zscreen_pilot_data / external_reference /download_datasets.ps1
Swamy71's picture
Add external_reference
b282437 verified
Raw
History Blame Contribute Delete
1.92 kB
$datasets = @{
"SrivatsanTrapnell2020_sciplex3.h5ad" = "https://zenodo.org/api/records/13350497/files/SrivatsanTrapnell2020_sciplex3.h5ad/content"
"SrivatsanTrapnell2020_sciplex2.h5ad" = "https://zenodo.org/api/records/13350497/files/SrivatsanTrapnell2020_sciplex2.h5ad/content"
"SrivatsanTrapnell2020_sciplex4.h5ad" = "https://zenodo.org/api/records/13350497/files/SrivatsanTrapnell2020_sciplex4.h5ad/content"
"JoungZhang2023_combinatorial.h5ad" = "https://zenodo.org/api/records/13350497/files/JoungZhang2023_combinatorial.h5ad/content"
"ReplogleWeissman2022_rpe1.h5ad" = "https://zenodo.org/api/records/13350497/files/ReplogleWeissman2022_rpe1.h5ad/content"
"GasperiniShendure2019_lowMOI.h5ad" = "https://zenodo.org/api/records/13350497/files/GasperiniShendure2019_lowMOI.h5ad/content"
"GasperiniShendure2019_highMOI.h5ad" = "https://zenodo.org/api/records/13350497/files/GasperiniShendure2019_highMOI.h5ad/content"
"AdamsonWeissman2016_GSM2406681_10X010.h5ad" = "https://zenodo.org/api/records/13350497/files/AdamsonWeissman2016_GSM2406681_10X010.h5ad/content"
"DixitRegev2016_K562_TFs_High_MOI.h5ad" = "https://zenodo.org/api/records/13350497/files/DixitRegev2016_K562_TFs_High_MOI.h5ad/content"
"TianKampmann2021_CRISPRa.h5ad" = "https://zenodo.org/api/records/13350497/files/TianKampmann2021_CRISPRa.h5ad/content"
}
$outDir = "scperturb_downloads"
if (-not (Test-Path -Path $outDir)) {
New-Item -ItemType Directory -Path $outDir | Out-Null
}
foreach ($dataset in $datasets.GetEnumerator()) {
$name = $dataset.Key
$url = $dataset.Value
$outFile = Join-Path -Path $outDir -ChildPath $name
if (-not (Test-Path -Path $outFile)) {
Write-Host "Downloading $name ..."
curl.exe -L -s -o $outFile $url
Write-Host "Finished $name"
} else {
Write-Host "$name already exists."
}
}
Write-Host "All downloads completed."