."""
|
| 305 |
+
|
| 306 |
+
def setup_method(self):
|
| 307 |
+
# Create a doubly-linked path graph on five nodes.
|
| 308 |
+
G = nx.DiGraph(nx.path_graph(5))
|
| 309 |
+
# Add some node, edge, and graph attributes.
|
| 310 |
+
for i in range(5):
|
| 311 |
+
G.nodes[i]["name"] = f"node{i}"
|
| 312 |
+
G.edges[0, 1]["name"] = "edge01"
|
| 313 |
+
G.edges[3, 4]["name"] = "edge34"
|
| 314 |
+
G.graph["name"] = "graph"
|
| 315 |
+
# Get the subgraph induced by the first and last edges.
|
| 316 |
+
self.G = G
|
| 317 |
+
self.H = G.edge_subgraph([(0, 1), (3, 4)])
|
| 318 |
+
|
| 319 |
+
def test_pred_succ(self):
|
| 320 |
+
"""Test that nodes are added to predecessors and successors.
|
| 321 |
+
|
| 322 |
+
For more information, see GitHub issue #2370.
|
| 323 |
+
|
| 324 |
+
"""
|
| 325 |
+
G = nx.DiGraph()
|
| 326 |
+
G.add_edge(0, 1)
|
| 327 |
+
H = G.edge_subgraph([(0, 1)])
|
| 328 |
+
assert list(H.predecessors(0)) == []
|
| 329 |
+
assert list(H.successors(0)) == [1]
|
| 330 |
+
assert list(H.predecessors(1)) == [0]
|
| 331 |
+
assert list(H.successors(1)) == []
|
minigpt2/lib/python3.10/site-packages/networkx/classes/tests/test_function.py
ADDED
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@@ -0,0 +1,1035 @@
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|
| 1 |
+
import random
|
| 2 |
+
|
| 3 |
+
import pytest
|
| 4 |
+
|
| 5 |
+
import networkx as nx
|
| 6 |
+
from networkx.utils import edges_equal, nodes_equal
|
| 7 |
+
|
| 8 |
+
|
| 9 |
+
def test_degree_histogram_empty():
|
| 10 |
+
G = nx.Graph()
|
| 11 |
+
assert nx.degree_histogram(G) == []
|
| 12 |
+
|
| 13 |
+
|
| 14 |
+
class TestFunction:
|
| 15 |
+
def setup_method(self):
|
| 16 |
+
self.G = nx.Graph({0: [1, 2, 3], 1: [1, 2, 0], 4: []}, name="Test")
|
| 17 |
+
self.Gdegree = {0: 3, 1: 2, 2: 2, 3: 1, 4: 0}
|
| 18 |
+
self.Gnodes = list(range(5))
|
| 19 |
+
self.Gedges = [(0, 1), (0, 2), (0, 3), (1, 0), (1, 1), (1, 2)]
|
| 20 |
+
self.DG = nx.DiGraph({0: [1, 2, 3], 1: [1, 2, 0], 4: []})
|
| 21 |
+
self.DGin_degree = {0: 1, 1: 2, 2: 2, 3: 1, 4: 0}
|
| 22 |
+
self.DGout_degree = {0: 3, 1: 3, 2: 0, 3: 0, 4: 0}
|
| 23 |
+
self.DGnodes = list(range(5))
|
| 24 |
+
self.DGedges = [(0, 1), (0, 2), (0, 3), (1, 0), (1, 1), (1, 2)]
|
| 25 |
+
|
| 26 |
+
def test_nodes(self):
|
| 27 |
+
assert nodes_equal(self.G.nodes(), list(nx.nodes(self.G)))
|
| 28 |
+
assert nodes_equal(self.DG.nodes(), list(nx.nodes(self.DG)))
|
| 29 |
+
|
| 30 |
+
def test_edges(self):
|
| 31 |
+
assert edges_equal(self.G.edges(), list(nx.edges(self.G)))
|
| 32 |
+
assert sorted(self.DG.edges()) == sorted(nx.edges(self.DG))
|
| 33 |
+
assert edges_equal(
|
| 34 |
+
self.G.edges(nbunch=[0, 1, 3]), list(nx.edges(self.G, nbunch=[0, 1, 3]))
|
| 35 |
+
)
|
| 36 |
+
assert sorted(self.DG.edges(nbunch=[0, 1, 3])) == sorted(
|
| 37 |
+
nx.edges(self.DG, nbunch=[0, 1, 3])
|
| 38 |
+
)
|
| 39 |
+
|
| 40 |
+
def test_degree(self):
|
| 41 |
+
assert edges_equal(self.G.degree(), list(nx.degree(self.G)))
|
| 42 |
+
assert sorted(self.DG.degree()) == sorted(nx.degree(self.DG))
|
| 43 |
+
assert edges_equal(
|
| 44 |
+
self.G.degree(nbunch=[0, 1]), list(nx.degree(self.G, nbunch=[0, 1]))
|
| 45 |
+
)
|
| 46 |
+
assert sorted(self.DG.degree(nbunch=[0, 1])) == sorted(
|
| 47 |
+
nx.degree(self.DG, nbunch=[0, 1])
|
| 48 |
+
)
|
| 49 |
+
assert edges_equal(
|
| 50 |
+
self.G.degree(weight="weight"), list(nx.degree(self.G, weight="weight"))
|
| 51 |
+
)
|
| 52 |
+
assert sorted(self.DG.degree(weight="weight")) == sorted(
|
| 53 |
+
nx.degree(self.DG, weight="weight")
|
| 54 |
+
)
|
| 55 |
+
|
| 56 |
+
def test_neighbors(self):
|
| 57 |
+
assert list(self.G.neighbors(1)) == list(nx.neighbors(self.G, 1))
|
| 58 |
+
assert list(self.DG.neighbors(1)) == list(nx.neighbors(self.DG, 1))
|
| 59 |
+
|
| 60 |
+
def test_number_of_nodes(self):
|
| 61 |
+
assert self.G.number_of_nodes() == nx.number_of_nodes(self.G)
|
| 62 |
+
assert self.DG.number_of_nodes() == nx.number_of_nodes(self.DG)
|
| 63 |
+
|
| 64 |
+
def test_number_of_edges(self):
|
| 65 |
+
assert self.G.number_of_edges() == nx.number_of_edges(self.G)
|
| 66 |
+
assert self.DG.number_of_edges() == nx.number_of_edges(self.DG)
|
| 67 |
+
|
| 68 |
+
def test_is_directed(self):
|
| 69 |
+
assert self.G.is_directed() == nx.is_directed(self.G)
|
| 70 |
+
assert self.DG.is_directed() == nx.is_directed(self.DG)
|
| 71 |
+
|
| 72 |
+
def test_add_star(self):
|
| 73 |
+
G = self.G.copy()
|
| 74 |
+
nlist = [12, 13, 14, 15]
|
| 75 |
+
nx.add_star(G, nlist)
|
| 76 |
+
assert edges_equal(G.edges(nlist), [(12, 13), (12, 14), (12, 15)])
|
| 77 |
+
|
| 78 |
+
G = self.G.copy()
|
| 79 |
+
nx.add_star(G, nlist, weight=2.0)
|
| 80 |
+
assert edges_equal(
|
| 81 |
+
G.edges(nlist, data=True),
|
| 82 |
+
[
|
| 83 |
+
(12, 13, {"weight": 2.0}),
|
| 84 |
+
(12, 14, {"weight": 2.0}),
|
| 85 |
+
(12, 15, {"weight": 2.0}),
|
| 86 |
+
],
|
| 87 |
+
)
|
| 88 |
+
|
| 89 |
+
G = self.G.copy()
|
| 90 |
+
nlist = [12]
|
| 91 |
+
nx.add_star(G, nlist)
|
| 92 |
+
assert nodes_equal(G, list(self.G) + nlist)
|
| 93 |
+
|
| 94 |
+
G = self.G.copy()
|
| 95 |
+
nlist = []
|
| 96 |
+
nx.add_star(G, nlist)
|
| 97 |
+
assert nodes_equal(G.nodes, self.Gnodes)
|
| 98 |
+
assert edges_equal(G.edges, self.G.edges)
|
| 99 |
+
|
| 100 |
+
def test_add_path(self):
|
| 101 |
+
G = self.G.copy()
|
| 102 |
+
nlist = [12, 13, 14, 15]
|
| 103 |
+
nx.add_path(G, nlist)
|
| 104 |
+
assert edges_equal(G.edges(nlist), [(12, 13), (13, 14), (14, 15)])
|
| 105 |
+
G = self.G.copy()
|
| 106 |
+
nx.add_path(G, nlist, weight=2.0)
|
| 107 |
+
assert edges_equal(
|
| 108 |
+
G.edges(nlist, data=True),
|
| 109 |
+
[
|
| 110 |
+
(12, 13, {"weight": 2.0}),
|
| 111 |
+
(13, 14, {"weight": 2.0}),
|
| 112 |
+
(14, 15, {"weight": 2.0}),
|
| 113 |
+
],
|
| 114 |
+
)
|
| 115 |
+
|
| 116 |
+
G = self.G.copy()
|
| 117 |
+
nlist = ["node"]
|
| 118 |
+
nx.add_path(G, nlist)
|
| 119 |
+
assert edges_equal(G.edges(nlist), [])
|
| 120 |
+
assert nodes_equal(G, list(self.G) + ["node"])
|
| 121 |
+
|
| 122 |
+
G = self.G.copy()
|
| 123 |
+
nlist = iter(["node"])
|
| 124 |
+
nx.add_path(G, nlist)
|
| 125 |
+
assert edges_equal(G.edges(["node"]), [])
|
| 126 |
+
assert nodes_equal(G, list(self.G) + ["node"])
|
| 127 |
+
|
| 128 |
+
G = self.G.copy()
|
| 129 |
+
nlist = [12]
|
| 130 |
+
nx.add_path(G, nlist)
|
| 131 |
+
assert edges_equal(G.edges(nlist), [])
|
| 132 |
+
assert nodes_equal(G, list(self.G) + [12])
|
| 133 |
+
|
| 134 |
+
G = self.G.copy()
|
| 135 |
+
nlist = iter([12])
|
| 136 |
+
nx.add_path(G, nlist)
|
| 137 |
+
assert edges_equal(G.edges([12]), [])
|
| 138 |
+
assert nodes_equal(G, list(self.G) + [12])
|
| 139 |
+
|
| 140 |
+
G = self.G.copy()
|
| 141 |
+
nlist = []
|
| 142 |
+
nx.add_path(G, nlist)
|
| 143 |
+
assert edges_equal(G.edges, self.G.edges)
|
| 144 |
+
assert nodes_equal(G, list(self.G))
|
| 145 |
+
|
| 146 |
+
G = self.G.copy()
|
| 147 |
+
nlist = iter([])
|
| 148 |
+
nx.add_path(G, nlist)
|
| 149 |
+
assert edges_equal(G.edges, self.G.edges)
|
| 150 |
+
assert nodes_equal(G, list(self.G))
|
| 151 |
+
|
| 152 |
+
def test_add_cycle(self):
|
| 153 |
+
G = self.G.copy()
|
| 154 |
+
nlist = [12, 13, 14, 15]
|
| 155 |
+
oklists = [
|
| 156 |
+
[(12, 13), (12, 15), (13, 14), (14, 15)],
|
| 157 |
+
[(12, 13), (13, 14), (14, 15), (15, 12)],
|
| 158 |
+
]
|
| 159 |
+
nx.add_cycle(G, nlist)
|
| 160 |
+
assert sorted(G.edges(nlist)) in oklists
|
| 161 |
+
G = self.G.copy()
|
| 162 |
+
oklists = [
|
| 163 |
+
[
|
| 164 |
+
(12, 13, {"weight": 1.0}),
|
| 165 |
+
(12, 15, {"weight": 1.0}),
|
| 166 |
+
(13, 14, {"weight": 1.0}),
|
| 167 |
+
(14, 15, {"weight": 1.0}),
|
| 168 |
+
],
|
| 169 |
+
[
|
| 170 |
+
(12, 13, {"weight": 1.0}),
|
| 171 |
+
(13, 14, {"weight": 1.0}),
|
| 172 |
+
(14, 15, {"weight": 1.0}),
|
| 173 |
+
(15, 12, {"weight": 1.0}),
|
| 174 |
+
],
|
| 175 |
+
]
|
| 176 |
+
nx.add_cycle(G, nlist, weight=1.0)
|
| 177 |
+
assert sorted(G.edges(nlist, data=True)) in oklists
|
| 178 |
+
|
| 179 |
+
G = self.G.copy()
|
| 180 |
+
nlist = [12]
|
| 181 |
+
nx.add_cycle(G, nlist)
|
| 182 |
+
assert nodes_equal(G, list(self.G) + nlist)
|
| 183 |
+
|
| 184 |
+
G = self.G.copy()
|
| 185 |
+
nlist = []
|
| 186 |
+
nx.add_cycle(G, nlist)
|
| 187 |
+
assert nodes_equal(G.nodes, self.Gnodes)
|
| 188 |
+
assert edges_equal(G.edges, self.G.edges)
|
| 189 |
+
|
| 190 |
+
def test_subgraph(self):
|
| 191 |
+
assert (
|
| 192 |
+
self.G.subgraph([0, 1, 2, 4]).adj == nx.subgraph(self.G, [0, 1, 2, 4]).adj
|
| 193 |
+
)
|
| 194 |
+
assert (
|
| 195 |
+
self.DG.subgraph([0, 1, 2, 4]).adj == nx.subgraph(self.DG, [0, 1, 2, 4]).adj
|
| 196 |
+
)
|
| 197 |
+
assert (
|
| 198 |
+
self.G.subgraph([0, 1, 2, 4]).adj
|
| 199 |
+
== nx.induced_subgraph(self.G, [0, 1, 2, 4]).adj
|
| 200 |
+
)
|
| 201 |
+
assert (
|
| 202 |
+
self.DG.subgraph([0, 1, 2, 4]).adj
|
| 203 |
+
== nx.induced_subgraph(self.DG, [0, 1, 2, 4]).adj
|
| 204 |
+
)
|
| 205 |
+
# subgraph-subgraph chain is allowed in function interface
|
| 206 |
+
H = nx.induced_subgraph(self.G.subgraph([0, 1, 2, 4]), [0, 1, 4])
|
| 207 |
+
assert H._graph is not self.G
|
| 208 |
+
assert H.adj == self.G.subgraph([0, 1, 4]).adj
|
| 209 |
+
|
| 210 |
+
def test_edge_subgraph(self):
|
| 211 |
+
assert (
|
| 212 |
+
self.G.edge_subgraph([(1, 2), (0, 3)]).adj
|
| 213 |
+
== nx.edge_subgraph(self.G, [(1, 2), (0, 3)]).adj
|
| 214 |
+
)
|
| 215 |
+
assert (
|
| 216 |
+
self.DG.edge_subgraph([(1, 2), (0, 3)]).adj
|
| 217 |
+
== nx.edge_subgraph(self.DG, [(1, 2), (0, 3)]).adj
|
| 218 |
+
)
|
| 219 |
+
|
| 220 |
+
def test_create_empty_copy(self):
|
| 221 |
+
G = nx.create_empty_copy(self.G, with_data=False)
|
| 222 |
+
assert nodes_equal(G, list(self.G))
|
| 223 |
+
assert G.graph == {}
|
| 224 |
+
assert G._node == {}.fromkeys(self.G.nodes(), {})
|
| 225 |
+
assert G._adj == {}.fromkeys(self.G.nodes(), {})
|
| 226 |
+
G = nx.create_empty_copy(self.G)
|
| 227 |
+
assert nodes_equal(G, list(self.G))
|
| 228 |
+
assert G.graph == self.G.graph
|
| 229 |
+
assert G._node == self.G._node
|
| 230 |
+
assert G._adj == {}.fromkeys(self.G.nodes(), {})
|
| 231 |
+
|
| 232 |
+
def test_degree_histogram(self):
|
| 233 |
+
assert nx.degree_histogram(self.G) == [1, 1, 1, 1, 1]
|
| 234 |
+
|
| 235 |
+
def test_density(self):
|
| 236 |
+
assert nx.density(self.G) == 0.5
|
| 237 |
+
assert nx.density(self.DG) == 0.3
|
| 238 |
+
G = nx.Graph()
|
| 239 |
+
G.add_node(1)
|
| 240 |
+
assert nx.density(G) == 0.0
|
| 241 |
+
|
| 242 |
+
def test_density_selfloop(self):
|
| 243 |
+
G = nx.Graph()
|
| 244 |
+
G.add_edge(1, 1)
|
| 245 |
+
assert nx.density(G) == 0.0
|
| 246 |
+
G.add_edge(1, 2)
|
| 247 |
+
assert nx.density(G) == 2.0
|
| 248 |
+
|
| 249 |
+
def test_freeze(self):
|
| 250 |
+
G = nx.freeze(self.G)
|
| 251 |
+
assert G.frozen
|
| 252 |
+
pytest.raises(nx.NetworkXError, G.add_node, 1)
|
| 253 |
+
pytest.raises(nx.NetworkXError, G.add_nodes_from, [1])
|
| 254 |
+
pytest.raises(nx.NetworkXError, G.remove_node, 1)
|
| 255 |
+
pytest.raises(nx.NetworkXError, G.remove_nodes_from, [1])
|
| 256 |
+
pytest.raises(nx.NetworkXError, G.add_edge, 1, 2)
|
| 257 |
+
pytest.raises(nx.NetworkXError, G.add_edges_from, [(1, 2)])
|
| 258 |
+
pytest.raises(nx.NetworkXError, G.remove_edge, 1, 2)
|
| 259 |
+
pytest.raises(nx.NetworkXError, G.remove_edges_from, [(1, 2)])
|
| 260 |
+
pytest.raises(nx.NetworkXError, G.clear_edges)
|
| 261 |
+
pytest.raises(nx.NetworkXError, G.clear)
|
| 262 |
+
|
| 263 |
+
def test_is_frozen(self):
|
| 264 |
+
assert not nx.is_frozen(self.G)
|
| 265 |
+
G = nx.freeze(self.G)
|
| 266 |
+
assert G.frozen == nx.is_frozen(self.G)
|
| 267 |
+
assert G.frozen
|
| 268 |
+
|
| 269 |
+
def test_node_attributes_are_still_mutable_on_frozen_graph(self):
|
| 270 |
+
G = nx.freeze(nx.path_graph(3))
|
| 271 |
+
node = G.nodes[0]
|
| 272 |
+
node["node_attribute"] = True
|
| 273 |
+
assert node["node_attribute"] == True
|
| 274 |
+
|
| 275 |
+
def test_edge_attributes_are_still_mutable_on_frozen_graph(self):
|
| 276 |
+
G = nx.freeze(nx.path_graph(3))
|
| 277 |
+
edge = G.edges[(0, 1)]
|
| 278 |
+
edge["edge_attribute"] = True
|
| 279 |
+
assert edge["edge_attribute"] == True
|
| 280 |
+
|
| 281 |
+
def test_neighbors_complete_graph(self):
|
| 282 |
+
graph = nx.complete_graph(100)
|
| 283 |
+
pop = random.sample(list(graph), 1)
|
| 284 |
+
nbors = list(nx.neighbors(graph, pop[0]))
|
| 285 |
+
# should be all the other vertices in the graph
|
| 286 |
+
assert len(nbors) == len(graph) - 1
|
| 287 |
+
|
| 288 |
+
graph = nx.path_graph(100)
|
| 289 |
+
node = random.sample(list(graph), 1)[0]
|
| 290 |
+
nbors = list(nx.neighbors(graph, node))
|
| 291 |
+
# should be all the other vertices in the graph
|
| 292 |
+
if node != 0 and node != 99:
|
| 293 |
+
assert len(nbors) == 2
|
| 294 |
+
else:
|
| 295 |
+
assert len(nbors) == 1
|
| 296 |
+
|
| 297 |
+
# create a star graph with 99 outer nodes
|
| 298 |
+
graph = nx.star_graph(99)
|
| 299 |
+
nbors = list(nx.neighbors(graph, 0))
|
| 300 |
+
assert len(nbors) == 99
|
| 301 |
+
|
| 302 |
+
def test_non_neighbors(self):
|
| 303 |
+
graph = nx.complete_graph(100)
|
| 304 |
+
pop = random.sample(list(graph), 1)
|
| 305 |
+
nbors = nx.non_neighbors(graph, pop[0])
|
| 306 |
+
# should be all the other vertices in the graph
|
| 307 |
+
assert len(nbors) == 0
|
| 308 |
+
|
| 309 |
+
graph = nx.path_graph(100)
|
| 310 |
+
node = random.sample(list(graph), 1)[0]
|
| 311 |
+
nbors = nx.non_neighbors(graph, node)
|
| 312 |
+
# should be all the other vertices in the graph
|
| 313 |
+
if node != 0 and node != 99:
|
| 314 |
+
assert len(nbors) == 97
|
| 315 |
+
else:
|
| 316 |
+
assert len(nbors) == 98
|
| 317 |
+
|
| 318 |
+
# create a star graph with 99 outer nodes
|
| 319 |
+
graph = nx.star_graph(99)
|
| 320 |
+
nbors = nx.non_neighbors(graph, 0)
|
| 321 |
+
assert len(nbors) == 0
|
| 322 |
+
|
| 323 |
+
# disconnected graph
|
| 324 |
+
graph = nx.Graph()
|
| 325 |
+
graph.add_nodes_from(range(10))
|
| 326 |
+
nbors = nx.non_neighbors(graph, 0)
|
| 327 |
+
assert len(nbors) == 9
|
| 328 |
+
|
| 329 |
+
def test_non_edges(self):
|
| 330 |
+
# All possible edges exist
|
| 331 |
+
graph = nx.complete_graph(5)
|
| 332 |
+
nedges = list(nx.non_edges(graph))
|
| 333 |
+
assert len(nedges) == 0
|
| 334 |
+
|
| 335 |
+
graph = nx.path_graph(4)
|
| 336 |
+
expected = [(0, 2), (0, 3), (1, 3)]
|
| 337 |
+
nedges = list(nx.non_edges(graph))
|
| 338 |
+
for u, v in expected:
|
| 339 |
+
assert (u, v) in nedges or (v, u) in nedges
|
| 340 |
+
|
| 341 |
+
graph = nx.star_graph(4)
|
| 342 |
+
expected = [(1, 2), (1, 3), (1, 4), (2, 3), (2, 4), (3, 4)]
|
| 343 |
+
nedges = list(nx.non_edges(graph))
|
| 344 |
+
for u, v in expected:
|
| 345 |
+
assert (u, v) in nedges or (v, u) in nedges
|
| 346 |
+
|
| 347 |
+
# Directed graphs
|
| 348 |
+
graph = nx.DiGraph()
|
| 349 |
+
graph.add_edges_from([(0, 2), (2, 0), (2, 1)])
|
| 350 |
+
expected = [(0, 1), (1, 0), (1, 2)]
|
| 351 |
+
nedges = list(nx.non_edges(graph))
|
| 352 |
+
for e in expected:
|
| 353 |
+
assert e in nedges
|
| 354 |
+
|
| 355 |
+
def test_is_weighted(self):
|
| 356 |
+
G = nx.Graph()
|
| 357 |
+
assert not nx.is_weighted(G)
|
| 358 |
+
|
| 359 |
+
G = nx.path_graph(4)
|
| 360 |
+
assert not nx.is_weighted(G)
|
| 361 |
+
assert not nx.is_weighted(G, (2, 3))
|
| 362 |
+
|
| 363 |
+
G.add_node(4)
|
| 364 |
+
G.add_edge(3, 4, weight=4)
|
| 365 |
+
assert not nx.is_weighted(G)
|
| 366 |
+
assert nx.is_weighted(G, (3, 4))
|
| 367 |
+
|
| 368 |
+
G = nx.DiGraph()
|
| 369 |
+
G.add_weighted_edges_from(
|
| 370 |
+
[
|
| 371 |
+
("0", "3", 3),
|
| 372 |
+
("0", "1", -5),
|
| 373 |
+
("1", "0", -5),
|
| 374 |
+
("0", "2", 2),
|
| 375 |
+
("1", "2", 4),
|
| 376 |
+
("2", "3", 1),
|
| 377 |
+
]
|
| 378 |
+
)
|
| 379 |
+
assert nx.is_weighted(G)
|
| 380 |
+
assert nx.is_weighted(G, ("1", "0"))
|
| 381 |
+
|
| 382 |
+
G = G.to_undirected()
|
| 383 |
+
assert nx.is_weighted(G)
|
| 384 |
+
assert nx.is_weighted(G, ("1", "0"))
|
| 385 |
+
|
| 386 |
+
pytest.raises(nx.NetworkXError, nx.is_weighted, G, (1, 2))
|
| 387 |
+
|
| 388 |
+
def test_is_negatively_weighted(self):
|
| 389 |
+
G = nx.Graph()
|
| 390 |
+
assert not nx.is_negatively_weighted(G)
|
| 391 |
+
|
| 392 |
+
G.add_node(1)
|
| 393 |
+
G.add_nodes_from([2, 3, 4, 5])
|
| 394 |
+
assert not nx.is_negatively_weighted(G)
|
| 395 |
+
|
| 396 |
+
G.add_edge(1, 2, weight=4)
|
| 397 |
+
assert not nx.is_negatively_weighted(G, (1, 2))
|
| 398 |
+
|
| 399 |
+
G.add_edges_from([(1, 3), (2, 4), (2, 6)])
|
| 400 |
+
G[1][3]["color"] = "blue"
|
| 401 |
+
assert not nx.is_negatively_weighted(G)
|
| 402 |
+
assert not nx.is_negatively_weighted(G, (1, 3))
|
| 403 |
+
|
| 404 |
+
G[2][4]["weight"] = -2
|
| 405 |
+
assert nx.is_negatively_weighted(G, (2, 4))
|
| 406 |
+
assert nx.is_negatively_weighted(G)
|
| 407 |
+
|
| 408 |
+
G = nx.DiGraph()
|
| 409 |
+
G.add_weighted_edges_from(
|
| 410 |
+
[
|
| 411 |
+
("0", "3", 3),
|
| 412 |
+
("0", "1", -5),
|
| 413 |
+
("1", "0", -2),
|
| 414 |
+
("0", "2", 2),
|
| 415 |
+
("1", "2", -3),
|
| 416 |
+
("2", "3", 1),
|
| 417 |
+
]
|
| 418 |
+
)
|
| 419 |
+
assert nx.is_negatively_weighted(G)
|
| 420 |
+
assert not nx.is_negatively_weighted(G, ("0", "3"))
|
| 421 |
+
assert nx.is_negatively_weighted(G, ("1", "0"))
|
| 422 |
+
|
| 423 |
+
pytest.raises(nx.NetworkXError, nx.is_negatively_weighted, G, (1, 4))
|
| 424 |
+
|
| 425 |
+
|
| 426 |
+
class TestCommonNeighbors:
|
| 427 |
+
@classmethod
|
| 428 |
+
def setup_class(cls):
|
| 429 |
+
cls.func = staticmethod(nx.common_neighbors)
|
| 430 |
+
|
| 431 |
+
def test_func(G, u, v, expected):
|
| 432 |
+
result = sorted(cls.func(G, u, v))
|
| 433 |
+
assert result == expected
|
| 434 |
+
|
| 435 |
+
cls.test = staticmethod(test_func)
|
| 436 |
+
|
| 437 |
+
def test_K5(self):
|
| 438 |
+
G = nx.complete_graph(5)
|
| 439 |
+
self.test(G, 0, 1, [2, 3, 4])
|
| 440 |
+
|
| 441 |
+
def test_P3(self):
|
| 442 |
+
G = nx.path_graph(3)
|
| 443 |
+
self.test(G, 0, 2, [1])
|
| 444 |
+
|
| 445 |
+
def test_S4(self):
|
| 446 |
+
G = nx.star_graph(4)
|
| 447 |
+
self.test(G, 1, 2, [0])
|
| 448 |
+
|
| 449 |
+
def test_digraph(self):
|
| 450 |
+
with pytest.raises(nx.NetworkXNotImplemented):
|
| 451 |
+
G = nx.DiGraph()
|
| 452 |
+
G.add_edges_from([(0, 1), (1, 2)])
|
| 453 |
+
self.func(G, 0, 2)
|
| 454 |
+
|
| 455 |
+
def test_nonexistent_nodes(self):
|
| 456 |
+
G = nx.complete_graph(5)
|
| 457 |
+
pytest.raises(nx.NetworkXError, nx.common_neighbors, G, 5, 4)
|
| 458 |
+
pytest.raises(nx.NetworkXError, nx.common_neighbors, G, 4, 5)
|
| 459 |
+
pytest.raises(nx.NetworkXError, nx.common_neighbors, G, 5, 6)
|
| 460 |
+
|
| 461 |
+
def test_custom1(self):
|
| 462 |
+
"""Case of no common neighbors."""
|
| 463 |
+
G = nx.Graph()
|
| 464 |
+
G.add_nodes_from([0, 1])
|
| 465 |
+
self.test(G, 0, 1, [])
|
| 466 |
+
|
| 467 |
+
def test_custom2(self):
|
| 468 |
+
"""Case of equal nodes."""
|
| 469 |
+
G = nx.complete_graph(4)
|
| 470 |
+
self.test(G, 0, 0, [1, 2, 3])
|
| 471 |
+
|
| 472 |
+
|
| 473 |
+
@pytest.mark.parametrize(
|
| 474 |
+
"graph_type", (nx.Graph, nx.DiGraph, nx.MultiGraph, nx.MultiDiGraph)
|
| 475 |
+
)
|
| 476 |
+
def test_set_node_attributes(graph_type):
|
| 477 |
+
# Test single value
|
| 478 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 479 |
+
vals = 100
|
| 480 |
+
attr = "hello"
|
| 481 |
+
nx.set_node_attributes(G, vals, attr)
|
| 482 |
+
assert G.nodes[0][attr] == vals
|
| 483 |
+
assert G.nodes[1][attr] == vals
|
| 484 |
+
assert G.nodes[2][attr] == vals
|
| 485 |
+
|
| 486 |
+
# Test dictionary
|
| 487 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 488 |
+
vals = dict(zip(sorted(G.nodes()), range(len(G))))
|
| 489 |
+
attr = "hi"
|
| 490 |
+
nx.set_node_attributes(G, vals, attr)
|
| 491 |
+
assert G.nodes[0][attr] == 0
|
| 492 |
+
assert G.nodes[1][attr] == 1
|
| 493 |
+
assert G.nodes[2][attr] == 2
|
| 494 |
+
|
| 495 |
+
# Test dictionary of dictionaries
|
| 496 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 497 |
+
d = {"hi": 0, "hello": 200}
|
| 498 |
+
vals = dict.fromkeys(G.nodes(), d)
|
| 499 |
+
vals.pop(0)
|
| 500 |
+
nx.set_node_attributes(G, vals)
|
| 501 |
+
assert G.nodes[0] == {}
|
| 502 |
+
assert G.nodes[1]["hi"] == 0
|
| 503 |
+
assert G.nodes[2]["hello"] == 200
|
| 504 |
+
|
| 505 |
+
|
| 506 |
+
@pytest.mark.parametrize(
|
| 507 |
+
("values", "name"),
|
| 508 |
+
(
|
| 509 |
+
({0: "red", 1: "blue"}, "color"), # values dictionary
|
| 510 |
+
({0: {"color": "red"}, 1: {"color": "blue"}}, None), # dict-of-dict
|
| 511 |
+
),
|
| 512 |
+
)
|
| 513 |
+
def test_set_node_attributes_ignores_extra_nodes(values, name):
|
| 514 |
+
"""
|
| 515 |
+
When `values` is a dict or dict-of-dict keyed by nodes, ensure that keys
|
| 516 |
+
that correspond to nodes not in G are ignored.
|
| 517 |
+
"""
|
| 518 |
+
G = nx.Graph()
|
| 519 |
+
G.add_node(0)
|
| 520 |
+
nx.set_node_attributes(G, values, name)
|
| 521 |
+
assert G.nodes[0]["color"] == "red"
|
| 522 |
+
assert 1 not in G.nodes
|
| 523 |
+
|
| 524 |
+
|
| 525 |
+
@pytest.mark.parametrize("graph_type", (nx.Graph, nx.DiGraph))
|
| 526 |
+
def test_set_edge_attributes(graph_type):
|
| 527 |
+
# Test single value
|
| 528 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 529 |
+
attr = "hello"
|
| 530 |
+
vals = 3
|
| 531 |
+
nx.set_edge_attributes(G, vals, attr)
|
| 532 |
+
assert G[0][1][attr] == vals
|
| 533 |
+
assert G[1][2][attr] == vals
|
| 534 |
+
|
| 535 |
+
# Test multiple values
|
| 536 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 537 |
+
attr = "hi"
|
| 538 |
+
edges = [(0, 1), (1, 2)]
|
| 539 |
+
vals = dict(zip(edges, range(len(edges))))
|
| 540 |
+
nx.set_edge_attributes(G, vals, attr)
|
| 541 |
+
assert G[0][1][attr] == 0
|
| 542 |
+
assert G[1][2][attr] == 1
|
| 543 |
+
|
| 544 |
+
# Test dictionary of dictionaries
|
| 545 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 546 |
+
d = {"hi": 0, "hello": 200}
|
| 547 |
+
edges = [(0, 1)]
|
| 548 |
+
vals = dict.fromkeys(edges, d)
|
| 549 |
+
nx.set_edge_attributes(G, vals)
|
| 550 |
+
assert G[0][1]["hi"] == 0
|
| 551 |
+
assert G[0][1]["hello"] == 200
|
| 552 |
+
assert G[1][2] == {}
|
| 553 |
+
|
| 554 |
+
|
| 555 |
+
@pytest.mark.parametrize(
|
| 556 |
+
("values", "name"),
|
| 557 |
+
(
|
| 558 |
+
({(0, 1): 1.0, (0, 2): 2.0}, "weight"), # values dict
|
| 559 |
+
({(0, 1): {"weight": 1.0}, (0, 2): {"weight": 2.0}}, None), # values dod
|
| 560 |
+
),
|
| 561 |
+
)
|
| 562 |
+
def test_set_edge_attributes_ignores_extra_edges(values, name):
|
| 563 |
+
"""If `values` is a dict or dict-of-dicts containing edges that are not in
|
| 564 |
+
G, data associate with these edges should be ignored.
|
| 565 |
+
"""
|
| 566 |
+
G = nx.Graph([(0, 1)])
|
| 567 |
+
nx.set_edge_attributes(G, values, name)
|
| 568 |
+
assert G[0][1]["weight"] == 1.0
|
| 569 |
+
assert (0, 2) not in G.edges
|
| 570 |
+
|
| 571 |
+
|
| 572 |
+
@pytest.mark.parametrize("graph_type", (nx.MultiGraph, nx.MultiDiGraph))
|
| 573 |
+
def test_set_edge_attributes_multi(graph_type):
|
| 574 |
+
# Test single value
|
| 575 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 576 |
+
attr = "hello"
|
| 577 |
+
vals = 3
|
| 578 |
+
nx.set_edge_attributes(G, vals, attr)
|
| 579 |
+
assert G[0][1][0][attr] == vals
|
| 580 |
+
assert G[1][2][0][attr] == vals
|
| 581 |
+
|
| 582 |
+
# Test multiple values
|
| 583 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 584 |
+
attr = "hi"
|
| 585 |
+
edges = [(0, 1, 0), (1, 2, 0)]
|
| 586 |
+
vals = dict(zip(edges, range(len(edges))))
|
| 587 |
+
nx.set_edge_attributes(G, vals, attr)
|
| 588 |
+
assert G[0][1][0][attr] == 0
|
| 589 |
+
assert G[1][2][0][attr] == 1
|
| 590 |
+
|
| 591 |
+
# Test dictionary of dictionaries
|
| 592 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 593 |
+
d = {"hi": 0, "hello": 200}
|
| 594 |
+
edges = [(0, 1, 0)]
|
| 595 |
+
vals = dict.fromkeys(edges, d)
|
| 596 |
+
nx.set_edge_attributes(G, vals)
|
| 597 |
+
assert G[0][1][0]["hi"] == 0
|
| 598 |
+
assert G[0][1][0]["hello"] == 200
|
| 599 |
+
assert G[1][2][0] == {}
|
| 600 |
+
|
| 601 |
+
|
| 602 |
+
@pytest.mark.parametrize(
|
| 603 |
+
("values", "name"),
|
| 604 |
+
(
|
| 605 |
+
({(0, 1, 0): 1.0, (0, 2, 0): 2.0}, "weight"), # values dict
|
| 606 |
+
({(0, 1, 0): {"weight": 1.0}, (0, 2, 0): {"weight": 2.0}}, None), # values dod
|
| 607 |
+
),
|
| 608 |
+
)
|
| 609 |
+
def test_set_edge_attributes_multi_ignores_extra_edges(values, name):
|
| 610 |
+
"""If `values` is a dict or dict-of-dicts containing edges that are not in
|
| 611 |
+
G, data associate with these edges should be ignored.
|
| 612 |
+
"""
|
| 613 |
+
G = nx.MultiGraph([(0, 1, 0), (0, 1, 1)])
|
| 614 |
+
nx.set_edge_attributes(G, values, name)
|
| 615 |
+
assert G[0][1][0]["weight"] == 1.0
|
| 616 |
+
assert G[0][1][1] == {}
|
| 617 |
+
assert (0, 2) not in G.edges()
|
| 618 |
+
|
| 619 |
+
|
| 620 |
+
def test_get_node_attributes():
|
| 621 |
+
graphs = [nx.Graph(), nx.DiGraph(), nx.MultiGraph(), nx.MultiDiGraph()]
|
| 622 |
+
for G in graphs:
|
| 623 |
+
G = nx.path_graph(3, create_using=G)
|
| 624 |
+
attr = "hello"
|
| 625 |
+
vals = 100
|
| 626 |
+
nx.set_node_attributes(G, vals, attr)
|
| 627 |
+
attrs = nx.get_node_attributes(G, attr)
|
| 628 |
+
assert attrs[0] == vals
|
| 629 |
+
assert attrs[1] == vals
|
| 630 |
+
assert attrs[2] == vals
|
| 631 |
+
default_val = 1
|
| 632 |
+
G.add_node(4)
|
| 633 |
+
attrs = nx.get_node_attributes(G, attr, default=default_val)
|
| 634 |
+
assert attrs[4] == default_val
|
| 635 |
+
|
| 636 |
+
|
| 637 |
+
def test_get_edge_attributes():
|
| 638 |
+
graphs = [nx.Graph(), nx.DiGraph(), nx.MultiGraph(), nx.MultiDiGraph()]
|
| 639 |
+
for G in graphs:
|
| 640 |
+
G = nx.path_graph(3, create_using=G)
|
| 641 |
+
attr = "hello"
|
| 642 |
+
vals = 100
|
| 643 |
+
nx.set_edge_attributes(G, vals, attr)
|
| 644 |
+
attrs = nx.get_edge_attributes(G, attr)
|
| 645 |
+
assert len(attrs) == 2
|
| 646 |
+
|
| 647 |
+
for edge in G.edges:
|
| 648 |
+
assert attrs[edge] == vals
|
| 649 |
+
|
| 650 |
+
default_val = vals
|
| 651 |
+
G.add_edge(4, 5)
|
| 652 |
+
deafult_attrs = nx.get_edge_attributes(G, attr, default=default_val)
|
| 653 |
+
assert len(deafult_attrs) == 3
|
| 654 |
+
|
| 655 |
+
for edge in G.edges:
|
| 656 |
+
assert deafult_attrs[edge] == vals
|
| 657 |
+
|
| 658 |
+
|
| 659 |
+
@pytest.mark.parametrize(
|
| 660 |
+
"graph_type", (nx.Graph, nx.DiGraph, nx.MultiGraph, nx.MultiDiGraph)
|
| 661 |
+
)
|
| 662 |
+
def test_remove_node_attributes(graph_type):
|
| 663 |
+
# Test removing single attribute
|
| 664 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 665 |
+
vals = 100
|
| 666 |
+
attr = "hello"
|
| 667 |
+
nx.set_node_attributes(G, vals, attr)
|
| 668 |
+
nx.remove_node_attributes(G, attr)
|
| 669 |
+
assert attr not in G.nodes[0]
|
| 670 |
+
assert attr not in G.nodes[1]
|
| 671 |
+
assert attr not in G.nodes[2]
|
| 672 |
+
|
| 673 |
+
# Test removing single attribute when multiple present
|
| 674 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 675 |
+
other_vals = 200
|
| 676 |
+
other_attr = "other"
|
| 677 |
+
nx.set_node_attributes(G, vals, attr)
|
| 678 |
+
nx.set_node_attributes(G, other_vals, other_attr)
|
| 679 |
+
nx.remove_node_attributes(G, attr)
|
| 680 |
+
assert attr not in G.nodes[0]
|
| 681 |
+
assert G.nodes[0][other_attr] == other_vals
|
| 682 |
+
assert attr not in G.nodes[1]
|
| 683 |
+
assert G.nodes[1][other_attr] == other_vals
|
| 684 |
+
assert attr not in G.nodes[2]
|
| 685 |
+
assert G.nodes[2][other_attr] == other_vals
|
| 686 |
+
|
| 687 |
+
# Test removing multiple attributes
|
| 688 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 689 |
+
nx.set_node_attributes(G, vals, attr)
|
| 690 |
+
nx.set_node_attributes(G, other_vals, other_attr)
|
| 691 |
+
nx.remove_node_attributes(G, attr, other_attr)
|
| 692 |
+
assert attr not in G.nodes[0] and other_attr not in G.nodes[0]
|
| 693 |
+
assert attr not in G.nodes[1] and other_attr not in G.nodes[1]
|
| 694 |
+
assert attr not in G.nodes[2] and other_attr not in G.nodes[2]
|
| 695 |
+
|
| 696 |
+
# Test removing multiple (but not all) attributes
|
| 697 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 698 |
+
third_vals = 300
|
| 699 |
+
third_attr = "three"
|
| 700 |
+
nx.set_node_attributes(
|
| 701 |
+
G,
|
| 702 |
+
{
|
| 703 |
+
n: {attr: vals, other_attr: other_vals, third_attr: third_vals}
|
| 704 |
+
for n in G.nodes()
|
| 705 |
+
},
|
| 706 |
+
)
|
| 707 |
+
nx.remove_node_attributes(G, other_attr, third_attr)
|
| 708 |
+
assert other_attr not in G.nodes[0] and third_attr not in G.nodes[0]
|
| 709 |
+
assert other_attr not in G.nodes[1] and third_attr not in G.nodes[1]
|
| 710 |
+
assert other_attr not in G.nodes[2] and third_attr not in G.nodes[2]
|
| 711 |
+
assert G.nodes[0][attr] == vals
|
| 712 |
+
assert G.nodes[1][attr] == vals
|
| 713 |
+
assert G.nodes[2][attr] == vals
|
| 714 |
+
|
| 715 |
+
# Test incomplete node attributes
|
| 716 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 717 |
+
nx.set_node_attributes(
|
| 718 |
+
G,
|
| 719 |
+
{
|
| 720 |
+
1: {attr: vals, other_attr: other_vals},
|
| 721 |
+
2: {attr: vals, other_attr: other_vals},
|
| 722 |
+
},
|
| 723 |
+
)
|
| 724 |
+
nx.remove_node_attributes(G, attr)
|
| 725 |
+
assert attr not in G.nodes[0]
|
| 726 |
+
assert attr not in G.nodes[1]
|
| 727 |
+
assert attr not in G.nodes[2]
|
| 728 |
+
assert G.nodes[1][other_attr] == other_vals
|
| 729 |
+
assert G.nodes[2][other_attr] == other_vals
|
| 730 |
+
|
| 731 |
+
# Test removing on a subset of nodes
|
| 732 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 733 |
+
nx.set_node_attributes(
|
| 734 |
+
G,
|
| 735 |
+
{
|
| 736 |
+
n: {attr: vals, other_attr: other_vals, third_attr: third_vals}
|
| 737 |
+
for n in G.nodes()
|
| 738 |
+
},
|
| 739 |
+
)
|
| 740 |
+
nx.remove_node_attributes(G, attr, other_attr, nbunch=[0, 1])
|
| 741 |
+
assert attr not in G.nodes[0] and other_attr not in G.nodes[0]
|
| 742 |
+
assert attr not in G.nodes[1] and other_attr not in G.nodes[1]
|
| 743 |
+
assert attr in G.nodes[2] and other_attr in G.nodes[2]
|
| 744 |
+
assert third_attr in G.nodes[0] and G.nodes[0][third_attr] == third_vals
|
| 745 |
+
assert third_attr in G.nodes[1] and G.nodes[1][third_attr] == third_vals
|
| 746 |
+
|
| 747 |
+
|
| 748 |
+
@pytest.mark.parametrize("graph_type", (nx.Graph, nx.DiGraph))
|
| 749 |
+
def test_remove_edge_attributes(graph_type):
|
| 750 |
+
# Test removing single attribute
|
| 751 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 752 |
+
attr = "hello"
|
| 753 |
+
vals = 100
|
| 754 |
+
nx.set_edge_attributes(G, vals, attr)
|
| 755 |
+
nx.remove_edge_attributes(G, attr)
|
| 756 |
+
assert len(nx.get_edge_attributes(G, attr)) == 0
|
| 757 |
+
|
| 758 |
+
# Test removing only some attributes
|
| 759 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 760 |
+
other_attr = "other"
|
| 761 |
+
other_vals = 200
|
| 762 |
+
nx.set_edge_attributes(G, vals, attr)
|
| 763 |
+
nx.set_edge_attributes(G, other_vals, other_attr)
|
| 764 |
+
nx.remove_edge_attributes(G, attr)
|
| 765 |
+
|
| 766 |
+
assert attr not in G[0][1]
|
| 767 |
+
assert attr not in G[1][2]
|
| 768 |
+
assert G[0][1][other_attr] == 200
|
| 769 |
+
assert G[1][2][other_attr] == 200
|
| 770 |
+
|
| 771 |
+
# Test removing multiple attributes
|
| 772 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 773 |
+
nx.set_edge_attributes(G, vals, attr)
|
| 774 |
+
nx.set_edge_attributes(G, other_vals, other_attr)
|
| 775 |
+
nx.remove_edge_attributes(G, attr, other_attr)
|
| 776 |
+
assert attr not in G[0][1] and other_attr not in G[0][1]
|
| 777 |
+
assert attr not in G[1][2] and other_attr not in G[1][2]
|
| 778 |
+
|
| 779 |
+
# Test removing multiple (not all) attributes
|
| 780 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 781 |
+
third_attr = "third"
|
| 782 |
+
third_vals = 300
|
| 783 |
+
nx.set_edge_attributes(
|
| 784 |
+
G,
|
| 785 |
+
{
|
| 786 |
+
(u, v): {attr: vals, other_attr: other_vals, third_attr: third_vals}
|
| 787 |
+
for u, v in G.edges()
|
| 788 |
+
},
|
| 789 |
+
)
|
| 790 |
+
nx.remove_edge_attributes(G, other_attr, third_attr)
|
| 791 |
+
assert other_attr not in G[0][1] and third_attr not in G[0][1]
|
| 792 |
+
assert other_attr not in G[1][2] and third_attr not in G[1][2]
|
| 793 |
+
assert G[0][1][attr] == vals
|
| 794 |
+
assert G[1][2][attr] == vals
|
| 795 |
+
|
| 796 |
+
# Test removing incomplete edge attributes
|
| 797 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 798 |
+
nx.set_edge_attributes(G, {(0, 1): {attr: vals, other_attr: other_vals}})
|
| 799 |
+
nx.remove_edge_attributes(G, other_attr)
|
| 800 |
+
assert other_attr not in G[0][1] and G[0][1][attr] == vals
|
| 801 |
+
assert other_attr not in G[1][2]
|
| 802 |
+
|
| 803 |
+
# Test removing subset of edge attributes
|
| 804 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 805 |
+
nx.set_edge_attributes(
|
| 806 |
+
G,
|
| 807 |
+
{
|
| 808 |
+
(u, v): {attr: vals, other_attr: other_vals, third_attr: third_vals}
|
| 809 |
+
for u, v in G.edges()
|
| 810 |
+
},
|
| 811 |
+
)
|
| 812 |
+
nx.remove_edge_attributes(G, other_attr, third_attr, ebunch=[(0, 1)])
|
| 813 |
+
assert other_attr not in G[0][1] and third_attr not in G[0][1]
|
| 814 |
+
assert other_attr in G[1][2] and third_attr in G[1][2]
|
| 815 |
+
|
| 816 |
+
|
| 817 |
+
@pytest.mark.parametrize("graph_type", (nx.MultiGraph, nx.MultiDiGraph))
|
| 818 |
+
def test_remove_multi_edge_attributes(graph_type):
|
| 819 |
+
# Test removing single attribute
|
| 820 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 821 |
+
G.add_edge(1, 2)
|
| 822 |
+
attr = "hello"
|
| 823 |
+
vals = 100
|
| 824 |
+
nx.set_edge_attributes(G, vals, attr)
|
| 825 |
+
nx.remove_edge_attributes(G, attr)
|
| 826 |
+
assert attr not in G[0][1][0]
|
| 827 |
+
assert attr not in G[1][2][0]
|
| 828 |
+
assert attr not in G[1][2][1]
|
| 829 |
+
|
| 830 |
+
# Test removing only some attributes
|
| 831 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 832 |
+
G.add_edge(1, 2)
|
| 833 |
+
other_attr = "other"
|
| 834 |
+
other_vals = 200
|
| 835 |
+
nx.set_edge_attributes(G, vals, attr)
|
| 836 |
+
nx.set_edge_attributes(G, other_vals, other_attr)
|
| 837 |
+
nx.remove_edge_attributes(G, attr)
|
| 838 |
+
assert attr not in G[0][1][0]
|
| 839 |
+
assert attr not in G[1][2][0]
|
| 840 |
+
assert attr not in G[1][2][1]
|
| 841 |
+
assert G[0][1][0][other_attr] == other_vals
|
| 842 |
+
assert G[1][2][0][other_attr] == other_vals
|
| 843 |
+
assert G[1][2][1][other_attr] == other_vals
|
| 844 |
+
|
| 845 |
+
# Test removing multiple attributes
|
| 846 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 847 |
+
G.add_edge(1, 2)
|
| 848 |
+
nx.set_edge_attributes(G, vals, attr)
|
| 849 |
+
nx.set_edge_attributes(G, other_vals, other_attr)
|
| 850 |
+
nx.remove_edge_attributes(G, attr, other_attr)
|
| 851 |
+
assert attr not in G[0][1][0] and other_attr not in G[0][1][0]
|
| 852 |
+
assert attr not in G[1][2][0] and other_attr not in G[1][2][0]
|
| 853 |
+
assert attr not in G[1][2][1] and other_attr not in G[1][2][1]
|
| 854 |
+
|
| 855 |
+
# Test removing multiple (not all) attributes
|
| 856 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 857 |
+
G.add_edge(1, 2)
|
| 858 |
+
third_attr = "third"
|
| 859 |
+
third_vals = 300
|
| 860 |
+
nx.set_edge_attributes(
|
| 861 |
+
G,
|
| 862 |
+
{
|
| 863 |
+
(u, v, k): {attr: vals, other_attr: other_vals, third_attr: third_vals}
|
| 864 |
+
for u, v, k in G.edges(keys=True)
|
| 865 |
+
},
|
| 866 |
+
)
|
| 867 |
+
nx.remove_edge_attributes(G, other_attr, third_attr)
|
| 868 |
+
assert other_attr not in G[0][1][0] and third_attr not in G[0][1][0]
|
| 869 |
+
assert other_attr not in G[1][2][0] and other_attr not in G[1][2][0]
|
| 870 |
+
assert other_attr not in G[1][2][1] and other_attr not in G[1][2][1]
|
| 871 |
+
assert G[0][1][0][attr] == vals
|
| 872 |
+
assert G[1][2][0][attr] == vals
|
| 873 |
+
assert G[1][2][1][attr] == vals
|
| 874 |
+
|
| 875 |
+
# Test removing incomplete edge attributes
|
| 876 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 877 |
+
G.add_edge(1, 2)
|
| 878 |
+
nx.set_edge_attributes(
|
| 879 |
+
G,
|
| 880 |
+
{
|
| 881 |
+
(0, 1, 0): {attr: vals, other_attr: other_vals},
|
| 882 |
+
(1, 2, 1): {attr: vals, other_attr: other_vals},
|
| 883 |
+
},
|
| 884 |
+
)
|
| 885 |
+
nx.remove_edge_attributes(G, other_attr)
|
| 886 |
+
assert other_attr not in G[0][1][0] and G[0][1][0][attr] == vals
|
| 887 |
+
assert other_attr not in G[1][2][0]
|
| 888 |
+
assert other_attr not in G[1][2][1]
|
| 889 |
+
|
| 890 |
+
# Test removing subset of edge attributes
|
| 891 |
+
G = nx.path_graph(3, create_using=graph_type)
|
| 892 |
+
G.add_edge(1, 2)
|
| 893 |
+
nx.set_edge_attributes(
|
| 894 |
+
G,
|
| 895 |
+
{
|
| 896 |
+
(0, 1, 0): {attr: vals, other_attr: other_vals},
|
| 897 |
+
(1, 2, 0): {attr: vals, other_attr: other_vals},
|
| 898 |
+
(1, 2, 1): {attr: vals, other_attr: other_vals},
|
| 899 |
+
},
|
| 900 |
+
)
|
| 901 |
+
nx.remove_edge_attributes(G, attr, ebunch=[(0, 1, 0), (1, 2, 0)])
|
| 902 |
+
assert attr not in G[0][1][0] and other_attr in G[0][1][0]
|
| 903 |
+
assert attr not in G[1][2][0] and other_attr in G[1][2][0]
|
| 904 |
+
assert attr in G[1][2][1] and other_attr in G[1][2][1]
|
| 905 |
+
|
| 906 |
+
|
| 907 |
+
def test_is_empty():
|
| 908 |
+
graphs = [nx.Graph(), nx.DiGraph(), nx.MultiGraph(), nx.MultiDiGraph()]
|
| 909 |
+
for G in graphs:
|
| 910 |
+
assert nx.is_empty(G)
|
| 911 |
+
G.add_nodes_from(range(5))
|
| 912 |
+
assert nx.is_empty(G)
|
| 913 |
+
G.add_edges_from([(1, 2), (3, 4)])
|
| 914 |
+
assert not nx.is_empty(G)
|
| 915 |
+
|
| 916 |
+
|
| 917 |
+
@pytest.mark.parametrize(
|
| 918 |
+
"graph_type", [nx.Graph, nx.DiGraph, nx.MultiGraph, nx.MultiDiGraph]
|
| 919 |
+
)
|
| 920 |
+
def test_selfloops(graph_type):
|
| 921 |
+
G = nx.complete_graph(3, create_using=graph_type)
|
| 922 |
+
G.add_edge(0, 0)
|
| 923 |
+
assert nodes_equal(nx.nodes_with_selfloops(G), [0])
|
| 924 |
+
assert edges_equal(nx.selfloop_edges(G), [(0, 0)])
|
| 925 |
+
assert edges_equal(nx.selfloop_edges(G, data=True), [(0, 0, {})])
|
| 926 |
+
assert nx.number_of_selfloops(G) == 1
|
| 927 |
+
|
| 928 |
+
|
| 929 |
+
@pytest.mark.parametrize(
|
| 930 |
+
"graph_type", [nx.Graph, nx.DiGraph, nx.MultiGraph, nx.MultiDiGraph]
|
| 931 |
+
)
|
| 932 |
+
def test_selfloop_edges_attr(graph_type):
|
| 933 |
+
G = nx.complete_graph(3, create_using=graph_type)
|
| 934 |
+
G.add_edge(0, 0)
|
| 935 |
+
G.add_edge(1, 1, weight=2)
|
| 936 |
+
assert edges_equal(
|
| 937 |
+
nx.selfloop_edges(G, data=True), [(0, 0, {}), (1, 1, {"weight": 2})]
|
| 938 |
+
)
|
| 939 |
+
assert edges_equal(nx.selfloop_edges(G, data="weight"), [(0, 0, None), (1, 1, 2)])
|
| 940 |
+
|
| 941 |
+
|
| 942 |
+
def test_selfloop_edges_multi_with_data_and_keys():
|
| 943 |
+
G = nx.complete_graph(3, create_using=nx.MultiGraph)
|
| 944 |
+
G.add_edge(0, 0, weight=10)
|
| 945 |
+
G.add_edge(0, 0, weight=100)
|
| 946 |
+
assert edges_equal(
|
| 947 |
+
nx.selfloop_edges(G, data="weight", keys=True), [(0, 0, 0, 10), (0, 0, 1, 100)]
|
| 948 |
+
)
|
| 949 |
+
|
| 950 |
+
|
| 951 |
+
@pytest.mark.parametrize("graph_type", [nx.Graph, nx.DiGraph])
|
| 952 |
+
def test_selfloops_removal(graph_type):
|
| 953 |
+
G = nx.complete_graph(3, create_using=graph_type)
|
| 954 |
+
G.add_edge(0, 0)
|
| 955 |
+
G.remove_edges_from(nx.selfloop_edges(G, keys=True))
|
| 956 |
+
G.add_edge(0, 0)
|
| 957 |
+
G.remove_edges_from(nx.selfloop_edges(G, data=True))
|
| 958 |
+
G.add_edge(0, 0)
|
| 959 |
+
G.remove_edges_from(nx.selfloop_edges(G, keys=True, data=True))
|
| 960 |
+
|
| 961 |
+
|
| 962 |
+
@pytest.mark.parametrize("graph_type", [nx.MultiGraph, nx.MultiDiGraph])
|
| 963 |
+
def test_selfloops_removal_multi(graph_type):
|
| 964 |
+
"""test removing selfloops behavior vis-a-vis altering a dict while iterating.
|
| 965 |
+
cf. gh-4068"""
|
| 966 |
+
G = nx.complete_graph(3, create_using=graph_type)
|
| 967 |
+
# Defaults - see gh-4080
|
| 968 |
+
G.add_edge(0, 0)
|
| 969 |
+
G.add_edge(0, 0)
|
| 970 |
+
G.remove_edges_from(nx.selfloop_edges(G))
|
| 971 |
+
assert (0, 0) not in G.edges()
|
| 972 |
+
# With keys
|
| 973 |
+
G.add_edge(0, 0)
|
| 974 |
+
G.add_edge(0, 0)
|
| 975 |
+
with pytest.raises(RuntimeError):
|
| 976 |
+
G.remove_edges_from(nx.selfloop_edges(G, keys=True))
|
| 977 |
+
# With data
|
| 978 |
+
G.add_edge(0, 0)
|
| 979 |
+
G.add_edge(0, 0)
|
| 980 |
+
with pytest.raises(TypeError):
|
| 981 |
+
G.remove_edges_from(nx.selfloop_edges(G, data=True))
|
| 982 |
+
# With keys and data
|
| 983 |
+
G.add_edge(0, 0)
|
| 984 |
+
G.add_edge(0, 0)
|
| 985 |
+
with pytest.raises(RuntimeError):
|
| 986 |
+
G.remove_edges_from(nx.selfloop_edges(G, data=True, keys=True))
|
| 987 |
+
|
| 988 |
+
|
| 989 |
+
def test_pathweight():
|
| 990 |
+
valid_path = [1, 2, 3]
|
| 991 |
+
invalid_path = [1, 3, 2]
|
| 992 |
+
graphs = [nx.Graph(), nx.DiGraph(), nx.MultiGraph(), nx.MultiDiGraph()]
|
| 993 |
+
edges = [
|
| 994 |
+
(1, 2, {"cost": 5, "dist": 6}),
|
| 995 |
+
(2, 3, {"cost": 3, "dist": 4}),
|
| 996 |
+
(1, 2, {"cost": 1, "dist": 2}),
|
| 997 |
+
]
|
| 998 |
+
for graph in graphs:
|
| 999 |
+
graph.add_edges_from(edges)
|
| 1000 |
+
assert nx.path_weight(graph, valid_path, "cost") == 4
|
| 1001 |
+
assert nx.path_weight(graph, valid_path, "dist") == 6
|
| 1002 |
+
pytest.raises(nx.NetworkXNoPath, nx.path_weight, graph, invalid_path, "cost")
|
| 1003 |
+
|
| 1004 |
+
|
| 1005 |
+
@pytest.mark.parametrize(
|
| 1006 |
+
"G", (nx.Graph(), nx.DiGraph(), nx.MultiGraph(), nx.MultiDiGraph())
|
| 1007 |
+
)
|
| 1008 |
+
def test_ispath(G):
|
| 1009 |
+
G.add_edges_from([(1, 2), (2, 3), (1, 2), (3, 4)])
|
| 1010 |
+
valid_path = [1, 2, 3, 4]
|
| 1011 |
+
invalid_path = [1, 2, 4, 3] # wrong node order
|
| 1012 |
+
another_invalid_path = [1, 2, 3, 4, 5] # contains node not in G
|
| 1013 |
+
assert nx.is_path(G, valid_path)
|
| 1014 |
+
assert not nx.is_path(G, invalid_path)
|
| 1015 |
+
assert not nx.is_path(G, another_invalid_path)
|
| 1016 |
+
|
| 1017 |
+
|
| 1018 |
+
@pytest.mark.parametrize("G", (nx.Graph(), nx.DiGraph()))
|
| 1019 |
+
def test_restricted_view(G):
|
| 1020 |
+
G.add_edges_from([(0, 1), (0, 2), (0, 3), (1, 0), (1, 1), (1, 2)])
|
| 1021 |
+
G.add_node(4)
|
| 1022 |
+
H = nx.restricted_view(G, [0, 2, 5], [(1, 2), (3, 4)])
|
| 1023 |
+
assert set(H.nodes()) == {1, 3, 4}
|
| 1024 |
+
assert set(H.edges()) == {(1, 1)}
|
| 1025 |
+
|
| 1026 |
+
|
| 1027 |
+
@pytest.mark.parametrize("G", (nx.MultiGraph(), nx.MultiDiGraph()))
|
| 1028 |
+
def test_restricted_view_multi(G):
|
| 1029 |
+
G.add_edges_from(
|
| 1030 |
+
[(0, 1, 0), (0, 2, 0), (0, 3, 0), (0, 1, 1), (1, 0, 0), (1, 1, 0), (1, 2, 0)]
|
| 1031 |
+
)
|
| 1032 |
+
G.add_node(4)
|
| 1033 |
+
H = nx.restricted_view(G, [0, 2, 5], [(1, 2, 0), (3, 4, 0)])
|
| 1034 |
+
assert set(H.nodes()) == {1, 3, 4}
|
| 1035 |
+
assert set(H.edges()) == {(1, 1)}
|
minigpt2/lib/python3.10/site-packages/networkx/classes/tests/test_graph.py
ADDED
|
@@ -0,0 +1,920 @@
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|
| 1 |
+
import gc
|
| 2 |
+
import pickle
|
| 3 |
+
import platform
|
| 4 |
+
import weakref
|
| 5 |
+
|
| 6 |
+
import pytest
|
| 7 |
+
|
| 8 |
+
import networkx as nx
|
| 9 |
+
from networkx.utils import edges_equal, graphs_equal, nodes_equal
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
class BaseGraphTester:
|
| 13 |
+
"""Tests for data-structure independent graph class features."""
|
| 14 |
+
|
| 15 |
+
def test_contains(self):
|
| 16 |
+
G = self.K3
|
| 17 |
+
assert 1 in G
|
| 18 |
+
assert 4 not in G
|
| 19 |
+
assert "b" not in G
|
| 20 |
+
assert [] not in G # no exception for nonhashable
|
| 21 |
+
assert {1: 1} not in G # no exception for nonhashable
|
| 22 |
+
|
| 23 |
+
def test_order(self):
|
| 24 |
+
G = self.K3
|
| 25 |
+
assert len(G) == 3
|
| 26 |
+
assert G.order() == 3
|
| 27 |
+
assert G.number_of_nodes() == 3
|
| 28 |
+
|
| 29 |
+
def test_nodes(self):
|
| 30 |
+
G = self.K3
|
| 31 |
+
assert isinstance(G._node, G.node_dict_factory)
|
| 32 |
+
assert isinstance(G._adj, G.adjlist_outer_dict_factory)
|
| 33 |
+
assert all(
|
| 34 |
+
isinstance(adj, G.adjlist_inner_dict_factory) for adj in G._adj.values()
|
| 35 |
+
)
|
| 36 |
+
assert sorted(G.nodes()) == self.k3nodes
|
| 37 |
+
assert sorted(G.nodes(data=True)) == [(0, {}), (1, {}), (2, {})]
|
| 38 |
+
|
| 39 |
+
def test_none_node(self):
|
| 40 |
+
G = self.Graph()
|
| 41 |
+
with pytest.raises(ValueError):
|
| 42 |
+
G.add_node(None)
|
| 43 |
+
with pytest.raises(ValueError):
|
| 44 |
+
G.add_nodes_from([None])
|
| 45 |
+
with pytest.raises(ValueError):
|
| 46 |
+
G.add_edge(0, None)
|
| 47 |
+
with pytest.raises(ValueError):
|
| 48 |
+
G.add_edges_from([(0, None)])
|
| 49 |
+
|
| 50 |
+
def test_has_node(self):
|
| 51 |
+
G = self.K3
|
| 52 |
+
assert G.has_node(1)
|
| 53 |
+
assert not G.has_node(4)
|
| 54 |
+
assert not G.has_node([]) # no exception for nonhashable
|
| 55 |
+
assert not G.has_node({1: 1}) # no exception for nonhashable
|
| 56 |
+
|
| 57 |
+
def test_has_edge(self):
|
| 58 |
+
G = self.K3
|
| 59 |
+
assert G.has_edge(0, 1)
|
| 60 |
+
assert not G.has_edge(0, -1)
|
| 61 |
+
|
| 62 |
+
def test_neighbors(self):
|
| 63 |
+
G = self.K3
|
| 64 |
+
assert sorted(G.neighbors(0)) == [1, 2]
|
| 65 |
+
with pytest.raises(nx.NetworkXError):
|
| 66 |
+
G.neighbors(-1)
|
| 67 |
+
|
| 68 |
+
@pytest.mark.skipif(
|
| 69 |
+
platform.python_implementation() == "PyPy", reason="PyPy gc is different"
|
| 70 |
+
)
|
| 71 |
+
def test_memory_leak(self):
|
| 72 |
+
G = self.Graph()
|
| 73 |
+
|
| 74 |
+
def count_objects_of_type(_type):
|
| 75 |
+
# Iterating over all objects tracked by gc can include weak references
|
| 76 |
+
# whose weakly-referenced objects may no longer exist. Calling `isinstance`
|
| 77 |
+
# on such a weak reference will raise ReferenceError. There are at least
|
| 78 |
+
# three workarounds for this: one is to compare type names instead of using
|
| 79 |
+
# `isinstance` such as `type(obj).__name__ == typename`, another is to use
|
| 80 |
+
# `type(obj) == _type`, and the last is to ignore ProxyTypes as we do below.
|
| 81 |
+
# NOTE: even if this safeguard is deemed unnecessary to pass NetworkX tests,
|
| 82 |
+
# we should still keep it for maximum safety for other NetworkX backends.
|
| 83 |
+
return sum(
|
| 84 |
+
1
|
| 85 |
+
for obj in gc.get_objects()
|
| 86 |
+
if not isinstance(obj, weakref.ProxyTypes) and isinstance(obj, _type)
|
| 87 |
+
)
|
| 88 |
+
|
| 89 |
+
gc.collect()
|
| 90 |
+
before = count_objects_of_type(self.Graph)
|
| 91 |
+
G.copy()
|
| 92 |
+
gc.collect()
|
| 93 |
+
after = count_objects_of_type(self.Graph)
|
| 94 |
+
assert before == after
|
| 95 |
+
|
| 96 |
+
# test a subgraph of the base class
|
| 97 |
+
class MyGraph(self.Graph):
|
| 98 |
+
pass
|
| 99 |
+
|
| 100 |
+
gc.collect()
|
| 101 |
+
G = MyGraph()
|
| 102 |
+
before = count_objects_of_type(MyGraph)
|
| 103 |
+
G.copy()
|
| 104 |
+
gc.collect()
|
| 105 |
+
after = count_objects_of_type(MyGraph)
|
| 106 |
+
assert before == after
|
| 107 |
+
|
| 108 |
+
def test_edges(self):
|
| 109 |
+
G = self.K3
|
| 110 |
+
assert isinstance(G._adj, G.adjlist_outer_dict_factory)
|
| 111 |
+
assert edges_equal(G.edges(), [(0, 1), (0, 2), (1, 2)])
|
| 112 |
+
assert edges_equal(G.edges(0), [(0, 1), (0, 2)])
|
| 113 |
+
assert edges_equal(G.edges([0, 1]), [(0, 1), (0, 2), (1, 2)])
|
| 114 |
+
with pytest.raises(nx.NetworkXError):
|
| 115 |
+
G.edges(-1)
|
| 116 |
+
|
| 117 |
+
def test_degree(self):
|
| 118 |
+
G = self.K3
|
| 119 |
+
assert sorted(G.degree()) == [(0, 2), (1, 2), (2, 2)]
|
| 120 |
+
assert dict(G.degree()) == {0: 2, 1: 2, 2: 2}
|
| 121 |
+
assert G.degree(0) == 2
|
| 122 |
+
with pytest.raises(nx.NetworkXError):
|
| 123 |
+
G.degree(-1) # node not in graph
|
| 124 |
+
|
| 125 |
+
def test_size(self):
|
| 126 |
+
G = self.K3
|
| 127 |
+
assert G.size() == 3
|
| 128 |
+
assert G.number_of_edges() == 3
|
| 129 |
+
|
| 130 |
+
def test_nbunch_iter(self):
|
| 131 |
+
G = self.K3
|
| 132 |
+
assert nodes_equal(G.nbunch_iter(), self.k3nodes) # all nodes
|
| 133 |
+
assert nodes_equal(G.nbunch_iter(0), [0]) # single node
|
| 134 |
+
assert nodes_equal(G.nbunch_iter([0, 1]), [0, 1]) # sequence
|
| 135 |
+
# sequence with none in graph
|
| 136 |
+
assert nodes_equal(G.nbunch_iter([-1]), [])
|
| 137 |
+
# string sequence with none in graph
|
| 138 |
+
assert nodes_equal(G.nbunch_iter("foo"), [])
|
| 139 |
+
# node not in graph doesn't get caught upon creation of iterator
|
| 140 |
+
bunch = G.nbunch_iter(-1)
|
| 141 |
+
# but gets caught when iterator used
|
| 142 |
+
with pytest.raises(nx.NetworkXError, match="is not a node or a sequence"):
|
| 143 |
+
list(bunch)
|
| 144 |
+
# unhashable doesn't get caught upon creation of iterator
|
| 145 |
+
bunch = G.nbunch_iter([0, 1, 2, {}])
|
| 146 |
+
# but gets caught when iterator hits the unhashable
|
| 147 |
+
with pytest.raises(
|
| 148 |
+
nx.NetworkXError, match="in sequence nbunch is not a valid node"
|
| 149 |
+
):
|
| 150 |
+
list(bunch)
|
| 151 |
+
|
| 152 |
+
def test_nbunch_iter_node_format_raise(self):
|
| 153 |
+
# Tests that a node that would have failed string formatting
|
| 154 |
+
# doesn't cause an error when attempting to raise a
|
| 155 |
+
# :exc:`nx.NetworkXError`.
|
| 156 |
+
|
| 157 |
+
# For more information, see pull request #1813.
|
| 158 |
+
G = self.Graph()
|
| 159 |
+
nbunch = [("x", set())]
|
| 160 |
+
with pytest.raises(nx.NetworkXError):
|
| 161 |
+
list(G.nbunch_iter(nbunch))
|
| 162 |
+
|
| 163 |
+
def test_selfloop_degree(self):
|
| 164 |
+
G = self.Graph()
|
| 165 |
+
G.add_edge(1, 1)
|
| 166 |
+
assert sorted(G.degree()) == [(1, 2)]
|
| 167 |
+
assert dict(G.degree()) == {1: 2}
|
| 168 |
+
assert G.degree(1) == 2
|
| 169 |
+
assert sorted(G.degree([1])) == [(1, 2)]
|
| 170 |
+
assert G.degree(1, weight="weight") == 2
|
| 171 |
+
|
| 172 |
+
def test_selfloops(self):
|
| 173 |
+
G = self.K3.copy()
|
| 174 |
+
G.add_edge(0, 0)
|
| 175 |
+
assert nodes_equal(nx.nodes_with_selfloops(G), [0])
|
| 176 |
+
assert edges_equal(nx.selfloop_edges(G), [(0, 0)])
|
| 177 |
+
assert nx.number_of_selfloops(G) == 1
|
| 178 |
+
G.remove_edge(0, 0)
|
| 179 |
+
G.add_edge(0, 0)
|
| 180 |
+
G.remove_edges_from([(0, 0)])
|
| 181 |
+
G.add_edge(1, 1)
|
| 182 |
+
G.remove_node(1)
|
| 183 |
+
G.add_edge(0, 0)
|
| 184 |
+
G.add_edge(1, 1)
|
| 185 |
+
G.remove_nodes_from([0, 1])
|
| 186 |
+
|
| 187 |
+
def test_cache_reset(self):
|
| 188 |
+
G = self.K3.copy()
|
| 189 |
+
old_adj = G.adj
|
| 190 |
+
assert id(G.adj) == id(old_adj)
|
| 191 |
+
G._adj = {}
|
| 192 |
+
assert id(G.adj) != id(old_adj)
|
| 193 |
+
|
| 194 |
+
old_nodes = G.nodes
|
| 195 |
+
assert id(G.nodes) == id(old_nodes)
|
| 196 |
+
G._node = {}
|
| 197 |
+
assert id(G.nodes) != id(old_nodes)
|
| 198 |
+
|
| 199 |
+
def test_attributes_cached(self):
|
| 200 |
+
G = self.K3.copy()
|
| 201 |
+
assert id(G.nodes) == id(G.nodes)
|
| 202 |
+
assert id(G.edges) == id(G.edges)
|
| 203 |
+
assert id(G.degree) == id(G.degree)
|
| 204 |
+
assert id(G.adj) == id(G.adj)
|
| 205 |
+
|
| 206 |
+
|
| 207 |
+
class BaseAttrGraphTester(BaseGraphTester):
|
| 208 |
+
"""Tests of graph class attribute features."""
|
| 209 |
+
|
| 210 |
+
def test_weighted_degree(self):
|
| 211 |
+
G = self.Graph()
|
| 212 |
+
G.add_edge(1, 2, weight=2, other=3)
|
| 213 |
+
G.add_edge(2, 3, weight=3, other=4)
|
| 214 |
+
assert sorted(d for n, d in G.degree(weight="weight")) == [2, 3, 5]
|
| 215 |
+
assert dict(G.degree(weight="weight")) == {1: 2, 2: 5, 3: 3}
|
| 216 |
+
assert G.degree(1, weight="weight") == 2
|
| 217 |
+
assert nodes_equal((G.degree([1], weight="weight")), [(1, 2)])
|
| 218 |
+
|
| 219 |
+
assert nodes_equal((d for n, d in G.degree(weight="other")), [3, 7, 4])
|
| 220 |
+
assert dict(G.degree(weight="other")) == {1: 3, 2: 7, 3: 4}
|
| 221 |
+
assert G.degree(1, weight="other") == 3
|
| 222 |
+
assert edges_equal((G.degree([1], weight="other")), [(1, 3)])
|
| 223 |
+
|
| 224 |
+
def add_attributes(self, G):
|
| 225 |
+
G.graph["foo"] = []
|
| 226 |
+
G.nodes[0]["foo"] = []
|
| 227 |
+
G.remove_edge(1, 2)
|
| 228 |
+
ll = []
|
| 229 |
+
G.add_edge(1, 2, foo=ll)
|
| 230 |
+
G.add_edge(2, 1, foo=ll)
|
| 231 |
+
|
| 232 |
+
def test_name(self):
|
| 233 |
+
G = self.Graph(name="")
|
| 234 |
+
assert G.name == ""
|
| 235 |
+
G = self.Graph(name="test")
|
| 236 |
+
assert G.name == "test"
|
| 237 |
+
|
| 238 |
+
def test_str_unnamed(self):
|
| 239 |
+
G = self.Graph()
|
| 240 |
+
G.add_edges_from([(1, 2), (2, 3)])
|
| 241 |
+
assert str(G) == f"{type(G).__name__} with 3 nodes and 2 edges"
|
| 242 |
+
|
| 243 |
+
def test_str_named(self):
|
| 244 |
+
G = self.Graph(name="foo")
|
| 245 |
+
G.add_edges_from([(1, 2), (2, 3)])
|
| 246 |
+
assert str(G) == f"{type(G).__name__} named 'foo' with 3 nodes and 2 edges"
|
| 247 |
+
|
| 248 |
+
def test_graph_chain(self):
|
| 249 |
+
G = self.Graph([(0, 1), (1, 2)])
|
| 250 |
+
DG = G.to_directed(as_view=True)
|
| 251 |
+
SDG = DG.subgraph([0, 1])
|
| 252 |
+
RSDG = SDG.reverse(copy=False)
|
| 253 |
+
assert G is DG._graph
|
| 254 |
+
assert DG is SDG._graph
|
| 255 |
+
assert SDG is RSDG._graph
|
| 256 |
+
|
| 257 |
+
def test_copy(self):
|
| 258 |
+
G = self.Graph()
|
| 259 |
+
G.add_node(0)
|
| 260 |
+
G.add_edge(1, 2)
|
| 261 |
+
self.add_attributes(G)
|
| 262 |
+
# copy edge datadict but any container attr are same
|
| 263 |
+
H = G.copy()
|
| 264 |
+
self.graphs_equal(H, G)
|
| 265 |
+
self.different_attrdict(H, G)
|
| 266 |
+
self.shallow_copy_attrdict(H, G)
|
| 267 |
+
|
| 268 |
+
def test_class_copy(self):
|
| 269 |
+
G = self.Graph()
|
| 270 |
+
G.add_node(0)
|
| 271 |
+
G.add_edge(1, 2)
|
| 272 |
+
self.add_attributes(G)
|
| 273 |
+
# copy edge datadict but any container attr are same
|
| 274 |
+
H = G.__class__(G)
|
| 275 |
+
self.graphs_equal(H, G)
|
| 276 |
+
self.different_attrdict(H, G)
|
| 277 |
+
self.shallow_copy_attrdict(H, G)
|
| 278 |
+
|
| 279 |
+
def test_fresh_copy(self):
|
| 280 |
+
G = self.Graph()
|
| 281 |
+
G.add_node(0)
|
| 282 |
+
G.add_edge(1, 2)
|
| 283 |
+
self.add_attributes(G)
|
| 284 |
+
# copy graph structure but use fresh datadict
|
| 285 |
+
H = G.__class__()
|
| 286 |
+
H.add_nodes_from(G)
|
| 287 |
+
H.add_edges_from(G.edges())
|
| 288 |
+
assert len(G.nodes[0]) == 1
|
| 289 |
+
ddict = G.adj[1][2][0] if G.is_multigraph() else G.adj[1][2]
|
| 290 |
+
assert len(ddict) == 1
|
| 291 |
+
assert len(H.nodes[0]) == 0
|
| 292 |
+
ddict = H.adj[1][2][0] if H.is_multigraph() else H.adj[1][2]
|
| 293 |
+
assert len(ddict) == 0
|
| 294 |
+
|
| 295 |
+
def is_deepcopy(self, H, G):
|
| 296 |
+
self.graphs_equal(H, G)
|
| 297 |
+
self.different_attrdict(H, G)
|
| 298 |
+
self.deep_copy_attrdict(H, G)
|
| 299 |
+
|
| 300 |
+
def deep_copy_attrdict(self, H, G):
|
| 301 |
+
self.deepcopy_graph_attr(H, G)
|
| 302 |
+
self.deepcopy_node_attr(H, G)
|
| 303 |
+
self.deepcopy_edge_attr(H, G)
|
| 304 |
+
|
| 305 |
+
def deepcopy_graph_attr(self, H, G):
|
| 306 |
+
assert G.graph["foo"] == H.graph["foo"]
|
| 307 |
+
G.graph["foo"].append(1)
|
| 308 |
+
assert G.graph["foo"] != H.graph["foo"]
|
| 309 |
+
|
| 310 |
+
def deepcopy_node_attr(self, H, G):
|
| 311 |
+
assert G.nodes[0]["foo"] == H.nodes[0]["foo"]
|
| 312 |
+
G.nodes[0]["foo"].append(1)
|
| 313 |
+
assert G.nodes[0]["foo"] != H.nodes[0]["foo"]
|
| 314 |
+
|
| 315 |
+
def deepcopy_edge_attr(self, H, G):
|
| 316 |
+
assert G[1][2]["foo"] == H[1][2]["foo"]
|
| 317 |
+
G[1][2]["foo"].append(1)
|
| 318 |
+
assert G[1][2]["foo"] != H[1][2]["foo"]
|
| 319 |
+
|
| 320 |
+
def is_shallow_copy(self, H, G):
|
| 321 |
+
self.graphs_equal(H, G)
|
| 322 |
+
self.shallow_copy_attrdict(H, G)
|
| 323 |
+
|
| 324 |
+
def shallow_copy_attrdict(self, H, G):
|
| 325 |
+
self.shallow_copy_graph_attr(H, G)
|
| 326 |
+
self.shallow_copy_node_attr(H, G)
|
| 327 |
+
self.shallow_copy_edge_attr(H, G)
|
| 328 |
+
|
| 329 |
+
def shallow_copy_graph_attr(self, H, G):
|
| 330 |
+
assert G.graph["foo"] == H.graph["foo"]
|
| 331 |
+
G.graph["foo"].append(1)
|
| 332 |
+
assert G.graph["foo"] == H.graph["foo"]
|
| 333 |
+
|
| 334 |
+
def shallow_copy_node_attr(self, H, G):
|
| 335 |
+
assert G.nodes[0]["foo"] == H.nodes[0]["foo"]
|
| 336 |
+
G.nodes[0]["foo"].append(1)
|
| 337 |
+
assert G.nodes[0]["foo"] == H.nodes[0]["foo"]
|
| 338 |
+
|
| 339 |
+
def shallow_copy_edge_attr(self, H, G):
|
| 340 |
+
assert G[1][2]["foo"] == H[1][2]["foo"]
|
| 341 |
+
G[1][2]["foo"].append(1)
|
| 342 |
+
assert G[1][2]["foo"] == H[1][2]["foo"]
|
| 343 |
+
|
| 344 |
+
def same_attrdict(self, H, G):
|
| 345 |
+
old_foo = H[1][2]["foo"]
|
| 346 |
+
H.adj[1][2]["foo"] = "baz"
|
| 347 |
+
assert G.edges == H.edges
|
| 348 |
+
H.adj[1][2]["foo"] = old_foo
|
| 349 |
+
assert G.edges == H.edges
|
| 350 |
+
|
| 351 |
+
old_foo = H.nodes[0]["foo"]
|
| 352 |
+
H.nodes[0]["foo"] = "baz"
|
| 353 |
+
assert G.nodes == H.nodes
|
| 354 |
+
H.nodes[0]["foo"] = old_foo
|
| 355 |
+
assert G.nodes == H.nodes
|
| 356 |
+
|
| 357 |
+
def different_attrdict(self, H, G):
|
| 358 |
+
old_foo = H[1][2]["foo"]
|
| 359 |
+
H.adj[1][2]["foo"] = "baz"
|
| 360 |
+
assert G._adj != H._adj
|
| 361 |
+
H.adj[1][2]["foo"] = old_foo
|
| 362 |
+
assert G._adj == H._adj
|
| 363 |
+
|
| 364 |
+
old_foo = H.nodes[0]["foo"]
|
| 365 |
+
H.nodes[0]["foo"] = "baz"
|
| 366 |
+
assert G._node != H._node
|
| 367 |
+
H.nodes[0]["foo"] = old_foo
|
| 368 |
+
assert G._node == H._node
|
| 369 |
+
|
| 370 |
+
def graphs_equal(self, H, G):
|
| 371 |
+
assert G._adj == H._adj
|
| 372 |
+
assert G._node == H._node
|
| 373 |
+
assert G.graph == H.graph
|
| 374 |
+
assert G.name == H.name
|
| 375 |
+
if not G.is_directed() and not H.is_directed():
|
| 376 |
+
assert H._adj[1][2] is H._adj[2][1]
|
| 377 |
+
assert G._adj[1][2] is G._adj[2][1]
|
| 378 |
+
else: # at least one is directed
|
| 379 |
+
if not G.is_directed():
|
| 380 |
+
G._pred = G._adj
|
| 381 |
+
G._succ = G._adj
|
| 382 |
+
if not H.is_directed():
|
| 383 |
+
H._pred = H._adj
|
| 384 |
+
H._succ = H._adj
|
| 385 |
+
assert G._pred == H._pred
|
| 386 |
+
assert G._succ == H._succ
|
| 387 |
+
assert H._succ[1][2] is H._pred[2][1]
|
| 388 |
+
assert G._succ[1][2] is G._pred[2][1]
|
| 389 |
+
|
| 390 |
+
def test_graph_attr(self):
|
| 391 |
+
G = self.K3.copy()
|
| 392 |
+
G.graph["foo"] = "bar"
|
| 393 |
+
assert isinstance(G.graph, G.graph_attr_dict_factory)
|
| 394 |
+
assert G.graph["foo"] == "bar"
|
| 395 |
+
del G.graph["foo"]
|
| 396 |
+
assert G.graph == {}
|
| 397 |
+
H = self.Graph(foo="bar")
|
| 398 |
+
assert H.graph["foo"] == "bar"
|
| 399 |
+
|
| 400 |
+
def test_node_attr(self):
|
| 401 |
+
G = self.K3.copy()
|
| 402 |
+
G.add_node(1, foo="bar")
|
| 403 |
+
assert all(
|
| 404 |
+
isinstance(d, G.node_attr_dict_factory) for u, d in G.nodes(data=True)
|
| 405 |
+
)
|
| 406 |
+
assert nodes_equal(G.nodes(), [0, 1, 2])
|
| 407 |
+
assert nodes_equal(G.nodes(data=True), [(0, {}), (1, {"foo": "bar"}), (2, {})])
|
| 408 |
+
G.nodes[1]["foo"] = "baz"
|
| 409 |
+
assert nodes_equal(G.nodes(data=True), [(0, {}), (1, {"foo": "baz"}), (2, {})])
|
| 410 |
+
assert nodes_equal(G.nodes(data="foo"), [(0, None), (1, "baz"), (2, None)])
|
| 411 |
+
assert nodes_equal(
|
| 412 |
+
G.nodes(data="foo", default="bar"), [(0, "bar"), (1, "baz"), (2, "bar")]
|
| 413 |
+
)
|
| 414 |
+
|
| 415 |
+
def test_node_attr2(self):
|
| 416 |
+
G = self.K3.copy()
|
| 417 |
+
a = {"foo": "bar"}
|
| 418 |
+
G.add_node(3, **a)
|
| 419 |
+
assert nodes_equal(G.nodes(), [0, 1, 2, 3])
|
| 420 |
+
assert nodes_equal(
|
| 421 |
+
G.nodes(data=True), [(0, {}), (1, {}), (2, {}), (3, {"foo": "bar"})]
|
| 422 |
+
)
|
| 423 |
+
|
| 424 |
+
def test_edge_lookup(self):
|
| 425 |
+
G = self.Graph()
|
| 426 |
+
G.add_edge(1, 2, foo="bar")
|
| 427 |
+
assert edges_equal(G.edges[1, 2], {"foo": "bar"})
|
| 428 |
+
|
| 429 |
+
def test_edge_attr(self):
|
| 430 |
+
G = self.Graph()
|
| 431 |
+
G.add_edge(1, 2, foo="bar")
|
| 432 |
+
assert all(
|
| 433 |
+
isinstance(d, G.edge_attr_dict_factory) for u, v, d in G.edges(data=True)
|
| 434 |
+
)
|
| 435 |
+
assert edges_equal(G.edges(data=True), [(1, 2, {"foo": "bar"})])
|
| 436 |
+
assert edges_equal(G.edges(data="foo"), [(1, 2, "bar")])
|
| 437 |
+
|
| 438 |
+
def test_edge_attr2(self):
|
| 439 |
+
G = self.Graph()
|
| 440 |
+
G.add_edges_from([(1, 2), (3, 4)], foo="foo")
|
| 441 |
+
assert edges_equal(
|
| 442 |
+
G.edges(data=True), [(1, 2, {"foo": "foo"}), (3, 4, {"foo": "foo"})]
|
| 443 |
+
)
|
| 444 |
+
assert edges_equal(G.edges(data="foo"), [(1, 2, "foo"), (3, 4, "foo")])
|
| 445 |
+
|
| 446 |
+
def test_edge_attr3(self):
|
| 447 |
+
G = self.Graph()
|
| 448 |
+
G.add_edges_from([(1, 2, {"weight": 32}), (3, 4, {"weight": 64})], foo="foo")
|
| 449 |
+
assert edges_equal(
|
| 450 |
+
G.edges(data=True),
|
| 451 |
+
[
|
| 452 |
+
(1, 2, {"foo": "foo", "weight": 32}),
|
| 453 |
+
(3, 4, {"foo": "foo", "weight": 64}),
|
| 454 |
+
],
|
| 455 |
+
)
|
| 456 |
+
|
| 457 |
+
G.remove_edges_from([(1, 2), (3, 4)])
|
| 458 |
+
G.add_edge(1, 2, data=7, spam="bar", bar="foo")
|
| 459 |
+
assert edges_equal(
|
| 460 |
+
G.edges(data=True), [(1, 2, {"data": 7, "spam": "bar", "bar": "foo"})]
|
| 461 |
+
)
|
| 462 |
+
|
| 463 |
+
def test_edge_attr4(self):
|
| 464 |
+
G = self.Graph()
|
| 465 |
+
G.add_edge(1, 2, data=7, spam="bar", bar="foo")
|
| 466 |
+
assert edges_equal(
|
| 467 |
+
G.edges(data=True), [(1, 2, {"data": 7, "spam": "bar", "bar": "foo"})]
|
| 468 |
+
)
|
| 469 |
+
G[1][2]["data"] = 10 # OK to set data like this
|
| 470 |
+
assert edges_equal(
|
| 471 |
+
G.edges(data=True), [(1, 2, {"data": 10, "spam": "bar", "bar": "foo"})]
|
| 472 |
+
)
|
| 473 |
+
|
| 474 |
+
G.adj[1][2]["data"] = 20
|
| 475 |
+
assert edges_equal(
|
| 476 |
+
G.edges(data=True), [(1, 2, {"data": 20, "spam": "bar", "bar": "foo"})]
|
| 477 |
+
)
|
| 478 |
+
G.edges[1, 2]["data"] = 21 # another spelling, "edge"
|
| 479 |
+
assert edges_equal(
|
| 480 |
+
G.edges(data=True), [(1, 2, {"data": 21, "spam": "bar", "bar": "foo"})]
|
| 481 |
+
)
|
| 482 |
+
G.adj[1][2]["listdata"] = [20, 200]
|
| 483 |
+
G.adj[1][2]["weight"] = 20
|
| 484 |
+
dd = {
|
| 485 |
+
"data": 21,
|
| 486 |
+
"spam": "bar",
|
| 487 |
+
"bar": "foo",
|
| 488 |
+
"listdata": [20, 200],
|
| 489 |
+
"weight": 20,
|
| 490 |
+
}
|
| 491 |
+
assert edges_equal(G.edges(data=True), [(1, 2, dd)])
|
| 492 |
+
|
| 493 |
+
def test_to_undirected(self):
|
| 494 |
+
G = self.K3
|
| 495 |
+
self.add_attributes(G)
|
| 496 |
+
H = nx.Graph(G)
|
| 497 |
+
self.is_shallow_copy(H, G)
|
| 498 |
+
self.different_attrdict(H, G)
|
| 499 |
+
H = G.to_undirected()
|
| 500 |
+
self.is_deepcopy(H, G)
|
| 501 |
+
|
| 502 |
+
def test_to_directed_as_view(self):
|
| 503 |
+
H = nx.path_graph(2, create_using=self.Graph)
|
| 504 |
+
H2 = H.to_directed(as_view=True)
|
| 505 |
+
assert H is H2._graph
|
| 506 |
+
assert H2.has_edge(0, 1)
|
| 507 |
+
assert H2.has_edge(1, 0) or H.is_directed()
|
| 508 |
+
pytest.raises(nx.NetworkXError, H2.add_node, -1)
|
| 509 |
+
pytest.raises(nx.NetworkXError, H2.add_edge, 1, 2)
|
| 510 |
+
H.add_edge(1, 2)
|
| 511 |
+
assert H2.has_edge(1, 2)
|
| 512 |
+
assert H2.has_edge(2, 1) or H.is_directed()
|
| 513 |
+
|
| 514 |
+
def test_to_undirected_as_view(self):
|
| 515 |
+
H = nx.path_graph(2, create_using=self.Graph)
|
| 516 |
+
H2 = H.to_undirected(as_view=True)
|
| 517 |
+
assert H is H2._graph
|
| 518 |
+
assert H2.has_edge(0, 1)
|
| 519 |
+
assert H2.has_edge(1, 0)
|
| 520 |
+
pytest.raises(nx.NetworkXError, H2.add_node, -1)
|
| 521 |
+
pytest.raises(nx.NetworkXError, H2.add_edge, 1, 2)
|
| 522 |
+
H.add_edge(1, 2)
|
| 523 |
+
assert H2.has_edge(1, 2)
|
| 524 |
+
assert H2.has_edge(2, 1)
|
| 525 |
+
|
| 526 |
+
def test_directed_class(self):
|
| 527 |
+
G = self.Graph()
|
| 528 |
+
|
| 529 |
+
class newGraph(G.to_undirected_class()):
|
| 530 |
+
def to_directed_class(self):
|
| 531 |
+
return newDiGraph
|
| 532 |
+
|
| 533 |
+
def to_undirected_class(self):
|
| 534 |
+
return newGraph
|
| 535 |
+
|
| 536 |
+
class newDiGraph(G.to_directed_class()):
|
| 537 |
+
def to_directed_class(self):
|
| 538 |
+
return newDiGraph
|
| 539 |
+
|
| 540 |
+
def to_undirected_class(self):
|
| 541 |
+
return newGraph
|
| 542 |
+
|
| 543 |
+
G = newDiGraph() if G.is_directed() else newGraph()
|
| 544 |
+
H = G.to_directed()
|
| 545 |
+
assert isinstance(H, newDiGraph)
|
| 546 |
+
H = G.to_undirected()
|
| 547 |
+
assert isinstance(H, newGraph)
|
| 548 |
+
|
| 549 |
+
def test_to_directed(self):
|
| 550 |
+
G = self.K3
|
| 551 |
+
self.add_attributes(G)
|
| 552 |
+
H = nx.DiGraph(G)
|
| 553 |
+
self.is_shallow_copy(H, G)
|
| 554 |
+
self.different_attrdict(H, G)
|
| 555 |
+
H = G.to_directed()
|
| 556 |
+
self.is_deepcopy(H, G)
|
| 557 |
+
|
| 558 |
+
def test_subgraph(self):
|
| 559 |
+
G = self.K3
|
| 560 |
+
self.add_attributes(G)
|
| 561 |
+
H = G.subgraph([0, 1, 2, 5])
|
| 562 |
+
self.graphs_equal(H, G)
|
| 563 |
+
self.same_attrdict(H, G)
|
| 564 |
+
self.shallow_copy_attrdict(H, G)
|
| 565 |
+
|
| 566 |
+
H = G.subgraph(0)
|
| 567 |
+
assert H.adj == {0: {}}
|
| 568 |
+
H = G.subgraph([])
|
| 569 |
+
assert H.adj == {}
|
| 570 |
+
assert G.adj != {}
|
| 571 |
+
|
| 572 |
+
def test_selfloops_attr(self):
|
| 573 |
+
G = self.K3.copy()
|
| 574 |
+
G.add_edge(0, 0)
|
| 575 |
+
G.add_edge(1, 1, weight=2)
|
| 576 |
+
assert edges_equal(
|
| 577 |
+
nx.selfloop_edges(G, data=True), [(0, 0, {}), (1, 1, {"weight": 2})]
|
| 578 |
+
)
|
| 579 |
+
assert edges_equal(
|
| 580 |
+
nx.selfloop_edges(G, data="weight"), [(0, 0, None), (1, 1, 2)]
|
| 581 |
+
)
|
| 582 |
+
|
| 583 |
+
|
| 584 |
+
class TestGraph(BaseAttrGraphTester):
|
| 585 |
+
"""Tests specific to dict-of-dict-of-dict graph data structure"""
|
| 586 |
+
|
| 587 |
+
def setup_method(self):
|
| 588 |
+
self.Graph = nx.Graph
|
| 589 |
+
# build dict-of-dict-of-dict K3
|
| 590 |
+
ed1, ed2, ed3 = ({}, {}, {})
|
| 591 |
+
self.k3adj = {0: {1: ed1, 2: ed2}, 1: {0: ed1, 2: ed3}, 2: {0: ed2, 1: ed3}}
|
| 592 |
+
self.k3edges = [(0, 1), (0, 2), (1, 2)]
|
| 593 |
+
self.k3nodes = [0, 1, 2]
|
| 594 |
+
self.K3 = self.Graph()
|
| 595 |
+
self.K3._adj = self.k3adj
|
| 596 |
+
self.K3._node = {}
|
| 597 |
+
self.K3._node[0] = {}
|
| 598 |
+
self.K3._node[1] = {}
|
| 599 |
+
self.K3._node[2] = {}
|
| 600 |
+
|
| 601 |
+
def test_pickle(self):
|
| 602 |
+
G = self.K3
|
| 603 |
+
pg = pickle.loads(pickle.dumps(G, -1))
|
| 604 |
+
self.graphs_equal(pg, G)
|
| 605 |
+
pg = pickle.loads(pickle.dumps(G))
|
| 606 |
+
self.graphs_equal(pg, G)
|
| 607 |
+
|
| 608 |
+
def test_data_input(self):
|
| 609 |
+
G = self.Graph({1: [2], 2: [1]}, name="test")
|
| 610 |
+
assert G.name == "test"
|
| 611 |
+
assert sorted(G.adj.items()) == [(1, {2: {}}), (2, {1: {}})]
|
| 612 |
+
|
| 613 |
+
def test_adjacency(self):
|
| 614 |
+
G = self.K3
|
| 615 |
+
assert dict(G.adjacency()) == {
|
| 616 |
+
0: {1: {}, 2: {}},
|
| 617 |
+
1: {0: {}, 2: {}},
|
| 618 |
+
2: {0: {}, 1: {}},
|
| 619 |
+
}
|
| 620 |
+
|
| 621 |
+
def test_getitem(self):
|
| 622 |
+
G = self.K3
|
| 623 |
+
assert G.adj[0] == {1: {}, 2: {}}
|
| 624 |
+
assert G[0] == {1: {}, 2: {}}
|
| 625 |
+
with pytest.raises(KeyError):
|
| 626 |
+
G.__getitem__("j")
|
| 627 |
+
with pytest.raises(TypeError):
|
| 628 |
+
G.__getitem__(["A"])
|
| 629 |
+
|
| 630 |
+
def test_add_node(self):
|
| 631 |
+
G = self.Graph()
|
| 632 |
+
G.add_node(0)
|
| 633 |
+
assert G.adj == {0: {}}
|
| 634 |
+
# test add attributes
|
| 635 |
+
G.add_node(1, c="red")
|
| 636 |
+
G.add_node(2, c="blue")
|
| 637 |
+
G.add_node(3, c="red")
|
| 638 |
+
assert G.nodes[1]["c"] == "red"
|
| 639 |
+
assert G.nodes[2]["c"] == "blue"
|
| 640 |
+
assert G.nodes[3]["c"] == "red"
|
| 641 |
+
# test updating attributes
|
| 642 |
+
G.add_node(1, c="blue")
|
| 643 |
+
G.add_node(2, c="red")
|
| 644 |
+
G.add_node(3, c="blue")
|
| 645 |
+
assert G.nodes[1]["c"] == "blue"
|
| 646 |
+
assert G.nodes[2]["c"] == "red"
|
| 647 |
+
assert G.nodes[3]["c"] == "blue"
|
| 648 |
+
|
| 649 |
+
def test_add_nodes_from(self):
|
| 650 |
+
G = self.Graph()
|
| 651 |
+
G.add_nodes_from([0, 1, 2])
|
| 652 |
+
assert G.adj == {0: {}, 1: {}, 2: {}}
|
| 653 |
+
# test add attributes
|
| 654 |
+
G.add_nodes_from([0, 1, 2], c="red")
|
| 655 |
+
assert G.nodes[0]["c"] == "red"
|
| 656 |
+
assert G.nodes[2]["c"] == "red"
|
| 657 |
+
# test that attribute dicts are not the same
|
| 658 |
+
assert G.nodes[0] is not G.nodes[1]
|
| 659 |
+
# test updating attributes
|
| 660 |
+
G.add_nodes_from([0, 1, 2], c="blue")
|
| 661 |
+
assert G.nodes[0]["c"] == "blue"
|
| 662 |
+
assert G.nodes[2]["c"] == "blue"
|
| 663 |
+
assert G.nodes[0] is not G.nodes[1]
|
| 664 |
+
# test tuple input
|
| 665 |
+
H = self.Graph()
|
| 666 |
+
H.add_nodes_from(G.nodes(data=True))
|
| 667 |
+
assert H.nodes[0]["c"] == "blue"
|
| 668 |
+
assert H.nodes[2]["c"] == "blue"
|
| 669 |
+
assert H.nodes[0] is not H.nodes[1]
|
| 670 |
+
# specific overrides general
|
| 671 |
+
H.add_nodes_from([0, (1, {"c": "green"}), (3, {"c": "cyan"})], c="red")
|
| 672 |
+
assert H.nodes[0]["c"] == "red"
|
| 673 |
+
assert H.nodes[1]["c"] == "green"
|
| 674 |
+
assert H.nodes[2]["c"] == "blue"
|
| 675 |
+
assert H.nodes[3]["c"] == "cyan"
|
| 676 |
+
|
| 677 |
+
def test_remove_node(self):
|
| 678 |
+
G = self.K3.copy()
|
| 679 |
+
G.remove_node(0)
|
| 680 |
+
assert G.adj == {1: {2: {}}, 2: {1: {}}}
|
| 681 |
+
with pytest.raises(nx.NetworkXError):
|
| 682 |
+
G.remove_node(-1)
|
| 683 |
+
|
| 684 |
+
# generator here to implement list,set,string...
|
| 685 |
+
|
| 686 |
+
def test_remove_nodes_from(self):
|
| 687 |
+
G = self.K3.copy()
|
| 688 |
+
G.remove_nodes_from([0, 1])
|
| 689 |
+
assert G.adj == {2: {}}
|
| 690 |
+
G.remove_nodes_from([-1]) # silent fail
|
| 691 |
+
|
| 692 |
+
def test_add_edge(self):
|
| 693 |
+
G = self.Graph()
|
| 694 |
+
G.add_edge(0, 1)
|
| 695 |
+
assert G.adj == {0: {1: {}}, 1: {0: {}}}
|
| 696 |
+
G = self.Graph()
|
| 697 |
+
G.add_edge(*(0, 1))
|
| 698 |
+
assert G.adj == {0: {1: {}}, 1: {0: {}}}
|
| 699 |
+
G = self.Graph()
|
| 700 |
+
with pytest.raises(ValueError):
|
| 701 |
+
G.add_edge(None, "anything")
|
| 702 |
+
|
| 703 |
+
def test_add_edges_from(self):
|
| 704 |
+
G = self.Graph()
|
| 705 |
+
G.add_edges_from([(0, 1), (0, 2, {"weight": 3})])
|
| 706 |
+
assert G.adj == {
|
| 707 |
+
0: {1: {}, 2: {"weight": 3}},
|
| 708 |
+
1: {0: {}},
|
| 709 |
+
2: {0: {"weight": 3}},
|
| 710 |
+
}
|
| 711 |
+
G = self.Graph()
|
| 712 |
+
G.add_edges_from([(0, 1), (0, 2, {"weight": 3}), (1, 2, {"data": 4})], data=2)
|
| 713 |
+
assert G.adj == {
|
| 714 |
+
0: {1: {"data": 2}, 2: {"weight": 3, "data": 2}},
|
| 715 |
+
1: {0: {"data": 2}, 2: {"data": 4}},
|
| 716 |
+
2: {0: {"weight": 3, "data": 2}, 1: {"data": 4}},
|
| 717 |
+
}
|
| 718 |
+
|
| 719 |
+
with pytest.raises(nx.NetworkXError):
|
| 720 |
+
G.add_edges_from([(0,)]) # too few in tuple
|
| 721 |
+
with pytest.raises(nx.NetworkXError):
|
| 722 |
+
G.add_edges_from([(0, 1, 2, 3)]) # too many in tuple
|
| 723 |
+
with pytest.raises(TypeError):
|
| 724 |
+
G.add_edges_from([0]) # not a tuple
|
| 725 |
+
with pytest.raises(ValueError):
|
| 726 |
+
G.add_edges_from([(None, 3), (3, 2)]) # None cannot be a node
|
| 727 |
+
|
| 728 |
+
def test_remove_edge(self):
|
| 729 |
+
G = self.K3.copy()
|
| 730 |
+
G.remove_edge(0, 1)
|
| 731 |
+
assert G.adj == {0: {2: {}}, 1: {2: {}}, 2: {0: {}, 1: {}}}
|
| 732 |
+
with pytest.raises(nx.NetworkXError):
|
| 733 |
+
G.remove_edge(-1, 0)
|
| 734 |
+
|
| 735 |
+
def test_remove_edges_from(self):
|
| 736 |
+
G = self.K3.copy()
|
| 737 |
+
G.remove_edges_from([(0, 1)])
|
| 738 |
+
assert G.adj == {0: {2: {}}, 1: {2: {}}, 2: {0: {}, 1: {}}}
|
| 739 |
+
G.remove_edges_from([(0, 0)]) # silent fail
|
| 740 |
+
|
| 741 |
+
def test_clear(self):
|
| 742 |
+
G = self.K3.copy()
|
| 743 |
+
G.graph["name"] = "K3"
|
| 744 |
+
G.clear()
|
| 745 |
+
assert list(G.nodes) == []
|
| 746 |
+
assert G.adj == {}
|
| 747 |
+
assert G.graph == {}
|
| 748 |
+
|
| 749 |
+
def test_clear_edges(self):
|
| 750 |
+
G = self.K3.copy()
|
| 751 |
+
G.graph["name"] = "K3"
|
| 752 |
+
nodes = list(G.nodes)
|
| 753 |
+
G.clear_edges()
|
| 754 |
+
assert list(G.nodes) == nodes
|
| 755 |
+
assert G.adj == {0: {}, 1: {}, 2: {}}
|
| 756 |
+
assert list(G.edges) == []
|
| 757 |
+
assert G.graph["name"] == "K3"
|
| 758 |
+
|
| 759 |
+
def test_edges_data(self):
|
| 760 |
+
G = self.K3
|
| 761 |
+
all_edges = [(0, 1, {}), (0, 2, {}), (1, 2, {})]
|
| 762 |
+
assert edges_equal(G.edges(data=True), all_edges)
|
| 763 |
+
assert edges_equal(G.edges(0, data=True), [(0, 1, {}), (0, 2, {})])
|
| 764 |
+
assert edges_equal(G.edges([0, 1], data=True), all_edges)
|
| 765 |
+
with pytest.raises(nx.NetworkXError):
|
| 766 |
+
G.edges(-1, True)
|
| 767 |
+
|
| 768 |
+
def test_get_edge_data(self):
|
| 769 |
+
G = self.K3.copy()
|
| 770 |
+
assert G.get_edge_data(0, 1) == {}
|
| 771 |
+
assert G[0][1] == {}
|
| 772 |
+
assert G.get_edge_data(10, 20) is None
|
| 773 |
+
assert G.get_edge_data(-1, 0) is None
|
| 774 |
+
assert G.get_edge_data(-1, 0, default=1) == 1
|
| 775 |
+
|
| 776 |
+
def test_update(self):
|
| 777 |
+
# specify both edges and nodes
|
| 778 |
+
G = self.K3.copy()
|
| 779 |
+
G.update(nodes=[3, (4, {"size": 2})], edges=[(4, 5), (6, 7, {"weight": 2})])
|
| 780 |
+
nlist = [
|
| 781 |
+
(0, {}),
|
| 782 |
+
(1, {}),
|
| 783 |
+
(2, {}),
|
| 784 |
+
(3, {}),
|
| 785 |
+
(4, {"size": 2}),
|
| 786 |
+
(5, {}),
|
| 787 |
+
(6, {}),
|
| 788 |
+
(7, {}),
|
| 789 |
+
]
|
| 790 |
+
assert sorted(G.nodes.data()) == nlist
|
| 791 |
+
if G.is_directed():
|
| 792 |
+
elist = [
|
| 793 |
+
(0, 1, {}),
|
| 794 |
+
(0, 2, {}),
|
| 795 |
+
(1, 0, {}),
|
| 796 |
+
(1, 2, {}),
|
| 797 |
+
(2, 0, {}),
|
| 798 |
+
(2, 1, {}),
|
| 799 |
+
(4, 5, {}),
|
| 800 |
+
(6, 7, {"weight": 2}),
|
| 801 |
+
]
|
| 802 |
+
else:
|
| 803 |
+
elist = [
|
| 804 |
+
(0, 1, {}),
|
| 805 |
+
(0, 2, {}),
|
| 806 |
+
(1, 2, {}),
|
| 807 |
+
(4, 5, {}),
|
| 808 |
+
(6, 7, {"weight": 2}),
|
| 809 |
+
]
|
| 810 |
+
assert sorted(G.edges.data()) == elist
|
| 811 |
+
assert G.graph == {}
|
| 812 |
+
|
| 813 |
+
# no keywords -- order is edges, nodes
|
| 814 |
+
G = self.K3.copy()
|
| 815 |
+
G.update([(4, 5), (6, 7, {"weight": 2})], [3, (4, {"size": 2})])
|
| 816 |
+
assert sorted(G.nodes.data()) == nlist
|
| 817 |
+
assert sorted(G.edges.data()) == elist
|
| 818 |
+
assert G.graph == {}
|
| 819 |
+
|
| 820 |
+
# update using only a graph
|
| 821 |
+
G = self.Graph()
|
| 822 |
+
G.graph["foo"] = "bar"
|
| 823 |
+
G.add_node(2, data=4)
|
| 824 |
+
G.add_edge(0, 1, weight=0.5)
|
| 825 |
+
GG = G.copy()
|
| 826 |
+
H = self.Graph()
|
| 827 |
+
GG.update(H)
|
| 828 |
+
assert graphs_equal(G, GG)
|
| 829 |
+
H.update(G)
|
| 830 |
+
assert graphs_equal(H, G)
|
| 831 |
+
|
| 832 |
+
# update nodes only
|
| 833 |
+
H = self.Graph()
|
| 834 |
+
H.update(nodes=[3, 4])
|
| 835 |
+
assert H.nodes ^ {3, 4} == set()
|
| 836 |
+
assert H.size() == 0
|
| 837 |
+
|
| 838 |
+
# update edges only
|
| 839 |
+
H = self.Graph()
|
| 840 |
+
H.update(edges=[(3, 4)])
|
| 841 |
+
assert sorted(H.edges.data()) == [(3, 4, {})]
|
| 842 |
+
assert H.size() == 1
|
| 843 |
+
|
| 844 |
+
# No inputs -> exception
|
| 845 |
+
with pytest.raises(nx.NetworkXError):
|
| 846 |
+
nx.Graph().update()
|
| 847 |
+
|
| 848 |
+
|
| 849 |
+
class TestEdgeSubgraph:
|
| 850 |
+
"""Unit tests for the :meth:`Graph.edge_subgraph` method."""
|
| 851 |
+
|
| 852 |
+
def setup_method(self):
|
| 853 |
+
# Create a path graph on five nodes.
|
| 854 |
+
G = nx.path_graph(5)
|
| 855 |
+
# Add some node, edge, and graph attributes.
|
| 856 |
+
for i in range(5):
|
| 857 |
+
G.nodes[i]["name"] = f"node{i}"
|
| 858 |
+
G.edges[0, 1]["name"] = "edge01"
|
| 859 |
+
G.edges[3, 4]["name"] = "edge34"
|
| 860 |
+
G.graph["name"] = "graph"
|
| 861 |
+
# Get the subgraph induced by the first and last edges.
|
| 862 |
+
self.G = G
|
| 863 |
+
self.H = G.edge_subgraph([(0, 1), (3, 4)])
|
| 864 |
+
|
| 865 |
+
def test_correct_nodes(self):
|
| 866 |
+
"""Tests that the subgraph has the correct nodes."""
|
| 867 |
+
assert [0, 1, 3, 4] == sorted(self.H.nodes())
|
| 868 |
+
|
| 869 |
+
def test_correct_edges(self):
|
| 870 |
+
"""Tests that the subgraph has the correct edges."""
|
| 871 |
+
assert [(0, 1, "edge01"), (3, 4, "edge34")] == sorted(self.H.edges(data="name"))
|
| 872 |
+
|
| 873 |
+
def test_add_node(self):
|
| 874 |
+
"""Tests that adding a node to the original graph does not
|
| 875 |
+
affect the nodes of the subgraph.
|
| 876 |
+
|
| 877 |
+
"""
|
| 878 |
+
self.G.add_node(5)
|
| 879 |
+
assert [0, 1, 3, 4] == sorted(self.H.nodes())
|
| 880 |
+
|
| 881 |
+
def test_remove_node(self):
|
| 882 |
+
"""Tests that removing a node in the original graph does
|
| 883 |
+
affect the nodes of the subgraph.
|
| 884 |
+
|
| 885 |
+
"""
|
| 886 |
+
self.G.remove_node(0)
|
| 887 |
+
assert [1, 3, 4] == sorted(self.H.nodes())
|
| 888 |
+
|
| 889 |
+
def test_node_attr_dict(self):
|
| 890 |
+
"""Tests that the node attribute dictionary of the two graphs is
|
| 891 |
+
the same object.
|
| 892 |
+
|
| 893 |
+
"""
|
| 894 |
+
for v in self.H:
|
| 895 |
+
assert self.G.nodes[v] == self.H.nodes[v]
|
| 896 |
+
# Making a change to G should make a change in H and vice versa.
|
| 897 |
+
self.G.nodes[0]["name"] = "foo"
|
| 898 |
+
assert self.G.nodes[0] == self.H.nodes[0]
|
| 899 |
+
self.H.nodes[1]["name"] = "bar"
|
| 900 |
+
assert self.G.nodes[1] == self.H.nodes[1]
|
| 901 |
+
|
| 902 |
+
def test_edge_attr_dict(self):
|
| 903 |
+
"""Tests that the edge attribute dictionary of the two graphs is
|
| 904 |
+
the same object.
|
| 905 |
+
|
| 906 |
+
"""
|
| 907 |
+
for u, v in self.H.edges():
|
| 908 |
+
assert self.G.edges[u, v] == self.H.edges[u, v]
|
| 909 |
+
# Making a change to G should make a change in H and vice versa.
|
| 910 |
+
self.G.edges[0, 1]["name"] = "foo"
|
| 911 |
+
assert self.G.edges[0, 1]["name"] == self.H.edges[0, 1]["name"]
|
| 912 |
+
self.H.edges[3, 4]["name"] = "bar"
|
| 913 |
+
assert self.G.edges[3, 4]["name"] == self.H.edges[3, 4]["name"]
|
| 914 |
+
|
| 915 |
+
def test_graph_attr_dict(self):
|
| 916 |
+
"""Tests that the graph attribute dictionary of the two graphs
|
| 917 |
+
is the same object.
|
| 918 |
+
|
| 919 |
+
"""
|
| 920 |
+
assert self.G.graph is self.H.graph
|
minigpt2/lib/python3.10/site-packages/networkx/classes/tests/test_graphviews.py
ADDED
|
@@ -0,0 +1,350 @@
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|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
from networkx.utils import edges_equal, nodes_equal
|
| 5 |
+
|
| 6 |
+
# Note: SubGraph views are not tested here. They have their own testing file
|
| 7 |
+
|
| 8 |
+
|
| 9 |
+
class TestReverseView:
|
| 10 |
+
def setup_method(self):
|
| 11 |
+
self.G = nx.path_graph(9, create_using=nx.DiGraph())
|
| 12 |
+
self.rv = nx.reverse_view(self.G)
|
| 13 |
+
|
| 14 |
+
def test_pickle(self):
|
| 15 |
+
import pickle
|
| 16 |
+
|
| 17 |
+
rv = self.rv
|
| 18 |
+
prv = pickle.loads(pickle.dumps(rv, -1))
|
| 19 |
+
assert rv._node == prv._node
|
| 20 |
+
assert rv._adj == prv._adj
|
| 21 |
+
assert rv.graph == prv.graph
|
| 22 |
+
|
| 23 |
+
def test_contains(self):
|
| 24 |
+
assert (2, 3) in self.G.edges
|
| 25 |
+
assert (3, 2) not in self.G.edges
|
| 26 |
+
assert (2, 3) not in self.rv.edges
|
| 27 |
+
assert (3, 2) in self.rv.edges
|
| 28 |
+
|
| 29 |
+
def test_iter(self):
|
| 30 |
+
expected = sorted(tuple(reversed(e)) for e in self.G.edges)
|
| 31 |
+
assert sorted(self.rv.edges) == expected
|
| 32 |
+
|
| 33 |
+
def test_exceptions(self):
|
| 34 |
+
G = nx.Graph()
|
| 35 |
+
pytest.raises(nx.NetworkXNotImplemented, nx.reverse_view, G)
|
| 36 |
+
|
| 37 |
+
def test_subclass(self):
|
| 38 |
+
class MyGraph(nx.DiGraph):
|
| 39 |
+
def my_method(self):
|
| 40 |
+
return "me"
|
| 41 |
+
|
| 42 |
+
def to_directed_class(self):
|
| 43 |
+
return MyGraph()
|
| 44 |
+
|
| 45 |
+
M = MyGraph()
|
| 46 |
+
M.add_edge(1, 2)
|
| 47 |
+
RM = nx.reverse_view(M)
|
| 48 |
+
print("RM class", RM.__class__)
|
| 49 |
+
RMC = RM.copy()
|
| 50 |
+
print("RMC class", RMC.__class__)
|
| 51 |
+
print(RMC.edges)
|
| 52 |
+
assert RMC.has_edge(2, 1)
|
| 53 |
+
assert RMC.my_method() == "me"
|
| 54 |
+
|
| 55 |
+
|
| 56 |
+
class TestMultiReverseView:
|
| 57 |
+
def setup_method(self):
|
| 58 |
+
self.G = nx.path_graph(9, create_using=nx.MultiDiGraph())
|
| 59 |
+
self.G.add_edge(4, 5)
|
| 60 |
+
self.rv = nx.reverse_view(self.G)
|
| 61 |
+
|
| 62 |
+
def test_pickle(self):
|
| 63 |
+
import pickle
|
| 64 |
+
|
| 65 |
+
rv = self.rv
|
| 66 |
+
prv = pickle.loads(pickle.dumps(rv, -1))
|
| 67 |
+
assert rv._node == prv._node
|
| 68 |
+
assert rv._adj == prv._adj
|
| 69 |
+
assert rv.graph == prv.graph
|
| 70 |
+
|
| 71 |
+
def test_contains(self):
|
| 72 |
+
assert (2, 3, 0) in self.G.edges
|
| 73 |
+
assert (3, 2, 0) not in self.G.edges
|
| 74 |
+
assert (2, 3, 0) not in self.rv.edges
|
| 75 |
+
assert (3, 2, 0) in self.rv.edges
|
| 76 |
+
assert (5, 4, 1) in self.rv.edges
|
| 77 |
+
assert (4, 5, 1) not in self.rv.edges
|
| 78 |
+
|
| 79 |
+
def test_iter(self):
|
| 80 |
+
expected = sorted((v, u, k) for u, v, k in self.G.edges)
|
| 81 |
+
assert sorted(self.rv.edges) == expected
|
| 82 |
+
|
| 83 |
+
def test_exceptions(self):
|
| 84 |
+
MG = nx.MultiGraph(self.G)
|
| 85 |
+
pytest.raises(nx.NetworkXNotImplemented, nx.reverse_view, MG)
|
| 86 |
+
|
| 87 |
+
|
| 88 |
+
def test_generic_multitype():
|
| 89 |
+
nxg = nx.graphviews
|
| 90 |
+
G = nx.DiGraph([(1, 2)])
|
| 91 |
+
with pytest.raises(nx.NetworkXError):
|
| 92 |
+
nxg.generic_graph_view(G, create_using=nx.MultiGraph)
|
| 93 |
+
G = nx.MultiDiGraph([(1, 2)])
|
| 94 |
+
with pytest.raises(nx.NetworkXError):
|
| 95 |
+
nxg.generic_graph_view(G, create_using=nx.DiGraph)
|
| 96 |
+
|
| 97 |
+
|
| 98 |
+
class TestToDirected:
|
| 99 |
+
def setup_method(self):
|
| 100 |
+
self.G = nx.path_graph(9)
|
| 101 |
+
self.dv = nx.to_directed(self.G)
|
| 102 |
+
self.MG = nx.path_graph(9, create_using=nx.MultiGraph())
|
| 103 |
+
self.Mdv = nx.to_directed(self.MG)
|
| 104 |
+
|
| 105 |
+
def test_directed(self):
|
| 106 |
+
assert not self.G.is_directed()
|
| 107 |
+
assert self.dv.is_directed()
|
| 108 |
+
|
| 109 |
+
def test_already_directed(self):
|
| 110 |
+
dd = nx.to_directed(self.dv)
|
| 111 |
+
Mdd = nx.to_directed(self.Mdv)
|
| 112 |
+
assert edges_equal(dd.edges, self.dv.edges)
|
| 113 |
+
assert edges_equal(Mdd.edges, self.Mdv.edges)
|
| 114 |
+
|
| 115 |
+
def test_pickle(self):
|
| 116 |
+
import pickle
|
| 117 |
+
|
| 118 |
+
dv = self.dv
|
| 119 |
+
pdv = pickle.loads(pickle.dumps(dv, -1))
|
| 120 |
+
assert dv._node == pdv._node
|
| 121 |
+
assert dv._succ == pdv._succ
|
| 122 |
+
assert dv._pred == pdv._pred
|
| 123 |
+
assert dv.graph == pdv.graph
|
| 124 |
+
|
| 125 |
+
def test_contains(self):
|
| 126 |
+
assert (2, 3) in self.G.edges
|
| 127 |
+
assert (3, 2) in self.G.edges
|
| 128 |
+
assert (2, 3) in self.dv.edges
|
| 129 |
+
assert (3, 2) in self.dv.edges
|
| 130 |
+
|
| 131 |
+
def test_iter(self):
|
| 132 |
+
revd = [tuple(reversed(e)) for e in self.G.edges]
|
| 133 |
+
expected = sorted(list(self.G.edges) + revd)
|
| 134 |
+
assert sorted(self.dv.edges) == expected
|
| 135 |
+
|
| 136 |
+
|
| 137 |
+
class TestToUndirected:
|
| 138 |
+
def setup_method(self):
|
| 139 |
+
self.DG = nx.path_graph(9, create_using=nx.DiGraph())
|
| 140 |
+
self.uv = nx.to_undirected(self.DG)
|
| 141 |
+
self.MDG = nx.path_graph(9, create_using=nx.MultiDiGraph())
|
| 142 |
+
self.Muv = nx.to_undirected(self.MDG)
|
| 143 |
+
|
| 144 |
+
def test_directed(self):
|
| 145 |
+
assert self.DG.is_directed()
|
| 146 |
+
assert not self.uv.is_directed()
|
| 147 |
+
|
| 148 |
+
def test_already_directed(self):
|
| 149 |
+
uu = nx.to_undirected(self.uv)
|
| 150 |
+
Muu = nx.to_undirected(self.Muv)
|
| 151 |
+
assert edges_equal(uu.edges, self.uv.edges)
|
| 152 |
+
assert edges_equal(Muu.edges, self.Muv.edges)
|
| 153 |
+
|
| 154 |
+
def test_pickle(self):
|
| 155 |
+
import pickle
|
| 156 |
+
|
| 157 |
+
uv = self.uv
|
| 158 |
+
puv = pickle.loads(pickle.dumps(uv, -1))
|
| 159 |
+
assert uv._node == puv._node
|
| 160 |
+
assert uv._adj == puv._adj
|
| 161 |
+
assert uv.graph == puv.graph
|
| 162 |
+
assert hasattr(uv, "_graph")
|
| 163 |
+
|
| 164 |
+
def test_contains(self):
|
| 165 |
+
assert (2, 3) in self.DG.edges
|
| 166 |
+
assert (3, 2) not in self.DG.edges
|
| 167 |
+
assert (2, 3) in self.uv.edges
|
| 168 |
+
assert (3, 2) in self.uv.edges
|
| 169 |
+
|
| 170 |
+
def test_iter(self):
|
| 171 |
+
expected = sorted(self.DG.edges)
|
| 172 |
+
assert sorted(self.uv.edges) == expected
|
| 173 |
+
|
| 174 |
+
|
| 175 |
+
class TestChainsOfViews:
|
| 176 |
+
@classmethod
|
| 177 |
+
def setup_class(cls):
|
| 178 |
+
cls.G = nx.path_graph(9)
|
| 179 |
+
cls.DG = nx.path_graph(9, create_using=nx.DiGraph())
|
| 180 |
+
cls.MG = nx.path_graph(9, create_using=nx.MultiGraph())
|
| 181 |
+
cls.MDG = nx.path_graph(9, create_using=nx.MultiDiGraph())
|
| 182 |
+
cls.Gv = nx.to_undirected(cls.DG)
|
| 183 |
+
cls.DGv = nx.to_directed(cls.G)
|
| 184 |
+
cls.MGv = nx.to_undirected(cls.MDG)
|
| 185 |
+
cls.MDGv = nx.to_directed(cls.MG)
|
| 186 |
+
cls.Rv = cls.DG.reverse()
|
| 187 |
+
cls.MRv = cls.MDG.reverse()
|
| 188 |
+
cls.graphs = [
|
| 189 |
+
cls.G,
|
| 190 |
+
cls.DG,
|
| 191 |
+
cls.MG,
|
| 192 |
+
cls.MDG,
|
| 193 |
+
cls.Gv,
|
| 194 |
+
cls.DGv,
|
| 195 |
+
cls.MGv,
|
| 196 |
+
cls.MDGv,
|
| 197 |
+
cls.Rv,
|
| 198 |
+
cls.MRv,
|
| 199 |
+
]
|
| 200 |
+
for G in cls.graphs:
|
| 201 |
+
G.edges, G.nodes, G.degree
|
| 202 |
+
|
| 203 |
+
def test_pickle(self):
|
| 204 |
+
import pickle
|
| 205 |
+
|
| 206 |
+
for G in self.graphs:
|
| 207 |
+
H = pickle.loads(pickle.dumps(G, -1))
|
| 208 |
+
assert edges_equal(H.edges, G.edges)
|
| 209 |
+
assert nodes_equal(H.nodes, G.nodes)
|
| 210 |
+
|
| 211 |
+
def test_subgraph_of_subgraph(self):
|
| 212 |
+
SGv = nx.subgraph(self.G, range(3, 7))
|
| 213 |
+
SDGv = nx.subgraph(self.DG, range(3, 7))
|
| 214 |
+
SMGv = nx.subgraph(self.MG, range(3, 7))
|
| 215 |
+
SMDGv = nx.subgraph(self.MDG, range(3, 7))
|
| 216 |
+
for G in self.graphs + [SGv, SDGv, SMGv, SMDGv]:
|
| 217 |
+
SG = nx.induced_subgraph(G, [4, 5, 6])
|
| 218 |
+
assert list(SG) == [4, 5, 6]
|
| 219 |
+
SSG = SG.subgraph([6, 7])
|
| 220 |
+
assert list(SSG) == [6]
|
| 221 |
+
# subgraph-subgraph chain is short-cut in base class method
|
| 222 |
+
assert SSG._graph is G
|
| 223 |
+
|
| 224 |
+
def test_restricted_induced_subgraph_chains(self):
|
| 225 |
+
"""Test subgraph chains that both restrict and show nodes/edges.
|
| 226 |
+
|
| 227 |
+
A restricted_view subgraph should allow induced subgraphs using
|
| 228 |
+
G.subgraph that automagically without a chain (meaning the result
|
| 229 |
+
is a subgraph view of the original graph not a subgraph-of-subgraph.
|
| 230 |
+
"""
|
| 231 |
+
hide_nodes = [3, 4, 5]
|
| 232 |
+
hide_edges = [(6, 7)]
|
| 233 |
+
RG = nx.restricted_view(self.G, hide_nodes, hide_edges)
|
| 234 |
+
nodes = [4, 5, 6, 7, 8]
|
| 235 |
+
SG = nx.induced_subgraph(RG, nodes)
|
| 236 |
+
SSG = RG.subgraph(nodes)
|
| 237 |
+
assert RG._graph is self.G
|
| 238 |
+
assert SSG._graph is self.G
|
| 239 |
+
assert SG._graph is RG
|
| 240 |
+
assert edges_equal(SG.edges, SSG.edges)
|
| 241 |
+
# should be same as morphing the graph
|
| 242 |
+
CG = self.G.copy()
|
| 243 |
+
CG.remove_nodes_from(hide_nodes)
|
| 244 |
+
CG.remove_edges_from(hide_edges)
|
| 245 |
+
assert edges_equal(CG.edges(nodes), SSG.edges)
|
| 246 |
+
CG.remove_nodes_from([0, 1, 2, 3])
|
| 247 |
+
assert edges_equal(CG.edges, SSG.edges)
|
| 248 |
+
# switch order: subgraph first, then restricted view
|
| 249 |
+
SSSG = self.G.subgraph(nodes)
|
| 250 |
+
RSG = nx.restricted_view(SSSG, hide_nodes, hide_edges)
|
| 251 |
+
assert RSG._graph is not self.G
|
| 252 |
+
assert edges_equal(RSG.edges, CG.edges)
|
| 253 |
+
|
| 254 |
+
def test_subgraph_copy(self):
|
| 255 |
+
for origG in self.graphs:
|
| 256 |
+
G = nx.Graph(origG)
|
| 257 |
+
SG = G.subgraph([4, 5, 6])
|
| 258 |
+
H = SG.copy()
|
| 259 |
+
assert type(G) == type(H)
|
| 260 |
+
|
| 261 |
+
def test_subgraph_todirected(self):
|
| 262 |
+
SG = nx.induced_subgraph(self.G, [4, 5, 6])
|
| 263 |
+
SSG = SG.to_directed()
|
| 264 |
+
assert sorted(SSG) == [4, 5, 6]
|
| 265 |
+
assert sorted(SSG.edges) == [(4, 5), (5, 4), (5, 6), (6, 5)]
|
| 266 |
+
|
| 267 |
+
def test_subgraph_toundirected(self):
|
| 268 |
+
SG = nx.induced_subgraph(self.G, [4, 5, 6])
|
| 269 |
+
SSG = SG.to_undirected()
|
| 270 |
+
assert list(SSG) == [4, 5, 6]
|
| 271 |
+
assert sorted(SSG.edges) == [(4, 5), (5, 6)]
|
| 272 |
+
|
| 273 |
+
def test_reverse_subgraph_toundirected(self):
|
| 274 |
+
G = self.DG.reverse(copy=False)
|
| 275 |
+
SG = G.subgraph([4, 5, 6])
|
| 276 |
+
SSG = SG.to_undirected()
|
| 277 |
+
assert list(SSG) == [4, 5, 6]
|
| 278 |
+
assert sorted(SSG.edges) == [(4, 5), (5, 6)]
|
| 279 |
+
|
| 280 |
+
def test_reverse_reverse_copy(self):
|
| 281 |
+
G = self.DG.reverse(copy=False)
|
| 282 |
+
H = G.reverse(copy=True)
|
| 283 |
+
assert H.nodes == self.DG.nodes
|
| 284 |
+
assert H.edges == self.DG.edges
|
| 285 |
+
G = self.MDG.reverse(copy=False)
|
| 286 |
+
H = G.reverse(copy=True)
|
| 287 |
+
assert H.nodes == self.MDG.nodes
|
| 288 |
+
assert H.edges == self.MDG.edges
|
| 289 |
+
|
| 290 |
+
def test_subgraph_edgesubgraph_toundirected(self):
|
| 291 |
+
G = self.G.copy()
|
| 292 |
+
SG = G.subgraph([4, 5, 6])
|
| 293 |
+
SSG = SG.edge_subgraph([(4, 5), (5, 4)])
|
| 294 |
+
USSG = SSG.to_undirected()
|
| 295 |
+
assert list(USSG) == [4, 5]
|
| 296 |
+
assert sorted(USSG.edges) == [(4, 5)]
|
| 297 |
+
|
| 298 |
+
def test_copy_subgraph(self):
|
| 299 |
+
G = self.G.copy()
|
| 300 |
+
SG = G.subgraph([4, 5, 6])
|
| 301 |
+
CSG = SG.copy(as_view=True)
|
| 302 |
+
DCSG = SG.copy(as_view=False)
|
| 303 |
+
assert hasattr(CSG, "_graph") # is a view
|
| 304 |
+
assert not hasattr(DCSG, "_graph") # not a view
|
| 305 |
+
|
| 306 |
+
def test_copy_disubgraph(self):
|
| 307 |
+
G = self.DG.copy()
|
| 308 |
+
SG = G.subgraph([4, 5, 6])
|
| 309 |
+
CSG = SG.copy(as_view=True)
|
| 310 |
+
DCSG = SG.copy(as_view=False)
|
| 311 |
+
assert hasattr(CSG, "_graph") # is a view
|
| 312 |
+
assert not hasattr(DCSG, "_graph") # not a view
|
| 313 |
+
|
| 314 |
+
def test_copy_multidisubgraph(self):
|
| 315 |
+
G = self.MDG.copy()
|
| 316 |
+
SG = G.subgraph([4, 5, 6])
|
| 317 |
+
CSG = SG.copy(as_view=True)
|
| 318 |
+
DCSG = SG.copy(as_view=False)
|
| 319 |
+
assert hasattr(CSG, "_graph") # is a view
|
| 320 |
+
assert not hasattr(DCSG, "_graph") # not a view
|
| 321 |
+
|
| 322 |
+
def test_copy_multisubgraph(self):
|
| 323 |
+
G = self.MG.copy()
|
| 324 |
+
SG = G.subgraph([4, 5, 6])
|
| 325 |
+
CSG = SG.copy(as_view=True)
|
| 326 |
+
DCSG = SG.copy(as_view=False)
|
| 327 |
+
assert hasattr(CSG, "_graph") # is a view
|
| 328 |
+
assert not hasattr(DCSG, "_graph") # not a view
|
| 329 |
+
|
| 330 |
+
def test_copy_of_view(self):
|
| 331 |
+
G = nx.MultiGraph(self.MGv)
|
| 332 |
+
assert G.__class__.__name__ == "MultiGraph"
|
| 333 |
+
G = G.copy(as_view=True)
|
| 334 |
+
assert G.__class__.__name__ == "MultiGraph"
|
| 335 |
+
|
| 336 |
+
def test_subclass(self):
|
| 337 |
+
class MyGraph(nx.DiGraph):
|
| 338 |
+
def my_method(self):
|
| 339 |
+
return "me"
|
| 340 |
+
|
| 341 |
+
def to_directed_class(self):
|
| 342 |
+
return MyGraph()
|
| 343 |
+
|
| 344 |
+
for origG in self.graphs:
|
| 345 |
+
G = MyGraph(origG)
|
| 346 |
+
SG = G.subgraph([4, 5, 6])
|
| 347 |
+
H = SG.copy()
|
| 348 |
+
assert SG.my_method() == "me"
|
| 349 |
+
assert H.my_method() == "me"
|
| 350 |
+
assert 3 not in H or 3 in SG
|
minigpt2/lib/python3.10/site-packages/networkx/classes/tests/test_multigraph.py
ADDED
|
@@ -0,0 +1,528 @@
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|
|
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|
|
|
|
|
|
|
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|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
from collections import UserDict
|
| 2 |
+
|
| 3 |
+
import pytest
|
| 4 |
+
|
| 5 |
+
import networkx as nx
|
| 6 |
+
from networkx.utils import edges_equal
|
| 7 |
+
|
| 8 |
+
from .test_graph import BaseAttrGraphTester
|
| 9 |
+
from .test_graph import TestGraph as _TestGraph
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
class BaseMultiGraphTester(BaseAttrGraphTester):
|
| 13 |
+
def test_has_edge(self):
|
| 14 |
+
G = self.K3
|
| 15 |
+
assert G.has_edge(0, 1)
|
| 16 |
+
assert not G.has_edge(0, -1)
|
| 17 |
+
assert G.has_edge(0, 1, 0)
|
| 18 |
+
assert not G.has_edge(0, 1, 1)
|
| 19 |
+
|
| 20 |
+
def test_get_edge_data(self):
|
| 21 |
+
G = self.K3
|
| 22 |
+
assert G.get_edge_data(0, 1) == {0: {}}
|
| 23 |
+
assert G[0][1] == {0: {}}
|
| 24 |
+
assert G[0][1][0] == {}
|
| 25 |
+
assert G.get_edge_data(10, 20) is None
|
| 26 |
+
assert G.get_edge_data(0, 1, 0) == {}
|
| 27 |
+
|
| 28 |
+
def test_adjacency(self):
|
| 29 |
+
G = self.K3
|
| 30 |
+
assert dict(G.adjacency()) == {
|
| 31 |
+
0: {1: {0: {}}, 2: {0: {}}},
|
| 32 |
+
1: {0: {0: {}}, 2: {0: {}}},
|
| 33 |
+
2: {0: {0: {}}, 1: {0: {}}},
|
| 34 |
+
}
|
| 35 |
+
|
| 36 |
+
def deepcopy_edge_attr(self, H, G):
|
| 37 |
+
assert G[1][2][0]["foo"] == H[1][2][0]["foo"]
|
| 38 |
+
G[1][2][0]["foo"].append(1)
|
| 39 |
+
assert G[1][2][0]["foo"] != H[1][2][0]["foo"]
|
| 40 |
+
|
| 41 |
+
def shallow_copy_edge_attr(self, H, G):
|
| 42 |
+
assert G[1][2][0]["foo"] == H[1][2][0]["foo"]
|
| 43 |
+
G[1][2][0]["foo"].append(1)
|
| 44 |
+
assert G[1][2][0]["foo"] == H[1][2][0]["foo"]
|
| 45 |
+
|
| 46 |
+
def graphs_equal(self, H, G):
|
| 47 |
+
assert G._adj == H._adj
|
| 48 |
+
assert G._node == H._node
|
| 49 |
+
assert G.graph == H.graph
|
| 50 |
+
assert G.name == H.name
|
| 51 |
+
if not G.is_directed() and not H.is_directed():
|
| 52 |
+
assert H._adj[1][2][0] is H._adj[2][1][0]
|
| 53 |
+
assert G._adj[1][2][0] is G._adj[2][1][0]
|
| 54 |
+
else: # at least one is directed
|
| 55 |
+
if not G.is_directed():
|
| 56 |
+
G._pred = G._adj
|
| 57 |
+
G._succ = G._adj
|
| 58 |
+
if not H.is_directed():
|
| 59 |
+
H._pred = H._adj
|
| 60 |
+
H._succ = H._adj
|
| 61 |
+
assert G._pred == H._pred
|
| 62 |
+
assert G._succ == H._succ
|
| 63 |
+
assert H._succ[1][2][0] is H._pred[2][1][0]
|
| 64 |
+
assert G._succ[1][2][0] is G._pred[2][1][0]
|
| 65 |
+
|
| 66 |
+
def same_attrdict(self, H, G):
|
| 67 |
+
# same attrdict in the edgedata
|
| 68 |
+
old_foo = H[1][2][0]["foo"]
|
| 69 |
+
H.adj[1][2][0]["foo"] = "baz"
|
| 70 |
+
assert G._adj == H._adj
|
| 71 |
+
H.adj[1][2][0]["foo"] = old_foo
|
| 72 |
+
assert G._adj == H._adj
|
| 73 |
+
|
| 74 |
+
old_foo = H.nodes[0]["foo"]
|
| 75 |
+
H.nodes[0]["foo"] = "baz"
|
| 76 |
+
assert G._node == H._node
|
| 77 |
+
H.nodes[0]["foo"] = old_foo
|
| 78 |
+
assert G._node == H._node
|
| 79 |
+
|
| 80 |
+
def different_attrdict(self, H, G):
|
| 81 |
+
# used by graph_equal_but_different
|
| 82 |
+
old_foo = H[1][2][0]["foo"]
|
| 83 |
+
H.adj[1][2][0]["foo"] = "baz"
|
| 84 |
+
assert G._adj != H._adj
|
| 85 |
+
H.adj[1][2][0]["foo"] = old_foo
|
| 86 |
+
assert G._adj == H._adj
|
| 87 |
+
|
| 88 |
+
old_foo = H.nodes[0]["foo"]
|
| 89 |
+
H.nodes[0]["foo"] = "baz"
|
| 90 |
+
assert G._node != H._node
|
| 91 |
+
H.nodes[0]["foo"] = old_foo
|
| 92 |
+
assert G._node == H._node
|
| 93 |
+
|
| 94 |
+
def test_to_undirected(self):
|
| 95 |
+
G = self.K3
|
| 96 |
+
self.add_attributes(G)
|
| 97 |
+
H = nx.MultiGraph(G)
|
| 98 |
+
self.is_shallow_copy(H, G)
|
| 99 |
+
H = G.to_undirected()
|
| 100 |
+
self.is_deepcopy(H, G)
|
| 101 |
+
|
| 102 |
+
def test_to_directed(self):
|
| 103 |
+
G = self.K3
|
| 104 |
+
self.add_attributes(G)
|
| 105 |
+
H = nx.MultiDiGraph(G)
|
| 106 |
+
self.is_shallow_copy(H, G)
|
| 107 |
+
H = G.to_directed()
|
| 108 |
+
self.is_deepcopy(H, G)
|
| 109 |
+
|
| 110 |
+
def test_number_of_edges_selfloops(self):
|
| 111 |
+
G = self.K3
|
| 112 |
+
G.add_edge(0, 0)
|
| 113 |
+
G.add_edge(0, 0)
|
| 114 |
+
G.add_edge(0, 0, key="parallel edge")
|
| 115 |
+
G.remove_edge(0, 0, key="parallel edge")
|
| 116 |
+
assert G.number_of_edges(0, 0) == 2
|
| 117 |
+
G.remove_edge(0, 0)
|
| 118 |
+
assert G.number_of_edges(0, 0) == 1
|
| 119 |
+
|
| 120 |
+
def test_edge_lookup(self):
|
| 121 |
+
G = self.Graph()
|
| 122 |
+
G.add_edge(1, 2, foo="bar")
|
| 123 |
+
G.add_edge(1, 2, "key", foo="biz")
|
| 124 |
+
assert edges_equal(G.edges[1, 2, 0], {"foo": "bar"})
|
| 125 |
+
assert edges_equal(G.edges[1, 2, "key"], {"foo": "biz"})
|
| 126 |
+
|
| 127 |
+
def test_edge_attr(self):
|
| 128 |
+
G = self.Graph()
|
| 129 |
+
G.add_edge(1, 2, key="k1", foo="bar")
|
| 130 |
+
G.add_edge(1, 2, key="k2", foo="baz")
|
| 131 |
+
assert isinstance(G.get_edge_data(1, 2), G.edge_key_dict_factory)
|
| 132 |
+
assert all(
|
| 133 |
+
isinstance(d, G.edge_attr_dict_factory) for u, v, d in G.edges(data=True)
|
| 134 |
+
)
|
| 135 |
+
assert edges_equal(
|
| 136 |
+
G.edges(keys=True, data=True),
|
| 137 |
+
[(1, 2, "k1", {"foo": "bar"}), (1, 2, "k2", {"foo": "baz"})],
|
| 138 |
+
)
|
| 139 |
+
assert edges_equal(
|
| 140 |
+
G.edges(keys=True, data="foo"), [(1, 2, "k1", "bar"), (1, 2, "k2", "baz")]
|
| 141 |
+
)
|
| 142 |
+
|
| 143 |
+
def test_edge_attr4(self):
|
| 144 |
+
G = self.Graph()
|
| 145 |
+
G.add_edge(1, 2, key=0, data=7, spam="bar", bar="foo")
|
| 146 |
+
assert edges_equal(
|
| 147 |
+
G.edges(data=True), [(1, 2, {"data": 7, "spam": "bar", "bar": "foo"})]
|
| 148 |
+
)
|
| 149 |
+
G[1][2][0]["data"] = 10 # OK to set data like this
|
| 150 |
+
assert edges_equal(
|
| 151 |
+
G.edges(data=True), [(1, 2, {"data": 10, "spam": "bar", "bar": "foo"})]
|
| 152 |
+
)
|
| 153 |
+
|
| 154 |
+
G.adj[1][2][0]["data"] = 20
|
| 155 |
+
assert edges_equal(
|
| 156 |
+
G.edges(data=True), [(1, 2, {"data": 20, "spam": "bar", "bar": "foo"})]
|
| 157 |
+
)
|
| 158 |
+
G.edges[1, 2, 0]["data"] = 21 # another spelling, "edge"
|
| 159 |
+
assert edges_equal(
|
| 160 |
+
G.edges(data=True), [(1, 2, {"data": 21, "spam": "bar", "bar": "foo"})]
|
| 161 |
+
)
|
| 162 |
+
G.adj[1][2][0]["listdata"] = [20, 200]
|
| 163 |
+
G.adj[1][2][0]["weight"] = 20
|
| 164 |
+
assert edges_equal(
|
| 165 |
+
G.edges(data=True),
|
| 166 |
+
[
|
| 167 |
+
(
|
| 168 |
+
1,
|
| 169 |
+
2,
|
| 170 |
+
{
|
| 171 |
+
"data": 21,
|
| 172 |
+
"spam": "bar",
|
| 173 |
+
"bar": "foo",
|
| 174 |
+
"listdata": [20, 200],
|
| 175 |
+
"weight": 20,
|
| 176 |
+
},
|
| 177 |
+
)
|
| 178 |
+
],
|
| 179 |
+
)
|
| 180 |
+
|
| 181 |
+
|
| 182 |
+
class TestMultiGraph(BaseMultiGraphTester, _TestGraph):
|
| 183 |
+
def setup_method(self):
|
| 184 |
+
self.Graph = nx.MultiGraph
|
| 185 |
+
# build K3
|
| 186 |
+
ed1, ed2, ed3 = ({0: {}}, {0: {}}, {0: {}})
|
| 187 |
+
self.k3adj = {0: {1: ed1, 2: ed2}, 1: {0: ed1, 2: ed3}, 2: {0: ed2, 1: ed3}}
|
| 188 |
+
self.k3edges = [(0, 1), (0, 2), (1, 2)]
|
| 189 |
+
self.k3nodes = [0, 1, 2]
|
| 190 |
+
self.K3 = self.Graph()
|
| 191 |
+
self.K3._adj = self.k3adj
|
| 192 |
+
self.K3._node = {}
|
| 193 |
+
self.K3._node[0] = {}
|
| 194 |
+
self.K3._node[1] = {}
|
| 195 |
+
self.K3._node[2] = {}
|
| 196 |
+
|
| 197 |
+
def test_data_input(self):
|
| 198 |
+
G = self.Graph({1: [2], 2: [1]}, name="test")
|
| 199 |
+
assert G.name == "test"
|
| 200 |
+
expected = [(1, {2: {0: {}}}), (2, {1: {0: {}}})]
|
| 201 |
+
assert sorted(G.adj.items()) == expected
|
| 202 |
+
|
| 203 |
+
def test_data_multigraph_input(self):
|
| 204 |
+
# standard case with edge keys and edge data
|
| 205 |
+
edata0 = {"w": 200, "s": "foo"}
|
| 206 |
+
edata1 = {"w": 201, "s": "bar"}
|
| 207 |
+
keydict = {0: edata0, 1: edata1}
|
| 208 |
+
dododod = {"a": {"b": keydict}}
|
| 209 |
+
|
| 210 |
+
multiple_edge = [("a", "b", 0, edata0), ("a", "b", 1, edata1)]
|
| 211 |
+
single_edge = [("a", "b", 0, keydict)]
|
| 212 |
+
|
| 213 |
+
G = self.Graph(dododod, multigraph_input=True)
|
| 214 |
+
assert list(G.edges(keys=True, data=True)) == multiple_edge
|
| 215 |
+
G = self.Graph(dododod, multigraph_input=None)
|
| 216 |
+
assert list(G.edges(keys=True, data=True)) == multiple_edge
|
| 217 |
+
G = self.Graph(dododod, multigraph_input=False)
|
| 218 |
+
assert list(G.edges(keys=True, data=True)) == single_edge
|
| 219 |
+
|
| 220 |
+
# test round-trip to_dict_of_dict and MultiGraph constructor
|
| 221 |
+
G = self.Graph(dododod, multigraph_input=True)
|
| 222 |
+
H = self.Graph(nx.to_dict_of_dicts(G))
|
| 223 |
+
assert nx.is_isomorphic(G, H) is True # test that default is True
|
| 224 |
+
for mgi in [True, False]:
|
| 225 |
+
H = self.Graph(nx.to_dict_of_dicts(G), multigraph_input=mgi)
|
| 226 |
+
assert nx.is_isomorphic(G, H) == mgi
|
| 227 |
+
|
| 228 |
+
# Set up cases for when incoming_graph_data is not multigraph_input
|
| 229 |
+
etraits = {"w": 200, "s": "foo"}
|
| 230 |
+
egraphics = {"color": "blue", "shape": "box"}
|
| 231 |
+
edata = {"traits": etraits, "graphics": egraphics}
|
| 232 |
+
dodod1 = {"a": {"b": edata}}
|
| 233 |
+
dodod2 = {"a": {"b": etraits}}
|
| 234 |
+
dodod3 = {"a": {"b": {"traits": etraits, "s": "foo"}}}
|
| 235 |
+
dol = {"a": ["b"]}
|
| 236 |
+
|
| 237 |
+
multiple_edge = [("a", "b", "traits", etraits), ("a", "b", "graphics", egraphics)]
|
| 238 |
+
single_edge = [("a", "b", 0, {})] # type: ignore[var-annotated]
|
| 239 |
+
single_edge1 = [("a", "b", 0, edata)]
|
| 240 |
+
single_edge2 = [("a", "b", 0, etraits)]
|
| 241 |
+
single_edge3 = [("a", "b", 0, {"traits": etraits, "s": "foo"})]
|
| 242 |
+
|
| 243 |
+
cases = [ # (dod, mgi, edges)
|
| 244 |
+
(dodod1, True, multiple_edge),
|
| 245 |
+
(dodod1, False, single_edge1),
|
| 246 |
+
(dodod2, False, single_edge2),
|
| 247 |
+
(dodod3, False, single_edge3),
|
| 248 |
+
(dol, False, single_edge),
|
| 249 |
+
]
|
| 250 |
+
|
| 251 |
+
@pytest.mark.parametrize("dod, mgi, edges", cases)
|
| 252 |
+
def test_non_multigraph_input(self, dod, mgi, edges):
|
| 253 |
+
G = self.Graph(dod, multigraph_input=mgi)
|
| 254 |
+
assert list(G.edges(keys=True, data=True)) == edges
|
| 255 |
+
G = nx.to_networkx_graph(dod, create_using=self.Graph, multigraph_input=mgi)
|
| 256 |
+
assert list(G.edges(keys=True, data=True)) == edges
|
| 257 |
+
|
| 258 |
+
mgi_none_cases = [
|
| 259 |
+
(dodod1, multiple_edge),
|
| 260 |
+
(dodod2, single_edge2),
|
| 261 |
+
(dodod3, single_edge3),
|
| 262 |
+
]
|
| 263 |
+
|
| 264 |
+
@pytest.mark.parametrize("dod, edges", mgi_none_cases)
|
| 265 |
+
def test_non_multigraph_input_mgi_none(self, dod, edges):
|
| 266 |
+
# test constructor without to_networkx_graph for mgi=None
|
| 267 |
+
G = self.Graph(dod)
|
| 268 |
+
assert list(G.edges(keys=True, data=True)) == edges
|
| 269 |
+
|
| 270 |
+
raise_cases = [dodod2, dodod3, dol]
|
| 271 |
+
|
| 272 |
+
@pytest.mark.parametrize("dod", raise_cases)
|
| 273 |
+
def test_non_multigraph_input_raise(self, dod):
|
| 274 |
+
# cases where NetworkXError is raised
|
| 275 |
+
pytest.raises(nx.NetworkXError, self.Graph, dod, multigraph_input=True)
|
| 276 |
+
pytest.raises(
|
| 277 |
+
nx.NetworkXError,
|
| 278 |
+
nx.to_networkx_graph,
|
| 279 |
+
dod,
|
| 280 |
+
create_using=self.Graph,
|
| 281 |
+
multigraph_input=True,
|
| 282 |
+
)
|
| 283 |
+
|
| 284 |
+
def test_getitem(self):
|
| 285 |
+
G = self.K3
|
| 286 |
+
assert G[0] == {1: {0: {}}, 2: {0: {}}}
|
| 287 |
+
with pytest.raises(KeyError):
|
| 288 |
+
G.__getitem__("j")
|
| 289 |
+
with pytest.raises(TypeError):
|
| 290 |
+
G.__getitem__(["A"])
|
| 291 |
+
|
| 292 |
+
def test_remove_node(self):
|
| 293 |
+
G = self.K3
|
| 294 |
+
G.remove_node(0)
|
| 295 |
+
assert G.adj == {1: {2: {0: {}}}, 2: {1: {0: {}}}}
|
| 296 |
+
with pytest.raises(nx.NetworkXError):
|
| 297 |
+
G.remove_node(-1)
|
| 298 |
+
|
| 299 |
+
def test_add_edge(self):
|
| 300 |
+
G = self.Graph()
|
| 301 |
+
G.add_edge(0, 1)
|
| 302 |
+
assert G.adj == {0: {1: {0: {}}}, 1: {0: {0: {}}}}
|
| 303 |
+
G = self.Graph()
|
| 304 |
+
G.add_edge(*(0, 1))
|
| 305 |
+
assert G.adj == {0: {1: {0: {}}}, 1: {0: {0: {}}}}
|
| 306 |
+
G = self.Graph()
|
| 307 |
+
with pytest.raises(ValueError):
|
| 308 |
+
G.add_edge(None, "anything")
|
| 309 |
+
|
| 310 |
+
def test_add_edge_conflicting_key(self):
|
| 311 |
+
G = self.Graph()
|
| 312 |
+
G.add_edge(0, 1, key=1)
|
| 313 |
+
G.add_edge(0, 1)
|
| 314 |
+
assert G.number_of_edges() == 2
|
| 315 |
+
G = self.Graph()
|
| 316 |
+
G.add_edges_from([(0, 1, 1, {})])
|
| 317 |
+
G.add_edges_from([(0, 1)])
|
| 318 |
+
assert G.number_of_edges() == 2
|
| 319 |
+
|
| 320 |
+
def test_add_edges_from(self):
|
| 321 |
+
G = self.Graph()
|
| 322 |
+
G.add_edges_from([(0, 1), (0, 1, {"weight": 3})])
|
| 323 |
+
assert G.adj == {
|
| 324 |
+
0: {1: {0: {}, 1: {"weight": 3}}},
|
| 325 |
+
1: {0: {0: {}, 1: {"weight": 3}}},
|
| 326 |
+
}
|
| 327 |
+
G.add_edges_from([(0, 1), (0, 1, {"weight": 3})], weight=2)
|
| 328 |
+
assert G.adj == {
|
| 329 |
+
0: {1: {0: {}, 1: {"weight": 3}, 2: {"weight": 2}, 3: {"weight": 3}}},
|
| 330 |
+
1: {0: {0: {}, 1: {"weight": 3}, 2: {"weight": 2}, 3: {"weight": 3}}},
|
| 331 |
+
}
|
| 332 |
+
G = self.Graph()
|
| 333 |
+
edges = [
|
| 334 |
+
(0, 1, {"weight": 3}),
|
| 335 |
+
(0, 1, (("weight", 2),)),
|
| 336 |
+
(0, 1, 5),
|
| 337 |
+
(0, 1, "s"),
|
| 338 |
+
]
|
| 339 |
+
G.add_edges_from(edges)
|
| 340 |
+
keydict = {0: {"weight": 3}, 1: {"weight": 2}, 5: {}, "s": {}}
|
| 341 |
+
assert G._adj == {0: {1: keydict}, 1: {0: keydict}}
|
| 342 |
+
|
| 343 |
+
# too few in tuple
|
| 344 |
+
with pytest.raises(nx.NetworkXError):
|
| 345 |
+
G.add_edges_from([(0,)])
|
| 346 |
+
# too many in tuple
|
| 347 |
+
with pytest.raises(nx.NetworkXError):
|
| 348 |
+
G.add_edges_from([(0, 1, 2, 3, 4)])
|
| 349 |
+
# not a tuple
|
| 350 |
+
with pytest.raises(TypeError):
|
| 351 |
+
G.add_edges_from([0])
|
| 352 |
+
|
| 353 |
+
def test_multigraph_add_edges_from_four_tuple_misordered(self):
|
| 354 |
+
"""add_edges_from expects 4-tuples of the format (u, v, key, data_dict).
|
| 355 |
+
|
| 356 |
+
Ensure 4-tuples of form (u, v, data_dict, key) raise exception.
|
| 357 |
+
"""
|
| 358 |
+
G = nx.MultiGraph()
|
| 359 |
+
with pytest.raises(TypeError):
|
| 360 |
+
# key/data values flipped in 4-tuple
|
| 361 |
+
G.add_edges_from([(0, 1, {"color": "red"}, 0)])
|
| 362 |
+
|
| 363 |
+
def test_remove_edge(self):
|
| 364 |
+
G = self.K3
|
| 365 |
+
G.remove_edge(0, 1)
|
| 366 |
+
assert G.adj == {0: {2: {0: {}}}, 1: {2: {0: {}}}, 2: {0: {0: {}}, 1: {0: {}}}}
|
| 367 |
+
|
| 368 |
+
with pytest.raises(nx.NetworkXError):
|
| 369 |
+
G.remove_edge(-1, 0)
|
| 370 |
+
with pytest.raises(nx.NetworkXError):
|
| 371 |
+
G.remove_edge(0, 2, key=1)
|
| 372 |
+
|
| 373 |
+
def test_remove_edges_from(self):
|
| 374 |
+
G = self.K3.copy()
|
| 375 |
+
G.remove_edges_from([(0, 1)])
|
| 376 |
+
kd = {0: {}}
|
| 377 |
+
assert G.adj == {0: {2: kd}, 1: {2: kd}, 2: {0: kd, 1: kd}}
|
| 378 |
+
G.remove_edges_from([(0, 0)]) # silent fail
|
| 379 |
+
self.K3.add_edge(0, 1)
|
| 380 |
+
G = self.K3.copy()
|
| 381 |
+
G.remove_edges_from(list(G.edges(data=True, keys=True)))
|
| 382 |
+
assert G.adj == {0: {}, 1: {}, 2: {}}
|
| 383 |
+
G = self.K3.copy()
|
| 384 |
+
G.remove_edges_from(list(G.edges(data=False, keys=True)))
|
| 385 |
+
assert G.adj == {0: {}, 1: {}, 2: {}}
|
| 386 |
+
G = self.K3.copy()
|
| 387 |
+
G.remove_edges_from(list(G.edges(data=False, keys=False)))
|
| 388 |
+
assert G.adj == {0: {}, 1: {}, 2: {}}
|
| 389 |
+
G = self.K3.copy()
|
| 390 |
+
G.remove_edges_from([(0, 1, 0), (0, 2, 0, {}), (1, 2)])
|
| 391 |
+
assert G.adj == {0: {1: {1: {}}}, 1: {0: {1: {}}}, 2: {}}
|
| 392 |
+
|
| 393 |
+
def test_remove_multiedge(self):
|
| 394 |
+
G = self.K3
|
| 395 |
+
G.add_edge(0, 1, key="parallel edge")
|
| 396 |
+
G.remove_edge(0, 1, key="parallel edge")
|
| 397 |
+
assert G.adj == {
|
| 398 |
+
0: {1: {0: {}}, 2: {0: {}}},
|
| 399 |
+
1: {0: {0: {}}, 2: {0: {}}},
|
| 400 |
+
2: {0: {0: {}}, 1: {0: {}}},
|
| 401 |
+
}
|
| 402 |
+
G.remove_edge(0, 1)
|
| 403 |
+
kd = {0: {}}
|
| 404 |
+
assert G.adj == {0: {2: kd}, 1: {2: kd}, 2: {0: kd, 1: kd}}
|
| 405 |
+
with pytest.raises(nx.NetworkXError):
|
| 406 |
+
G.remove_edge(-1, 0)
|
| 407 |
+
|
| 408 |
+
|
| 409 |
+
class TestEdgeSubgraph:
|
| 410 |
+
"""Unit tests for the :meth:`MultiGraph.edge_subgraph` method."""
|
| 411 |
+
|
| 412 |
+
def setup_method(self):
|
| 413 |
+
# Create a doubly-linked path graph on five nodes.
|
| 414 |
+
G = nx.MultiGraph()
|
| 415 |
+
nx.add_path(G, range(5))
|
| 416 |
+
nx.add_path(G, range(5))
|
| 417 |
+
# Add some node, edge, and graph attributes.
|
| 418 |
+
for i in range(5):
|
| 419 |
+
G.nodes[i]["name"] = f"node{i}"
|
| 420 |
+
G.adj[0][1][0]["name"] = "edge010"
|
| 421 |
+
G.adj[0][1][1]["name"] = "edge011"
|
| 422 |
+
G.adj[3][4][0]["name"] = "edge340"
|
| 423 |
+
G.adj[3][4][1]["name"] = "edge341"
|
| 424 |
+
G.graph["name"] = "graph"
|
| 425 |
+
# Get the subgraph induced by one of the first edges and one of
|
| 426 |
+
# the last edges.
|
| 427 |
+
self.G = G
|
| 428 |
+
self.H = G.edge_subgraph([(0, 1, 0), (3, 4, 1)])
|
| 429 |
+
|
| 430 |
+
def test_correct_nodes(self):
|
| 431 |
+
"""Tests that the subgraph has the correct nodes."""
|
| 432 |
+
assert [0, 1, 3, 4] == sorted(self.H.nodes())
|
| 433 |
+
|
| 434 |
+
def test_correct_edges(self):
|
| 435 |
+
"""Tests that the subgraph has the correct edges."""
|
| 436 |
+
assert [(0, 1, 0, "edge010"), (3, 4, 1, "edge341")] == sorted(
|
| 437 |
+
self.H.edges(keys=True, data="name")
|
| 438 |
+
)
|
| 439 |
+
|
| 440 |
+
def test_add_node(self):
|
| 441 |
+
"""Tests that adding a node to the original graph does not
|
| 442 |
+
affect the nodes of the subgraph.
|
| 443 |
+
|
| 444 |
+
"""
|
| 445 |
+
self.G.add_node(5)
|
| 446 |
+
assert [0, 1, 3, 4] == sorted(self.H.nodes())
|
| 447 |
+
|
| 448 |
+
def test_remove_node(self):
|
| 449 |
+
"""Tests that removing a node in the original graph does
|
| 450 |
+
affect the nodes of the subgraph.
|
| 451 |
+
|
| 452 |
+
"""
|
| 453 |
+
self.G.remove_node(0)
|
| 454 |
+
assert [1, 3, 4] == sorted(self.H.nodes())
|
| 455 |
+
|
| 456 |
+
def test_node_attr_dict(self):
|
| 457 |
+
"""Tests that the node attribute dictionary of the two graphs is
|
| 458 |
+
the same object.
|
| 459 |
+
|
| 460 |
+
"""
|
| 461 |
+
for v in self.H:
|
| 462 |
+
assert self.G.nodes[v] == self.H.nodes[v]
|
| 463 |
+
# Making a change to G should make a change in H and vice versa.
|
| 464 |
+
self.G.nodes[0]["name"] = "foo"
|
| 465 |
+
assert self.G.nodes[0] == self.H.nodes[0]
|
| 466 |
+
self.H.nodes[1]["name"] = "bar"
|
| 467 |
+
assert self.G.nodes[1] == self.H.nodes[1]
|
| 468 |
+
|
| 469 |
+
def test_edge_attr_dict(self):
|
| 470 |
+
"""Tests that the edge attribute dictionary of the two graphs is
|
| 471 |
+
the same object.
|
| 472 |
+
|
| 473 |
+
"""
|
| 474 |
+
for u, v, k in self.H.edges(keys=True):
|
| 475 |
+
assert self.G._adj[u][v][k] == self.H._adj[u][v][k]
|
| 476 |
+
# Making a change to G should make a change in H and vice versa.
|
| 477 |
+
self.G._adj[0][1][0]["name"] = "foo"
|
| 478 |
+
assert self.G._adj[0][1][0]["name"] == self.H._adj[0][1][0]["name"]
|
| 479 |
+
self.H._adj[3][4][1]["name"] = "bar"
|
| 480 |
+
assert self.G._adj[3][4][1]["name"] == self.H._adj[3][4][1]["name"]
|
| 481 |
+
|
| 482 |
+
def test_graph_attr_dict(self):
|
| 483 |
+
"""Tests that the graph attribute dictionary of the two graphs
|
| 484 |
+
is the same object.
|
| 485 |
+
|
| 486 |
+
"""
|
| 487 |
+
assert self.G.graph is self.H.graph
|
| 488 |
+
|
| 489 |
+
|
| 490 |
+
class CustomDictClass(UserDict):
|
| 491 |
+
pass
|
| 492 |
+
|
| 493 |
+
|
| 494 |
+
class MultiGraphSubClass(nx.MultiGraph):
|
| 495 |
+
node_dict_factory = CustomDictClass # type: ignore[assignment]
|
| 496 |
+
node_attr_dict_factory = CustomDictClass # type: ignore[assignment]
|
| 497 |
+
adjlist_outer_dict_factory = CustomDictClass # type: ignore[assignment]
|
| 498 |
+
adjlist_inner_dict_factory = CustomDictClass # type: ignore[assignment]
|
| 499 |
+
edge_key_dict_factory = CustomDictClass # type: ignore[assignment]
|
| 500 |
+
edge_attr_dict_factory = CustomDictClass # type: ignore[assignment]
|
| 501 |
+
graph_attr_dict_factory = CustomDictClass # type: ignore[assignment]
|
| 502 |
+
|
| 503 |
+
|
| 504 |
+
class TestMultiGraphSubclass(TestMultiGraph):
|
| 505 |
+
def setup_method(self):
|
| 506 |
+
self.Graph = MultiGraphSubClass
|
| 507 |
+
# build K3
|
| 508 |
+
self.k3edges = [(0, 1), (0, 2), (1, 2)]
|
| 509 |
+
self.k3nodes = [0, 1, 2]
|
| 510 |
+
self.K3 = self.Graph()
|
| 511 |
+
self.K3._adj = self.K3.adjlist_outer_dict_factory(
|
| 512 |
+
{
|
| 513 |
+
0: self.K3.adjlist_inner_dict_factory(),
|
| 514 |
+
1: self.K3.adjlist_inner_dict_factory(),
|
| 515 |
+
2: self.K3.adjlist_inner_dict_factory(),
|
| 516 |
+
}
|
| 517 |
+
)
|
| 518 |
+
self.K3._pred = {0: {}, 1: {}, 2: {}}
|
| 519 |
+
for u in self.k3nodes:
|
| 520 |
+
for v in self.k3nodes:
|
| 521 |
+
if u != v:
|
| 522 |
+
d = {0: {}}
|
| 523 |
+
self.K3._adj[u][v] = d
|
| 524 |
+
self.K3._adj[v][u] = d
|
| 525 |
+
self.K3._node = self.K3.node_dict_factory()
|
| 526 |
+
self.K3._node[0] = self.K3.node_attr_dict_factory()
|
| 527 |
+
self.K3._node[1] = self.K3.node_attr_dict_factory()
|
| 528 |
+
self.K3._node[2] = self.K3.node_attr_dict_factory()
|
minigpt2/lib/python3.10/site-packages/networkx/classes/tests/test_reportviews.py
ADDED
|
@@ -0,0 +1,1435 @@
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|
| 1 |
+
import pickle
|
| 2 |
+
from copy import deepcopy
|
| 3 |
+
|
| 4 |
+
import pytest
|
| 5 |
+
|
| 6 |
+
import networkx as nx
|
| 7 |
+
from networkx.classes import reportviews as rv
|
| 8 |
+
from networkx.classes.reportviews import NodeDataView
|
| 9 |
+
|
| 10 |
+
|
| 11 |
+
# Nodes
|
| 12 |
+
class TestNodeView:
|
| 13 |
+
@classmethod
|
| 14 |
+
def setup_class(cls):
|
| 15 |
+
cls.G = nx.path_graph(9)
|
| 16 |
+
cls.nv = cls.G.nodes # NodeView(G)
|
| 17 |
+
|
| 18 |
+
def test_pickle(self):
|
| 19 |
+
import pickle
|
| 20 |
+
|
| 21 |
+
nv = self.nv
|
| 22 |
+
pnv = pickle.loads(pickle.dumps(nv, -1))
|
| 23 |
+
assert nv == pnv
|
| 24 |
+
assert nv.__slots__ == pnv.__slots__
|
| 25 |
+
|
| 26 |
+
def test_str(self):
|
| 27 |
+
assert str(self.nv) == "[0, 1, 2, 3, 4, 5, 6, 7, 8]"
|
| 28 |
+
|
| 29 |
+
def test_repr(self):
|
| 30 |
+
assert repr(self.nv) == "NodeView((0, 1, 2, 3, 4, 5, 6, 7, 8))"
|
| 31 |
+
|
| 32 |
+
def test_contains(self):
|
| 33 |
+
G = self.G.copy()
|
| 34 |
+
nv = G.nodes
|
| 35 |
+
assert 7 in nv
|
| 36 |
+
assert 9 not in nv
|
| 37 |
+
G.remove_node(7)
|
| 38 |
+
G.add_node(9)
|
| 39 |
+
assert 7 not in nv
|
| 40 |
+
assert 9 in nv
|
| 41 |
+
|
| 42 |
+
def test_getitem(self):
|
| 43 |
+
G = self.G.copy()
|
| 44 |
+
nv = G.nodes
|
| 45 |
+
G.nodes[3]["foo"] = "bar"
|
| 46 |
+
assert nv[7] == {}
|
| 47 |
+
assert nv[3] == {"foo": "bar"}
|
| 48 |
+
# slicing
|
| 49 |
+
with pytest.raises(nx.NetworkXError):
|
| 50 |
+
G.nodes[0:5]
|
| 51 |
+
|
| 52 |
+
def test_iter(self):
|
| 53 |
+
nv = self.nv
|
| 54 |
+
for i, n in enumerate(nv):
|
| 55 |
+
assert i == n
|
| 56 |
+
inv = iter(nv)
|
| 57 |
+
assert next(inv) == 0
|
| 58 |
+
assert iter(nv) != nv
|
| 59 |
+
assert iter(inv) == inv
|
| 60 |
+
inv2 = iter(nv)
|
| 61 |
+
next(inv2)
|
| 62 |
+
assert list(inv) == list(inv2)
|
| 63 |
+
# odd case where NodeView calls NodeDataView with data=False
|
| 64 |
+
nnv = nv(data=False)
|
| 65 |
+
for i, n in enumerate(nnv):
|
| 66 |
+
assert i == n
|
| 67 |
+
|
| 68 |
+
def test_call(self):
|
| 69 |
+
nodes = self.nv
|
| 70 |
+
assert nodes is nodes()
|
| 71 |
+
assert nodes is not nodes(data=True)
|
| 72 |
+
assert nodes is not nodes(data="weight")
|
| 73 |
+
|
| 74 |
+
|
| 75 |
+
class TestNodeDataView:
|
| 76 |
+
@classmethod
|
| 77 |
+
def setup_class(cls):
|
| 78 |
+
cls.G = nx.path_graph(9)
|
| 79 |
+
cls.nv = NodeDataView(cls.G)
|
| 80 |
+
cls.ndv = cls.G.nodes.data(True)
|
| 81 |
+
cls.nwv = cls.G.nodes.data("foo")
|
| 82 |
+
|
| 83 |
+
def test_viewtype(self):
|
| 84 |
+
nv = self.G.nodes
|
| 85 |
+
ndvfalse = nv.data(False)
|
| 86 |
+
assert nv is ndvfalse
|
| 87 |
+
assert nv is not self.ndv
|
| 88 |
+
|
| 89 |
+
def test_pickle(self):
|
| 90 |
+
import pickle
|
| 91 |
+
|
| 92 |
+
nv = self.nv
|
| 93 |
+
pnv = pickle.loads(pickle.dumps(nv, -1))
|
| 94 |
+
assert nv == pnv
|
| 95 |
+
assert nv.__slots__ == pnv.__slots__
|
| 96 |
+
|
| 97 |
+
def test_str(self):
|
| 98 |
+
msg = str([(n, {}) for n in range(9)])
|
| 99 |
+
assert str(self.ndv) == msg
|
| 100 |
+
|
| 101 |
+
def test_repr(self):
|
| 102 |
+
expected = "NodeDataView((0, 1, 2, 3, 4, 5, 6, 7, 8))"
|
| 103 |
+
assert repr(self.nv) == expected
|
| 104 |
+
expected = (
|
| 105 |
+
"NodeDataView({0: {}, 1: {}, 2: {}, 3: {}, "
|
| 106 |
+
+ "4: {}, 5: {}, 6: {}, 7: {}, 8: {}})"
|
| 107 |
+
)
|
| 108 |
+
assert repr(self.ndv) == expected
|
| 109 |
+
expected = (
|
| 110 |
+
"NodeDataView({0: None, 1: None, 2: None, 3: None, 4: None, "
|
| 111 |
+
+ "5: None, 6: None, 7: None, 8: None}, data='foo')"
|
| 112 |
+
)
|
| 113 |
+
assert repr(self.nwv) == expected
|
| 114 |
+
|
| 115 |
+
def test_contains(self):
|
| 116 |
+
G = self.G.copy()
|
| 117 |
+
nv = G.nodes.data()
|
| 118 |
+
nwv = G.nodes.data("foo")
|
| 119 |
+
G.nodes[3]["foo"] = "bar"
|
| 120 |
+
assert (7, {}) in nv
|
| 121 |
+
assert (3, {"foo": "bar"}) in nv
|
| 122 |
+
assert (3, "bar") in nwv
|
| 123 |
+
assert (7, None) in nwv
|
| 124 |
+
# default
|
| 125 |
+
nwv_def = G.nodes(data="foo", default="biz")
|
| 126 |
+
assert (7, "biz") in nwv_def
|
| 127 |
+
assert (3, "bar") in nwv_def
|
| 128 |
+
|
| 129 |
+
def test_getitem(self):
|
| 130 |
+
G = self.G.copy()
|
| 131 |
+
nv = G.nodes
|
| 132 |
+
G.nodes[3]["foo"] = "bar"
|
| 133 |
+
assert nv[3] == {"foo": "bar"}
|
| 134 |
+
# default
|
| 135 |
+
nwv_def = G.nodes(data="foo", default="biz")
|
| 136 |
+
assert nwv_def[7], "biz"
|
| 137 |
+
assert nwv_def[3] == "bar"
|
| 138 |
+
# slicing
|
| 139 |
+
with pytest.raises(nx.NetworkXError):
|
| 140 |
+
G.nodes.data()[0:5]
|
| 141 |
+
|
| 142 |
+
def test_iter(self):
|
| 143 |
+
G = self.G.copy()
|
| 144 |
+
nv = G.nodes.data()
|
| 145 |
+
ndv = G.nodes.data(True)
|
| 146 |
+
nwv = G.nodes.data("foo")
|
| 147 |
+
for i, (n, d) in enumerate(nv):
|
| 148 |
+
assert i == n
|
| 149 |
+
assert d == {}
|
| 150 |
+
inv = iter(nv)
|
| 151 |
+
assert next(inv) == (0, {})
|
| 152 |
+
G.nodes[3]["foo"] = "bar"
|
| 153 |
+
# default
|
| 154 |
+
for n, d in nv:
|
| 155 |
+
if n == 3:
|
| 156 |
+
assert d == {"foo": "bar"}
|
| 157 |
+
else:
|
| 158 |
+
assert d == {}
|
| 159 |
+
# data=True
|
| 160 |
+
for n, d in ndv:
|
| 161 |
+
if n == 3:
|
| 162 |
+
assert d == {"foo": "bar"}
|
| 163 |
+
else:
|
| 164 |
+
assert d == {}
|
| 165 |
+
# data='foo'
|
| 166 |
+
for n, d in nwv:
|
| 167 |
+
if n == 3:
|
| 168 |
+
assert d == "bar"
|
| 169 |
+
else:
|
| 170 |
+
assert d is None
|
| 171 |
+
# data='foo', default=1
|
| 172 |
+
for n, d in G.nodes.data("foo", default=1):
|
| 173 |
+
if n == 3:
|
| 174 |
+
assert d == "bar"
|
| 175 |
+
else:
|
| 176 |
+
assert d == 1
|
| 177 |
+
|
| 178 |
+
|
| 179 |
+
def test_nodedataview_unhashable():
|
| 180 |
+
G = nx.path_graph(9)
|
| 181 |
+
G.nodes[3]["foo"] = "bar"
|
| 182 |
+
nvs = [G.nodes.data()]
|
| 183 |
+
nvs.append(G.nodes.data(True))
|
| 184 |
+
H = G.copy()
|
| 185 |
+
H.nodes[4]["foo"] = {1, 2, 3}
|
| 186 |
+
nvs.append(H.nodes.data(True))
|
| 187 |
+
# raise unhashable
|
| 188 |
+
for nv in nvs:
|
| 189 |
+
pytest.raises(TypeError, set, nv)
|
| 190 |
+
pytest.raises(TypeError, eval, "nv | nv", locals())
|
| 191 |
+
# no raise... hashable
|
| 192 |
+
Gn = G.nodes.data(False)
|
| 193 |
+
set(Gn)
|
| 194 |
+
Gn | Gn
|
| 195 |
+
Gn = G.nodes.data("foo")
|
| 196 |
+
set(Gn)
|
| 197 |
+
Gn | Gn
|
| 198 |
+
|
| 199 |
+
|
| 200 |
+
class TestNodeViewSetOps:
|
| 201 |
+
@classmethod
|
| 202 |
+
def setup_class(cls):
|
| 203 |
+
cls.G = nx.path_graph(9)
|
| 204 |
+
cls.G.nodes[3]["foo"] = "bar"
|
| 205 |
+
cls.nv = cls.G.nodes
|
| 206 |
+
|
| 207 |
+
def n_its(self, nodes):
|
| 208 |
+
return set(nodes)
|
| 209 |
+
|
| 210 |
+
def test_len(self):
|
| 211 |
+
G = self.G.copy()
|
| 212 |
+
nv = G.nodes
|
| 213 |
+
assert len(nv) == 9
|
| 214 |
+
G.remove_node(7)
|
| 215 |
+
assert len(nv) == 8
|
| 216 |
+
G.add_node(9)
|
| 217 |
+
assert len(nv) == 9
|
| 218 |
+
|
| 219 |
+
def test_and(self):
|
| 220 |
+
# print("G & H nodes:", gnv & hnv)
|
| 221 |
+
nv = self.nv
|
| 222 |
+
some_nodes = self.n_its(range(5, 12))
|
| 223 |
+
assert nv & some_nodes == self.n_its(range(5, 9))
|
| 224 |
+
assert some_nodes & nv == self.n_its(range(5, 9))
|
| 225 |
+
|
| 226 |
+
def test_or(self):
|
| 227 |
+
# print("G | H nodes:", gnv | hnv)
|
| 228 |
+
nv = self.nv
|
| 229 |
+
some_nodes = self.n_its(range(5, 12))
|
| 230 |
+
assert nv | some_nodes == self.n_its(range(12))
|
| 231 |
+
assert some_nodes | nv == self.n_its(range(12))
|
| 232 |
+
|
| 233 |
+
def test_xor(self):
|
| 234 |
+
# print("G ^ H nodes:", gnv ^ hnv)
|
| 235 |
+
nv = self.nv
|
| 236 |
+
some_nodes = self.n_its(range(5, 12))
|
| 237 |
+
nodes = {0, 1, 2, 3, 4, 9, 10, 11}
|
| 238 |
+
assert nv ^ some_nodes == self.n_its(nodes)
|
| 239 |
+
assert some_nodes ^ nv == self.n_its(nodes)
|
| 240 |
+
|
| 241 |
+
def test_sub(self):
|
| 242 |
+
# print("G - H nodes:", gnv - hnv)
|
| 243 |
+
nv = self.nv
|
| 244 |
+
some_nodes = self.n_its(range(5, 12))
|
| 245 |
+
assert nv - some_nodes == self.n_its(range(5))
|
| 246 |
+
assert some_nodes - nv == self.n_its(range(9, 12))
|
| 247 |
+
|
| 248 |
+
|
| 249 |
+
class TestNodeDataViewSetOps(TestNodeViewSetOps):
|
| 250 |
+
@classmethod
|
| 251 |
+
def setup_class(cls):
|
| 252 |
+
cls.G = nx.path_graph(9)
|
| 253 |
+
cls.G.nodes[3]["foo"] = "bar"
|
| 254 |
+
cls.nv = cls.G.nodes.data("foo")
|
| 255 |
+
|
| 256 |
+
def n_its(self, nodes):
|
| 257 |
+
return {(node, "bar" if node == 3 else None) for node in nodes}
|
| 258 |
+
|
| 259 |
+
|
| 260 |
+
class TestNodeDataViewDefaultSetOps(TestNodeDataViewSetOps):
|
| 261 |
+
@classmethod
|
| 262 |
+
def setup_class(cls):
|
| 263 |
+
cls.G = nx.path_graph(9)
|
| 264 |
+
cls.G.nodes[3]["foo"] = "bar"
|
| 265 |
+
cls.nv = cls.G.nodes.data("foo", default=1)
|
| 266 |
+
|
| 267 |
+
def n_its(self, nodes):
|
| 268 |
+
return {(node, "bar" if node == 3 else 1) for node in nodes}
|
| 269 |
+
|
| 270 |
+
|
| 271 |
+
# Edges Data View
|
| 272 |
+
class TestEdgeDataView:
|
| 273 |
+
@classmethod
|
| 274 |
+
def setup_class(cls):
|
| 275 |
+
cls.G = nx.path_graph(9)
|
| 276 |
+
cls.eview = nx.reportviews.EdgeView
|
| 277 |
+
|
| 278 |
+
def test_pickle(self):
|
| 279 |
+
import pickle
|
| 280 |
+
|
| 281 |
+
ev = self.eview(self.G)(data=True)
|
| 282 |
+
pev = pickle.loads(pickle.dumps(ev, -1))
|
| 283 |
+
assert list(ev) == list(pev)
|
| 284 |
+
assert ev.__slots__ == pev.__slots__
|
| 285 |
+
|
| 286 |
+
def modify_edge(self, G, e, **kwds):
|
| 287 |
+
G._adj[e[0]][e[1]].update(kwds)
|
| 288 |
+
|
| 289 |
+
def test_str(self):
|
| 290 |
+
ev = self.eview(self.G)(data=True)
|
| 291 |
+
rep = str([(n, n + 1, {}) for n in range(8)])
|
| 292 |
+
assert str(ev) == rep
|
| 293 |
+
|
| 294 |
+
def test_repr(self):
|
| 295 |
+
ev = self.eview(self.G)(data=True)
|
| 296 |
+
rep = (
|
| 297 |
+
"EdgeDataView([(0, 1, {}), (1, 2, {}), "
|
| 298 |
+
+ "(2, 3, {}), (3, 4, {}), "
|
| 299 |
+
+ "(4, 5, {}), (5, 6, {}), "
|
| 300 |
+
+ "(6, 7, {}), (7, 8, {})])"
|
| 301 |
+
)
|
| 302 |
+
assert repr(ev) == rep
|
| 303 |
+
|
| 304 |
+
def test_iterdata(self):
|
| 305 |
+
G = self.G.copy()
|
| 306 |
+
evr = self.eview(G)
|
| 307 |
+
ev = evr(data=True)
|
| 308 |
+
ev_def = evr(data="foo", default=1)
|
| 309 |
+
|
| 310 |
+
for u, v, d in ev:
|
| 311 |
+
pass
|
| 312 |
+
assert d == {}
|
| 313 |
+
|
| 314 |
+
for u, v, wt in ev_def:
|
| 315 |
+
pass
|
| 316 |
+
assert wt == 1
|
| 317 |
+
|
| 318 |
+
self.modify_edge(G, (2, 3), foo="bar")
|
| 319 |
+
for e in ev:
|
| 320 |
+
assert len(e) == 3
|
| 321 |
+
if set(e[:2]) == {2, 3}:
|
| 322 |
+
assert e[2] == {"foo": "bar"}
|
| 323 |
+
checked = True
|
| 324 |
+
else:
|
| 325 |
+
assert e[2] == {}
|
| 326 |
+
assert checked
|
| 327 |
+
|
| 328 |
+
for e in ev_def:
|
| 329 |
+
assert len(e) == 3
|
| 330 |
+
if set(e[:2]) == {2, 3}:
|
| 331 |
+
assert e[2] == "bar"
|
| 332 |
+
checked_wt = True
|
| 333 |
+
else:
|
| 334 |
+
assert e[2] == 1
|
| 335 |
+
assert checked_wt
|
| 336 |
+
|
| 337 |
+
def test_iter(self):
|
| 338 |
+
evr = self.eview(self.G)
|
| 339 |
+
ev = evr()
|
| 340 |
+
for u, v in ev:
|
| 341 |
+
pass
|
| 342 |
+
iev = iter(ev)
|
| 343 |
+
assert next(iev) == (0, 1)
|
| 344 |
+
assert iter(ev) != ev
|
| 345 |
+
assert iter(iev) == iev
|
| 346 |
+
|
| 347 |
+
def test_contains(self):
|
| 348 |
+
evr = self.eview(self.G)
|
| 349 |
+
ev = evr()
|
| 350 |
+
if self.G.is_directed():
|
| 351 |
+
assert (1, 2) in ev and (2, 1) not in ev
|
| 352 |
+
else:
|
| 353 |
+
assert (1, 2) in ev and (2, 1) in ev
|
| 354 |
+
assert (1, 4) not in ev
|
| 355 |
+
assert (1, 90) not in ev
|
| 356 |
+
assert (90, 1) not in ev
|
| 357 |
+
|
| 358 |
+
def test_contains_with_nbunch(self):
|
| 359 |
+
evr = self.eview(self.G)
|
| 360 |
+
ev = evr(nbunch=[0, 2])
|
| 361 |
+
if self.G.is_directed():
|
| 362 |
+
assert (0, 1) in ev
|
| 363 |
+
assert (1, 2) not in ev
|
| 364 |
+
assert (2, 3) in ev
|
| 365 |
+
else:
|
| 366 |
+
assert (0, 1) in ev
|
| 367 |
+
assert (1, 2) in ev
|
| 368 |
+
assert (2, 3) in ev
|
| 369 |
+
assert (3, 4) not in ev
|
| 370 |
+
assert (4, 5) not in ev
|
| 371 |
+
assert (5, 6) not in ev
|
| 372 |
+
assert (7, 8) not in ev
|
| 373 |
+
assert (8, 9) not in ev
|
| 374 |
+
|
| 375 |
+
def test_len(self):
|
| 376 |
+
evr = self.eview(self.G)
|
| 377 |
+
ev = evr(data="foo")
|
| 378 |
+
assert len(ev) == 8
|
| 379 |
+
assert len(evr(1)) == 2
|
| 380 |
+
assert len(evr([1, 2, 3])) == 4
|
| 381 |
+
|
| 382 |
+
assert len(self.G.edges(1)) == 2
|
| 383 |
+
assert len(self.G.edges()) == 8
|
| 384 |
+
assert len(self.G.edges) == 8
|
| 385 |
+
|
| 386 |
+
H = self.G.copy()
|
| 387 |
+
H.add_edge(1, 1)
|
| 388 |
+
assert len(H.edges(1)) == 3
|
| 389 |
+
assert len(H.edges()) == 9
|
| 390 |
+
assert len(H.edges) == 9
|
| 391 |
+
|
| 392 |
+
|
| 393 |
+
class TestOutEdgeDataView(TestEdgeDataView):
|
| 394 |
+
@classmethod
|
| 395 |
+
def setup_class(cls):
|
| 396 |
+
cls.G = nx.path_graph(9, create_using=nx.DiGraph())
|
| 397 |
+
cls.eview = nx.reportviews.OutEdgeView
|
| 398 |
+
|
| 399 |
+
def test_repr(self):
|
| 400 |
+
ev = self.eview(self.G)(data=True)
|
| 401 |
+
rep = (
|
| 402 |
+
"OutEdgeDataView([(0, 1, {}), (1, 2, {}), "
|
| 403 |
+
+ "(2, 3, {}), (3, 4, {}), "
|
| 404 |
+
+ "(4, 5, {}), (5, 6, {}), "
|
| 405 |
+
+ "(6, 7, {}), (7, 8, {})])"
|
| 406 |
+
)
|
| 407 |
+
assert repr(ev) == rep
|
| 408 |
+
|
| 409 |
+
def test_len(self):
|
| 410 |
+
evr = self.eview(self.G)
|
| 411 |
+
ev = evr(data="foo")
|
| 412 |
+
assert len(ev) == 8
|
| 413 |
+
assert len(evr(1)) == 1
|
| 414 |
+
assert len(evr([1, 2, 3])) == 3
|
| 415 |
+
|
| 416 |
+
assert len(self.G.edges(1)) == 1
|
| 417 |
+
assert len(self.G.edges()) == 8
|
| 418 |
+
assert len(self.G.edges) == 8
|
| 419 |
+
|
| 420 |
+
H = self.G.copy()
|
| 421 |
+
H.add_edge(1, 1)
|
| 422 |
+
assert len(H.edges(1)) == 2
|
| 423 |
+
assert len(H.edges()) == 9
|
| 424 |
+
assert len(H.edges) == 9
|
| 425 |
+
|
| 426 |
+
def test_contains_with_nbunch(self):
|
| 427 |
+
evr = self.eview(self.G)
|
| 428 |
+
ev = evr(nbunch=[0, 2])
|
| 429 |
+
assert (0, 1) in ev
|
| 430 |
+
assert (1, 2) not in ev
|
| 431 |
+
assert (2, 3) in ev
|
| 432 |
+
assert (3, 4) not in ev
|
| 433 |
+
assert (4, 5) not in ev
|
| 434 |
+
assert (5, 6) not in ev
|
| 435 |
+
assert (7, 8) not in ev
|
| 436 |
+
assert (8, 9) not in ev
|
| 437 |
+
|
| 438 |
+
|
| 439 |
+
class TestInEdgeDataView(TestOutEdgeDataView):
|
| 440 |
+
@classmethod
|
| 441 |
+
def setup_class(cls):
|
| 442 |
+
cls.G = nx.path_graph(9, create_using=nx.DiGraph())
|
| 443 |
+
cls.eview = nx.reportviews.InEdgeView
|
| 444 |
+
|
| 445 |
+
def test_repr(self):
|
| 446 |
+
ev = self.eview(self.G)(data=True)
|
| 447 |
+
rep = (
|
| 448 |
+
"InEdgeDataView([(0, 1, {}), (1, 2, {}), "
|
| 449 |
+
+ "(2, 3, {}), (3, 4, {}), "
|
| 450 |
+
+ "(4, 5, {}), (5, 6, {}), "
|
| 451 |
+
+ "(6, 7, {}), (7, 8, {})])"
|
| 452 |
+
)
|
| 453 |
+
assert repr(ev) == rep
|
| 454 |
+
|
| 455 |
+
def test_contains_with_nbunch(self):
|
| 456 |
+
evr = self.eview(self.G)
|
| 457 |
+
ev = evr(nbunch=[0, 2])
|
| 458 |
+
assert (0, 1) not in ev
|
| 459 |
+
assert (1, 2) in ev
|
| 460 |
+
assert (2, 3) not in ev
|
| 461 |
+
assert (3, 4) not in ev
|
| 462 |
+
assert (4, 5) not in ev
|
| 463 |
+
assert (5, 6) not in ev
|
| 464 |
+
assert (7, 8) not in ev
|
| 465 |
+
assert (8, 9) not in ev
|
| 466 |
+
|
| 467 |
+
|
| 468 |
+
class TestMultiEdgeDataView(TestEdgeDataView):
|
| 469 |
+
@classmethod
|
| 470 |
+
def setup_class(cls):
|
| 471 |
+
cls.G = nx.path_graph(9, create_using=nx.MultiGraph())
|
| 472 |
+
cls.eview = nx.reportviews.MultiEdgeView
|
| 473 |
+
|
| 474 |
+
def modify_edge(self, G, e, **kwds):
|
| 475 |
+
G._adj[e[0]][e[1]][0].update(kwds)
|
| 476 |
+
|
| 477 |
+
def test_repr(self):
|
| 478 |
+
ev = self.eview(self.G)(data=True)
|
| 479 |
+
rep = (
|
| 480 |
+
"MultiEdgeDataView([(0, 1, {}), (1, 2, {}), "
|
| 481 |
+
+ "(2, 3, {}), (3, 4, {}), "
|
| 482 |
+
+ "(4, 5, {}), (5, 6, {}), "
|
| 483 |
+
+ "(6, 7, {}), (7, 8, {})])"
|
| 484 |
+
)
|
| 485 |
+
assert repr(ev) == rep
|
| 486 |
+
|
| 487 |
+
def test_contains_with_nbunch(self):
|
| 488 |
+
evr = self.eview(self.G)
|
| 489 |
+
ev = evr(nbunch=[0, 2])
|
| 490 |
+
assert (0, 1) in ev
|
| 491 |
+
assert (1, 2) in ev
|
| 492 |
+
assert (2, 3) in ev
|
| 493 |
+
assert (3, 4) not in ev
|
| 494 |
+
assert (4, 5) not in ev
|
| 495 |
+
assert (5, 6) not in ev
|
| 496 |
+
assert (7, 8) not in ev
|
| 497 |
+
assert (8, 9) not in ev
|
| 498 |
+
|
| 499 |
+
|
| 500 |
+
class TestOutMultiEdgeDataView(TestOutEdgeDataView):
|
| 501 |
+
@classmethod
|
| 502 |
+
def setup_class(cls):
|
| 503 |
+
cls.G = nx.path_graph(9, create_using=nx.MultiDiGraph())
|
| 504 |
+
cls.eview = nx.reportviews.OutMultiEdgeView
|
| 505 |
+
|
| 506 |
+
def modify_edge(self, G, e, **kwds):
|
| 507 |
+
G._adj[e[0]][e[1]][0].update(kwds)
|
| 508 |
+
|
| 509 |
+
def test_repr(self):
|
| 510 |
+
ev = self.eview(self.G)(data=True)
|
| 511 |
+
rep = (
|
| 512 |
+
"OutMultiEdgeDataView([(0, 1, {}), (1, 2, {}), "
|
| 513 |
+
+ "(2, 3, {}), (3, 4, {}), "
|
| 514 |
+
+ "(4, 5, {}), (5, 6, {}), "
|
| 515 |
+
+ "(6, 7, {}), (7, 8, {})])"
|
| 516 |
+
)
|
| 517 |
+
assert repr(ev) == rep
|
| 518 |
+
|
| 519 |
+
def test_contains_with_nbunch(self):
|
| 520 |
+
evr = self.eview(self.G)
|
| 521 |
+
ev = evr(nbunch=[0, 2])
|
| 522 |
+
assert (0, 1) in ev
|
| 523 |
+
assert (1, 2) not in ev
|
| 524 |
+
assert (2, 3) in ev
|
| 525 |
+
assert (3, 4) not in ev
|
| 526 |
+
assert (4, 5) not in ev
|
| 527 |
+
assert (5, 6) not in ev
|
| 528 |
+
assert (7, 8) not in ev
|
| 529 |
+
assert (8, 9) not in ev
|
| 530 |
+
|
| 531 |
+
|
| 532 |
+
class TestInMultiEdgeDataView(TestOutMultiEdgeDataView):
|
| 533 |
+
@classmethod
|
| 534 |
+
def setup_class(cls):
|
| 535 |
+
cls.G = nx.path_graph(9, create_using=nx.MultiDiGraph())
|
| 536 |
+
cls.eview = nx.reportviews.InMultiEdgeView
|
| 537 |
+
|
| 538 |
+
def test_repr(self):
|
| 539 |
+
ev = self.eview(self.G)(data=True)
|
| 540 |
+
rep = (
|
| 541 |
+
"InMultiEdgeDataView([(0, 1, {}), (1, 2, {}), "
|
| 542 |
+
+ "(2, 3, {}), (3, 4, {}), "
|
| 543 |
+
+ "(4, 5, {}), (5, 6, {}), "
|
| 544 |
+
+ "(6, 7, {}), (7, 8, {})])"
|
| 545 |
+
)
|
| 546 |
+
assert repr(ev) == rep
|
| 547 |
+
|
| 548 |
+
def test_contains_with_nbunch(self):
|
| 549 |
+
evr = self.eview(self.G)
|
| 550 |
+
ev = evr(nbunch=[0, 2])
|
| 551 |
+
assert (0, 1) not in ev
|
| 552 |
+
assert (1, 2) in ev
|
| 553 |
+
assert (2, 3) not in ev
|
| 554 |
+
assert (3, 4) not in ev
|
| 555 |
+
assert (4, 5) not in ev
|
| 556 |
+
assert (5, 6) not in ev
|
| 557 |
+
assert (7, 8) not in ev
|
| 558 |
+
assert (8, 9) not in ev
|
| 559 |
+
|
| 560 |
+
|
| 561 |
+
# Edge Views
|
| 562 |
+
class TestEdgeView:
|
| 563 |
+
@classmethod
|
| 564 |
+
def setup_class(cls):
|
| 565 |
+
cls.G = nx.path_graph(9)
|
| 566 |
+
cls.eview = nx.reportviews.EdgeView
|
| 567 |
+
|
| 568 |
+
def test_pickle(self):
|
| 569 |
+
import pickle
|
| 570 |
+
|
| 571 |
+
ev = self.eview(self.G)
|
| 572 |
+
pev = pickle.loads(pickle.dumps(ev, -1))
|
| 573 |
+
assert ev == pev
|
| 574 |
+
assert ev.__slots__ == pev.__slots__
|
| 575 |
+
|
| 576 |
+
def modify_edge(self, G, e, **kwds):
|
| 577 |
+
G._adj[e[0]][e[1]].update(kwds)
|
| 578 |
+
|
| 579 |
+
def test_str(self):
|
| 580 |
+
ev = self.eview(self.G)
|
| 581 |
+
rep = str([(n, n + 1) for n in range(8)])
|
| 582 |
+
assert str(ev) == rep
|
| 583 |
+
|
| 584 |
+
def test_repr(self):
|
| 585 |
+
ev = self.eview(self.G)
|
| 586 |
+
rep = (
|
| 587 |
+
"EdgeView([(0, 1), (1, 2), (2, 3), (3, 4), "
|
| 588 |
+
+ "(4, 5), (5, 6), (6, 7), (7, 8)])"
|
| 589 |
+
)
|
| 590 |
+
assert repr(ev) == rep
|
| 591 |
+
|
| 592 |
+
def test_getitem(self):
|
| 593 |
+
G = self.G.copy()
|
| 594 |
+
ev = G.edges
|
| 595 |
+
G.edges[0, 1]["foo"] = "bar"
|
| 596 |
+
assert ev[0, 1] == {"foo": "bar"}
|
| 597 |
+
|
| 598 |
+
# slicing
|
| 599 |
+
with pytest.raises(nx.NetworkXError, match=".*does not support slicing"):
|
| 600 |
+
G.edges[0:5]
|
| 601 |
+
|
| 602 |
+
# Invalid edge
|
| 603 |
+
with pytest.raises(KeyError, match=r".*edge.*is not in the graph."):
|
| 604 |
+
G.edges[0, 9]
|
| 605 |
+
|
| 606 |
+
def test_call(self):
|
| 607 |
+
ev = self.eview(self.G)
|
| 608 |
+
assert id(ev) == id(ev())
|
| 609 |
+
assert id(ev) == id(ev(data=False))
|
| 610 |
+
assert id(ev) != id(ev(data=True))
|
| 611 |
+
assert id(ev) != id(ev(nbunch=1))
|
| 612 |
+
|
| 613 |
+
def test_data(self):
|
| 614 |
+
ev = self.eview(self.G)
|
| 615 |
+
assert id(ev) != id(ev.data())
|
| 616 |
+
assert id(ev) == id(ev.data(data=False))
|
| 617 |
+
assert id(ev) != id(ev.data(data=True))
|
| 618 |
+
assert id(ev) != id(ev.data(nbunch=1))
|
| 619 |
+
|
| 620 |
+
def test_iter(self):
|
| 621 |
+
ev = self.eview(self.G)
|
| 622 |
+
for u, v in ev:
|
| 623 |
+
pass
|
| 624 |
+
iev = iter(ev)
|
| 625 |
+
assert next(iev) == (0, 1)
|
| 626 |
+
assert iter(ev) != ev
|
| 627 |
+
assert iter(iev) == iev
|
| 628 |
+
|
| 629 |
+
def test_contains(self):
|
| 630 |
+
ev = self.eview(self.G)
|
| 631 |
+
edv = ev()
|
| 632 |
+
if self.G.is_directed():
|
| 633 |
+
assert (1, 2) in ev and (2, 1) not in ev
|
| 634 |
+
assert (1, 2) in edv and (2, 1) not in edv
|
| 635 |
+
else:
|
| 636 |
+
assert (1, 2) in ev and (2, 1) in ev
|
| 637 |
+
assert (1, 2) in edv and (2, 1) in edv
|
| 638 |
+
assert (1, 4) not in ev
|
| 639 |
+
assert (1, 4) not in edv
|
| 640 |
+
# edge not in graph
|
| 641 |
+
assert (1, 90) not in ev
|
| 642 |
+
assert (90, 1) not in ev
|
| 643 |
+
assert (1, 90) not in edv
|
| 644 |
+
assert (90, 1) not in edv
|
| 645 |
+
|
| 646 |
+
def test_contains_with_nbunch(self):
|
| 647 |
+
ev = self.eview(self.G)
|
| 648 |
+
evn = ev(nbunch=[0, 2])
|
| 649 |
+
assert (0, 1) in evn
|
| 650 |
+
assert (1, 2) in evn
|
| 651 |
+
assert (2, 3) in evn
|
| 652 |
+
assert (3, 4) not in evn
|
| 653 |
+
assert (4, 5) not in evn
|
| 654 |
+
assert (5, 6) not in evn
|
| 655 |
+
assert (7, 8) not in evn
|
| 656 |
+
assert (8, 9) not in evn
|
| 657 |
+
|
| 658 |
+
def test_len(self):
|
| 659 |
+
ev = self.eview(self.G)
|
| 660 |
+
num_ed = 9 if self.G.is_multigraph() else 8
|
| 661 |
+
assert len(ev) == num_ed
|
| 662 |
+
|
| 663 |
+
H = self.G.copy()
|
| 664 |
+
H.add_edge(1, 1)
|
| 665 |
+
assert len(H.edges(1)) == 3 + H.is_multigraph() - H.is_directed()
|
| 666 |
+
assert len(H.edges()) == num_ed + 1
|
| 667 |
+
assert len(H.edges) == num_ed + 1
|
| 668 |
+
|
| 669 |
+
def test_and(self):
|
| 670 |
+
# print("G & H edges:", gnv & hnv)
|
| 671 |
+
ev = self.eview(self.G)
|
| 672 |
+
some_edges = {(0, 1), (1, 0), (0, 2)}
|
| 673 |
+
if self.G.is_directed():
|
| 674 |
+
assert some_edges & ev, {(0, 1)}
|
| 675 |
+
assert ev & some_edges, {(0, 1)}
|
| 676 |
+
else:
|
| 677 |
+
assert ev & some_edges == {(0, 1), (1, 0)}
|
| 678 |
+
assert some_edges & ev == {(0, 1), (1, 0)}
|
| 679 |
+
return
|
| 680 |
+
|
| 681 |
+
def test_or(self):
|
| 682 |
+
# print("G | H edges:", gnv | hnv)
|
| 683 |
+
ev = self.eview(self.G)
|
| 684 |
+
some_edges = {(0, 1), (1, 0), (0, 2)}
|
| 685 |
+
result1 = {(n, n + 1) for n in range(8)}
|
| 686 |
+
result1.update(some_edges)
|
| 687 |
+
result2 = {(n + 1, n) for n in range(8)}
|
| 688 |
+
result2.update(some_edges)
|
| 689 |
+
assert (ev | some_edges) in (result1, result2)
|
| 690 |
+
assert (some_edges | ev) in (result1, result2)
|
| 691 |
+
|
| 692 |
+
def test_xor(self):
|
| 693 |
+
# print("G ^ H edges:", gnv ^ hnv)
|
| 694 |
+
ev = self.eview(self.G)
|
| 695 |
+
some_edges = {(0, 1), (1, 0), (0, 2)}
|
| 696 |
+
if self.G.is_directed():
|
| 697 |
+
result = {(n, n + 1) for n in range(1, 8)}
|
| 698 |
+
result.update({(1, 0), (0, 2)})
|
| 699 |
+
assert ev ^ some_edges == result
|
| 700 |
+
else:
|
| 701 |
+
result = {(n, n + 1) for n in range(1, 8)}
|
| 702 |
+
result.update({(0, 2)})
|
| 703 |
+
assert ev ^ some_edges == result
|
| 704 |
+
return
|
| 705 |
+
|
| 706 |
+
def test_sub(self):
|
| 707 |
+
# print("G - H edges:", gnv - hnv)
|
| 708 |
+
ev = self.eview(self.G)
|
| 709 |
+
some_edges = {(0, 1), (1, 0), (0, 2)}
|
| 710 |
+
result = {(n, n + 1) for n in range(8)}
|
| 711 |
+
result.remove((0, 1))
|
| 712 |
+
assert ev - some_edges, result
|
| 713 |
+
|
| 714 |
+
|
| 715 |
+
class TestOutEdgeView(TestEdgeView):
|
| 716 |
+
@classmethod
|
| 717 |
+
def setup_class(cls):
|
| 718 |
+
cls.G = nx.path_graph(9, nx.DiGraph())
|
| 719 |
+
cls.eview = nx.reportviews.OutEdgeView
|
| 720 |
+
|
| 721 |
+
def test_repr(self):
|
| 722 |
+
ev = self.eview(self.G)
|
| 723 |
+
rep = (
|
| 724 |
+
"OutEdgeView([(0, 1), (1, 2), (2, 3), (3, 4), "
|
| 725 |
+
+ "(4, 5), (5, 6), (6, 7), (7, 8)])"
|
| 726 |
+
)
|
| 727 |
+
assert repr(ev) == rep
|
| 728 |
+
|
| 729 |
+
def test_contains_with_nbunch(self):
|
| 730 |
+
ev = self.eview(self.G)
|
| 731 |
+
evn = ev(nbunch=[0, 2])
|
| 732 |
+
assert (0, 1) in evn
|
| 733 |
+
assert (1, 2) not in evn
|
| 734 |
+
assert (2, 3) in evn
|
| 735 |
+
assert (3, 4) not in evn
|
| 736 |
+
assert (4, 5) not in evn
|
| 737 |
+
assert (5, 6) not in evn
|
| 738 |
+
assert (7, 8) not in evn
|
| 739 |
+
assert (8, 9) not in evn
|
| 740 |
+
|
| 741 |
+
|
| 742 |
+
class TestInEdgeView(TestEdgeView):
|
| 743 |
+
@classmethod
|
| 744 |
+
def setup_class(cls):
|
| 745 |
+
cls.G = nx.path_graph(9, nx.DiGraph())
|
| 746 |
+
cls.eview = nx.reportviews.InEdgeView
|
| 747 |
+
|
| 748 |
+
def test_repr(self):
|
| 749 |
+
ev = self.eview(self.G)
|
| 750 |
+
rep = (
|
| 751 |
+
"InEdgeView([(0, 1), (1, 2), (2, 3), (3, 4), "
|
| 752 |
+
+ "(4, 5), (5, 6), (6, 7), (7, 8)])"
|
| 753 |
+
)
|
| 754 |
+
assert repr(ev) == rep
|
| 755 |
+
|
| 756 |
+
def test_contains_with_nbunch(self):
|
| 757 |
+
ev = self.eview(self.G)
|
| 758 |
+
evn = ev(nbunch=[0, 2])
|
| 759 |
+
assert (0, 1) not in evn
|
| 760 |
+
assert (1, 2) in evn
|
| 761 |
+
assert (2, 3) not in evn
|
| 762 |
+
assert (3, 4) not in evn
|
| 763 |
+
assert (4, 5) not in evn
|
| 764 |
+
assert (5, 6) not in evn
|
| 765 |
+
assert (7, 8) not in evn
|
| 766 |
+
assert (8, 9) not in evn
|
| 767 |
+
|
| 768 |
+
|
| 769 |
+
class TestMultiEdgeView(TestEdgeView):
|
| 770 |
+
@classmethod
|
| 771 |
+
def setup_class(cls):
|
| 772 |
+
cls.G = nx.path_graph(9, nx.MultiGraph())
|
| 773 |
+
cls.G.add_edge(1, 2, key=3, foo="bar")
|
| 774 |
+
cls.eview = nx.reportviews.MultiEdgeView
|
| 775 |
+
|
| 776 |
+
def modify_edge(self, G, e, **kwds):
|
| 777 |
+
if len(e) == 2:
|
| 778 |
+
e = e + (0,)
|
| 779 |
+
G._adj[e[0]][e[1]][e[2]].update(kwds)
|
| 780 |
+
|
| 781 |
+
def test_str(self):
|
| 782 |
+
ev = self.eview(self.G)
|
| 783 |
+
replist = [(n, n + 1, 0) for n in range(8)]
|
| 784 |
+
replist.insert(2, (1, 2, 3))
|
| 785 |
+
rep = str(replist)
|
| 786 |
+
assert str(ev) == rep
|
| 787 |
+
|
| 788 |
+
def test_getitem(self):
|
| 789 |
+
G = self.G.copy()
|
| 790 |
+
ev = G.edges
|
| 791 |
+
G.edges[0, 1, 0]["foo"] = "bar"
|
| 792 |
+
assert ev[0, 1, 0] == {"foo": "bar"}
|
| 793 |
+
|
| 794 |
+
# slicing
|
| 795 |
+
with pytest.raises(nx.NetworkXError):
|
| 796 |
+
G.edges[0:5]
|
| 797 |
+
|
| 798 |
+
def test_repr(self):
|
| 799 |
+
ev = self.eview(self.G)
|
| 800 |
+
rep = (
|
| 801 |
+
"MultiEdgeView([(0, 1, 0), (1, 2, 0), (1, 2, 3), (2, 3, 0), "
|
| 802 |
+
+ "(3, 4, 0), (4, 5, 0), (5, 6, 0), (6, 7, 0), (7, 8, 0)])"
|
| 803 |
+
)
|
| 804 |
+
assert repr(ev) == rep
|
| 805 |
+
|
| 806 |
+
def test_call(self):
|
| 807 |
+
ev = self.eview(self.G)
|
| 808 |
+
assert id(ev) == id(ev(keys=True))
|
| 809 |
+
assert id(ev) == id(ev(data=False, keys=True))
|
| 810 |
+
assert id(ev) != id(ev(keys=False))
|
| 811 |
+
assert id(ev) != id(ev(data=True))
|
| 812 |
+
assert id(ev) != id(ev(nbunch=1))
|
| 813 |
+
|
| 814 |
+
def test_data(self):
|
| 815 |
+
ev = self.eview(self.G)
|
| 816 |
+
assert id(ev) != id(ev.data())
|
| 817 |
+
assert id(ev) == id(ev.data(data=False, keys=True))
|
| 818 |
+
assert id(ev) != id(ev.data(keys=False))
|
| 819 |
+
assert id(ev) != id(ev.data(data=True))
|
| 820 |
+
assert id(ev) != id(ev.data(nbunch=1))
|
| 821 |
+
|
| 822 |
+
def test_iter(self):
|
| 823 |
+
ev = self.eview(self.G)
|
| 824 |
+
for u, v, k in ev:
|
| 825 |
+
pass
|
| 826 |
+
iev = iter(ev)
|
| 827 |
+
assert next(iev) == (0, 1, 0)
|
| 828 |
+
assert iter(ev) != ev
|
| 829 |
+
assert iter(iev) == iev
|
| 830 |
+
|
| 831 |
+
def test_iterkeys(self):
|
| 832 |
+
G = self.G
|
| 833 |
+
evr = self.eview(G)
|
| 834 |
+
ev = evr(keys=True)
|
| 835 |
+
for u, v, k in ev:
|
| 836 |
+
pass
|
| 837 |
+
assert k == 0
|
| 838 |
+
ev = evr(keys=True, data="foo", default=1)
|
| 839 |
+
for u, v, k, wt in ev:
|
| 840 |
+
pass
|
| 841 |
+
assert wt == 1
|
| 842 |
+
|
| 843 |
+
self.modify_edge(G, (2, 3, 0), foo="bar")
|
| 844 |
+
ev = evr(keys=True, data=True)
|
| 845 |
+
for e in ev:
|
| 846 |
+
assert len(e) == 4
|
| 847 |
+
print("edge:", e)
|
| 848 |
+
if set(e[:2]) == {2, 3}:
|
| 849 |
+
print(self.G._adj[2][3])
|
| 850 |
+
assert e[2] == 0
|
| 851 |
+
assert e[3] == {"foo": "bar"}
|
| 852 |
+
checked = True
|
| 853 |
+
elif set(e[:3]) == {1, 2, 3}:
|
| 854 |
+
assert e[2] == 3
|
| 855 |
+
assert e[3] == {"foo": "bar"}
|
| 856 |
+
checked_multi = True
|
| 857 |
+
else:
|
| 858 |
+
assert e[2] == 0
|
| 859 |
+
assert e[3] == {}
|
| 860 |
+
assert checked
|
| 861 |
+
assert checked_multi
|
| 862 |
+
ev = evr(keys=True, data="foo", default=1)
|
| 863 |
+
for e in ev:
|
| 864 |
+
if set(e[:2]) == {1, 2} and e[2] == 3:
|
| 865 |
+
assert e[3] == "bar"
|
| 866 |
+
if set(e[:2]) == {1, 2} and e[2] == 0:
|
| 867 |
+
assert e[3] == 1
|
| 868 |
+
if set(e[:2]) == {2, 3}:
|
| 869 |
+
assert e[2] == 0
|
| 870 |
+
assert e[3] == "bar"
|
| 871 |
+
assert len(e) == 4
|
| 872 |
+
checked_wt = True
|
| 873 |
+
assert checked_wt
|
| 874 |
+
ev = evr(keys=True)
|
| 875 |
+
for e in ev:
|
| 876 |
+
assert len(e) == 3
|
| 877 |
+
elist = sorted([(i, i + 1, 0) for i in range(8)] + [(1, 2, 3)])
|
| 878 |
+
assert sorted(ev) == elist
|
| 879 |
+
# test that the keyword arguments are passed correctly
|
| 880 |
+
ev = evr((1, 2), "foo", keys=True, default=1)
|
| 881 |
+
with pytest.raises(TypeError):
|
| 882 |
+
evr((1, 2), "foo", True, 1)
|
| 883 |
+
with pytest.raises(TypeError):
|
| 884 |
+
evr((1, 2), "foo", True, default=1)
|
| 885 |
+
for e in ev:
|
| 886 |
+
if set(e[:2]) == {1, 2}:
|
| 887 |
+
assert e[2] in {0, 3}
|
| 888 |
+
if e[2] == 3:
|
| 889 |
+
assert e[3] == "bar"
|
| 890 |
+
else: # e[2] == 0
|
| 891 |
+
assert e[3] == 1
|
| 892 |
+
if G.is_directed():
|
| 893 |
+
assert len(list(ev)) == 3
|
| 894 |
+
else:
|
| 895 |
+
assert len(list(ev)) == 4
|
| 896 |
+
|
| 897 |
+
def test_or(self):
|
| 898 |
+
# print("G | H edges:", gnv | hnv)
|
| 899 |
+
ev = self.eview(self.G)
|
| 900 |
+
some_edges = {(0, 1, 0), (1, 0, 0), (0, 2, 0)}
|
| 901 |
+
result = {(n, n + 1, 0) for n in range(8)}
|
| 902 |
+
result.update(some_edges)
|
| 903 |
+
result.update({(1, 2, 3)})
|
| 904 |
+
assert ev | some_edges == result
|
| 905 |
+
assert some_edges | ev == result
|
| 906 |
+
|
| 907 |
+
def test_sub(self):
|
| 908 |
+
# print("G - H edges:", gnv - hnv)
|
| 909 |
+
ev = self.eview(self.G)
|
| 910 |
+
some_edges = {(0, 1, 0), (1, 0, 0), (0, 2, 0)}
|
| 911 |
+
result = {(n, n + 1, 0) for n in range(8)}
|
| 912 |
+
result.remove((0, 1, 0))
|
| 913 |
+
result.update({(1, 2, 3)})
|
| 914 |
+
assert ev - some_edges, result
|
| 915 |
+
assert some_edges - ev, result
|
| 916 |
+
|
| 917 |
+
def test_xor(self):
|
| 918 |
+
# print("G ^ H edges:", gnv ^ hnv)
|
| 919 |
+
ev = self.eview(self.G)
|
| 920 |
+
some_edges = {(0, 1, 0), (1, 0, 0), (0, 2, 0)}
|
| 921 |
+
if self.G.is_directed():
|
| 922 |
+
result = {(n, n + 1, 0) for n in range(1, 8)}
|
| 923 |
+
result.update({(1, 0, 0), (0, 2, 0), (1, 2, 3)})
|
| 924 |
+
assert ev ^ some_edges == result
|
| 925 |
+
assert some_edges ^ ev == result
|
| 926 |
+
else:
|
| 927 |
+
result = {(n, n + 1, 0) for n in range(1, 8)}
|
| 928 |
+
result.update({(0, 2, 0), (1, 2, 3)})
|
| 929 |
+
assert ev ^ some_edges == result
|
| 930 |
+
assert some_edges ^ ev == result
|
| 931 |
+
|
| 932 |
+
def test_and(self):
|
| 933 |
+
# print("G & H edges:", gnv & hnv)
|
| 934 |
+
ev = self.eview(self.G)
|
| 935 |
+
some_edges = {(0, 1, 0), (1, 0, 0), (0, 2, 0)}
|
| 936 |
+
if self.G.is_directed():
|
| 937 |
+
assert ev & some_edges == {(0, 1, 0)}
|
| 938 |
+
assert some_edges & ev == {(0, 1, 0)}
|
| 939 |
+
else:
|
| 940 |
+
assert ev & some_edges == {(0, 1, 0), (1, 0, 0)}
|
| 941 |
+
assert some_edges & ev == {(0, 1, 0), (1, 0, 0)}
|
| 942 |
+
|
| 943 |
+
def test_contains_with_nbunch(self):
|
| 944 |
+
ev = self.eview(self.G)
|
| 945 |
+
evn = ev(nbunch=[0, 2])
|
| 946 |
+
assert (0, 1) in evn
|
| 947 |
+
assert (1, 2) in evn
|
| 948 |
+
assert (2, 3) in evn
|
| 949 |
+
assert (3, 4) not in evn
|
| 950 |
+
assert (4, 5) not in evn
|
| 951 |
+
assert (5, 6) not in evn
|
| 952 |
+
assert (7, 8) not in evn
|
| 953 |
+
assert (8, 9) not in evn
|
| 954 |
+
|
| 955 |
+
|
| 956 |
+
class TestOutMultiEdgeView(TestMultiEdgeView):
|
| 957 |
+
@classmethod
|
| 958 |
+
def setup_class(cls):
|
| 959 |
+
cls.G = nx.path_graph(9, nx.MultiDiGraph())
|
| 960 |
+
cls.G.add_edge(1, 2, key=3, foo="bar")
|
| 961 |
+
cls.eview = nx.reportviews.OutMultiEdgeView
|
| 962 |
+
|
| 963 |
+
def modify_edge(self, G, e, **kwds):
|
| 964 |
+
if len(e) == 2:
|
| 965 |
+
e = e + (0,)
|
| 966 |
+
G._adj[e[0]][e[1]][e[2]].update(kwds)
|
| 967 |
+
|
| 968 |
+
def test_repr(self):
|
| 969 |
+
ev = self.eview(self.G)
|
| 970 |
+
rep = (
|
| 971 |
+
"OutMultiEdgeView([(0, 1, 0), (1, 2, 0), (1, 2, 3), (2, 3, 0),"
|
| 972 |
+
+ " (3, 4, 0), (4, 5, 0), (5, 6, 0), (6, 7, 0), (7, 8, 0)])"
|
| 973 |
+
)
|
| 974 |
+
assert repr(ev) == rep
|
| 975 |
+
|
| 976 |
+
def test_contains_with_nbunch(self):
|
| 977 |
+
ev = self.eview(self.G)
|
| 978 |
+
evn = ev(nbunch=[0, 2])
|
| 979 |
+
assert (0, 1) in evn
|
| 980 |
+
assert (1, 2) not in evn
|
| 981 |
+
assert (2, 3) in evn
|
| 982 |
+
assert (3, 4) not in evn
|
| 983 |
+
assert (4, 5) not in evn
|
| 984 |
+
assert (5, 6) not in evn
|
| 985 |
+
assert (7, 8) not in evn
|
| 986 |
+
assert (8, 9) not in evn
|
| 987 |
+
|
| 988 |
+
|
| 989 |
+
class TestInMultiEdgeView(TestMultiEdgeView):
|
| 990 |
+
@classmethod
|
| 991 |
+
def setup_class(cls):
|
| 992 |
+
cls.G = nx.path_graph(9, nx.MultiDiGraph())
|
| 993 |
+
cls.G.add_edge(1, 2, key=3, foo="bar")
|
| 994 |
+
cls.eview = nx.reportviews.InMultiEdgeView
|
| 995 |
+
|
| 996 |
+
def modify_edge(self, G, e, **kwds):
|
| 997 |
+
if len(e) == 2:
|
| 998 |
+
e = e + (0,)
|
| 999 |
+
G._adj[e[0]][e[1]][e[2]].update(kwds)
|
| 1000 |
+
|
| 1001 |
+
def test_repr(self):
|
| 1002 |
+
ev = self.eview(self.G)
|
| 1003 |
+
rep = (
|
| 1004 |
+
"InMultiEdgeView([(0, 1, 0), (1, 2, 0), (1, 2, 3), (2, 3, 0), "
|
| 1005 |
+
+ "(3, 4, 0), (4, 5, 0), (5, 6, 0), (6, 7, 0), (7, 8, 0)])"
|
| 1006 |
+
)
|
| 1007 |
+
assert repr(ev) == rep
|
| 1008 |
+
|
| 1009 |
+
def test_contains_with_nbunch(self):
|
| 1010 |
+
ev = self.eview(self.G)
|
| 1011 |
+
evn = ev(nbunch=[0, 2])
|
| 1012 |
+
assert (0, 1) not in evn
|
| 1013 |
+
assert (1, 2) in evn
|
| 1014 |
+
assert (2, 3) not in evn
|
| 1015 |
+
assert (3, 4) not in evn
|
| 1016 |
+
assert (4, 5) not in evn
|
| 1017 |
+
assert (5, 6) not in evn
|
| 1018 |
+
assert (7, 8) not in evn
|
| 1019 |
+
assert (8, 9) not in evn
|
| 1020 |
+
|
| 1021 |
+
|
| 1022 |
+
# Degrees
|
| 1023 |
+
class TestDegreeView:
|
| 1024 |
+
GRAPH = nx.Graph
|
| 1025 |
+
dview = nx.reportviews.DegreeView
|
| 1026 |
+
|
| 1027 |
+
@classmethod
|
| 1028 |
+
def setup_class(cls):
|
| 1029 |
+
cls.G = nx.path_graph(6, cls.GRAPH())
|
| 1030 |
+
cls.G.add_edge(1, 3, foo=2)
|
| 1031 |
+
cls.G.add_edge(1, 3, foo=3)
|
| 1032 |
+
|
| 1033 |
+
def test_pickle(self):
|
| 1034 |
+
import pickle
|
| 1035 |
+
|
| 1036 |
+
deg = self.G.degree
|
| 1037 |
+
pdeg = pickle.loads(pickle.dumps(deg, -1))
|
| 1038 |
+
assert dict(deg) == dict(pdeg)
|
| 1039 |
+
|
| 1040 |
+
def test_str(self):
|
| 1041 |
+
dv = self.dview(self.G)
|
| 1042 |
+
rep = str([(0, 1), (1, 3), (2, 2), (3, 3), (4, 2), (5, 1)])
|
| 1043 |
+
assert str(dv) == rep
|
| 1044 |
+
dv = self.G.degree()
|
| 1045 |
+
assert str(dv) == rep
|
| 1046 |
+
|
| 1047 |
+
def test_repr(self):
|
| 1048 |
+
dv = self.dview(self.G)
|
| 1049 |
+
rep = "DegreeView({0: 1, 1: 3, 2: 2, 3: 3, 4: 2, 5: 1})"
|
| 1050 |
+
assert repr(dv) == rep
|
| 1051 |
+
|
| 1052 |
+
def test_iter(self):
|
| 1053 |
+
dv = self.dview(self.G)
|
| 1054 |
+
for n, d in dv:
|
| 1055 |
+
pass
|
| 1056 |
+
idv = iter(dv)
|
| 1057 |
+
assert iter(dv) != dv
|
| 1058 |
+
assert iter(idv) == idv
|
| 1059 |
+
assert next(idv) == (0, dv[0])
|
| 1060 |
+
assert next(idv) == (1, dv[1])
|
| 1061 |
+
# weighted
|
| 1062 |
+
dv = self.dview(self.G, weight="foo")
|
| 1063 |
+
for n, d in dv:
|
| 1064 |
+
pass
|
| 1065 |
+
idv = iter(dv)
|
| 1066 |
+
assert iter(dv) != dv
|
| 1067 |
+
assert iter(idv) == idv
|
| 1068 |
+
assert next(idv) == (0, dv[0])
|
| 1069 |
+
assert next(idv) == (1, dv[1])
|
| 1070 |
+
|
| 1071 |
+
def test_nbunch(self):
|
| 1072 |
+
dv = self.dview(self.G)
|
| 1073 |
+
dvn = dv(0)
|
| 1074 |
+
assert dvn == 1
|
| 1075 |
+
dvn = dv([2, 3])
|
| 1076 |
+
assert sorted(dvn) == [(2, 2), (3, 3)]
|
| 1077 |
+
|
| 1078 |
+
def test_getitem(self):
|
| 1079 |
+
dv = self.dview(self.G)
|
| 1080 |
+
assert dv[0] == 1
|
| 1081 |
+
assert dv[1] == 3
|
| 1082 |
+
assert dv[2] == 2
|
| 1083 |
+
assert dv[3] == 3
|
| 1084 |
+
dv = self.dview(self.G, weight="foo")
|
| 1085 |
+
assert dv[0] == 1
|
| 1086 |
+
assert dv[1] == 5
|
| 1087 |
+
assert dv[2] == 2
|
| 1088 |
+
assert dv[3] == 5
|
| 1089 |
+
|
| 1090 |
+
def test_weight(self):
|
| 1091 |
+
dv = self.dview(self.G)
|
| 1092 |
+
dvw = dv(0, weight="foo")
|
| 1093 |
+
assert dvw == 1
|
| 1094 |
+
dvw = dv(1, weight="foo")
|
| 1095 |
+
assert dvw == 5
|
| 1096 |
+
dvw = dv([2, 3], weight="foo")
|
| 1097 |
+
assert sorted(dvw) == [(2, 2), (3, 5)]
|
| 1098 |
+
dvd = dict(dv(weight="foo"))
|
| 1099 |
+
assert dvd[0] == 1
|
| 1100 |
+
assert dvd[1] == 5
|
| 1101 |
+
assert dvd[2] == 2
|
| 1102 |
+
assert dvd[3] == 5
|
| 1103 |
+
|
| 1104 |
+
def test_len(self):
|
| 1105 |
+
dv = self.dview(self.G)
|
| 1106 |
+
assert len(dv) == 6
|
| 1107 |
+
|
| 1108 |
+
|
| 1109 |
+
class TestDiDegreeView(TestDegreeView):
|
| 1110 |
+
GRAPH = nx.DiGraph
|
| 1111 |
+
dview = nx.reportviews.DiDegreeView
|
| 1112 |
+
|
| 1113 |
+
def test_repr(self):
|
| 1114 |
+
dv = self.G.degree()
|
| 1115 |
+
rep = "DiDegreeView({0: 1, 1: 3, 2: 2, 3: 3, 4: 2, 5: 1})"
|
| 1116 |
+
assert repr(dv) == rep
|
| 1117 |
+
|
| 1118 |
+
|
| 1119 |
+
class TestOutDegreeView(TestDegreeView):
|
| 1120 |
+
GRAPH = nx.DiGraph
|
| 1121 |
+
dview = nx.reportviews.OutDegreeView
|
| 1122 |
+
|
| 1123 |
+
def test_str(self):
|
| 1124 |
+
dv = self.dview(self.G)
|
| 1125 |
+
rep = str([(0, 1), (1, 2), (2, 1), (3, 1), (4, 1), (5, 0)])
|
| 1126 |
+
assert str(dv) == rep
|
| 1127 |
+
dv = self.G.out_degree()
|
| 1128 |
+
assert str(dv) == rep
|
| 1129 |
+
|
| 1130 |
+
def test_repr(self):
|
| 1131 |
+
dv = self.G.out_degree()
|
| 1132 |
+
rep = "OutDegreeView({0: 1, 1: 2, 2: 1, 3: 1, 4: 1, 5: 0})"
|
| 1133 |
+
assert repr(dv) == rep
|
| 1134 |
+
|
| 1135 |
+
def test_nbunch(self):
|
| 1136 |
+
dv = self.dview(self.G)
|
| 1137 |
+
dvn = dv(0)
|
| 1138 |
+
assert dvn == 1
|
| 1139 |
+
dvn = dv([2, 3])
|
| 1140 |
+
assert sorted(dvn) == [(2, 1), (3, 1)]
|
| 1141 |
+
|
| 1142 |
+
def test_getitem(self):
|
| 1143 |
+
dv = self.dview(self.G)
|
| 1144 |
+
assert dv[0] == 1
|
| 1145 |
+
assert dv[1] == 2
|
| 1146 |
+
assert dv[2] == 1
|
| 1147 |
+
assert dv[3] == 1
|
| 1148 |
+
dv = self.dview(self.G, weight="foo")
|
| 1149 |
+
assert dv[0] == 1
|
| 1150 |
+
assert dv[1] == 4
|
| 1151 |
+
assert dv[2] == 1
|
| 1152 |
+
assert dv[3] == 1
|
| 1153 |
+
|
| 1154 |
+
def test_weight(self):
|
| 1155 |
+
dv = self.dview(self.G)
|
| 1156 |
+
dvw = dv(0, weight="foo")
|
| 1157 |
+
assert dvw == 1
|
| 1158 |
+
dvw = dv(1, weight="foo")
|
| 1159 |
+
assert dvw == 4
|
| 1160 |
+
dvw = dv([2, 3], weight="foo")
|
| 1161 |
+
assert sorted(dvw) == [(2, 1), (3, 1)]
|
| 1162 |
+
dvd = dict(dv(weight="foo"))
|
| 1163 |
+
assert dvd[0] == 1
|
| 1164 |
+
assert dvd[1] == 4
|
| 1165 |
+
assert dvd[2] == 1
|
| 1166 |
+
assert dvd[3] == 1
|
| 1167 |
+
|
| 1168 |
+
|
| 1169 |
+
class TestInDegreeView(TestDegreeView):
|
| 1170 |
+
GRAPH = nx.DiGraph
|
| 1171 |
+
dview = nx.reportviews.InDegreeView
|
| 1172 |
+
|
| 1173 |
+
def test_str(self):
|
| 1174 |
+
dv = self.dview(self.G)
|
| 1175 |
+
rep = str([(0, 0), (1, 1), (2, 1), (3, 2), (4, 1), (5, 1)])
|
| 1176 |
+
assert str(dv) == rep
|
| 1177 |
+
dv = self.G.in_degree()
|
| 1178 |
+
assert str(dv) == rep
|
| 1179 |
+
|
| 1180 |
+
def test_repr(self):
|
| 1181 |
+
dv = self.G.in_degree()
|
| 1182 |
+
rep = "InDegreeView({0: 0, 1: 1, 2: 1, 3: 2, 4: 1, 5: 1})"
|
| 1183 |
+
assert repr(dv) == rep
|
| 1184 |
+
|
| 1185 |
+
def test_nbunch(self):
|
| 1186 |
+
dv = self.dview(self.G)
|
| 1187 |
+
dvn = dv(0)
|
| 1188 |
+
assert dvn == 0
|
| 1189 |
+
dvn = dv([2, 3])
|
| 1190 |
+
assert sorted(dvn) == [(2, 1), (3, 2)]
|
| 1191 |
+
|
| 1192 |
+
def test_getitem(self):
|
| 1193 |
+
dv = self.dview(self.G)
|
| 1194 |
+
assert dv[0] == 0
|
| 1195 |
+
assert dv[1] == 1
|
| 1196 |
+
assert dv[2] == 1
|
| 1197 |
+
assert dv[3] == 2
|
| 1198 |
+
dv = self.dview(self.G, weight="foo")
|
| 1199 |
+
assert dv[0] == 0
|
| 1200 |
+
assert dv[1] == 1
|
| 1201 |
+
assert dv[2] == 1
|
| 1202 |
+
assert dv[3] == 4
|
| 1203 |
+
|
| 1204 |
+
def test_weight(self):
|
| 1205 |
+
dv = self.dview(self.G)
|
| 1206 |
+
dvw = dv(0, weight="foo")
|
| 1207 |
+
assert dvw == 0
|
| 1208 |
+
dvw = dv(1, weight="foo")
|
| 1209 |
+
assert dvw == 1
|
| 1210 |
+
dvw = dv([2, 3], weight="foo")
|
| 1211 |
+
assert sorted(dvw) == [(2, 1), (3, 4)]
|
| 1212 |
+
dvd = dict(dv(weight="foo"))
|
| 1213 |
+
assert dvd[0] == 0
|
| 1214 |
+
assert dvd[1] == 1
|
| 1215 |
+
assert dvd[2] == 1
|
| 1216 |
+
assert dvd[3] == 4
|
| 1217 |
+
|
| 1218 |
+
|
| 1219 |
+
class TestMultiDegreeView(TestDegreeView):
|
| 1220 |
+
GRAPH = nx.MultiGraph
|
| 1221 |
+
dview = nx.reportviews.MultiDegreeView
|
| 1222 |
+
|
| 1223 |
+
def test_str(self):
|
| 1224 |
+
dv = self.dview(self.G)
|
| 1225 |
+
rep = str([(0, 1), (1, 4), (2, 2), (3, 4), (4, 2), (5, 1)])
|
| 1226 |
+
assert str(dv) == rep
|
| 1227 |
+
dv = self.G.degree()
|
| 1228 |
+
assert str(dv) == rep
|
| 1229 |
+
|
| 1230 |
+
def test_repr(self):
|
| 1231 |
+
dv = self.G.degree()
|
| 1232 |
+
rep = "MultiDegreeView({0: 1, 1: 4, 2: 2, 3: 4, 4: 2, 5: 1})"
|
| 1233 |
+
assert repr(dv) == rep
|
| 1234 |
+
|
| 1235 |
+
def test_nbunch(self):
|
| 1236 |
+
dv = self.dview(self.G)
|
| 1237 |
+
dvn = dv(0)
|
| 1238 |
+
assert dvn == 1
|
| 1239 |
+
dvn = dv([2, 3])
|
| 1240 |
+
assert sorted(dvn) == [(2, 2), (3, 4)]
|
| 1241 |
+
|
| 1242 |
+
def test_getitem(self):
|
| 1243 |
+
dv = self.dview(self.G)
|
| 1244 |
+
assert dv[0] == 1
|
| 1245 |
+
assert dv[1] == 4
|
| 1246 |
+
assert dv[2] == 2
|
| 1247 |
+
assert dv[3] == 4
|
| 1248 |
+
dv = self.dview(self.G, weight="foo")
|
| 1249 |
+
assert dv[0] == 1
|
| 1250 |
+
assert dv[1] == 7
|
| 1251 |
+
assert dv[2] == 2
|
| 1252 |
+
assert dv[3] == 7
|
| 1253 |
+
|
| 1254 |
+
def test_weight(self):
|
| 1255 |
+
dv = self.dview(self.G)
|
| 1256 |
+
dvw = dv(0, weight="foo")
|
| 1257 |
+
assert dvw == 1
|
| 1258 |
+
dvw = dv(1, weight="foo")
|
| 1259 |
+
assert dvw == 7
|
| 1260 |
+
dvw = dv([2, 3], weight="foo")
|
| 1261 |
+
assert sorted(dvw) == [(2, 2), (3, 7)]
|
| 1262 |
+
dvd = dict(dv(weight="foo"))
|
| 1263 |
+
assert dvd[0] == 1
|
| 1264 |
+
assert dvd[1] == 7
|
| 1265 |
+
assert dvd[2] == 2
|
| 1266 |
+
assert dvd[3] == 7
|
| 1267 |
+
|
| 1268 |
+
|
| 1269 |
+
class TestDiMultiDegreeView(TestMultiDegreeView):
|
| 1270 |
+
GRAPH = nx.MultiDiGraph
|
| 1271 |
+
dview = nx.reportviews.DiMultiDegreeView
|
| 1272 |
+
|
| 1273 |
+
def test_repr(self):
|
| 1274 |
+
dv = self.G.degree()
|
| 1275 |
+
rep = "DiMultiDegreeView({0: 1, 1: 4, 2: 2, 3: 4, 4: 2, 5: 1})"
|
| 1276 |
+
assert repr(dv) == rep
|
| 1277 |
+
|
| 1278 |
+
|
| 1279 |
+
class TestOutMultiDegreeView(TestDegreeView):
|
| 1280 |
+
GRAPH = nx.MultiDiGraph
|
| 1281 |
+
dview = nx.reportviews.OutMultiDegreeView
|
| 1282 |
+
|
| 1283 |
+
def test_str(self):
|
| 1284 |
+
dv = self.dview(self.G)
|
| 1285 |
+
rep = str([(0, 1), (1, 3), (2, 1), (3, 1), (4, 1), (5, 0)])
|
| 1286 |
+
assert str(dv) == rep
|
| 1287 |
+
dv = self.G.out_degree()
|
| 1288 |
+
assert str(dv) == rep
|
| 1289 |
+
|
| 1290 |
+
def test_repr(self):
|
| 1291 |
+
dv = self.G.out_degree()
|
| 1292 |
+
rep = "OutMultiDegreeView({0: 1, 1: 3, 2: 1, 3: 1, 4: 1, 5: 0})"
|
| 1293 |
+
assert repr(dv) == rep
|
| 1294 |
+
|
| 1295 |
+
def test_nbunch(self):
|
| 1296 |
+
dv = self.dview(self.G)
|
| 1297 |
+
dvn = dv(0)
|
| 1298 |
+
assert dvn == 1
|
| 1299 |
+
dvn = dv([2, 3])
|
| 1300 |
+
assert sorted(dvn) == [(2, 1), (3, 1)]
|
| 1301 |
+
|
| 1302 |
+
def test_getitem(self):
|
| 1303 |
+
dv = self.dview(self.G)
|
| 1304 |
+
assert dv[0] == 1
|
| 1305 |
+
assert dv[1] == 3
|
| 1306 |
+
assert dv[2] == 1
|
| 1307 |
+
assert dv[3] == 1
|
| 1308 |
+
dv = self.dview(self.G, weight="foo")
|
| 1309 |
+
assert dv[0] == 1
|
| 1310 |
+
assert dv[1] == 6
|
| 1311 |
+
assert dv[2] == 1
|
| 1312 |
+
assert dv[3] == 1
|
| 1313 |
+
|
| 1314 |
+
def test_weight(self):
|
| 1315 |
+
dv = self.dview(self.G)
|
| 1316 |
+
dvw = dv(0, weight="foo")
|
| 1317 |
+
assert dvw == 1
|
| 1318 |
+
dvw = dv(1, weight="foo")
|
| 1319 |
+
assert dvw == 6
|
| 1320 |
+
dvw = dv([2, 3], weight="foo")
|
| 1321 |
+
assert sorted(dvw) == [(2, 1), (3, 1)]
|
| 1322 |
+
dvd = dict(dv(weight="foo"))
|
| 1323 |
+
assert dvd[0] == 1
|
| 1324 |
+
assert dvd[1] == 6
|
| 1325 |
+
assert dvd[2] == 1
|
| 1326 |
+
assert dvd[3] == 1
|
| 1327 |
+
|
| 1328 |
+
|
| 1329 |
+
class TestInMultiDegreeView(TestDegreeView):
|
| 1330 |
+
GRAPH = nx.MultiDiGraph
|
| 1331 |
+
dview = nx.reportviews.InMultiDegreeView
|
| 1332 |
+
|
| 1333 |
+
def test_str(self):
|
| 1334 |
+
dv = self.dview(self.G)
|
| 1335 |
+
rep = str([(0, 0), (1, 1), (2, 1), (3, 3), (4, 1), (5, 1)])
|
| 1336 |
+
assert str(dv) == rep
|
| 1337 |
+
dv = self.G.in_degree()
|
| 1338 |
+
assert str(dv) == rep
|
| 1339 |
+
|
| 1340 |
+
def test_repr(self):
|
| 1341 |
+
dv = self.G.in_degree()
|
| 1342 |
+
rep = "InMultiDegreeView({0: 0, 1: 1, 2: 1, 3: 3, 4: 1, 5: 1})"
|
| 1343 |
+
assert repr(dv) == rep
|
| 1344 |
+
|
| 1345 |
+
def test_nbunch(self):
|
| 1346 |
+
dv = self.dview(self.G)
|
| 1347 |
+
dvn = dv(0)
|
| 1348 |
+
assert dvn == 0
|
| 1349 |
+
dvn = dv([2, 3])
|
| 1350 |
+
assert sorted(dvn) == [(2, 1), (3, 3)]
|
| 1351 |
+
|
| 1352 |
+
def test_getitem(self):
|
| 1353 |
+
dv = self.dview(self.G)
|
| 1354 |
+
assert dv[0] == 0
|
| 1355 |
+
assert dv[1] == 1
|
| 1356 |
+
assert dv[2] == 1
|
| 1357 |
+
assert dv[3] == 3
|
| 1358 |
+
dv = self.dview(self.G, weight="foo")
|
| 1359 |
+
assert dv[0] == 0
|
| 1360 |
+
assert dv[1] == 1
|
| 1361 |
+
assert dv[2] == 1
|
| 1362 |
+
assert dv[3] == 6
|
| 1363 |
+
|
| 1364 |
+
def test_weight(self):
|
| 1365 |
+
dv = self.dview(self.G)
|
| 1366 |
+
dvw = dv(0, weight="foo")
|
| 1367 |
+
assert dvw == 0
|
| 1368 |
+
dvw = dv(1, weight="foo")
|
| 1369 |
+
assert dvw == 1
|
| 1370 |
+
dvw = dv([2, 3], weight="foo")
|
| 1371 |
+
assert sorted(dvw) == [(2, 1), (3, 6)]
|
| 1372 |
+
dvd = dict(dv(weight="foo"))
|
| 1373 |
+
assert dvd[0] == 0
|
| 1374 |
+
assert dvd[1] == 1
|
| 1375 |
+
assert dvd[2] == 1
|
| 1376 |
+
assert dvd[3] == 6
|
| 1377 |
+
|
| 1378 |
+
|
| 1379 |
+
@pytest.mark.parametrize(
|
| 1380 |
+
("reportview", "err_msg_terms"),
|
| 1381 |
+
(
|
| 1382 |
+
(rv.NodeView, "list(G.nodes"),
|
| 1383 |
+
(rv.NodeDataView, "list(G.nodes.data"),
|
| 1384 |
+
(rv.EdgeView, "list(G.edges"),
|
| 1385 |
+
# Directed EdgeViews
|
| 1386 |
+
(rv.InEdgeView, "list(G.in_edges"),
|
| 1387 |
+
(rv.OutEdgeView, "list(G.edges"),
|
| 1388 |
+
# Multi EdgeViews
|
| 1389 |
+
(rv.MultiEdgeView, "list(G.edges"),
|
| 1390 |
+
(rv.InMultiEdgeView, "list(G.in_edges"),
|
| 1391 |
+
(rv.OutMultiEdgeView, "list(G.edges"),
|
| 1392 |
+
),
|
| 1393 |
+
)
|
| 1394 |
+
def test_slicing_reportviews(reportview, err_msg_terms):
|
| 1395 |
+
G = nx.complete_graph(3)
|
| 1396 |
+
view = reportview(G)
|
| 1397 |
+
with pytest.raises(nx.NetworkXError) as exc:
|
| 1398 |
+
view[0:2]
|
| 1399 |
+
errmsg = str(exc.value)
|
| 1400 |
+
assert type(view).__name__ in errmsg
|
| 1401 |
+
assert err_msg_terms in errmsg
|
| 1402 |
+
|
| 1403 |
+
|
| 1404 |
+
@pytest.mark.parametrize(
|
| 1405 |
+
"graph", [nx.Graph, nx.DiGraph, nx.MultiGraph, nx.MultiDiGraph]
|
| 1406 |
+
)
|
| 1407 |
+
def test_cache_dict_get_set_state(graph):
|
| 1408 |
+
G = nx.path_graph(5, graph())
|
| 1409 |
+
G.nodes, G.edges, G.adj, G.degree
|
| 1410 |
+
if G.is_directed():
|
| 1411 |
+
G.pred, G.succ, G.in_edges, G.out_edges, G.in_degree, G.out_degree
|
| 1412 |
+
cached_dict = G.__dict__
|
| 1413 |
+
assert "nodes" in cached_dict
|
| 1414 |
+
assert "edges" in cached_dict
|
| 1415 |
+
assert "adj" in cached_dict
|
| 1416 |
+
assert "degree" in cached_dict
|
| 1417 |
+
if G.is_directed():
|
| 1418 |
+
assert "pred" in cached_dict
|
| 1419 |
+
assert "succ" in cached_dict
|
| 1420 |
+
assert "in_edges" in cached_dict
|
| 1421 |
+
assert "out_edges" in cached_dict
|
| 1422 |
+
assert "in_degree" in cached_dict
|
| 1423 |
+
assert "out_degree" in cached_dict
|
| 1424 |
+
|
| 1425 |
+
# Raises error if the cached properties and views do not work
|
| 1426 |
+
pickle.loads(pickle.dumps(G, -1))
|
| 1427 |
+
deepcopy(G)
|
| 1428 |
+
|
| 1429 |
+
|
| 1430 |
+
def test_edge_views_inherit_from_EdgeViewABC():
|
| 1431 |
+
all_edge_view_classes = (v for v in dir(nx.reportviews) if "Edge" in v)
|
| 1432 |
+
for eview_class in all_edge_view_classes:
|
| 1433 |
+
assert issubclass(
|
| 1434 |
+
getattr(nx.reportviews, eview_class), nx.reportviews.EdgeViewABC
|
| 1435 |
+
)
|
minigpt2/lib/python3.10/site-packages/networkx/classes/tests/test_special.py
ADDED
|
@@ -0,0 +1,131 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import networkx as nx
|
| 2 |
+
|
| 3 |
+
from .test_digraph import BaseDiGraphTester
|
| 4 |
+
from .test_digraph import TestDiGraph as _TestDiGraph
|
| 5 |
+
from .test_graph import BaseGraphTester
|
| 6 |
+
from .test_graph import TestGraph as _TestGraph
|
| 7 |
+
from .test_multidigraph import TestMultiDiGraph as _TestMultiDiGraph
|
| 8 |
+
from .test_multigraph import TestMultiGraph as _TestMultiGraph
|
| 9 |
+
|
| 10 |
+
|
| 11 |
+
def test_factories():
|
| 12 |
+
class mydict1(dict):
|
| 13 |
+
pass
|
| 14 |
+
|
| 15 |
+
class mydict2(dict):
|
| 16 |
+
pass
|
| 17 |
+
|
| 18 |
+
class mydict3(dict):
|
| 19 |
+
pass
|
| 20 |
+
|
| 21 |
+
class mydict4(dict):
|
| 22 |
+
pass
|
| 23 |
+
|
| 24 |
+
class mydict5(dict):
|
| 25 |
+
pass
|
| 26 |
+
|
| 27 |
+
for Graph in (nx.Graph, nx.DiGraph, nx.MultiGraph, nx.MultiDiGraph):
|
| 28 |
+
# print("testing class: ", Graph.__name__)
|
| 29 |
+
class MyGraph(Graph):
|
| 30 |
+
node_dict_factory = mydict1
|
| 31 |
+
adjlist_outer_dict_factory = mydict2
|
| 32 |
+
adjlist_inner_dict_factory = mydict3
|
| 33 |
+
edge_key_dict_factory = mydict4
|
| 34 |
+
edge_attr_dict_factory = mydict5
|
| 35 |
+
|
| 36 |
+
G = MyGraph()
|
| 37 |
+
assert isinstance(G._node, mydict1)
|
| 38 |
+
assert isinstance(G._adj, mydict2)
|
| 39 |
+
G.add_node(1)
|
| 40 |
+
assert isinstance(G._adj[1], mydict3)
|
| 41 |
+
if G.is_directed():
|
| 42 |
+
assert isinstance(G._pred, mydict2)
|
| 43 |
+
assert isinstance(G._succ, mydict2)
|
| 44 |
+
assert isinstance(G._pred[1], mydict3)
|
| 45 |
+
G.add_edge(1, 2)
|
| 46 |
+
if G.is_multigraph():
|
| 47 |
+
assert isinstance(G._adj[1][2], mydict4)
|
| 48 |
+
assert isinstance(G._adj[1][2][0], mydict5)
|
| 49 |
+
else:
|
| 50 |
+
assert isinstance(G._adj[1][2], mydict5)
|
| 51 |
+
|
| 52 |
+
|
| 53 |
+
class TestSpecialGraph(_TestGraph):
|
| 54 |
+
def setup_method(self):
|
| 55 |
+
_TestGraph.setup_method(self)
|
| 56 |
+
self.Graph = nx.Graph
|
| 57 |
+
|
| 58 |
+
|
| 59 |
+
class TestThinGraph(BaseGraphTester):
|
| 60 |
+
def setup_method(self):
|
| 61 |
+
all_edge_dict = {"weight": 1}
|
| 62 |
+
|
| 63 |
+
class MyGraph(nx.Graph):
|
| 64 |
+
def edge_attr_dict_factory(self):
|
| 65 |
+
return all_edge_dict
|
| 66 |
+
|
| 67 |
+
self.Graph = MyGraph
|
| 68 |
+
# build dict-of-dict-of-dict K3
|
| 69 |
+
ed1, ed2, ed3 = (all_edge_dict, all_edge_dict, all_edge_dict)
|
| 70 |
+
self.k3adj = {0: {1: ed1, 2: ed2}, 1: {0: ed1, 2: ed3}, 2: {0: ed2, 1: ed3}}
|
| 71 |
+
self.k3edges = [(0, 1), (0, 2), (1, 2)]
|
| 72 |
+
self.k3nodes = [0, 1, 2]
|
| 73 |
+
self.K3 = self.Graph()
|
| 74 |
+
self.K3._adj = self.k3adj
|
| 75 |
+
self.K3._node = {}
|
| 76 |
+
self.K3._node[0] = {}
|
| 77 |
+
self.K3._node[1] = {}
|
| 78 |
+
self.K3._node[2] = {}
|
| 79 |
+
|
| 80 |
+
|
| 81 |
+
class TestSpecialDiGraph(_TestDiGraph):
|
| 82 |
+
def setup_method(self):
|
| 83 |
+
_TestDiGraph.setup_method(self)
|
| 84 |
+
self.Graph = nx.DiGraph
|
| 85 |
+
|
| 86 |
+
|
| 87 |
+
class TestThinDiGraph(BaseDiGraphTester):
|
| 88 |
+
def setup_method(self):
|
| 89 |
+
all_edge_dict = {"weight": 1}
|
| 90 |
+
|
| 91 |
+
class MyGraph(nx.DiGraph):
|
| 92 |
+
def edge_attr_dict_factory(self):
|
| 93 |
+
return all_edge_dict
|
| 94 |
+
|
| 95 |
+
self.Graph = MyGraph
|
| 96 |
+
# build dict-of-dict-of-dict K3
|
| 97 |
+
ed1, ed2, ed3 = (all_edge_dict, all_edge_dict, all_edge_dict)
|
| 98 |
+
ed4, ed5, ed6 = (all_edge_dict, all_edge_dict, all_edge_dict)
|
| 99 |
+
self.k3adj = {0: {1: ed1, 2: ed2}, 1: {0: ed3, 2: ed4}, 2: {0: ed5, 1: ed6}}
|
| 100 |
+
self.k3edges = [(0, 1), (0, 2), (1, 2)]
|
| 101 |
+
self.k3nodes = [0, 1, 2]
|
| 102 |
+
self.K3 = self.Graph()
|
| 103 |
+
self.K3._succ = self.k3adj
|
| 104 |
+
# K3._adj is synced with K3._succ
|
| 105 |
+
self.K3._pred = {0: {1: ed3, 2: ed5}, 1: {0: ed1, 2: ed6}, 2: {0: ed2, 1: ed4}}
|
| 106 |
+
self.K3._node = {}
|
| 107 |
+
self.K3._node[0] = {}
|
| 108 |
+
self.K3._node[1] = {}
|
| 109 |
+
self.K3._node[2] = {}
|
| 110 |
+
|
| 111 |
+
ed1, ed2 = (all_edge_dict, all_edge_dict)
|
| 112 |
+
self.P3 = self.Graph()
|
| 113 |
+
self.P3._succ = {0: {1: ed1}, 1: {2: ed2}, 2: {}}
|
| 114 |
+
# P3._adj is synced with P3._succ
|
| 115 |
+
self.P3._pred = {0: {}, 1: {0: ed1}, 2: {1: ed2}}
|
| 116 |
+
self.P3._node = {}
|
| 117 |
+
self.P3._node[0] = {}
|
| 118 |
+
self.P3._node[1] = {}
|
| 119 |
+
self.P3._node[2] = {}
|
| 120 |
+
|
| 121 |
+
|
| 122 |
+
class TestSpecialMultiGraph(_TestMultiGraph):
|
| 123 |
+
def setup_method(self):
|
| 124 |
+
_TestMultiGraph.setup_method(self)
|
| 125 |
+
self.Graph = nx.MultiGraph
|
| 126 |
+
|
| 127 |
+
|
| 128 |
+
class TestSpecialMultiDiGraph(_TestMultiDiGraph):
|
| 129 |
+
def setup_method(self):
|
| 130 |
+
_TestMultiDiGraph.setup_method(self)
|
| 131 |
+
self.Graph = nx.MultiDiGraph
|
minigpt2/lib/python3.10/site-packages/networkx/classes/tests/test_subgraphviews.py
ADDED
|
@@ -0,0 +1,362 @@
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|
|
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|
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|
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|
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|
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|
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|
|
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|
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|
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|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import pytest
|
| 2 |
+
|
| 3 |
+
import networkx as nx
|
| 4 |
+
from networkx.utils import edges_equal
|
| 5 |
+
|
| 6 |
+
|
| 7 |
+
class TestSubGraphView:
|
| 8 |
+
gview = staticmethod(nx.subgraph_view)
|
| 9 |
+
graph = nx.Graph
|
| 10 |
+
hide_edges_filter = staticmethod(nx.filters.hide_edges)
|
| 11 |
+
show_edges_filter = staticmethod(nx.filters.show_edges)
|
| 12 |
+
|
| 13 |
+
@classmethod
|
| 14 |
+
def setup_class(cls):
|
| 15 |
+
cls.G = nx.path_graph(9, create_using=cls.graph())
|
| 16 |
+
cls.hide_edges_w_hide_nodes = {(3, 4), (4, 5), (5, 6)}
|
| 17 |
+
|
| 18 |
+
def test_hidden_nodes(self):
|
| 19 |
+
hide_nodes = [4, 5, 111]
|
| 20 |
+
nodes_gone = nx.filters.hide_nodes(hide_nodes)
|
| 21 |
+
gview = self.gview
|
| 22 |
+
G = gview(self.G, filter_node=nodes_gone)
|
| 23 |
+
assert self.G.nodes - G.nodes == {4, 5}
|
| 24 |
+
assert self.G.edges - G.edges == self.hide_edges_w_hide_nodes
|
| 25 |
+
if G.is_directed():
|
| 26 |
+
assert list(G[3]) == []
|
| 27 |
+
assert list(G[2]) == [3]
|
| 28 |
+
else:
|
| 29 |
+
assert list(G[3]) == [2]
|
| 30 |
+
assert set(G[2]) == {1, 3}
|
| 31 |
+
pytest.raises(KeyError, G.__getitem__, 4)
|
| 32 |
+
pytest.raises(KeyError, G.__getitem__, 112)
|
| 33 |
+
pytest.raises(KeyError, G.__getitem__, 111)
|
| 34 |
+
assert G.degree(3) == (3 if G.is_multigraph() else 1)
|
| 35 |
+
assert G.size() == (7 if G.is_multigraph() else 5)
|
| 36 |
+
|
| 37 |
+
def test_hidden_edges(self):
|
| 38 |
+
hide_edges = [(2, 3), (8, 7), (222, 223)]
|
| 39 |
+
edges_gone = self.hide_edges_filter(hide_edges)
|
| 40 |
+
gview = self.gview
|
| 41 |
+
G = gview(self.G, filter_edge=edges_gone)
|
| 42 |
+
assert self.G.nodes == G.nodes
|
| 43 |
+
if G.is_directed():
|
| 44 |
+
assert self.G.edges - G.edges == {(2, 3)}
|
| 45 |
+
assert list(G[2]) == []
|
| 46 |
+
assert list(G.pred[3]) == []
|
| 47 |
+
assert list(G.pred[2]) == [1]
|
| 48 |
+
assert G.size() == 7
|
| 49 |
+
else:
|
| 50 |
+
assert self.G.edges - G.edges == {(2, 3), (7, 8)}
|
| 51 |
+
assert list(G[2]) == [1]
|
| 52 |
+
assert G.size() == 6
|
| 53 |
+
assert list(G[3]) == [4]
|
| 54 |
+
pytest.raises(KeyError, G.__getitem__, 221)
|
| 55 |
+
pytest.raises(KeyError, G.__getitem__, 222)
|
| 56 |
+
assert G.degree(3) == 1
|
| 57 |
+
|
| 58 |
+
def test_shown_node(self):
|
| 59 |
+
induced_subgraph = nx.filters.show_nodes([2, 3, 111])
|
| 60 |
+
gview = self.gview
|
| 61 |
+
G = gview(self.G, filter_node=induced_subgraph)
|
| 62 |
+
assert set(G.nodes) == {2, 3}
|
| 63 |
+
if G.is_directed():
|
| 64 |
+
assert list(G[3]) == []
|
| 65 |
+
else:
|
| 66 |
+
assert list(G[3]) == [2]
|
| 67 |
+
assert list(G[2]) == [3]
|
| 68 |
+
pytest.raises(KeyError, G.__getitem__, 4)
|
| 69 |
+
pytest.raises(KeyError, G.__getitem__, 112)
|
| 70 |
+
pytest.raises(KeyError, G.__getitem__, 111)
|
| 71 |
+
assert G.degree(3) == (3 if G.is_multigraph() else 1)
|
| 72 |
+
assert G.size() == (3 if G.is_multigraph() else 1)
|
| 73 |
+
|
| 74 |
+
def test_shown_edges(self):
|
| 75 |
+
show_edges = [(2, 3), (8, 7), (222, 223)]
|
| 76 |
+
edge_subgraph = self.show_edges_filter(show_edges)
|
| 77 |
+
G = self.gview(self.G, filter_edge=edge_subgraph)
|
| 78 |
+
assert self.G.nodes == G.nodes
|
| 79 |
+
if G.is_directed():
|
| 80 |
+
assert G.edges == {(2, 3)}
|
| 81 |
+
assert list(G[3]) == []
|
| 82 |
+
assert list(G[2]) == [3]
|
| 83 |
+
assert list(G.pred[3]) == [2]
|
| 84 |
+
assert list(G.pred[2]) == []
|
| 85 |
+
assert G.size() == 1
|
| 86 |
+
else:
|
| 87 |
+
assert G.edges == {(2, 3), (7, 8)}
|
| 88 |
+
assert list(G[3]) == [2]
|
| 89 |
+
assert list(G[2]) == [3]
|
| 90 |
+
assert G.size() == 2
|
| 91 |
+
pytest.raises(KeyError, G.__getitem__, 221)
|
| 92 |
+
pytest.raises(KeyError, G.__getitem__, 222)
|
| 93 |
+
assert G.degree(3) == 1
|
| 94 |
+
|
| 95 |
+
|
| 96 |
+
class TestSubDiGraphView(TestSubGraphView):
|
| 97 |
+
gview = staticmethod(nx.subgraph_view)
|
| 98 |
+
graph = nx.DiGraph
|
| 99 |
+
hide_edges_filter = staticmethod(nx.filters.hide_diedges)
|
| 100 |
+
show_edges_filter = staticmethod(nx.filters.show_diedges)
|
| 101 |
+
hide_edges = [(2, 3), (8, 7), (222, 223)]
|
| 102 |
+
excluded = {(2, 3), (3, 4), (4, 5), (5, 6)}
|
| 103 |
+
|
| 104 |
+
def test_inoutedges(self):
|
| 105 |
+
edges_gone = self.hide_edges_filter(self.hide_edges)
|
| 106 |
+
hide_nodes = [4, 5, 111]
|
| 107 |
+
nodes_gone = nx.filters.hide_nodes(hide_nodes)
|
| 108 |
+
G = self.gview(self.G, filter_node=nodes_gone, filter_edge=edges_gone)
|
| 109 |
+
|
| 110 |
+
assert self.G.in_edges - G.in_edges == self.excluded
|
| 111 |
+
assert self.G.out_edges - G.out_edges == self.excluded
|
| 112 |
+
|
| 113 |
+
def test_pred(self):
|
| 114 |
+
edges_gone = self.hide_edges_filter(self.hide_edges)
|
| 115 |
+
hide_nodes = [4, 5, 111]
|
| 116 |
+
nodes_gone = nx.filters.hide_nodes(hide_nodes)
|
| 117 |
+
G = self.gview(self.G, filter_node=nodes_gone, filter_edge=edges_gone)
|
| 118 |
+
|
| 119 |
+
assert list(G.pred[2]) == [1]
|
| 120 |
+
assert list(G.pred[6]) == []
|
| 121 |
+
|
| 122 |
+
def test_inout_degree(self):
|
| 123 |
+
edges_gone = self.hide_edges_filter(self.hide_edges)
|
| 124 |
+
hide_nodes = [4, 5, 111]
|
| 125 |
+
nodes_gone = nx.filters.hide_nodes(hide_nodes)
|
| 126 |
+
G = self.gview(self.G, filter_node=nodes_gone, filter_edge=edges_gone)
|
| 127 |
+
|
| 128 |
+
assert G.degree(2) == 1
|
| 129 |
+
assert G.out_degree(2) == 0
|
| 130 |
+
assert G.in_degree(2) == 1
|
| 131 |
+
assert G.size() == 4
|
| 132 |
+
|
| 133 |
+
|
| 134 |
+
# multigraph
|
| 135 |
+
class TestMultiGraphView(TestSubGraphView):
|
| 136 |
+
gview = staticmethod(nx.subgraph_view)
|
| 137 |
+
graph = nx.MultiGraph
|
| 138 |
+
hide_edges_filter = staticmethod(nx.filters.hide_multiedges)
|
| 139 |
+
show_edges_filter = staticmethod(nx.filters.show_multiedges)
|
| 140 |
+
|
| 141 |
+
@classmethod
|
| 142 |
+
def setup_class(cls):
|
| 143 |
+
cls.G = nx.path_graph(9, create_using=cls.graph())
|
| 144 |
+
multiedges = {(2, 3, 4), (2, 3, 5)}
|
| 145 |
+
cls.G.add_edges_from(multiedges)
|
| 146 |
+
cls.hide_edges_w_hide_nodes = {(3, 4, 0), (4, 5, 0), (5, 6, 0)}
|
| 147 |
+
|
| 148 |
+
def test_hidden_edges(self):
|
| 149 |
+
hide_edges = [(2, 3, 4), (2, 3, 3), (8, 7, 0), (222, 223, 0)]
|
| 150 |
+
edges_gone = self.hide_edges_filter(hide_edges)
|
| 151 |
+
G = self.gview(self.G, filter_edge=edges_gone)
|
| 152 |
+
assert self.G.nodes == G.nodes
|
| 153 |
+
if G.is_directed():
|
| 154 |
+
assert self.G.edges - G.edges == {(2, 3, 4)}
|
| 155 |
+
assert list(G[3]) == [4]
|
| 156 |
+
assert list(G[2]) == [3]
|
| 157 |
+
assert list(G.pred[3]) == [2] # only one 2 but two edges
|
| 158 |
+
assert list(G.pred[2]) == [1]
|
| 159 |
+
assert G.size() == 9
|
| 160 |
+
else:
|
| 161 |
+
assert self.G.edges - G.edges == {(2, 3, 4), (7, 8, 0)}
|
| 162 |
+
assert list(G[3]) == [2, 4]
|
| 163 |
+
assert list(G[2]) == [1, 3]
|
| 164 |
+
assert G.size() == 8
|
| 165 |
+
assert G.degree(3) == 3
|
| 166 |
+
pytest.raises(KeyError, G.__getitem__, 221)
|
| 167 |
+
pytest.raises(KeyError, G.__getitem__, 222)
|
| 168 |
+
|
| 169 |
+
def test_shown_edges(self):
|
| 170 |
+
show_edges = [(2, 3, 4), (2, 3, 3), (8, 7, 0), (222, 223, 0)]
|
| 171 |
+
edge_subgraph = self.show_edges_filter(show_edges)
|
| 172 |
+
G = self.gview(self.G, filter_edge=edge_subgraph)
|
| 173 |
+
assert self.G.nodes == G.nodes
|
| 174 |
+
if G.is_directed():
|
| 175 |
+
assert G.edges == {(2, 3, 4)}
|
| 176 |
+
assert list(G[3]) == []
|
| 177 |
+
assert list(G.pred[3]) == [2]
|
| 178 |
+
assert list(G.pred[2]) == []
|
| 179 |
+
assert G.size() == 1
|
| 180 |
+
else:
|
| 181 |
+
assert G.edges == {(2, 3, 4), (7, 8, 0)}
|
| 182 |
+
assert G.size() == 2
|
| 183 |
+
assert list(G[3]) == [2]
|
| 184 |
+
assert G.degree(3) == 1
|
| 185 |
+
assert list(G[2]) == [3]
|
| 186 |
+
pytest.raises(KeyError, G.__getitem__, 221)
|
| 187 |
+
pytest.raises(KeyError, G.__getitem__, 222)
|
| 188 |
+
|
| 189 |
+
|
| 190 |
+
# multidigraph
|
| 191 |
+
class TestMultiDiGraphView(TestMultiGraphView, TestSubDiGraphView):
|
| 192 |
+
gview = staticmethod(nx.subgraph_view)
|
| 193 |
+
graph = nx.MultiDiGraph
|
| 194 |
+
hide_edges_filter = staticmethod(nx.filters.hide_multidiedges)
|
| 195 |
+
show_edges_filter = staticmethod(nx.filters.show_multidiedges)
|
| 196 |
+
hide_edges = [(2, 3, 0), (8, 7, 0), (222, 223, 0)]
|
| 197 |
+
excluded = {(2, 3, 0), (3, 4, 0), (4, 5, 0), (5, 6, 0)}
|
| 198 |
+
|
| 199 |
+
def test_inout_degree(self):
|
| 200 |
+
edges_gone = self.hide_edges_filter(self.hide_edges)
|
| 201 |
+
hide_nodes = [4, 5, 111]
|
| 202 |
+
nodes_gone = nx.filters.hide_nodes(hide_nodes)
|
| 203 |
+
G = self.gview(self.G, filter_node=nodes_gone, filter_edge=edges_gone)
|
| 204 |
+
|
| 205 |
+
assert G.degree(2) == 3
|
| 206 |
+
assert G.out_degree(2) == 2
|
| 207 |
+
assert G.in_degree(2) == 1
|
| 208 |
+
assert G.size() == 6
|
| 209 |
+
|
| 210 |
+
|
| 211 |
+
# induced_subgraph
|
| 212 |
+
class TestInducedSubGraph:
|
| 213 |
+
@classmethod
|
| 214 |
+
def setup_class(cls):
|
| 215 |
+
cls.K3 = G = nx.complete_graph(3)
|
| 216 |
+
G.graph["foo"] = []
|
| 217 |
+
G.nodes[0]["foo"] = []
|
| 218 |
+
G.remove_edge(1, 2)
|
| 219 |
+
ll = []
|
| 220 |
+
G.add_edge(1, 2, foo=ll)
|
| 221 |
+
G.add_edge(2, 1, foo=ll)
|
| 222 |
+
|
| 223 |
+
def test_full_graph(self):
|
| 224 |
+
G = self.K3
|
| 225 |
+
H = nx.induced_subgraph(G, [0, 1, 2, 5])
|
| 226 |
+
assert H.name == G.name
|
| 227 |
+
self.graphs_equal(H, G)
|
| 228 |
+
self.same_attrdict(H, G)
|
| 229 |
+
|
| 230 |
+
def test_partial_subgraph(self):
|
| 231 |
+
G = self.K3
|
| 232 |
+
H = nx.induced_subgraph(G, 0)
|
| 233 |
+
assert dict(H.adj) == {0: {}}
|
| 234 |
+
assert dict(G.adj) != {0: {}}
|
| 235 |
+
|
| 236 |
+
H = nx.induced_subgraph(G, [0, 1])
|
| 237 |
+
assert dict(H.adj) == {0: {1: {}}, 1: {0: {}}}
|
| 238 |
+
|
| 239 |
+
def same_attrdict(self, H, G):
|
| 240 |
+
old_foo = H[1][2]["foo"]
|
| 241 |
+
H.edges[1, 2]["foo"] = "baz"
|
| 242 |
+
assert G.edges == H.edges
|
| 243 |
+
H.edges[1, 2]["foo"] = old_foo
|
| 244 |
+
assert G.edges == H.edges
|
| 245 |
+
old_foo = H.nodes[0]["foo"]
|
| 246 |
+
H.nodes[0]["foo"] = "baz"
|
| 247 |
+
assert G.nodes == H.nodes
|
| 248 |
+
H.nodes[0]["foo"] = old_foo
|
| 249 |
+
assert G.nodes == H.nodes
|
| 250 |
+
|
| 251 |
+
def graphs_equal(self, H, G):
|
| 252 |
+
assert G._adj == H._adj
|
| 253 |
+
assert G._node == H._node
|
| 254 |
+
assert G.graph == H.graph
|
| 255 |
+
assert G.name == H.name
|
| 256 |
+
if not G.is_directed() and not H.is_directed():
|
| 257 |
+
assert H._adj[1][2] is H._adj[2][1]
|
| 258 |
+
assert G._adj[1][2] is G._adj[2][1]
|
| 259 |
+
else: # at least one is directed
|
| 260 |
+
if not G.is_directed():
|
| 261 |
+
G._pred = G._adj
|
| 262 |
+
G._succ = G._adj
|
| 263 |
+
if not H.is_directed():
|
| 264 |
+
H._pred = H._adj
|
| 265 |
+
H._succ = H._adj
|
| 266 |
+
assert G._pred == H._pred
|
| 267 |
+
assert G._succ == H._succ
|
| 268 |
+
assert H._succ[1][2] is H._pred[2][1]
|
| 269 |
+
assert G._succ[1][2] is G._pred[2][1]
|
| 270 |
+
|
| 271 |
+
|
| 272 |
+
# edge_subgraph
|
| 273 |
+
class TestEdgeSubGraph:
|
| 274 |
+
@classmethod
|
| 275 |
+
def setup_class(cls):
|
| 276 |
+
# Create a path graph on five nodes.
|
| 277 |
+
cls.G = G = nx.path_graph(5)
|
| 278 |
+
# Add some node, edge, and graph attributes.
|
| 279 |
+
for i in range(5):
|
| 280 |
+
G.nodes[i]["name"] = f"node{i}"
|
| 281 |
+
G.edges[0, 1]["name"] = "edge01"
|
| 282 |
+
G.edges[3, 4]["name"] = "edge34"
|
| 283 |
+
G.graph["name"] = "graph"
|
| 284 |
+
# Get the subgraph induced by the first and last edges.
|
| 285 |
+
cls.H = nx.edge_subgraph(G, [(0, 1), (3, 4)])
|
| 286 |
+
|
| 287 |
+
def test_correct_nodes(self):
|
| 288 |
+
"""Tests that the subgraph has the correct nodes."""
|
| 289 |
+
assert [(0, "node0"), (1, "node1"), (3, "node3"), (4, "node4")] == sorted(
|
| 290 |
+
self.H.nodes.data("name")
|
| 291 |
+
)
|
| 292 |
+
|
| 293 |
+
def test_correct_edges(self):
|
| 294 |
+
"""Tests that the subgraph has the correct edges."""
|
| 295 |
+
assert edges_equal(
|
| 296 |
+
[(0, 1, "edge01"), (3, 4, "edge34")], self.H.edges.data("name")
|
| 297 |
+
)
|
| 298 |
+
|
| 299 |
+
def test_add_node(self):
|
| 300 |
+
"""Tests that adding a node to the original graph does not
|
| 301 |
+
affect the nodes of the subgraph.
|
| 302 |
+
|
| 303 |
+
"""
|
| 304 |
+
self.G.add_node(5)
|
| 305 |
+
assert [0, 1, 3, 4] == sorted(self.H.nodes)
|
| 306 |
+
self.G.remove_node(5)
|
| 307 |
+
|
| 308 |
+
def test_remove_node(self):
|
| 309 |
+
"""Tests that removing a node in the original graph
|
| 310 |
+
removes the nodes of the subgraph.
|
| 311 |
+
|
| 312 |
+
"""
|
| 313 |
+
self.G.remove_node(0)
|
| 314 |
+
assert [1, 3, 4] == sorted(self.H.nodes)
|
| 315 |
+
self.G.add_node(0, name="node0")
|
| 316 |
+
self.G.add_edge(0, 1, name="edge01")
|
| 317 |
+
|
| 318 |
+
def test_node_attr_dict(self):
|
| 319 |
+
"""Tests that the node attribute dictionary of the two graphs is
|
| 320 |
+
the same object.
|
| 321 |
+
|
| 322 |
+
"""
|
| 323 |
+
for v in self.H:
|
| 324 |
+
assert self.G.nodes[v] == self.H.nodes[v]
|
| 325 |
+
# Making a change to G should make a change in H and vice versa.
|
| 326 |
+
self.G.nodes[0]["name"] = "foo"
|
| 327 |
+
assert self.G.nodes[0] == self.H.nodes[0]
|
| 328 |
+
self.H.nodes[1]["name"] = "bar"
|
| 329 |
+
assert self.G.nodes[1] == self.H.nodes[1]
|
| 330 |
+
# Revert the change, so tests pass with pytest-randomly
|
| 331 |
+
self.G.nodes[0]["name"] = "node0"
|
| 332 |
+
self.H.nodes[1]["name"] = "node1"
|
| 333 |
+
|
| 334 |
+
def test_edge_attr_dict(self):
|
| 335 |
+
"""Tests that the edge attribute dictionary of the two graphs is
|
| 336 |
+
the same object.
|
| 337 |
+
|
| 338 |
+
"""
|
| 339 |
+
for u, v in self.H.edges():
|
| 340 |
+
assert self.G.edges[u, v] == self.H.edges[u, v]
|
| 341 |
+
# Making a change to G should make a change in H and vice versa.
|
| 342 |
+
self.G.edges[0, 1]["name"] = "foo"
|
| 343 |
+
assert self.G.edges[0, 1]["name"] == self.H.edges[0, 1]["name"]
|
| 344 |
+
self.H.edges[3, 4]["name"] = "bar"
|
| 345 |
+
assert self.G.edges[3, 4]["name"] == self.H.edges[3, 4]["name"]
|
| 346 |
+
# Revert the change, so tests pass with pytest-randomly
|
| 347 |
+
self.G.edges[0, 1]["name"] = "edge01"
|
| 348 |
+
self.H.edges[3, 4]["name"] = "edge34"
|
| 349 |
+
|
| 350 |
+
def test_graph_attr_dict(self):
|
| 351 |
+
"""Tests that the graph attribute dictionary of the two graphs
|
| 352 |
+
is the same object.
|
| 353 |
+
|
| 354 |
+
"""
|
| 355 |
+
assert self.G.graph is self.H.graph
|
| 356 |
+
|
| 357 |
+
def test_readonly(self):
|
| 358 |
+
"""Tests that the subgraph cannot change the graph structure"""
|
| 359 |
+
pytest.raises(nx.NetworkXError, self.H.add_node, 5)
|
| 360 |
+
pytest.raises(nx.NetworkXError, self.H.remove_node, 0)
|
| 361 |
+
pytest.raises(nx.NetworkXError, self.H.add_edge, 5, 6)
|
| 362 |
+
pytest.raises(nx.NetworkXError, self.H.remove_edge, 0, 1)
|
minigpt2/lib/python3.10/site-packages/networkx/readwrite/__pycache__/__init__.cpython-310.pyc
ADDED
|
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|
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minigpt2/lib/python3.10/site-packages/networkx/readwrite/__pycache__/edgelist.cpython-310.pyc
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minigpt2/lib/python3.10/site-packages/networkx/readwrite/__pycache__/multiline_adjlist.cpython-310.pyc
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|
|
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minigpt2/lib/python3.10/site-packages/networkx/readwrite/json_graph/__pycache__/__init__.cpython-310.pyc
ADDED
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|
parrot/lib/python3.10/site-packages/torch/include/ATen/ops/_efficient_attention_backward_ops.h
ADDED
|
@@ -0,0 +1,28 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
#pragma once
|
| 2 |
+
|
| 3 |
+
// @generated by torchgen/gen.py from Operator.h
|
| 4 |
+
|
| 5 |
+
#include <tuple>
|
| 6 |
+
#include <vector>
|
| 7 |
+
|
| 8 |
+
// Forward declarations of any types needed in the operator signatures.
|
| 9 |
+
// We can't directly include these classes because it will cause circular include dependencies.
|
| 10 |
+
// This file is included by TensorBody.h, which defines the Tensor class.
|
| 11 |
+
#include <ATen/core/ATen_fwd.h>
|
| 12 |
+
|
| 13 |
+
namespace at {
|
| 14 |
+
namespace _ops {
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
struct TORCH_API _efficient_attention_backward {
|
| 18 |
+
using schema = ::std::tuple<at::Tensor,at::Tensor,at::Tensor,at::Tensor> (const at::Tensor &, const at::Tensor &, const at::Tensor &, const at::Tensor &, const ::std::optional<at::Tensor> &, const at::Tensor &, const ::std::optional<at::Tensor> &, const ::std::optional<at::Tensor> &, c10::SymInt, c10::SymInt, const at::Tensor &, double, const at::Tensor &, const at::Tensor &, int64_t, bool, ::std::optional<double>, ::std::optional<int64_t>, ::std::optional<int64_t>, bool);
|
| 19 |
+
using ptr_schema = schema*;
|
| 20 |
+
// See Note [static constexpr char* members for windows NVCC]
|
| 21 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(name, "aten::_efficient_attention_backward")
|
| 22 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(overload_name, "")
|
| 23 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(schema_str, "_efficient_attention_backward(Tensor grad_out_, Tensor query, Tensor key, Tensor value, Tensor? bias, Tensor out, Tensor? cu_seqlens_q, Tensor? cu_seqlens_k, SymInt max_seqlen_q, SymInt max_seqlen_k, Tensor logsumexp, float dropout_p, Tensor philox_seed, Tensor philox_offset, int custom_mask_type, bool bias_requires_grad, *, float? scale=None, int? num_splits_key=None, int? window_size=None, bool shared_storage_dqdkdv=False) -> (Tensor, Tensor, Tensor, Tensor)")
|
| 24 |
+
static ::std::tuple<at::Tensor,at::Tensor,at::Tensor,at::Tensor> call(const at::Tensor & grad_out_, const at::Tensor & query, const at::Tensor & key, const at::Tensor & value, const ::std::optional<at::Tensor> & bias, const at::Tensor & out, const ::std::optional<at::Tensor> & cu_seqlens_q, const ::std::optional<at::Tensor> & cu_seqlens_k, c10::SymInt max_seqlen_q, c10::SymInt max_seqlen_k, const at::Tensor & logsumexp, double dropout_p, const at::Tensor & philox_seed, const at::Tensor & philox_offset, int64_t custom_mask_type, bool bias_requires_grad, ::std::optional<double> scale, ::std::optional<int64_t> num_splits_key, ::std::optional<int64_t> window_size, bool shared_storage_dqdkdv);
|
| 25 |
+
static ::std::tuple<at::Tensor,at::Tensor,at::Tensor,at::Tensor> redispatch(c10::DispatchKeySet dispatchKeySet, const at::Tensor & grad_out_, const at::Tensor & query, const at::Tensor & key, const at::Tensor & value, const ::std::optional<at::Tensor> & bias, const at::Tensor & out, const ::std::optional<at::Tensor> & cu_seqlens_q, const ::std::optional<at::Tensor> & cu_seqlens_k, c10::SymInt max_seqlen_q, c10::SymInt max_seqlen_k, const at::Tensor & logsumexp, double dropout_p, const at::Tensor & philox_seed, const at::Tensor & philox_offset, int64_t custom_mask_type, bool bias_requires_grad, ::std::optional<double> scale, ::std::optional<int64_t> num_splits_key, ::std::optional<int64_t> window_size, bool shared_storage_dqdkdv);
|
| 26 |
+
};
|
| 27 |
+
|
| 28 |
+
}} // namespace at::_ops
|
parrot/lib/python3.10/site-packages/torch/include/ATen/ops/_foobar_compositeexplicitautograd_dispatch.h
ADDED
|
@@ -0,0 +1,24 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
#pragma once
|
| 2 |
+
// @generated by torchgen/gen.py from DispatchKeyFunction.h
|
| 3 |
+
|
| 4 |
+
// NB: The implementing C++ file is RegisterDispatchKey.cpp
|
| 5 |
+
|
| 6 |
+
// The only #includes we need are for custom classes that have defaults in the C++ API
|
| 7 |
+
#include <c10/core/MemoryFormat.h>
|
| 8 |
+
#include <c10/core/Scalar.h>
|
| 9 |
+
#include <ATen/core/Reduction.h>
|
| 10 |
+
|
| 11 |
+
// Forward declarations of any types needed in the operator signatures.
|
| 12 |
+
// We can't directly include these classes because it will cause circular include dependencies.
|
| 13 |
+
// This file is included by TensorBody.h, which defines the Tensor class.
|
| 14 |
+
#include <ATen/core/ATen_fwd.h>
|
| 15 |
+
|
| 16 |
+
namespace at {
|
| 17 |
+
|
| 18 |
+
namespace compositeexplicitautograd {
|
| 19 |
+
|
| 20 |
+
TORCH_API at::Tensor & _foobar_out(at::Tensor & out, const at::Tensor & self, bool arg1=true, bool arg2=true, bool arg3=true);
|
| 21 |
+
TORCH_API at::Tensor & _foobar_outf(const at::Tensor & self, bool arg1, bool arg2, bool arg3, at::Tensor & out);
|
| 22 |
+
|
| 23 |
+
} // namespace compositeexplicitautograd
|
| 24 |
+
} // namespace at
|
parrot/lib/python3.10/site-packages/torch/include/ATen/ops/_foreach_abs_ops.h
ADDED
|
@@ -0,0 +1,50 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
#pragma once
|
| 2 |
+
|
| 3 |
+
// @generated by torchgen/gen.py from Operator.h
|
| 4 |
+
|
| 5 |
+
#include <tuple>
|
| 6 |
+
#include <vector>
|
| 7 |
+
|
| 8 |
+
// Forward declarations of any types needed in the operator signatures.
|
| 9 |
+
// We can't directly include these classes because it will cause circular include dependencies.
|
| 10 |
+
// This file is included by TensorBody.h, which defines the Tensor class.
|
| 11 |
+
#include <ATen/core/ATen_fwd.h>
|
| 12 |
+
|
| 13 |
+
namespace at {
|
| 14 |
+
namespace _ops {
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
struct TORCH_API _foreach_abs {
|
| 18 |
+
using schema = ::std::vector<at::Tensor> (at::TensorList);
|
| 19 |
+
using ptr_schema = schema*;
|
| 20 |
+
// See Note [static constexpr char* members for windows NVCC]
|
| 21 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(name, "aten::_foreach_abs")
|
| 22 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(overload_name, "")
|
| 23 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(schema_str, "_foreach_abs(Tensor[] self) -> Tensor[]")
|
| 24 |
+
static ::std::vector<at::Tensor> call(at::TensorList self);
|
| 25 |
+
static ::std::vector<at::Tensor> redispatch(c10::DispatchKeySet dispatchKeySet, at::TensorList self);
|
| 26 |
+
};
|
| 27 |
+
|
| 28 |
+
struct TORCH_API _foreach_abs_ {
|
| 29 |
+
using schema = void (at::TensorList);
|
| 30 |
+
using ptr_schema = schema*;
|
| 31 |
+
// See Note [static constexpr char* members for windows NVCC]
|
| 32 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(name, "aten::_foreach_abs_")
|
| 33 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(overload_name, "")
|
| 34 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(schema_str, "_foreach_abs_(Tensor(a!)[] self) -> ()")
|
| 35 |
+
static void call(at::TensorList self);
|
| 36 |
+
static void redispatch(c10::DispatchKeySet dispatchKeySet, at::TensorList self);
|
| 37 |
+
};
|
| 38 |
+
|
| 39 |
+
struct TORCH_API _foreach_abs_out {
|
| 40 |
+
using schema = void (at::TensorList, at::TensorList);
|
| 41 |
+
using ptr_schema = schema*;
|
| 42 |
+
// See Note [static constexpr char* members for windows NVCC]
|
| 43 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(name, "aten::_foreach_abs")
|
| 44 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(overload_name, "out")
|
| 45 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(schema_str, "_foreach_abs.out(Tensor[] self, *, Tensor(a!)[] out) -> ()")
|
| 46 |
+
static void call(at::TensorList self, at::TensorList out);
|
| 47 |
+
static void redispatch(c10::DispatchKeySet dispatchKeySet, at::TensorList self, at::TensorList out);
|
| 48 |
+
};
|
| 49 |
+
|
| 50 |
+
}} // namespace at::_ops
|
parrot/lib/python3.10/site-packages/torch/include/ATen/ops/_foreach_erf_cuda_dispatch.h
ADDED
|
@@ -0,0 +1,24 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
#pragma once
|
| 2 |
+
// @generated by torchgen/gen.py from DispatchKeyFunction.h
|
| 3 |
+
|
| 4 |
+
// NB: The implementing C++ file is RegisterDispatchKey.cpp
|
| 5 |
+
|
| 6 |
+
// The only #includes we need are for custom classes that have defaults in the C++ API
|
| 7 |
+
#include <c10/core/MemoryFormat.h>
|
| 8 |
+
#include <c10/core/Scalar.h>
|
| 9 |
+
#include <ATen/core/Reduction.h>
|
| 10 |
+
|
| 11 |
+
// Forward declarations of any types needed in the operator signatures.
|
| 12 |
+
// We can't directly include these classes because it will cause circular include dependencies.
|
| 13 |
+
// This file is included by TensorBody.h, which defines the Tensor class.
|
| 14 |
+
#include <ATen/core/ATen_fwd.h>
|
| 15 |
+
|
| 16 |
+
namespace at {
|
| 17 |
+
|
| 18 |
+
namespace cuda {
|
| 19 |
+
|
| 20 |
+
TORCH_API ::std::vector<at::Tensor> _foreach_erf(at::TensorList self);
|
| 21 |
+
TORCH_API void _foreach_erf_(at::TensorList self);
|
| 22 |
+
|
| 23 |
+
} // namespace cuda
|
| 24 |
+
} // namespace at
|
parrot/lib/python3.10/site-packages/torch/include/ATen/ops/_fw_primal_copy_ops.h
ADDED
|
@@ -0,0 +1,39 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
#pragma once
|
| 2 |
+
|
| 3 |
+
// @generated by torchgen/gen.py from Operator.h
|
| 4 |
+
|
| 5 |
+
#include <tuple>
|
| 6 |
+
#include <vector>
|
| 7 |
+
|
| 8 |
+
// Forward declarations of any types needed in the operator signatures.
|
| 9 |
+
// We can't directly include these classes because it will cause circular include dependencies.
|
| 10 |
+
// This file is included by TensorBody.h, which defines the Tensor class.
|
| 11 |
+
#include <ATen/core/ATen_fwd.h>
|
| 12 |
+
|
| 13 |
+
namespace at {
|
| 14 |
+
namespace _ops {
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
struct TORCH_API _fw_primal_copy {
|
| 18 |
+
using schema = at::Tensor (const at::Tensor &, int64_t);
|
| 19 |
+
using ptr_schema = schema*;
|
| 20 |
+
// See Note [static constexpr char* members for windows NVCC]
|
| 21 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(name, "aten::_fw_primal_copy")
|
| 22 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(overload_name, "")
|
| 23 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(schema_str, "_fw_primal_copy(Tensor self, int level) -> Tensor")
|
| 24 |
+
static at::Tensor call(const at::Tensor & self, int64_t level);
|
| 25 |
+
static at::Tensor redispatch(c10::DispatchKeySet dispatchKeySet, const at::Tensor & self, int64_t level);
|
| 26 |
+
};
|
| 27 |
+
|
| 28 |
+
struct TORCH_API _fw_primal_copy_out {
|
| 29 |
+
using schema = at::Tensor & (const at::Tensor &, int64_t, at::Tensor &);
|
| 30 |
+
using ptr_schema = schema*;
|
| 31 |
+
// See Note [static constexpr char* members for windows NVCC]
|
| 32 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(name, "aten::_fw_primal_copy")
|
| 33 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(overload_name, "out")
|
| 34 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(schema_str, "_fw_primal_copy.out(Tensor self, int level, *, Tensor(a!) out) -> Tensor(a!)")
|
| 35 |
+
static at::Tensor & call(const at::Tensor & self, int64_t level, at::Tensor & out);
|
| 36 |
+
static at::Tensor & redispatch(c10::DispatchKeySet dispatchKeySet, const at::Tensor & self, int64_t level, at::Tensor & out);
|
| 37 |
+
};
|
| 38 |
+
|
| 39 |
+
}} // namespace at::_ops
|
parrot/lib/python3.10/site-packages/torch/include/ATen/ops/_pad_circular_ops.h
ADDED
|
@@ -0,0 +1,28 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
#pragma once
|
| 2 |
+
|
| 3 |
+
// @generated by torchgen/gen.py from Operator.h
|
| 4 |
+
|
| 5 |
+
#include <tuple>
|
| 6 |
+
#include <vector>
|
| 7 |
+
|
| 8 |
+
// Forward declarations of any types needed in the operator signatures.
|
| 9 |
+
// We can't directly include these classes because it will cause circular include dependencies.
|
| 10 |
+
// This file is included by TensorBody.h, which defines the Tensor class.
|
| 11 |
+
#include <ATen/core/ATen_fwd.h>
|
| 12 |
+
|
| 13 |
+
namespace at {
|
| 14 |
+
namespace _ops {
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
struct TORCH_API _pad_circular {
|
| 18 |
+
using schema = at::Tensor (const at::Tensor &, c10::SymIntArrayRef);
|
| 19 |
+
using ptr_schema = schema*;
|
| 20 |
+
// See Note [static constexpr char* members for windows NVCC]
|
| 21 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(name, "aten::_pad_circular")
|
| 22 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(overload_name, "")
|
| 23 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(schema_str, "_pad_circular(Tensor self, SymInt[] pad) -> Tensor")
|
| 24 |
+
static at::Tensor call(const at::Tensor & self, c10::SymIntArrayRef pad);
|
| 25 |
+
static at::Tensor redispatch(c10::DispatchKeySet dispatchKeySet, const at::Tensor & self, c10::SymIntArrayRef pad);
|
| 26 |
+
};
|
| 27 |
+
|
| 28 |
+
}} // namespace at::_ops
|
parrot/lib/python3.10/site-packages/torch/include/ATen/ops/_slow_conv2d_backward.h
ADDED
|
@@ -0,0 +1,135 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
#pragma once
|
| 2 |
+
|
| 3 |
+
// @generated by torchgen/gen.py from Function.h
|
| 4 |
+
|
| 5 |
+
#include <ATen/Context.h>
|
| 6 |
+
#include <ATen/DeviceGuard.h>
|
| 7 |
+
#include <ATen/TensorUtils.h>
|
| 8 |
+
#include <ATen/TracerMode.h>
|
| 9 |
+
#include <ATen/core/Generator.h>
|
| 10 |
+
#include <ATen/core/Reduction.h>
|
| 11 |
+
#include <ATen/core/Tensor.h>
|
| 12 |
+
#include <c10/core/Scalar.h>
|
| 13 |
+
#include <c10/core/Storage.h>
|
| 14 |
+
#include <c10/core/TensorOptions.h>
|
| 15 |
+
#include <c10/util/Deprecated.h>
|
| 16 |
+
#include <c10/util/Optional.h>
|
| 17 |
+
|
| 18 |
+
|
| 19 |
+
|
| 20 |
+
#include <ATen/ops/_slow_conv2d_backward_ops.h>
|
| 21 |
+
|
| 22 |
+
namespace at {
|
| 23 |
+
|
| 24 |
+
|
| 25 |
+
// aten::_slow_conv2d_backward.grad_input(Tensor grad_output, Tensor self, Tensor weight, SymInt[2] kernel_size, SymInt[2] stride, SymInt[2] padding, *, Tensor(a!) grad_input, Tensor(b!) grad_weight, Tensor(c!) grad_bias) -> (Tensor(a!), Tensor(b!), Tensor(c!))
|
| 26 |
+
inline ::std::tuple<at::Tensor &,at::Tensor &,at::Tensor &> _slow_conv2d_backward_out(at::Tensor & grad_input, at::Tensor & grad_weight, at::Tensor & grad_bias, const at::Tensor & grad_output, const at::Tensor & self, const at::Tensor & weight, at::IntArrayRef kernel_size, at::IntArrayRef stride, at::IntArrayRef padding) {
|
| 27 |
+
return at::_ops::_slow_conv2d_backward_grad_input::call(grad_output, self, weight, c10::fromIntArrayRefSlow(kernel_size), c10::fromIntArrayRefSlow(stride), c10::fromIntArrayRefSlow(padding), grad_input, grad_weight, grad_bias);
|
| 28 |
+
}
|
| 29 |
+
namespace symint {
|
| 30 |
+
template <typename T, typename = std::enable_if_t<std::is_same<T, int64_t>::value>>
|
| 31 |
+
::std::tuple<at::Tensor &,at::Tensor &,at::Tensor &> _slow_conv2d_backward_out(at::Tensor & grad_input, at::Tensor & grad_weight, at::Tensor & grad_bias, const at::Tensor & grad_output, const at::Tensor & self, const at::Tensor & weight, at::IntArrayRef kernel_size, at::IntArrayRef stride, at::IntArrayRef padding) {
|
| 32 |
+
return at::_ops::_slow_conv2d_backward_grad_input::call(grad_output, self, weight, c10::fromIntArrayRefSlow(kernel_size), c10::fromIntArrayRefSlow(stride), c10::fromIntArrayRefSlow(padding), grad_input, grad_weight, grad_bias);
|
| 33 |
+
}
|
| 34 |
+
}
|
| 35 |
+
|
| 36 |
+
// aten::_slow_conv2d_backward.grad_input(Tensor grad_output, Tensor self, Tensor weight, SymInt[2] kernel_size, SymInt[2] stride, SymInt[2] padding, *, Tensor(a!) grad_input, Tensor(b!) grad_weight, Tensor(c!) grad_bias) -> (Tensor(a!), Tensor(b!), Tensor(c!))
|
| 37 |
+
inline ::std::tuple<at::Tensor &,at::Tensor &,at::Tensor &> _slow_conv2d_backward_outf(const at::Tensor & grad_output, const at::Tensor & self, const at::Tensor & weight, at::IntArrayRef kernel_size, at::IntArrayRef stride, at::IntArrayRef padding, at::Tensor & grad_input, at::Tensor & grad_weight, at::Tensor & grad_bias) {
|
| 38 |
+
return at::_ops::_slow_conv2d_backward_grad_input::call(grad_output, self, weight, c10::fromIntArrayRefSlow(kernel_size), c10::fromIntArrayRefSlow(stride), c10::fromIntArrayRefSlow(padding), grad_input, grad_weight, grad_bias);
|
| 39 |
+
}
|
| 40 |
+
namespace symint {
|
| 41 |
+
template <typename T, typename = std::enable_if_t<std::is_same<T, int64_t>::value>>
|
| 42 |
+
::std::tuple<at::Tensor &,at::Tensor &,at::Tensor &> _slow_conv2d_backward_outf(const at::Tensor & grad_output, const at::Tensor & self, const at::Tensor & weight, at::IntArrayRef kernel_size, at::IntArrayRef stride, at::IntArrayRef padding, at::Tensor & grad_input, at::Tensor & grad_weight, at::Tensor & grad_bias) {
|
| 43 |
+
return at::_ops::_slow_conv2d_backward_grad_input::call(grad_output, self, weight, c10::fromIntArrayRefSlow(kernel_size), c10::fromIntArrayRefSlow(stride), c10::fromIntArrayRefSlow(padding), grad_input, grad_weight, grad_bias);
|
| 44 |
+
}
|
| 45 |
+
}
|
| 46 |
+
|
| 47 |
+
// aten::_slow_conv2d_backward.grad_input(Tensor grad_output, Tensor self, Tensor weight, SymInt[2] kernel_size, SymInt[2] stride, SymInt[2] padding, *, Tensor(a!) grad_input, Tensor(b!) grad_weight, Tensor(c!) grad_bias) -> (Tensor(a!), Tensor(b!), Tensor(c!))
|
| 48 |
+
inline ::std::tuple<at::Tensor &,at::Tensor &,at::Tensor &> _slow_conv2d_backward_symint_out(at::Tensor & grad_input, at::Tensor & grad_weight, at::Tensor & grad_bias, const at::Tensor & grad_output, const at::Tensor & self, const at::Tensor & weight, c10::SymIntArrayRef kernel_size, c10::SymIntArrayRef stride, c10::SymIntArrayRef padding) {
|
| 49 |
+
return at::_ops::_slow_conv2d_backward_grad_input::call(grad_output, self, weight, kernel_size, stride, padding, grad_input, grad_weight, grad_bias);
|
| 50 |
+
}
|
| 51 |
+
namespace symint {
|
| 52 |
+
template <typename T, typename = std::enable_if_t<std::is_same<T, c10::SymInt>::value>>
|
| 53 |
+
::std::tuple<at::Tensor &,at::Tensor &,at::Tensor &> _slow_conv2d_backward_out(at::Tensor & grad_input, at::Tensor & grad_weight, at::Tensor & grad_bias, const at::Tensor & grad_output, const at::Tensor & self, const at::Tensor & weight, c10::SymIntArrayRef kernel_size, c10::SymIntArrayRef stride, c10::SymIntArrayRef padding) {
|
| 54 |
+
return at::_ops::_slow_conv2d_backward_grad_input::call(grad_output, self, weight, kernel_size, stride, padding, grad_input, grad_weight, grad_bias);
|
| 55 |
+
}
|
| 56 |
+
}
|
| 57 |
+
|
| 58 |
+
// aten::_slow_conv2d_backward.grad_input(Tensor grad_output, Tensor self, Tensor weight, SymInt[2] kernel_size, SymInt[2] stride, SymInt[2] padding, *, Tensor(a!) grad_input, Tensor(b!) grad_weight, Tensor(c!) grad_bias) -> (Tensor(a!), Tensor(b!), Tensor(c!))
|
| 59 |
+
inline ::std::tuple<at::Tensor &,at::Tensor &,at::Tensor &> _slow_conv2d_backward_symint_outf(const at::Tensor & grad_output, const at::Tensor & self, const at::Tensor & weight, c10::SymIntArrayRef kernel_size, c10::SymIntArrayRef stride, c10::SymIntArrayRef padding, at::Tensor & grad_input, at::Tensor & grad_weight, at::Tensor & grad_bias) {
|
| 60 |
+
return at::_ops::_slow_conv2d_backward_grad_input::call(grad_output, self, weight, kernel_size, stride, padding, grad_input, grad_weight, grad_bias);
|
| 61 |
+
}
|
| 62 |
+
namespace symint {
|
| 63 |
+
template <typename T, typename = std::enable_if_t<std::is_same<T, c10::SymInt>::value>>
|
| 64 |
+
::std::tuple<at::Tensor &,at::Tensor &,at::Tensor &> _slow_conv2d_backward_outf(const at::Tensor & grad_output, const at::Tensor & self, const at::Tensor & weight, c10::SymIntArrayRef kernel_size, c10::SymIntArrayRef stride, c10::SymIntArrayRef padding, at::Tensor & grad_input, at::Tensor & grad_weight, at::Tensor & grad_bias) {
|
| 65 |
+
return at::_ops::_slow_conv2d_backward_grad_input::call(grad_output, self, weight, kernel_size, stride, padding, grad_input, grad_weight, grad_bias);
|
| 66 |
+
}
|
| 67 |
+
}
|
| 68 |
+
|
| 69 |
+
// aten::_slow_conv2d_backward.output_mask(Tensor grad_output, Tensor self, Tensor weight, SymInt[2] kernel_size, SymInt[2] stride, SymInt[2] padding, bool[3] output_mask) -> (Tensor grad_input, Tensor grad_weight, Tensor grad_bias)
|
| 70 |
+
inline ::std::tuple<at::Tensor,at::Tensor,at::Tensor> _slow_conv2d_backward(const at::Tensor & grad_output, const at::Tensor & self, const at::Tensor & weight, at::IntArrayRef kernel_size, at::IntArrayRef stride, at::IntArrayRef padding, ::std::array<bool,3> output_mask) {
|
| 71 |
+
return at::_ops::_slow_conv2d_backward_output_mask::call(grad_output, self, weight, c10::fromIntArrayRefSlow(kernel_size), c10::fromIntArrayRefSlow(stride), c10::fromIntArrayRefSlow(padding), output_mask);
|
| 72 |
+
}
|
| 73 |
+
namespace symint {
|
| 74 |
+
template <typename T, typename = std::enable_if_t<std::is_same<T, int64_t>::value>>
|
| 75 |
+
::std::tuple<at::Tensor,at::Tensor,at::Tensor> _slow_conv2d_backward(const at::Tensor & grad_output, const at::Tensor & self, const at::Tensor & weight, at::IntArrayRef kernel_size, at::IntArrayRef stride, at::IntArrayRef padding, ::std::array<bool,3> output_mask) {
|
| 76 |
+
return at::_ops::_slow_conv2d_backward_output_mask::call(grad_output, self, weight, c10::fromIntArrayRefSlow(kernel_size), c10::fromIntArrayRefSlow(stride), c10::fromIntArrayRefSlow(padding), output_mask);
|
| 77 |
+
}
|
| 78 |
+
}
|
| 79 |
+
|
| 80 |
+
// aten::_slow_conv2d_backward.output_mask(Tensor grad_output, Tensor self, Tensor weight, SymInt[2] kernel_size, SymInt[2] stride, SymInt[2] padding, bool[3] output_mask) -> (Tensor grad_input, Tensor grad_weight, Tensor grad_bias)
|
| 81 |
+
inline ::std::tuple<at::Tensor,at::Tensor,at::Tensor> _slow_conv2d_backward_symint(const at::Tensor & grad_output, const at::Tensor & self, const at::Tensor & weight, c10::SymIntArrayRef kernel_size, c10::SymIntArrayRef stride, c10::SymIntArrayRef padding, ::std::array<bool,3> output_mask) {
|
| 82 |
+
return at::_ops::_slow_conv2d_backward_output_mask::call(grad_output, self, weight, kernel_size, stride, padding, output_mask);
|
| 83 |
+
}
|
| 84 |
+
namespace symint {
|
| 85 |
+
template <typename T, typename = std::enable_if_t<std::is_same<T, c10::SymInt>::value>>
|
| 86 |
+
::std::tuple<at::Tensor,at::Tensor,at::Tensor> _slow_conv2d_backward(const at::Tensor & grad_output, const at::Tensor & self, const at::Tensor & weight, c10::SymIntArrayRef kernel_size, c10::SymIntArrayRef stride, c10::SymIntArrayRef padding, ::std::array<bool,3> output_mask) {
|
| 87 |
+
return at::_ops::_slow_conv2d_backward_output_mask::call(grad_output, self, weight, kernel_size, stride, padding, output_mask);
|
| 88 |
+
}
|
| 89 |
+
}
|
| 90 |
+
|
| 91 |
+
// aten::_slow_conv2d_backward.output_mask_out(Tensor grad_output, Tensor self, Tensor weight, SymInt[2] kernel_size, SymInt[2] stride, SymInt[2] padding, bool[3] output_mask, *, Tensor(a!) out0, Tensor(b!) out1, Tensor(c!) out2) -> (Tensor(a!), Tensor(b!), Tensor(c!))
|
| 92 |
+
inline ::std::tuple<at::Tensor &,at::Tensor &,at::Tensor &> _slow_conv2d_backward_out(at::Tensor & out0, at::Tensor & out1, at::Tensor & out2, const at::Tensor & grad_output, const at::Tensor & self, const at::Tensor & weight, at::IntArrayRef kernel_size, at::IntArrayRef stride, at::IntArrayRef padding, ::std::array<bool,3> output_mask) {
|
| 93 |
+
return at::_ops::_slow_conv2d_backward_output_mask_out::call(grad_output, self, weight, c10::fromIntArrayRefSlow(kernel_size), c10::fromIntArrayRefSlow(stride), c10::fromIntArrayRefSlow(padding), output_mask, out0, out1, out2);
|
| 94 |
+
}
|
| 95 |
+
namespace symint {
|
| 96 |
+
template <typename T, typename = std::enable_if_t<std::is_same<T, int64_t>::value>>
|
| 97 |
+
::std::tuple<at::Tensor &,at::Tensor &,at::Tensor &> _slow_conv2d_backward_out(at::Tensor & out0, at::Tensor & out1, at::Tensor & out2, const at::Tensor & grad_output, const at::Tensor & self, const at::Tensor & weight, at::IntArrayRef kernel_size, at::IntArrayRef stride, at::IntArrayRef padding, ::std::array<bool,3> output_mask) {
|
| 98 |
+
return at::_ops::_slow_conv2d_backward_output_mask_out::call(grad_output, self, weight, c10::fromIntArrayRefSlow(kernel_size), c10::fromIntArrayRefSlow(stride), c10::fromIntArrayRefSlow(padding), output_mask, out0, out1, out2);
|
| 99 |
+
}
|
| 100 |
+
}
|
| 101 |
+
|
| 102 |
+
// aten::_slow_conv2d_backward.output_mask_out(Tensor grad_output, Tensor self, Tensor weight, SymInt[2] kernel_size, SymInt[2] stride, SymInt[2] padding, bool[3] output_mask, *, Tensor(a!) out0, Tensor(b!) out1, Tensor(c!) out2) -> (Tensor(a!), Tensor(b!), Tensor(c!))
|
| 103 |
+
inline ::std::tuple<at::Tensor &,at::Tensor &,at::Tensor &> _slow_conv2d_backward_outf(const at::Tensor & grad_output, const at::Tensor & self, const at::Tensor & weight, at::IntArrayRef kernel_size, at::IntArrayRef stride, at::IntArrayRef padding, ::std::array<bool,3> output_mask, at::Tensor & out0, at::Tensor & out1, at::Tensor & out2) {
|
| 104 |
+
return at::_ops::_slow_conv2d_backward_output_mask_out::call(grad_output, self, weight, c10::fromIntArrayRefSlow(kernel_size), c10::fromIntArrayRefSlow(stride), c10::fromIntArrayRefSlow(padding), output_mask, out0, out1, out2);
|
| 105 |
+
}
|
| 106 |
+
namespace symint {
|
| 107 |
+
template <typename T, typename = std::enable_if_t<std::is_same<T, int64_t>::value>>
|
| 108 |
+
::std::tuple<at::Tensor &,at::Tensor &,at::Tensor &> _slow_conv2d_backward_outf(const at::Tensor & grad_output, const at::Tensor & self, const at::Tensor & weight, at::IntArrayRef kernel_size, at::IntArrayRef stride, at::IntArrayRef padding, ::std::array<bool,3> output_mask, at::Tensor & out0, at::Tensor & out1, at::Tensor & out2) {
|
| 109 |
+
return at::_ops::_slow_conv2d_backward_output_mask_out::call(grad_output, self, weight, c10::fromIntArrayRefSlow(kernel_size), c10::fromIntArrayRefSlow(stride), c10::fromIntArrayRefSlow(padding), output_mask, out0, out1, out2);
|
| 110 |
+
}
|
| 111 |
+
}
|
| 112 |
+
|
| 113 |
+
// aten::_slow_conv2d_backward.output_mask_out(Tensor grad_output, Tensor self, Tensor weight, SymInt[2] kernel_size, SymInt[2] stride, SymInt[2] padding, bool[3] output_mask, *, Tensor(a!) out0, Tensor(b!) out1, Tensor(c!) out2) -> (Tensor(a!), Tensor(b!), Tensor(c!))
|
| 114 |
+
inline ::std::tuple<at::Tensor &,at::Tensor &,at::Tensor &> _slow_conv2d_backward_symint_out(at::Tensor & out0, at::Tensor & out1, at::Tensor & out2, const at::Tensor & grad_output, const at::Tensor & self, const at::Tensor & weight, c10::SymIntArrayRef kernel_size, c10::SymIntArrayRef stride, c10::SymIntArrayRef padding, ::std::array<bool,3> output_mask) {
|
| 115 |
+
return at::_ops::_slow_conv2d_backward_output_mask_out::call(grad_output, self, weight, kernel_size, stride, padding, output_mask, out0, out1, out2);
|
| 116 |
+
}
|
| 117 |
+
namespace symint {
|
| 118 |
+
template <typename T, typename = std::enable_if_t<std::is_same<T, c10::SymInt>::value>>
|
| 119 |
+
::std::tuple<at::Tensor &,at::Tensor &,at::Tensor &> _slow_conv2d_backward_out(at::Tensor & out0, at::Tensor & out1, at::Tensor & out2, const at::Tensor & grad_output, const at::Tensor & self, const at::Tensor & weight, c10::SymIntArrayRef kernel_size, c10::SymIntArrayRef stride, c10::SymIntArrayRef padding, ::std::array<bool,3> output_mask) {
|
| 120 |
+
return at::_ops::_slow_conv2d_backward_output_mask_out::call(grad_output, self, weight, kernel_size, stride, padding, output_mask, out0, out1, out2);
|
| 121 |
+
}
|
| 122 |
+
}
|
| 123 |
+
|
| 124 |
+
// aten::_slow_conv2d_backward.output_mask_out(Tensor grad_output, Tensor self, Tensor weight, SymInt[2] kernel_size, SymInt[2] stride, SymInt[2] padding, bool[3] output_mask, *, Tensor(a!) out0, Tensor(b!) out1, Tensor(c!) out2) -> (Tensor(a!), Tensor(b!), Tensor(c!))
|
| 125 |
+
inline ::std::tuple<at::Tensor &,at::Tensor &,at::Tensor &> _slow_conv2d_backward_symint_outf(const at::Tensor & grad_output, const at::Tensor & self, const at::Tensor & weight, c10::SymIntArrayRef kernel_size, c10::SymIntArrayRef stride, c10::SymIntArrayRef padding, ::std::array<bool,3> output_mask, at::Tensor & out0, at::Tensor & out1, at::Tensor & out2) {
|
| 126 |
+
return at::_ops::_slow_conv2d_backward_output_mask_out::call(grad_output, self, weight, kernel_size, stride, padding, output_mask, out0, out1, out2);
|
| 127 |
+
}
|
| 128 |
+
namespace symint {
|
| 129 |
+
template <typename T, typename = std::enable_if_t<std::is_same<T, c10::SymInt>::value>>
|
| 130 |
+
::std::tuple<at::Tensor &,at::Tensor &,at::Tensor &> _slow_conv2d_backward_outf(const at::Tensor & grad_output, const at::Tensor & self, const at::Tensor & weight, c10::SymIntArrayRef kernel_size, c10::SymIntArrayRef stride, c10::SymIntArrayRef padding, ::std::array<bool,3> output_mask, at::Tensor & out0, at::Tensor & out1, at::Tensor & out2) {
|
| 131 |
+
return at::_ops::_slow_conv2d_backward_output_mask_out::call(grad_output, self, weight, kernel_size, stride, padding, output_mask, out0, out1, out2);
|
| 132 |
+
}
|
| 133 |
+
}
|
| 134 |
+
|
| 135 |
+
}
|
parrot/lib/python3.10/site-packages/torch/include/ATen/ops/_weight_norm_interface_backward_cuda_dispatch.h
ADDED
|
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
#pragma once
|
| 2 |
+
// @generated by torchgen/gen.py from DispatchKeyFunction.h
|
| 3 |
+
|
| 4 |
+
// NB: The implementing C++ file is RegisterDispatchKey.cpp
|
| 5 |
+
|
| 6 |
+
// The only #includes we need are for custom classes that have defaults in the C++ API
|
| 7 |
+
#include <c10/core/MemoryFormat.h>
|
| 8 |
+
#include <c10/core/Scalar.h>
|
| 9 |
+
#include <ATen/core/Reduction.h>
|
| 10 |
+
|
| 11 |
+
// Forward declarations of any types needed in the operator signatures.
|
| 12 |
+
// We can't directly include these classes because it will cause circular include dependencies.
|
| 13 |
+
// This file is included by TensorBody.h, which defines the Tensor class.
|
| 14 |
+
#include <ATen/core/ATen_fwd.h>
|
| 15 |
+
|
| 16 |
+
namespace at {
|
| 17 |
+
|
| 18 |
+
namespace cuda {
|
| 19 |
+
|
| 20 |
+
TORCH_API ::std::tuple<at::Tensor,at::Tensor> _weight_norm_interface_backward(const at::Tensor & grad_w, const at::Tensor & saved_v, const at::Tensor & saved_g, const at::Tensor & saved_norms, int64_t dim);
|
| 21 |
+
|
| 22 |
+
} // namespace cuda
|
| 23 |
+
} // namespace at
|
parrot/lib/python3.10/site-packages/torch/include/ATen/ops/bincount_ops.h
ADDED
|
@@ -0,0 +1,39 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
#pragma once
|
| 2 |
+
|
| 3 |
+
// @generated by torchgen/gen.py from Operator.h
|
| 4 |
+
|
| 5 |
+
#include <tuple>
|
| 6 |
+
#include <vector>
|
| 7 |
+
|
| 8 |
+
// Forward declarations of any types needed in the operator signatures.
|
| 9 |
+
// We can't directly include these classes because it will cause circular include dependencies.
|
| 10 |
+
// This file is included by TensorBody.h, which defines the Tensor class.
|
| 11 |
+
#include <ATen/core/ATen_fwd.h>
|
| 12 |
+
|
| 13 |
+
namespace at {
|
| 14 |
+
namespace _ops {
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
struct TORCH_API bincount {
|
| 18 |
+
using schema = at::Tensor (const at::Tensor &, const ::std::optional<at::Tensor> &, int64_t);
|
| 19 |
+
using ptr_schema = schema*;
|
| 20 |
+
// See Note [static constexpr char* members for windows NVCC]
|
| 21 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(name, "aten::bincount")
|
| 22 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(overload_name, "")
|
| 23 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(schema_str, "bincount(Tensor self, Tensor? weights=None, int minlength=0) -> Tensor")
|
| 24 |
+
static at::Tensor call(const at::Tensor & self, const ::std::optional<at::Tensor> & weights, int64_t minlength);
|
| 25 |
+
static at::Tensor redispatch(c10::DispatchKeySet dispatchKeySet, const at::Tensor & self, const ::std::optional<at::Tensor> & weights, int64_t minlength);
|
| 26 |
+
};
|
| 27 |
+
|
| 28 |
+
struct TORCH_API bincount_out {
|
| 29 |
+
using schema = at::Tensor & (const at::Tensor &, const ::std::optional<at::Tensor> &, int64_t, at::Tensor &);
|
| 30 |
+
using ptr_schema = schema*;
|
| 31 |
+
// See Note [static constexpr char* members for windows NVCC]
|
| 32 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(name, "aten::bincount")
|
| 33 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(overload_name, "out")
|
| 34 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(schema_str, "bincount.out(Tensor self, Tensor? weights=None, int minlength=0, *, Tensor(a!) out) -> Tensor(a!)")
|
| 35 |
+
static at::Tensor & call(const at::Tensor & self, const ::std::optional<at::Tensor> & weights, int64_t minlength, at::Tensor & out);
|
| 36 |
+
static at::Tensor & redispatch(c10::DispatchKeySet dispatchKeySet, const at::Tensor & self, const ::std::optional<at::Tensor> & weights, int64_t minlength, at::Tensor & out);
|
| 37 |
+
};
|
| 38 |
+
|
| 39 |
+
}} // namespace at::_ops
|
parrot/lib/python3.10/site-packages/torch/include/ATen/ops/convolution_backward_overrideable_native.h
ADDED
|
@@ -0,0 +1,22 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
#pragma once
|
| 2 |
+
|
| 3 |
+
// @generated by torchgen/gen.py from NativeFunction.h
|
| 4 |
+
|
| 5 |
+
#include <c10/core/Scalar.h>
|
| 6 |
+
#include <c10/core/Storage.h>
|
| 7 |
+
#include <c10/core/TensorOptions.h>
|
| 8 |
+
#include <c10/util/Deprecated.h>
|
| 9 |
+
#include <c10/util/Optional.h>
|
| 10 |
+
#include <c10/core/QScheme.h>
|
| 11 |
+
#include <ATen/core/Reduction.h>
|
| 12 |
+
#include <ATen/core/Tensor.h>
|
| 13 |
+
#include <tuple>
|
| 14 |
+
#include <vector>
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
namespace at {
|
| 18 |
+
namespace native {
|
| 19 |
+
TORCH_API ::std::tuple<at::Tensor,at::Tensor,at::Tensor> convolution_backward_overrideable(const at::Tensor & grad_output, const at::Tensor & input, const at::Tensor & weight, at::IntArrayRef stride, at::IntArrayRef padding, at::IntArrayRef dilation, bool transposed, at::IntArrayRef output_padding, int64_t groups, ::std::array<bool,3> output_mask);
|
| 20 |
+
TORCH_API ::std::tuple<at::Tensor &,at::Tensor &,at::Tensor &> convolution_backward_overrideable_out_symint(const at::Tensor & grad_output, const at::Tensor & input, const at::Tensor & weight, c10::SymIntArrayRef stride, c10::SymIntArrayRef padding, c10::SymIntArrayRef dilation, bool transposed, c10::SymIntArrayRef output_padding, c10::SymInt groups, ::std::array<bool,3> output_mask, at::Tensor & out0, at::Tensor & out1, at::Tensor & out2);
|
| 21 |
+
} // namespace native
|
| 22 |
+
} // namespace at
|
parrot/lib/python3.10/site-packages/torch/include/ATen/ops/detach_copy_compositeexplicitautogradnonfunctional_dispatch.h
ADDED
|
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
#pragma once
|
| 2 |
+
// @generated by torchgen/gen.py from DispatchKeyFunction.h
|
| 3 |
+
|
| 4 |
+
// NB: The implementing C++ file is RegisterDispatchKey.cpp
|
| 5 |
+
|
| 6 |
+
// The only #includes we need are for custom classes that have defaults in the C++ API
|
| 7 |
+
#include <c10/core/MemoryFormat.h>
|
| 8 |
+
#include <c10/core/Scalar.h>
|
| 9 |
+
#include <ATen/core/Reduction.h>
|
| 10 |
+
|
| 11 |
+
// Forward declarations of any types needed in the operator signatures.
|
| 12 |
+
// We can't directly include these classes because it will cause circular include dependencies.
|
| 13 |
+
// This file is included by TensorBody.h, which defines the Tensor class.
|
| 14 |
+
#include <ATen/core/ATen_fwd.h>
|
| 15 |
+
|
| 16 |
+
namespace at {
|
| 17 |
+
|
| 18 |
+
namespace compositeexplicitautogradnonfunctional {
|
| 19 |
+
|
| 20 |
+
TORCH_API at::Tensor detach_copy(const at::Tensor & self);
|
| 21 |
+
|
| 22 |
+
} // namespace compositeexplicitautogradnonfunctional
|
| 23 |
+
} // namespace at
|
parrot/lib/python3.10/site-packages/torch/include/ATen/ops/embedding_bag_ops.h
ADDED
|
@@ -0,0 +1,39 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
#pragma once
|
| 2 |
+
|
| 3 |
+
// @generated by torchgen/gen.py from Operator.h
|
| 4 |
+
|
| 5 |
+
#include <tuple>
|
| 6 |
+
#include <vector>
|
| 7 |
+
|
| 8 |
+
// Forward declarations of any types needed in the operator signatures.
|
| 9 |
+
// We can't directly include these classes because it will cause circular include dependencies.
|
| 10 |
+
// This file is included by TensorBody.h, which defines the Tensor class.
|
| 11 |
+
#include <ATen/core/ATen_fwd.h>
|
| 12 |
+
|
| 13 |
+
namespace at {
|
| 14 |
+
namespace _ops {
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
struct TORCH_API embedding_bag {
|
| 18 |
+
using schema = ::std::tuple<at::Tensor,at::Tensor,at::Tensor,at::Tensor> (const at::Tensor &, const at::Tensor &, const at::Tensor &, bool, int64_t, bool, const ::std::optional<at::Tensor> &, bool);
|
| 19 |
+
using ptr_schema = schema*;
|
| 20 |
+
// See Note [static constexpr char* members for windows NVCC]
|
| 21 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(name, "aten::embedding_bag")
|
| 22 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(overload_name, "")
|
| 23 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(schema_str, "embedding_bag(Tensor weight, Tensor indices, Tensor offsets, bool scale_grad_by_freq=False, int mode=0, bool sparse=False, Tensor? per_sample_weights=None, bool include_last_offset=False) -> (Tensor, Tensor, Tensor, Tensor)")
|
| 24 |
+
static ::std::tuple<at::Tensor,at::Tensor,at::Tensor,at::Tensor> call(const at::Tensor & weight, const at::Tensor & indices, const at::Tensor & offsets, bool scale_grad_by_freq, int64_t mode, bool sparse, const ::std::optional<at::Tensor> & per_sample_weights, bool include_last_offset);
|
| 25 |
+
static ::std::tuple<at::Tensor,at::Tensor,at::Tensor,at::Tensor> redispatch(c10::DispatchKeySet dispatchKeySet, const at::Tensor & weight, const at::Tensor & indices, const at::Tensor & offsets, bool scale_grad_by_freq, int64_t mode, bool sparse, const ::std::optional<at::Tensor> & per_sample_weights, bool include_last_offset);
|
| 26 |
+
};
|
| 27 |
+
|
| 28 |
+
struct TORCH_API embedding_bag_padding_idx {
|
| 29 |
+
using schema = ::std::tuple<at::Tensor,at::Tensor,at::Tensor,at::Tensor> (const at::Tensor &, const at::Tensor &, const at::Tensor &, bool, int64_t, bool, const ::std::optional<at::Tensor> &, bool, ::std::optional<int64_t>);
|
| 30 |
+
using ptr_schema = schema*;
|
| 31 |
+
// See Note [static constexpr char* members for windows NVCC]
|
| 32 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(name, "aten::embedding_bag")
|
| 33 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(overload_name, "padding_idx")
|
| 34 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(schema_str, "embedding_bag.padding_idx(Tensor weight, Tensor indices, Tensor offsets, bool scale_grad_by_freq, int mode, bool sparse, Tensor? per_sample_weights, bool include_last_offset, int? padding_idx) -> (Tensor, Tensor, Tensor, Tensor)")
|
| 35 |
+
static ::std::tuple<at::Tensor,at::Tensor,at::Tensor,at::Tensor> call(const at::Tensor & weight, const at::Tensor & indices, const at::Tensor & offsets, bool scale_grad_by_freq, int64_t mode, bool sparse, const ::std::optional<at::Tensor> & per_sample_weights, bool include_last_offset, ::std::optional<int64_t> padding_idx);
|
| 36 |
+
static ::std::tuple<at::Tensor,at::Tensor,at::Tensor,at::Tensor> redispatch(c10::DispatchKeySet dispatchKeySet, const at::Tensor & weight, const at::Tensor & indices, const at::Tensor & offsets, bool scale_grad_by_freq, int64_t mode, bool sparse, const ::std::optional<at::Tensor> & per_sample_weights, bool include_last_offset, ::std::optional<int64_t> padding_idx);
|
| 37 |
+
};
|
| 38 |
+
|
| 39 |
+
}} // namespace at::_ops
|
parrot/lib/python3.10/site-packages/torch/include/ATen/ops/fractional_max_pool2d_cpu_dispatch.h
ADDED
|
@@ -0,0 +1,25 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
#pragma once
|
| 2 |
+
// @generated by torchgen/gen.py from DispatchKeyFunction.h
|
| 3 |
+
|
| 4 |
+
// NB: The implementing C++ file is RegisterDispatchKey.cpp
|
| 5 |
+
|
| 6 |
+
// The only #includes we need are for custom classes that have defaults in the C++ API
|
| 7 |
+
#include <c10/core/MemoryFormat.h>
|
| 8 |
+
#include <c10/core/Scalar.h>
|
| 9 |
+
#include <ATen/core/Reduction.h>
|
| 10 |
+
|
| 11 |
+
// Forward declarations of any types needed in the operator signatures.
|
| 12 |
+
// We can't directly include these classes because it will cause circular include dependencies.
|
| 13 |
+
// This file is included by TensorBody.h, which defines the Tensor class.
|
| 14 |
+
#include <ATen/core/ATen_fwd.h>
|
| 15 |
+
|
| 16 |
+
namespace at {
|
| 17 |
+
|
| 18 |
+
namespace cpu {
|
| 19 |
+
|
| 20 |
+
TORCH_API ::std::tuple<at::Tensor,at::Tensor> fractional_max_pool2d(const at::Tensor & self, at::IntArrayRef kernel_size, at::IntArrayRef output_size, const at::Tensor & random_samples);
|
| 21 |
+
TORCH_API ::std::tuple<at::Tensor &,at::Tensor &> fractional_max_pool2d_out(at::Tensor & output, at::Tensor & indices, const at::Tensor & self, at::IntArrayRef kernel_size, at::IntArrayRef output_size, const at::Tensor & random_samples);
|
| 22 |
+
TORCH_API ::std::tuple<at::Tensor &,at::Tensor &> fractional_max_pool2d_outf(const at::Tensor & self, at::IntArrayRef kernel_size, at::IntArrayRef output_size, const at::Tensor & random_samples, at::Tensor & output, at::Tensor & indices);
|
| 23 |
+
|
| 24 |
+
} // namespace cpu
|
| 25 |
+
} // namespace at
|
parrot/lib/python3.10/site-packages/torch/include/ATen/ops/hinge_embedding_loss_ops.h
ADDED
|
@@ -0,0 +1,28 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
#pragma once
|
| 2 |
+
|
| 3 |
+
// @generated by torchgen/gen.py from Operator.h
|
| 4 |
+
|
| 5 |
+
#include <tuple>
|
| 6 |
+
#include <vector>
|
| 7 |
+
|
| 8 |
+
// Forward declarations of any types needed in the operator signatures.
|
| 9 |
+
// We can't directly include these classes because it will cause circular include dependencies.
|
| 10 |
+
// This file is included by TensorBody.h, which defines the Tensor class.
|
| 11 |
+
#include <ATen/core/ATen_fwd.h>
|
| 12 |
+
|
| 13 |
+
namespace at {
|
| 14 |
+
namespace _ops {
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
struct TORCH_API hinge_embedding_loss {
|
| 18 |
+
using schema = at::Tensor (const at::Tensor &, const at::Tensor &, double, int64_t);
|
| 19 |
+
using ptr_schema = schema*;
|
| 20 |
+
// See Note [static constexpr char* members for windows NVCC]
|
| 21 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(name, "aten::hinge_embedding_loss")
|
| 22 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(overload_name, "")
|
| 23 |
+
STATIC_CONSTEXPR_STR_INL_EXCEPT_WIN_CUDA(schema_str, "hinge_embedding_loss(Tensor self, Tensor target, float margin=1.0, int reduction=Mean) -> Tensor")
|
| 24 |
+
static at::Tensor call(const at::Tensor & self, const at::Tensor & target, double margin, int64_t reduction);
|
| 25 |
+
static at::Tensor redispatch(c10::DispatchKeySet dispatchKeySet, const at::Tensor & self, const at::Tensor & target, double margin, int64_t reduction);
|
| 26 |
+
};
|
| 27 |
+
|
| 28 |
+
}} // namespace at::_ops
|
parrot/lib/python3.10/site-packages/torch/include/ATen/ops/index_select_native.h
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
#pragma once
|
| 2 |
+
|
| 3 |
+
// @generated by torchgen/gen.py from NativeFunction.h
|
| 4 |
+
|
| 5 |
+
#include <c10/core/Scalar.h>
|
| 6 |
+
#include <c10/core/Storage.h>
|
| 7 |
+
#include <c10/core/TensorOptions.h>
|
| 8 |
+
#include <c10/util/Deprecated.h>
|
| 9 |
+
#include <c10/util/Optional.h>
|
| 10 |
+
#include <c10/core/QScheme.h>
|
| 11 |
+
#include <ATen/core/Reduction.h>
|
| 12 |
+
#include <ATen/core/Tensor.h>
|
| 13 |
+
#include <tuple>
|
| 14 |
+
#include <vector>
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
namespace at {
|
| 18 |
+
namespace native {
|
| 19 |
+
TORCH_API at::Tensor index_select_cpu_(const at::Tensor & self, int64_t dim, const at::Tensor & index);
|
| 20 |
+
TORCH_API at::Tensor & index_select_out_cpu_(const at::Tensor & self, int64_t dim, const at::Tensor & index, at::Tensor & out);
|
| 21 |
+
TORCH_API at::Tensor index_select_cuda(const at::Tensor & self, int64_t dim, const at::Tensor & index);
|
| 22 |
+
TORCH_API at::Tensor & index_select_out_cuda(const at::Tensor & self, int64_t dim, const at::Tensor & index, at::Tensor & out);
|
| 23 |
+
TORCH_API at::Tensor index_select_sparse_cpu(const at::Tensor & self, int64_t dim, const at::Tensor & index);
|
| 24 |
+
TORCH_API at::Tensor index_select_sparse_cuda(const at::Tensor & self, int64_t dim, const at::Tensor & index);
|
| 25 |
+
TORCH_API at::Tensor index_select_quantized_cpu_(const at::Tensor & self, int64_t dim, const at::Tensor & index);
|
| 26 |
+
TORCH_API at::Tensor index_select_quantized_cuda(const at::Tensor & self, int64_t dim, const at::Tensor & index);
|
| 27 |
+
TORCH_API at::Tensor index_select(const at::Tensor & self, at::Dimname dim, const at::Tensor & index);
|
| 28 |
+
TORCH_API at::Tensor & index_select_out(const at::Tensor & self, at::Dimname dim, const at::Tensor & index, at::Tensor & out);
|
| 29 |
+
} // namespace native
|
| 30 |
+
} // namespace at
|
parrot/lib/python3.10/site-packages/torch/include/ATen/ops/leaky_relu_meta.h
ADDED
|
@@ -0,0 +1,27 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
#pragma once
|
| 2 |
+
|
| 3 |
+
// @generated by torchgen/gen.py from NativeMetaFunction.h
|
| 4 |
+
|
| 5 |
+
#include <c10/core/Scalar.h>
|
| 6 |
+
#include <c10/core/Storage.h>
|
| 7 |
+
#include <c10/core/TensorOptions.h>
|
| 8 |
+
#include <c10/util/Deprecated.h>
|
| 9 |
+
#include <c10/util/Optional.h>
|
| 10 |
+
#include <c10/core/QScheme.h>
|
| 11 |
+
#include <ATen/core/Reduction.h>
|
| 12 |
+
#include <ATen/TensorIterator.h>
|
| 13 |
+
#include <ATen/TensorMeta.h>
|
| 14 |
+
#include <tuple>
|
| 15 |
+
#include <vector>
|
| 16 |
+
|
| 17 |
+
namespace at {
|
| 18 |
+
namespace meta {
|
| 19 |
+
|
| 20 |
+
struct TORCH_API structured_leaky_relu : public TensorIteratorBase {
|
| 21 |
+
|
| 22 |
+
|
| 23 |
+
void meta(const at::Tensor & self, const at::Scalar & negative_slope);
|
| 24 |
+
};
|
| 25 |
+
|
| 26 |
+
} // namespace native
|
| 27 |
+
} // namespace at
|