""" Author(s): Matthew Loper See LICENCE.txt for licensing and contact information. """ from . import ch import numpy as np from os.path import join, split from six import StringIO import numpy import chumpy from six.moves import cPickle as pickle src = '' num_passed = 0 num_not_passed = 0 which_passed = [] def r(fn_name, args_req, args_opt, nplib=numpy, chlib=chumpy): global num_passed, num_not_passed result = [None, None] for lib in [nplib, chlib]: # if fn_name is 'svd' and lib is chlib: # import pdb; pdb.set_trace() if lib is nplib: fn = getattr(lib, fn_name) else: try: fn = getattr(lib, fn_name) except AttributeError: result[0] = 'missing' result[1] = 'missing' num_not_passed += 1 continue try: if isinstance(args_req, dict): _ = fn(**args_req) else: _ = fn(*args_req) if lib is chlib: result[0] = 'passed' num_passed += 1 global which_passed which_passed.append(fn_name) if hasattr(_, 'dterms'): try: _.r try: pickle.dumps(_) except: result[0] += ' (but unpickleable!)' except: import pdb; pdb.set_trace() result[0] += '(but cant get result!)' except Exception as e: if e is TypeError: import pdb; pdb.set_trace() if lib is nplib: import pdb; pdb.set_trace() else: num_not_passed += 1 # if fn_name == 'rot90': # import pdb; pdb.set_trace() result[0] = e.__class__.__name__ try: if isinstance(args_req, dict): fn(**dict(list(args_req.items()) + list(args_opt.items()))) else: fn(*args_req, **args_opt) if lib is chlib: result[1] = 'passed' except Exception as e: if e is TypeError: import pdb; pdb.set_trace() result[1] = e.__class__.__name__ # print '%s: %s, %s' % (fn_name, result[0], result[1]) append(fn_name, result[0], result[1]) def make_row(a, b, c, b_color, c_color): global src src += '%s%s%s' % (a,b_color, b,c_color, c) def append(a, b, c): global src b_color = 'white' c_color = 'white' b = b.replace('NotImplementedError', 'not yet implemented') c = c.replace('NotImplementedError', 'not yet implemented') b = b.replace('WontImplement', "won't implement") c = c.replace('WontImplement', "won't implement") lookup = { 'passed': 'lightgreen', "won't implement": 'lightgray', 'untested': 'lightyellow', 'not yet implemented': 'pink' } b_color = lookup[b] if b in lookup else 'white' c_color = lookup[c] if c in lookup else 'white' print('%s: %s, %s' % (a,b,c)) make_row(a, b, c, b_color, c_color) def m(s): append(s, 'unknown', 'unknown') global num_not_passed num_not_passed += 1 def hd3(s): global src src += '

%s

' % (s,) def hd2(s): global src src += '

' src += '' % (s,) def main(): #sample_array ############################### hd2('Array Creation Routines') hd3('Ones and zeros') r('empty', {'shape': (2,4,2)}, {'dtype': np.uint8, 'order': 'C'}) r('empty_like', {'prototype': np.empty((2,4,2))}, {'dtype': np.float64, 'order': 'C'}) r('eye', {'N': 10}, {'M': 5, 'k': 0, 'dtype': np.float64}) r('identity', {'n': 10}, {'dtype': np.float64}) r('ones', {'shape': (2,4,2)}, {'dtype': np.uint8, 'order': 'C'}) r('ones_like', {'a': np.empty((2,4,2))}, {'dtype': np.float64, 'order': 'C'}) r('zeros', {'shape': (2,4,2)}, {'dtype': np.uint8, 'order': 'C'}) r('zeros_like', {'a': np.empty((2,4,2))}, {'dtype': np.float64, 'order': 'C'}) hd3('From existing data') r('array', {'object': [1,2,3]}, {'dtype': np.float64, 'order': 'C', 'subok': False, 'ndmin': 2}) r('asarray', {'a': np.array([1,2,3])}, {'dtype': np.float64, 'order': 'C'}) r('asanyarray', {'a': np.array([1,2,3])}, {'dtype': np.float64, 'order': 'C'}) r('ascontiguousarray', {'a': np.array([1,2,3])}, {'dtype': np.float64}) r('asmatrix', {'data': np.array([1,2,3])}, {'dtype': np.float64}) r('copy', (np.array([1,2,3]),), {}) r('frombuffer', {'buffer': np.array([1,2,3])}, {}) m('fromfile') r('fromfunction', {'function': lambda i, j: i + j, 'shape': (3, 3)}, {'dtype': np.float64}) # function, shape, **kwargs # lambda i, j: i + j, (3, 3), dtype=int r('fromiter', {'iter': [1,2,3,4], 'dtype': np.float64}, {'count': 2}) r('fromstring', {'string': '\x01\x02', 'dtype': np.uint8}, {}) r('loadtxt', {'fname': StringIO("0 1\n2 3")}, {}) hd3('Creating record arrays (wont be implemented)') hd3('Creating character arrays (wont be implemented)') hd3('Numerical ranges') r('arange', {'start': 0, 'stop': 10}, {'step': 2, 'dtype': np.float64}) r('linspace', {'start': 0, 'stop': 10}, {'num': 2, 'endpoint': 10, 'retstep': 1}) r('logspace', {'start': 0, 'stop': 10}, {'num': 2, 'endpoint': 10, 'base': 1}) r('meshgrid', ([1,2,3], [4,5,6]), {}) m('mgrid') m('ogrid') hd3('Building matrices') r('diag', {'v': np.arange(9).reshape((3,3))}, {'k': 0}) r('diagflat', {'v': [[1,2], [3,4]]}, {}) r('tri', {'N': 3}, {'M': 5, 'k': 2, 'dtype': np.float64}) r('tril', {'m': [[1,2,3],[4,5,6],[7,8,9],[10,11,12]]}, {'k': -1}) r('triu', {'m': [[1,2,3],[4,5,6],[7,8,9],[10,11,12]]}, {'k': -1}) r('vander', {'x': np.array([1, 2, 3, 5])}, {'N': 3}) ############################### hd2('Array manipulation routines') hd3('Basic operations') r('copyto', {'dst': np.eye(3), 'src': np.eye(3)}, {}) hd3('Changing array shape') r('reshape', {'a': np.eye(3), 'newshape': (9,)}, {'order' : 'C'}) r('ravel', {'a': np.eye(3)}, {'order' : 'C'}) m('flat') m('flatten') hd3('Transpose-like operations') r('rollaxis', {'a': np.ones((3,4,5,6)), 'axis': 3}, {'start': 0}) r('swapaxes', {'a': np.array([[1,2,3]]), 'axis1': 0, 'axis2': 1}, {}) r('transpose', {'a': np.arange(4).reshape((2,2))}, {'axes': (1,0)}) hd3('Changing number of dimensions') r('atleast_1d', (np.eye(3),), {}) r('atleast_2d', (np.eye(3),), {}) r('atleast_3d', (np.eye(3),), {}) m('broadcast') m('broadcast_arrays') r('expand_dims', (np.array([1,2]),2), {}) r('squeeze', {'a': (np.array([[[1,2,3]]]))}, {}) hd3('Changing kind of array') r('asarray', {'a': np.array([1,2,3])}, {'dtype': np.float64, 'order': 'C'}) r('asanyarray', {'a': np.array([1,2,3])}, {'dtype': np.float64, 'order': 'C'}) r('asmatrix', {'data': np.array([1,2,3])}, {}) r('asfarray', {'a': np.array([1,2,3])}, {}) r('asfortranarray', {'a': np.array([1,2,3])}, {}) r('asscalar', {'a': np.array([24])}, {}) r('require', {'a': np.array([24])}, {}) hd3('Joining arrays') m('column_stack') r('concatenate', ((np.eye(3), np.eye(3)),1), {}) r('dstack', ((np.eye(3), np.eye(3)),), {}) r('hstack', ((np.eye(3), np.eye(3)),), {}) r('vstack', ((np.eye(3), np.eye(3)),), {}) hd3('Splitting arrays') m('array_split') m('dsplit') m('hsplit') m('split') m('vsplit') hd3('Tiling arrays') r('tile', (np.array([0, 1, 2]),2), {}) r('repeat', (np.array([[1,2],[3,4]]), 3), {'axis': 1}) hd3('Adding and removing elements') m('delete') m('insert') m('append') m('resize') m('trim_zeros') m('unique') hd3('Rearranging elements') r('fliplr', (np.eye(3),), {}) r('flipud', (np.eye(3),), {}) r('reshape', {'a': np.eye(3), 'newshape': (9,)}, {'order' : 'C'}) r('roll', (np.arange(10), 2), {}) r('rot90', (np.arange(4).reshape((2,2)),), {}) ############################### hd2('Linear algebra (numpy.linalg)') extra_args = {'nplib': numpy.linalg, 'chlib': ch.linalg} hd3('Matrix and dot products') r('dot', {'a': np.eye(3), 'b': np.eye(3)}, {}) r('dot', {'a': np.eye(3).ravel(), 'b': np.eye(3).ravel()}, {}) r('vdot', (np.eye(3).ravel(), np.eye(3).ravel()), {}) r('inner', (np.eye(3).ravel(), np.eye(3).ravel()), {}) r('outer', (np.eye(3).ravel(), np.eye(3).ravel()), {}) r('tensordot', {'a': np.eye(3), 'b': np.eye(3)}, {}) m('einsum') r('matrix_power', {'M': np.eye(3), 'n': 2}, {}, **extra_args) r('kron', {'a': np.eye(3), 'b': np.eye(3)}, {}) hd3('Decompositions') r('cholesky', {'a': np.eye(3)}, {}, **extra_args) r('qr', {'a': np.eye(3)}, {}, **extra_args) r('svd', (np.eye(3),), {}, **extra_args) hd3('Matrix eigenvalues') r('eig', (np.eye(3),), {}, **extra_args) r('eigh', (np.eye(3),), {}, **extra_args) r('eigvals', (np.eye(3),), {}, **extra_args) r('eigvalsh', (np.eye(3),), {}, **extra_args) hd3('Norms and other numbers') r('norm', (np.eye(3),), {}, **extra_args) r('cond', (np.eye(3),), {}, **extra_args) r('det', (np.eye(3),), {}, **extra_args) r('slogdet', (np.eye(3),), {}, **extra_args) r('trace', (np.eye(3),), {}) hd3('Solving equations and inverting matrices') r('solve', (np.eye(3),np.ones(3)), {}, **extra_args) r('tensorsolve', (np.eye(3),np.ones(3)), {}, **extra_args) r('lstsq', (np.eye(3),np.ones(3)), {}, **extra_args) r('inv', (np.eye(3),), {}, **extra_args) r('pinv', (np.eye(3),), {}, **extra_args) r('tensorinv', (np.eye(4*6).reshape((4,6,8,3)),), {'ind': 2}, **extra_args) hd2('Mathematical functions') hd3('Trigonometric functions') r('sin', (np.arange(3),), {}) r('cos', (np.arange(3),), {}) r('tan', (np.arange(3),), {}) r('arcsin', (np.arange(3)/3.,), {}) r('arccos', (np.arange(3)/3.,), {}) r('arctan', (np.arange(3)/3.,), {}) r('hypot', (np.arange(3),np.arange(3)), {}) r('arctan2', (np.arange(3),np.arange(3)), {}) r('degrees', (np.arange(3),), {}) r('radians', (np.arange(3),), {}) r('unwrap', (np.arange(3),), {}) r('unwrap', (np.arange(3),), {}) r('deg2rad', (np.arange(3),), {}) r('rad2deg', (np.arange(3),), {}) hd3('Hyperbolic functions') r('sinh', (np.arange(3),), {}) r('cosh', (np.arange(3),), {}) r('tanh', (np.arange(3),), {}) r('arcsinh', (np.arange(3)/9.,), {}) r('arccosh', (-np.arange(3)/9.,), {}) r('arctanh', (np.arange(3)/9.,), {}) hd3('Rounding') r('around', (np.arange(3),), {}) r('round_', (np.arange(3),), {}) r('rint', (np.arange(3),), {}) r('fix', (np.arange(3),), {}) r('floor', (np.arange(3),), {}) r('ceil', (np.arange(3),), {}) r('trunc', (np.arange(3),), {}) hd3('Sums, products, differences') r('prod', (np.arange(3),), {}) r('sum', (np.arange(3),), {}) r('nansum', (np.arange(3),), {}) r('cumprod', (np.arange(3),), {}) r('cumsum', (np.arange(3),), {}) r('diff', (np.arange(3),), {}) r('ediff1d', (np.arange(3),), {}) r('gradient', (np.arange(3),), {}) r('cross', (np.arange(3), np.arange(3)), {}) r('trapz', (np.arange(3),), {}) hd3('Exponents and logarithms') r('exp', (np.arange(3),), {}) r('expm1', (np.arange(3),), {}) r('exp2', (np.arange(3),), {}) r('log', (np.arange(3),), {}) r('log10', (np.arange(3),), {}) r('log2', (np.arange(3),), {}) r('log1p', (np.arange(3),), {}) r('logaddexp', (np.arange(3), np.arange(3)), {}) r('logaddexp2', (np.arange(3), np.arange(3)), {}) hd3('Other special functions') r('i0', (np.arange(3),), {}) r('sinc', (np.arange(3),), {}) hd3('Floating point routines') r('signbit', (np.arange(3),), {}) r('copysign', (np.arange(3), np.arange(3)), {}) r('frexp', (np.arange(3),), {}) r('ldexp', (np.arange(3), np.arange(3)), {}) hd3('Arithmetic operations') r('add', (np.arange(3), np.arange(3)), {}) r('reciprocal', (np.arange(3),), {}) r('negative', (np.arange(3),), {}) r('multiply', (np.arange(3), np.arange(3)), {}) r('divide', (np.arange(3), np.arange(3)), {}) r('power', (np.arange(3), np.arange(3)), {}) r('subtract', (np.arange(3), np.arange(3)), {}) r('true_divide', (np.arange(3), np.arange(3)), {}) r('floor_divide', (np.arange(3), np.arange(3)), {}) r('fmod', (np.arange(3), np.arange(3)), {}) r('mod', (np.arange(3), np.arange(3)), {}) r('modf', (np.arange(3),), {}) r('remainder', (np.arange(3), np.arange(3)), {}) hd3('Handling complex numbers') m('angle') m('real') m('imag') m('conj') hd3('Miscellaneous') r('convolve', (np.arange(3), np.arange(3)), {}) r('clip', (np.arange(3), 0, 2), {}) r('sqrt', (np.arange(3),), {}) r('square', (np.arange(3),), {}) r('absolute', (np.arange(3),), {}) r('fabs', (np.arange(3),), {}) r('sign', (np.arange(3),), {}) r('maximum', (np.arange(3), np.arange(3)), {}) r('minimum', (np.arange(3), np.arange(3)), {}) r('fmax', (np.arange(3), np.arange(3)), {}) r('fmin', (np.arange(3), np.arange(3)), {}) r('nan_to_num', (np.arange(3),), {}) r('real_if_close', (np.arange(3),), {}) r('interp', (2.5, [1,2,3], [3,2,0]), {}) extra_args = {'nplib': numpy.random, 'chlib': ch.random} hd2('Random sampling (numpy.random)') hd3('Simple random data') r('rand', (3,), {}, **extra_args) r('randn', (3,), {}, **extra_args) r('randint', (3,), {}, **extra_args) r('random_integers', (3,), {}, **extra_args) r('random_sample', (3,), {}, **extra_args) r('random', (3,), {}, **extra_args) r('ranf', (3,), {}, **extra_args) r('sample', (3,), {}, **extra_args) r('choice', (np.ones(3),), {}, **extra_args) r('bytes', (3,), {}, **extra_args) hd3('Permutations') r('shuffle', (np.ones(3),), {}, **extra_args) r('permutation', (3,), {}, **extra_args) hd3('Distributions (these all pass)') r('beta', (.5, .5), {}, **extra_args) r('binomial', (.5, .5), {}, **extra_args) r('chisquare', (.5,), {}, **extra_args) r('dirichlet', ((10, 5, 3), 20,), {}, **extra_args) r('exponential', [], {}, **extra_args) r('f', [1,48,1000], {}, **extra_args) r('gamma', [.5], {}, **extra_args) make_row('...AND 28 OTHERS...', 'passed', 'passed', 'lightgreen', 'lightgreen') hd3('Random generator') r('seed', [], {}, **extra_args) r('get_state', [], {}, **extra_args) r('set_state', [np.random.get_state()], {}, **extra_args) #################################### hd2('Statistics') hd3('Order statistics') r('amin', (np.eye(3),),{}) r('amax', (np.eye(3),),{}) r('nanmin', (np.eye(3),),{}) r('nanmax', (np.eye(3),),{}) r('ptp', (np.eye(3),),{}) r('percentile', (np.eye(3),50),{}) hd3('Averages and variance') r('median', (np.eye(3),),{}) r('average', (np.eye(3),),{}) r('mean', (np.eye(3),),{}) r('std', (np.eye(3),),{}) r('var', (np.eye(3),),{}) r('nanmean', (np.eye(3),),{}) r('nanstd', (np.eye(3),),{}) r('nanvar', (np.eye(3),),{}) hd3('Correlating') r('corrcoef', (np.eye(3),),{}) r('correlate', ([1, 2, 3], [0, 1, 0.5]),{}) r('cov', (np.eye(3),),{}) hd3('Histograms') r('histogram', (np.eye(3),),{}) r('histogram2d', (np.eye(3).ravel(),np.eye(3).ravel()),{}) r('histogramdd', (np.eye(3).ravel(),),{}) r('bincount', (np.asarray(np.eye(3).ravel(), np.uint32),),{}) r('digitize', (np.array([0.2, 6.4, 3.0, 1.6]), np.array([0.0, 1.0, 2.5, 4.0, 10.0])),{}) #################################### hd2('Sorting, searching, and counting') hd3('Sorting') r('sort', (np.array([1,3,1,2.]),), {}) m('lexsort') m('argsort') m('msort') m('sort_complex') m('partition') m('argpartition') # sort(a[, axis, kind, order]) Return a sorted copy of an array. # lexsort(keys[, axis]) Perform an indirect sort using a sequence of keys. # argsort(a[, axis, kind, order]) Returns the indices that would sort an array. # ndarray.sort([axis, kind, order]) Sort an array, in-place. # msort(a) Return a copy of an array sorted along the first axis. # sort_complex(a) Sort a complex array using the real part first, then the imaginary part. # partition(a, kth[, axis, kind, order]) Return a partitioned copy of an array. # argpartition(a, kth[, axis, kind, order]) Perform an indirect partition along the given axis using the algorithm specified by the kind keyword. a5 = np.arange(5) hd3('Searching') r('argmax', (a5,), {}) r('nanargmax', (a5,), {}) r('argmin', (a5,), {}) r('nanargmin', (a5,), {}) r('argwhere', (a5,), {}) r('nonzero', (a5,), {}) r('flatnonzero', (a5,), {}) r('where', (a5>1,), {}) r('searchsorted', (a5,a5), {}) r('extract', (lambda x : x > 1, a5), {}) # argmax(a[, axis]) Indices of the maximum values along an axis. # nanargmax(a[, axis]) Return the indices of the maximum values in the specified axis ignoring # argmin(a[, axis]) Return the indices of the minimum values along an axis. # nanargmin(a[, axis]) Return the indices of the minimum values in the specified axis ignoring # argwhere(a) Find the indices of array elements that are non-zero, grouped by element. # nonzero(a) Return the indices of the elements that are non-zero. # flatnonzero(a) Return indices that are non-zero in the flattened version of a. # where(condition, [x, y]) Return elements, either from x or y, depending on condition. # searchsorted(a, v[, side, sorter]) Find indices where elements should be inserted to maintain order. # extract(condition, arr) Return the elements of an array that satisfy some condition. hd3('Counting') r('count_nonzero', (a5,), {}) #count_nonzero(a) Counts the number of non-zero values in the array a. # histogram(a[, bins, range, normed, weights, ...]) Compute the histogram of a set of data. # histogram2d(x, y[, bins, range, normed, weights]) Compute the bi-dimensional histogram of two data samples. # histogramdd(sample[, bins, range, normed, ...]) Compute the multidimensional histogram of some data. # bincount(x[, weights, minlength]) Count number of occurrences of each value in array of non-negative ints. # digitize(x, bins[, right]) Return the indices of the bins to which each value in input array belongs. global src src = '

%s

' + src + '
' open(join(split(__file__)[0], 'api_compatibility.html'), 'w').write(src) print('passed %d, not passed %d' % (num_passed, num_not_passed)) if __name__ == '__main__': global which_passed main() print(' '.join(which_passed))