MicrobeKG / schema.json
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{
"graph_version": "audited-20260928",
"encoding": "UTF-8",
"empty_cells": "Preserved as empty strings, never inferred as null or NaN.",
"columns": {
"edges": [
{
"name": "head_id",
"type": "string"
},
{
"name": "head_type",
"type": "string"
},
{
"name": "relation",
"type": "string"
},
{
"name": "tail_id",
"type": "string"
},
{
"name": "tail_type",
"type": "string"
},
{
"name": "confidence",
"type": "string"
},
{
"name": "species_source",
"type": "string"
},
{
"name": "source",
"type": "string"
},
{
"name": "evidence",
"type": "string"
},
{
"name": "evidence_type",
"type": "string"
}
],
"nodes": [
{
"name": "node_id",
"type": "string"
},
{
"name": "node_type",
"type": "string"
},
{
"name": "node_name",
"type": "string"
},
{
"name": "source_databases",
"type": "string"
}
]
},
"node_key": [
"node_type",
"node_id"
],
"edge_joins": {
"head": {
"head_type": "node_type",
"head_id": "node_id"
},
"tail": {
"tail_type": "node_type",
"tail_id": "node_id"
}
},
"confidence": "Source-specific text, including labels and numeric-looking values; not a uniform probability.",
"source": "Multiple source labels can be separated by |; retain all labels.",
"evidence": "Original free-form evidence and provenance; preserve verbatim.",
"node_name": "Recorded display label, which may equal the identifier or its suffix.",
"splits": {
"full": "Complete graph table; not a benchmark train/validation/test split."
}
}