import json from collections import OrderedDict import warnings def create_dataset_description_json(path, name, bids_version, hed_version=None, dataset_links=None, dataset_type=None, data_license=None, authors=None, acknowledgements=None, how_to_acknowledge=None, funding=None, ethics_approvals=None, references_and_links=None, doi=None, generated_by=None, source_datasets=None): """Create a dataset_description.json file for a BIDS dataset. Parameters ---------- path : str Path to the dataset_description.json file. name : str Name of the dataset. bids_version : str The BIDS version that was used. Recommended Parameters ---------- hed_version : str or array of strings, recommended The HED version that was used. dataset_links : list, required if BIDS URIs are used List of links to other datasets. dataset_type : str, recommended Type of the dataset. Can be "raw" or "derivative". data_license : str, recommended License of the dataset. authors : list, recommended List of individuals who contributed to the creation/curation of the dataset. generated_by : list, recommended Used to specify provenance of the dataset. source_datasets : list, recommended Used to specify the locations and relevant attributes of all source datasets. Valid values are "URL", "DOI" or "Version". Optional Parameters ---------- acknowledgements : str, optional Text acknowledging contributions of individuals or institutions beyond those listed in Authors or Funding. how_to_acknowledge : str, optional How to acknowledge the dataset. funding : list, optional List of funding sources. ethics_approvals : list, optional List of ethics approvals. references_and_links : list, optional List of references to publication that contain information on the dataset, or links. doi : str, optional DOI of the dataset (not the paper). """ # Check if values are of correct type if (dataset_type not in ['raw', 'derivative']): raise ValueError('dataset_type must be either "raw" or "derivative"') if (source_datasets not in ['URL', 'DOI', 'Version', None]): raise ValueError('source_datasets must be either "URL", "DOI" or "Version"') if isinstance(doi, str): if not doi.startswith('doi:'): warnings.warn('DOI should start with "doi:"') # Check if required fields are filled in if (name is None): raise ValueError('name is required') if (bids_version is None): raise ValueError('bids_version is required') # Prepare dataset_description.json description = OrderedDict([ ('Name', name), ('BIDSVersion', bids_version), ('HEDVersion', hed_version), ('DatasetType', dataset_type), ('DatasetLinks', dataset_links), ('License', data_license), ('Authors', authors), ('Acknowledgements', acknowledgements), ('HowToAcknowledge', how_to_acknowledge), ('Funding', funding), ('EthicsApprovals', ethics_approvals), ('ReferencesAndLinks', references_and_links), ('DatasetDOI', doi), ('GeneratedBy', generated_by), ('SourceDatasets', source_datasets)]) # Remove None values pop_keys = [key for key, val in description.items() if val is None] for key in pop_keys: description.pop(key) # Only write data that is not None with open(path, 'w') as outfile: json.dump(description, outfile, indent=4)