Download statistics.json from ZachGu/MicrobeKG: direct link, hf CLI and curl.
- Browser
- Download file 6.16 kB
-
https://huggingface.co/datasets/ZachGu/MicrobeKG/resolve/main/statistics.json
- Command line
-
hf download hf://datasets/ZachGu/MicrobeKG/statistics.json
-
curl -L -o statistics.json https://huggingface.co/datasets/ZachGu/MicrobeKG/resolve/main/statistics.json
6.16 kB
| { | |
| "nodes": 67485, | |
| "assertion_rows": 3647004, | |
| "nodes_by_type": { | |
| "disease": 5212, | |
| "host_gene": 19907, | |
| "intervention": 122, | |
| "metabolite": 25366, | |
| "microbe": 15821, | |
| "substrate": 1057 | |
| }, | |
| "missing_node_names_by_type": {}, | |
| "identifier_derived_or_empty_names_by_type": { | |
| "host_gene": 19907, | |
| "metabolite": 252, | |
| "substrate": 14 | |
| }, | |
| "identifiers_shared_by_multiple_node_types": 568, | |
| "unique_relation_labels": 25, | |
| "relations": { | |
| "associated_with_disease": 40092, | |
| "associated_with_metabolite": 850243, | |
| "belongs_to_class": 10711, | |
| "belongs_to_family": 10549, | |
| "belongs_to_genus": 10241, | |
| "belongs_to_order": 10697, | |
| "belongs_to_phylum": 10806, | |
| "can_utilize": 1496721, | |
| "co_occurs_with": 2599, | |
| "depleted_in": 111390, | |
| "does_not_produce": 17, | |
| "does_not_utilize": 146, | |
| "downregulates_gene": 37769, | |
| "enriched_in": 125974, | |
| "inconsistent_association": 1851, | |
| "intervention_decreases": 343, | |
| "intervention_increases": 429, | |
| "is_a": 8076, | |
| "is_clade_of": 83, | |
| "is_strain_of": 5606, | |
| "produces": 858580, | |
| "therapeutic_target_for": 2165, | |
| "treats_disease": 6006, | |
| "upregulates_gene": 42286, | |
| "utilizes": 3624 | |
| }, | |
| "typed_relation_patterns": [ | |
| { | |
| "head_type": "disease", | |
| "relation": "is_a", | |
| "tail_type": "disease", | |
| "rows": 8076 | |
| }, | |
| { | |
| "head_type": "host_gene", | |
| "relation": "associated_with_disease", | |
| "tail_type": "disease", | |
| "rows": 27145 | |
| }, | |
| { | |
| "head_type": "host_gene", | |
| "relation": "associated_with_metabolite", | |
| "tail_type": "metabolite", | |
| "rows": 848824 | |
| }, | |
| { | |
| "head_type": "host_gene", | |
| "relation": "therapeutic_target_for", | |
| "tail_type": "disease", | |
| "rows": 2165 | |
| }, | |
| { | |
| "head_type": "intervention", | |
| "relation": "intervention_decreases", | |
| "tail_type": "microbe", | |
| "rows": 343 | |
| }, | |
| { | |
| "head_type": "intervention", | |
| "relation": "intervention_increases", | |
| "tail_type": "microbe", | |
| "rows": 429 | |
| }, | |
| { | |
| "head_type": "metabolite", | |
| "relation": "associated_with_disease", | |
| "tail_type": "disease", | |
| "rows": 12947 | |
| }, | |
| { | |
| "head_type": "metabolite", | |
| "relation": "depleted_in", | |
| "tail_type": "disease", | |
| "rows": 88540 | |
| }, | |
| { | |
| "head_type": "metabolite", | |
| "relation": "downregulates_gene", | |
| "tail_type": "host_gene", | |
| "rows": 37269 | |
| }, | |
| { | |
| "head_type": "metabolite", | |
| "relation": "enriched_in", | |
| "tail_type": "disease", | |
| "rows": 99338 | |
| }, | |
| { | |
| "head_type": "metabolite", | |
| "relation": "treats_disease", | |
| "tail_type": "disease", | |
| "rows": 6006 | |
| }, | |
| { | |
| "head_type": "metabolite", | |
| "relation": "upregulates_gene", | |
| "tail_type": "host_gene", | |
| "rows": 41631 | |
| }, | |
| { | |
| "head_type": "microbe", | |
| "relation": "associated_with_metabolite", | |
| "tail_type": "metabolite", | |
| "rows": 1419 | |
| }, | |
| { | |
| "head_type": "microbe", | |
| "relation": "belongs_to_class", | |
| "tail_type": "microbe", | |
| "rows": 10711 | |
| }, | |
| { | |
| "head_type": "microbe", | |
| "relation": "belongs_to_family", | |
| "tail_type": "microbe", | |
| "rows": 10549 | |
| }, | |
| { | |
| "head_type": "microbe", | |
| "relation": "belongs_to_genus", | |
| "tail_type": "microbe", | |
| "rows": 10241 | |
| }, | |
| { | |
| "head_type": "microbe", | |
| "relation": "belongs_to_order", | |
| "tail_type": "microbe", | |
| "rows": 10697 | |
| }, | |
| { | |
| "head_type": "microbe", | |
| "relation": "belongs_to_phylum", | |
| "tail_type": "microbe", | |
| "rows": 10806 | |
| }, | |
| { | |
| "head_type": "microbe", | |
| "relation": "can_utilize", | |
| "tail_type": "substrate", | |
| "rows": 1496721 | |
| }, | |
| { | |
| "head_type": "microbe", | |
| "relation": "co_occurs_with", | |
| "tail_type": "microbe", | |
| "rows": 2599 | |
| }, | |
| { | |
| "head_type": "microbe", | |
| "relation": "depleted_in", | |
| "tail_type": "disease", | |
| "rows": 22850 | |
| }, | |
| { | |
| "head_type": "microbe", | |
| "relation": "does_not_produce", | |
| "tail_type": "metabolite", | |
| "rows": 17 | |
| }, | |
| { | |
| "head_type": "microbe", | |
| "relation": "does_not_utilize", | |
| "tail_type": "substrate", | |
| "rows": 146 | |
| }, | |
| { | |
| "head_type": "microbe", | |
| "relation": "downregulates_gene", | |
| "tail_type": "host_gene", | |
| "rows": 500 | |
| }, | |
| { | |
| "head_type": "microbe", | |
| "relation": "enriched_in", | |
| "tail_type": "disease", | |
| "rows": 26636 | |
| }, | |
| { | |
| "head_type": "microbe", | |
| "relation": "inconsistent_association", | |
| "tail_type": "disease", | |
| "rows": 1851 | |
| }, | |
| { | |
| "head_type": "microbe", | |
| "relation": "is_clade_of", | |
| "tail_type": "microbe", | |
| "rows": 83 | |
| }, | |
| { | |
| "head_type": "microbe", | |
| "relation": "is_strain_of", | |
| "tail_type": "microbe", | |
| "rows": 5606 | |
| }, | |
| { | |
| "head_type": "microbe", | |
| "relation": "produces", | |
| "tail_type": "metabolite", | |
| "rows": 858580 | |
| }, | |
| { | |
| "head_type": "microbe", | |
| "relation": "upregulates_gene", | |
| "tail_type": "host_gene", | |
| "rows": 655 | |
| }, | |
| { | |
| "head_type": "microbe", | |
| "relation": "utilizes", | |
| "tail_type": "substrate", | |
| "rows": 3624 | |
| } | |
| ], | |
| "source_labelled_assertions": { | |
| "AGORA2": 1496721, | |
| "BugSigDB": 15197, | |
| "CTD": 124973, | |
| "Disbiome": 6715, | |
| "GMMAD": 1046640, | |
| "GMrepo_v3": 19849, | |
| "HMDAD": 407, | |
| "HMDB": 850148, | |
| "Lit44": 1941, | |
| "MeSH": 8076, | |
| "NCBI_Taxonomy": 58610, | |
| "NJC19": 5042, | |
| "Peryton": 3439, | |
| "Piccinno_2025": 191, | |
| "Thomas_2019": 52, | |
| "cross_source_conflict": 1054, | |
| "gutMDisorder_v2": 2041, | |
| "gutMGene": 4771, | |
| "mBodyMap": 8252 | |
| }, | |
| "source_counts_overlap": true, | |
| "missing_typed_endpoints": 0 | |
| } | |