Add raw_counts_data

.gitattributes

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 # Video files - compressed
 *.mp4 filter=lfs diff=lfs merge=lfs -text
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+raw_counts_data/counts.h5ad filter=lfs diff=lfs merge=lfs -text

raw_counts_data/MasterFile.parquet

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+oid sha256:01460957be1fd1119e1afc36a1848c77bb78812eebb87c0665a50fb269ec1166
+size 501509914

raw_counts_data/counts.h5ad

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+size 3537733834

raw_counts_data/data_shape_summary.md

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+# Z-Screen Dataset: Global Data Map & Architecture Summary
+
+This report maps the structural dimensions, screening configurations, cell lines, libraries, and device associations for the current dataset.
+
+> [!NOTE]
+> This dataset contains transcriptomic counts representing **768,162 nanowells** profiled across **49 devices** (0–48), testing **14 libraries** against **6 cell lines / clone variants**.
+> 
+> **Nanowell Architecture:** Each row/observation in the data represents a single **nanowell** rather than an individual cell. Each physical nanowell is **90 microns in diameter by 120 microns tall** and holds approximately **2–10 cells**.
+
+---
+
+## 📊 High-Level Metrics
+
+| Metric | Count | Details |
+| :--- | :--- | :--- |
+| **Total Wells (Observations)** | **768,162** | Mapped 1-to-1 across `MasterFile`, `chemistry`, and `counts.h5ad` |
+| **Total Features (Genes)** | **46,944** | Gene expression profiles stored in `counts.h5ad` |
+| **Screening Devices** | **49** | Numbered 0 to 48 |
+| **Unique Cell Lines** | **6** | HEK293, HEK293-clone, A549, H1650, THP1, AEC7 |
+| **Screened Libraries** | **14** | 9 Named control compounds/control libraries, 3 OBOC libraries, 2 Control bead libraries |
+| **Unique Compounds / Precursors** | **142,227** | 78 named controls, 142,149 OBOC building blocks, and controls |
+
+---
+
+## 🧪 Libraries & Nomenclature Breakdown
+
+The screening libraries and control sets are classified using the following nomenclature:
+* **`ZEL` Prefix**: Represents **One-Bead One-Compound (OBOC) combinatorial libraries** (testing building block precursor fragments, e.g., `ZEL024`, `ZEL028-2`, `ZEL031`).
+* **`ZIC` Prefix**: Represents **named control compounds** (testing targeted, fully synthesized compounds, e.g., target inhibition screen `ZIC008`).
+* **No-Compound Controls**: 
+  * **`ZEL026-2`** represents a **set of no-compound control beads** (not a combinatorial library).
+  * **`ZIC005`** & **`ZIC005-2`** represent **no-compound controls** (with `ZIC005` profiling water/vehicle controls).
+
+| Library | Nomenclature Category | Unique Compound IDs | Unique SMILES | Unique Names | Nanowell Count |
+| :--- | :--- | :---: | :---: | :---: | :---: |
+| **ZIC008** | Named Control Compounds | 35 | 35 | 35 | 256,052 |
+| **ZEL024** | OBOC Combinatorial Library | 13,934 | 13,934 | 1 | 175,285 |
+| **ZEL028-2** | OBOC Combinatorial Library | 117,950 | 117,950 | 1 | 134,821 |
+| **ZEL026-2** | No-Compound Control Beads | 0 | 0 | 1 | 95,583 |
+| **ZEL031** | OBOC Combinatorial Library | 10,265 | 10,265 | 1 | 43,241 |
+| **ZIC009** | Named Control Compounds | 31 | 31 | 31 | 31,107 |
+| **ZIC002** | Named Control Compounds | 7 | 0 | 7 | 10,999 |
+| **ZIC005-2** | No-Compound Control | 0 | 0 | 1 | 7,891 |
+| **ZIC001** | Named Control Compounds | 2 | 2 | 2 | 6,569 |
+| **ZIC006** | Named Control Compounds | 1 | 1 | 1 | 2,099 |
+| **ZIC004** | Named Control Compounds | 1 | 1 | 1 | 1,913 |
+| **ZIC003** | Named Control Compounds | 2 | 0 | 2 | 1,880 |
+| **ZIC007** | Named Control Compounds | 4 | 4 | 4 | 565 |
+| **ZIC005** | No-Compound Control (Water) | 1 | 1 | 1 | 157 |
+| **Total** | | **142,227** | **142,218** | **79** | **768,162** |
+
+---
+
+## 🧫 Cell Line Screen Matrix
+
+The table below shows the nanowell count distribution for each library screened across each cell line:
+
+| Library | A549 | AEC7 | H1650 | HEK293 | HEK293-clone | THP1 | Total Wells |
+| :--- | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+| **ZEL024** | 0 | 0 | 21,545 | 153,740 | 0 | 0 | 175,285 |
+| **ZEL026-2** | 26,718 | 36,827 | 17,086 | 0 | 14,952 | 0 | 95,583 |
+| **ZEL028-2** | 42,435 | 0 | 26,694 | 65,692 | 0 | 0 | 134,821 |
+| **ZEL031** | 20,868 | 0 | 431 | 0 | 0 | 21,942 | 43,241 |
+| **ZIC001** | 0 | 0 | 1,229 | 3,858 | 0 | 1,482 | 6,569 |
+| **ZIC002** | 0 | 0 | 806 | 9,558 | 0 | 635 | 10,999 |
+| **ZIC003** | 0 | 0 | 378 | 919 | 0 | 583 | 1,880 |
+| **ZIC004** | 122 | 0 | 411 | 0 | 0 | 1,380 | 1,913 |
+| **ZIC005** | 0 | 0 | 109 | 0 | 0 | 48 | 157 |
+| **ZIC005-2** | 0 | 7,891 | 0 | 0 | 0 | 0 | 7,891 |
+| **ZIC006** | 207 | 0 | 631 | 0 | 0 | 1,261 | 2,099 |
+| **ZIC007** | 0 | 0 | 452 | 0 | 0 | 113 | 565 |
+| **ZIC008** | 84,952 | 91,448 | 26,382 | 19,010 | 34,260 | 0 | 256,052 |
+| **ZIC009** | 0 | 31,107 | 0 | 0 | 0 | 0 | 31,107 |
+
+---
+
+## 📱 Devices Analysis & Metadata Mapping
+
+### 1. Is each device an individual cell line?
+**Yes.** Every physical screening device (0–48) runs exactly **one cell line** (no cell line mixing on-chip).
+
+### 2. Is each device a unique library?
+**No.** Every device contains **multiple libraries** (ranging from **2 to 8** libraries pooled per device).
+
+### 3. How many devices contain no-compound controls?
+* **No-Compound Controls**: Present in **24 devices** (Devices 8, 9, 17, 18, 21, 22, 29, 30, and 33 through 48, representing `capture_only` roles and water vehicle control sets).
+* **OBOC Combinatorial Libraries**: Present in **24 devices** (Devices 0–7, 10, 12–16, 19, 20, 23–28, 31, 32).
+* **Only 1 Device (Device 11)** contains named control compounds exclusively with no-compound or combinatorial controls.
+
+---
+
+## 🗺️ Detailed Device Map
+
+The device-by-device configuration shows cell line mapping and library counts:
+
+| Device ID | Cell Line | Libraries Mapped | Wells Count | Control Roles |
+| :---: | :--- | :--- | :---: | :--- |
+| **Device 0** | HEK293 | `ZEL024, ZIC002, ZIC001` | 27,361 | OBOC Library (25,310), Named Controls (2,051) |
+| **Device 1** | HEK293 | `ZEL024, ZIC002, ZIC001` | 22,011 | OBOC Library (20,398), Named Controls (1,613) |
+| **Device 2** | HEK293 | `ZEL024, ZIC002, ZIC001` | 32,906 | OBOC Library (30,307), Named Controls (2,599) |
+| **Device 3** | HEK293 | `ZEL024, ZIC002, ZIC001` | 30,518 | OBOC Library (28,064), Named Controls (2,454) |
+| **Device 4** | HEK293 | `ZEL024, ZIC003, ZIC002, ZIC001` | 30,013 | OBOC Library (26,973), Named Controls (3,040) |
+| **Device 5** | HEK293 | `ZEL024, ZIC003, ZIC002, ZIC001` | 25,266 | OBOC Library (22,688), Named Controls (2,578) |
+| **Device 6** | H1650 | `ZEL024, ZIC002, ZIC005, ZIC001, ZIC003` | 20,099 | OBOC Library (19,253), Named Controls (846 - including ZIC005 Water Control) |
+| **Device 7** | H1650 | `ZEL024, ZIC003, ZIC005, ZIC002, ZIC001` | 2,555 | OBOC Library (2,292), Named Controls (263 - including ZIC005 Water Control) |
+| **Device 8** | H1650 | `ZEL026-2, ZIC007, ZIC004, ZIC006, ZIC003, ZIC002, ZIC001` | 12,422 | No-Compound Control Beads (10,369), Named Controls (2,053) |
+| **Device 9** | H1650 | `ZEL026-2, ZIC006, ZIC003, ZIC004, ZIC002, ZIC001, ZIC007` | 7,571 | No-Compound Control Beads (6,717), Named Controls (854) |
+| **Device 10** | THP1 | `ZIC006, ZEL031, ZIC007, ZIC004, ZIC005, ZIC002, ZIC003, ZIC001` | 3,748 | OBOC Library (2,837), Named Controls (911 - including ZIC005 Water Control) |
+| **Device 11** | A549 | `ZIC006, ZIC004` | 257 | Named Controls (257) |
+| **Device 12** | THP1 | `ZEL031, ZIC004, ZIC006, ZIC003, ZIC002, ZIC001` | 23,696 | OBOC Library (19,105), Named Controls (4,591) |
+| **Device 13** | A549 | `ZIC008, ZEL031` | 13,602 | Named Controls (7,771), OBOC Library (5,831) |
+| **Device 14** | A549 | `ZIC008, ZEL031` | 9,878 | Named Controls (5,583), OBOC Library (4,295) |
+| **Device 15** | A549 | `ZIC008, ZEL031` | 16,898 | Named Controls (11,376), OBOC Library (5,522) |
+| **Device 16** | A549 | `ZIC008, ZEL031` | 12,261 | Named Controls (7,041), OBOC Library (5,220) |
+| **Device 17** | A549 | `ZIC008, ZEL026-2, ZIC004` | 13,675 | Named Controls (9,757), No-Compound Control Beads (3,918) |
+| **Device 18** | A549 | `ZIC008, ZEL026-2, ZIC004` | 11,332 | Named Controls (8,428), No-Compound Control Beads (2,904) |
+| **Device 19** | H1650 | `ZIC008, ZEL031` | 6,390 | Named Controls (6,283), OBOC Library (107) |
+| **Device 20** | H1650 | `ZIC008, ZEL031` | 14,227 | Named Controls (13,903), OBOC Library (324) |
+| **Device 21** | A549 | `ZEL026-2, ZIC008` | 27,839 | Named Controls (15,125), No-Compound Control Beads (12,714) |
+| **Device 22** | A549 | `ZIC008, ZEL026-2` | 18,240 | Named Controls (11,058), No-Compound Control Beads (7,182) |
+| **Device 23** | A549 | `ZIC008, ZEL028-2` | 23,608 | OBOC Library (20,152), Named Controls (3,456) |
+| **Device 24** | H1650 | `ZIC008, ZEL028-2` | 14,178 | OBOC Library (12,056), Named Controls (2,122) |
+| **Device 25** | A549 | `ZIC008, ZEL028-2` | 27,712 | OBOC Library (22,283), Named Controls (5,429) |
+| **Device 26** | H1650 | `ZIC008, ZEL028-2` | 18,712 | OBOC Library (14,638), Named Controls (4,074) |
+| **Device 27** | HEK293 | `ZIC008, ZEL028-2` | 17,999 | OBOC Library (14,494), Named Controls (3,505) |
+| **Device 28** | HEK293 | `ZIC008, ZEL028-2` | 15,808 | OBOC Library (12,865), Named Controls (2,943) |
+| **Device 29** | HEK293-clone | `ZIC008, ZEL026-2` | 27,829 | Named Controls (19,951), No-Compound Control Beads (7,878) |
+| **Device 30** | HEK293-clone | `ZIC008, ZEL026-2` | 21,383 | Named Controls (14,309), No-Compound Control Beads (7,074) |
+| **Device 31** | HEK293 | `ZIC008, ZEL028-2` | 27,521 | OBOC Library (20,770), Named Controls (6,751) |
+| **Device 32** | HEK293 | `ZIC008, ZEL028-2` | 23,374 | OBOC Library (17,563), Named Controls (5,811) |
+| **Device 33** | AEC7 | `ZIC008, ZEL026-2, ZIC009` | 11,498 | Named Controls (7,910), No-Compound Control Beads (3,588) |
+| **Device 34** | AEC7 | `ZEL026-2, ZIC008, ZIC009` | 11,250 | Named Controls (7,340), No-Compound Control Beads (3,910) |
+| **Device 35** | AEC7 | `ZIC008, ZEL026-2, ZIC009` | 9,165 | Named Controls (6,075), No-Compound Control Beads (3,090) |
+| **Device 36** | AEC7 | `ZIC008, ZEL026-2, ZIC009` | 12,111 | Named Controls (8,004), No-Compound Control Beads (4,107) |
+| **Device 37** | AEC7 | `ZIC008, ZEL026-2, ZIC009` | 13,390 | Named Controls (9,358), No-Compound Control Beads (4,032) |
+| **Device 38** | AEC7 | `ZEL026-2, ZIC008, ZIC009` | 17,504 | Named Controls (12,360), No-Compound Control Beads (5,144) |
+| **Device 39** | AEC7 | `ZIC008, ZEL026-2, ZIC009` | 21,192 | Named Controls (13,801), No-Compound Control Beads (7,391) |
+| **Device 40** | AEC7 | `ZIC008, ZEL026-2, ZIC009` | 16,318 | Named Controls (10,753), No-Compound Control Beads (5,565) |
+| **Device 41** | AEC7 | `ZIC008, ZIC005-2, ZIC009` | 2,929 | Named Controls (2,587), No-Compound Control (342) |
+| **Device 42** | AEC7 | `ZIC008, ZIC009, ZIC005-2` | 4,660 | Named Controls (3,990), No-Compound Control (670) |
+| **Device 43** | AEC7 | `ZIC008, ZIC005-2, ZIC009` | 11,537 | Named Controls (9,698), No-Compound Control (1,839) |
+| **Device 44** | AEC7 | `ZIC008, ZIC005-2, ZIC009` | 10,472 | Named Controls (8,618), No-Compound Control (1,854) |
+| **Device 45** | AEC7 | `ZIC008, ZIC005-2, ZIC009` | 7,223 | Named Controls (6,209), No-Compound Control (1,014) |
+| **Device 46** | AEC7 | `ZIC008, ZIC005-2, ZIC009` | 8,258 | Named Controls (7,242), No-Compound Control (1,016) |
+| **Device 47** | AEC7 | `ZIC008, ZIC009, ZIC005-2` | 5,983 | Named Controls (5,136), No-Compound Control (847) |
+| **Device 48** | AEC7 | `ZIC008, ZIC005-2, ZIC009` | 3,783 | Named Controls (3,474), No-Compound Control (309) |

raw_counts_data/data_shape_visualization.html

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+<!DOCTYPE html>
+<html lang="en">
+<head>
+    <meta charset="UTF-8">
+    <title>Z-Screen Data Shape Explorer</title>
+    <link href="https://fonts.googleapis.com/css2?family=Outfit:wght@300;400;500;600;700&family=JetBrains+Mono:wght@400;500&display=swap" rel="stylesheet">
+    <script src="https://cdn.jsdelivr.net/npm/chart.js"></script>
+    <style>
+        :root {
+            --bg-color: #0b0f19;
+            --card-bg: rgba(17, 25, 40, 0.75);
+            --border-color: rgba(255, 255, 255, 0.08);
+            --text-color: #f3f4f6;
+            --text-muted: #9ca3af;
+            --primary: #8b5cf6;
+            --primary-glow: rgba(139, 92, 246, 0.4);
+            --secondary: #06b6d4;
+            --accent: #f43f5e;
+            --font-main: 'Outfit', sans-serif;
+            --font-mono: 'JetBrains Mono', monospace;
+        }
+
+        * {
+            box-sizing: border-box;
+            margin: 0;
+            padding: 0;
+        }
+
+        body {
+            background-color: var(--bg-color);
+            color: var(--text-color);
+            font-family: var(--font-main);
+            min-height: 100vh;
+            overflow-x: hidden;
+            background-image: 
+                radial-gradient(at 0% 0%, rgba(99, 102, 241, 0.1) 0, transparent 50%),
+                radial-gradient(at 50% 0%, rgba(139, 92, 246, 0.08) 0, transparent 50%),
+                radial-gradient(at 100% 100%, rgba(6, 182, 212, 0.08) 0, transparent 50%);
+            background-attachment: fixed;
+        }
+
+        header {
+            padding: 2.5rem 4rem 1.5rem 4rem;
+            border-bottom: 1px solid var(--border-color);
+            background: rgba(11, 15, 25, 0.8);
+            backdrop-filter: blur(12px);
+            position: sticky;
+            top: 0;
+            z-index: 100;
+            display: flex;
+            justify-content: space-between;
+            align-items: center;
+        }
+
+        .header-title h1 {
+            font-size: 1.8rem;
+            font-weight: 700;
+            background: linear-gradient(135deg, #fff 30%, var(--primary) 70%, var(--secondary) 100%);
+            -webkit-background-clip: text;
+            -webkit-text-fill-color: transparent;
+            margin-bottom: 0.25rem;
+        }
+
+        .header-title p {
+            color: var(--text-muted);
+            font-size: 0.95rem;
+        }
+
+        .nav-tabs {
+            display: flex;
+            gap: 0.5rem;
+            background: rgba(255, 255, 255, 0.03);
+            padding: 0.35rem;
+            border-radius: 30px;
+            border: 1px solid var(--border-color);
+        }
+
+        .tab-btn {
+            background: transparent;
+            border: none;
+            color: var(--text-muted);
+            padding: 0.6rem 1.4rem;
+            font-size: 0.9rem;
+            font-weight: 500;
+            border-radius: 25px;
+            cursor: pointer;
+            transition: all 0.3s cubic-bezier(0.4, 0, 0.2, 1);
+        }
+
+        .tab-btn.active {
+            background: var(--primary);
+            color: #fff;
+            box-shadow: 0 0 15px var(--primary-glow);
+        }
+
+        .tab-btn:hover:not(.active) {
+            color: #fff;
+            background: rgba(255, 255, 255, 0.05);
+        }
+
+        .container {
+            max-width: 1400px;
+            margin: 2rem auto;
+            padding: 0 2rem;
+        }
+
+        .tab-content {
+            display: none;
+        }
+
+        .tab-content.active {
+            display: block;
+            animation: fadeIn 0.4s ease-out;
+        }
+
+        @keyframes fadeIn {
+            from { opacity: 0; transform: translateY(10px); }
+            to { opacity: 1; transform: translateY(0); }
+        }
+
+        /* Dashboard Overview Grid */
+        .stats-grid {
+            display: grid;
+            grid-template-columns: repeat(auto-fit, minmax(220px, 1fr));
+            gap: 1.5rem;
+            margin-bottom: 2rem;
+        }
+
+        .stat-card {
+            background: var(--card-bg);
+            border: 1px solid var(--border-color);
+            border-radius: 16px;
+            padding: 1.5rem;
+            backdrop-filter: blur(16px);
+            position: relative;
+            overflow: hidden;
+            transition: border-color 0.3s;
+        }
+
+        .stat-card:hover {
+            border-color: rgba(139, 92, 246, 0.3);
+        }
+
+        .stat-card::before {
+            content: '';
+            position: absolute;
+            top: 0;
+            left: 0;
+            width: 4px;
+            height: 100%;
+            background: var(--primary);
+        }
+
+        .stat-card.cyan::before { background: var(--secondary); }
+        .stat-card.accent::before { background: var(--accent); }
+
+        .stat-label {
+            color: var(--text-muted);
+            font-size: 0.85rem;
+            text-transform: uppercase;
+            letter-spacing: 0.05em;
+            margin-bottom: 0.5rem;
+        }
+
+        .stat-value {
+            font-size: 2.2rem;
+            font-weight: 700;
+            margin-bottom: 0.25rem;
+            font-family: var(--font-mono);
+        }
+
+        .stat-subtext {
+            color: var(--text-muted);
+            font-size: 0.85rem;
+        }
+
+        .grid-2col {
+            display: grid;
+            grid-template-columns: 1fr 1fr;
+            gap: 2rem;
+            margin-bottom: 2rem;
+        }
+
+        @media (max-width: 900px) {
+            .grid-2col {
+                grid-template-columns: 1fr;
+            }
+        }
+
+        .panel {
+            background: var(--card-bg);
+            border: 1px solid var(--border-color);
+            border-radius: 20px;
+            padding: 2rem;
+            backdrop-filter: blur(16px);
+        }
+
+        .panel-title {
+            font-size: 1.25rem;
+            font-weight: 600;
+            margin-bottom: 1.5rem;
+            display: flex;
+            align-items: center;
+            justify-content: space-between;
+        }
+
+        .panel-subtitle {
+            color: var(--text-muted);
+            font-size: 0.9rem;
+            font-weight: 400;
+        }
+
+        /* Heatmap styling */
+        .heatmap-container {
+            display: flex;
+            flex-direction: column;
+            overflow-x: auto;
+        }
+
+        .heatmap-grid {
+            display: grid;
+            grid-template-columns: 120px repeat(6, 1fr);
+            gap: 6px;
+            margin-top: 1rem;
+            min-width: 700px;
+        }
+
+        .heatmap-header-cell {
+            font-size: 0.9rem;
+            font-weight: 600;
+            text-align: center;
+            padding: 0.75rem 0.5rem;
+            color: var(--text-muted);
+        }
+
+        .heatmap-label-cell {
+            font-size: 0.85rem;
+            font-weight: 500;
+            display: flex;
+            align-items: center;
+            justify-content: flex-end;
+            padding-right: 1rem;
+            font-family: var(--font-mono);
+        }
+
+        .heatmap-cell {
+            border-radius: 6px;
+            padding: 1.2rem 0.5rem;
+            text-align: center;
+            font-size: 0.85rem;
+            font-weight: 600;
+            cursor: pointer;
+            transition: transform 0.2s, box-shadow 0.2s;
+            display: flex;
+            flex-direction: column;
+            justify-content: center;
+            align-items: center;
+        }
+
+        .heatmap-cell:hover {
+            transform: scale(1.05);
+            z-index: 10;
+            box-shadow: 0 0 12px rgba(255, 255, 255, 0.15);
+        }
+
+        .heatmap-cell-value {
+            font-family: var(--font-mono);
+            font-size: 0.85rem;
+        }
+
+        .heatmap-cell-pct {
+            font-size: 0.7rem;
+            font-weight: 400;
+            opacity: 0.8;
+            margin-top: 2px;
+        }
+
+        .heatmap-legend {
+            display: flex;
+            gap: 1.5rem;
+            margin-top: 2rem;
+            justify-content: center;
+            font-size: 0.85rem;
+            color: var(--text-muted);
+        }
+
+        .legend-item {
+            display: flex;
+            align-items: center;
+            gap: 0.5rem;
+        }
+
+        .legend-color {
+            width: 16px;
+            height: 16px;
+            border-radius: 4px;
+        }
+
+        /* Device Table */
+        .search-box {
+            display: flex;
+            gap: 1rem;
+            margin-bottom: 1.5rem;
+        }
+
+        .search-input {
+            flex: 1;
+            background: rgba(255, 255, 255, 0.05);
+            border: 1px solid var(--border-color);
+            border-radius: 30px;
+            padding: 0.75rem 1.5rem;
+            color: #fff;
+            font-family: var(--font-main);
+            font-size: 0.95rem;
+            outline: none;
+            transition: border-color 0.3s;
+        }
+
+        .search-input:focus {
+            border-color: var(--primary);
+        }
+
+        .filter-select {
+            background: rgba(255, 255, 255, 0.05);
+            border: 1px solid var(--border-color);
+            border-radius: 30px;
+            padding: 0.75rem 1.5rem;
+            color: #fff;
+            font-family: var(--font-main);
+            outline: none;
+            cursor: pointer;
+        }
+
+        .table-wrapper {
+            overflow-x: auto;
+            border-radius: 12px;
+            border: 1px solid var(--border-color);
+        }
+
+        table {
+            width: 100%;
+            border-collapse: collapse;
+            text-align: left;
+            font-size: 0.9rem;
+        }
+
+        th {
+            background: rgba(255, 255, 255, 0.02);
+            font-weight: 600;
+            color: var(--text-muted);
+            padding: 1rem;
+            border-bottom: 1px solid var(--border-color);
+            text-transform: uppercase;
+            font-size: 0.8rem;
+            letter-spacing: 0.05em;
+        }
+
+        td {
+            padding: 1rem;
+            border-bottom: 1px solid var(--border-color);
+            vertical-align: middle;
+        }
+
+        tr:last-child td {
+            border-bottom: none;
+        }
+
+        tr:hover td {
+            background: rgba(255, 255, 255, 0.01);
+        }
+
+        .badge {
+            display: inline-block;
+            padding: 0.3rem 0.6rem;
+            border-radius: 20px;
+            font-size: 0.75rem;
+            font-weight: 600;
+            text-transform: uppercase;
+        }
+
+        .badge-purple { background: rgba(139, 92, 246, 0.15); color: #a78bfa; border: 1px solid rgba(139, 92, 246, 0.3); }
+        .badge-cyan { background: rgba(6, 182, 212, 0.15); color: #22d3ee; border: 1px solid rgba(6, 182, 212, 0.3); }
+        .badge-rose { background: rgba(244, 63, 94, 0.15); color: #fb7185; border: 1px solid rgba(244, 63, 94, 0.3); }
+        .badge-orange { background: rgba(249, 115, 22, 0.15); color: #fdba74; border: 1px solid rgba(249, 115, 22, 0.3); }
+        .badge-blue { background: rgba(59, 130, 246, 0.15); color: #60a5fa; border: 1px solid rgba(59, 130, 246, 0.3); }
+
+        /* Library details grid */
+        .lib-grid {
+            display: grid;
+            grid-template-columns: repeat(auto-fill, minmax(320px, 1fr));
+            gap: 1.5rem;
+        }
+
+        .lib-card {
+            background: var(--card-bg);
+            border: 1px solid var(--border-color);
+            border-radius: 16px;
+            padding: 1.5rem;
+            backdrop-filter: blur(12px);
+            display: flex;
+            flex-direction: column;
+            justify-content: space-between;
+        }
+
+        .lib-name {
+            font-size: 1.2rem;
+            font-weight: 600;
+            margin-bottom: 0.5rem;
+            font-family: var(--font-mono);
+            display: flex;
+            justify-content: space-between;
+            align-items: center;
+        }
+
+        .lib-details-row {
+            display: flex;
+            justify-content: space-between;
+            padding: 0.4rem 0;
+            border-bottom: 1px solid rgba(255, 255, 255, 0.04);
+            font-size: 0.9rem;
+        }
+
+        .lib-details-row:last-child {
+            border-bottom: none;
+        }
+
+        .lib-details-label {
+            color: var(--text-muted);
+        }
+
+        .lib-details-val {
+            font-family: var(--font-mono);
+            font-weight: 500;
+        }
+
+        .roles-list {
+            margin-top: 1rem;
+            display: flex;
+            flex-wrap: wrap;
+            gap: 0.5rem;
+        }
+    </style>
+</head>
+<body>
+
+<header>
+    <div class="header-title">
+        <h1>Z-Screen Data Shape Explorer</h1>
+        <p>Interactive structural visualization of nanowells, devices, cell lines, and libraries</p>
+    </div>
+    <div class="nav-tabs">
+        <button class="tab-btn active" onclick="switchTab('tab-overview')">Overview</button>
+        <button class="tab-btn" onclick="switchTab('tab-matrix')">Screen Matrix</button>
+        <button class="tab-btn" onclick="switchTab('tab-devices')">Device Mapping</button>
+        <button class="tab-btn" onclick="switchTab('tab-libraries')">Libraries</button>
+    </div>
+</header>
+
+<div class="container">
+    
+    <!-- OVERVIEW TAB -->
+    <div id="tab-overview" class="tab-content active">
+        <div class="stats-grid">
+            <div class="stat-card">
+                <div class="stat-label">Total Observations (Nanowells)</div>
+                <div class="stat-value">768,162</div>
+                <div class="stat-subtext">Mapped across 49 devices</div>
+            </div>
+            <div class="stat-card cyan">
+                <div class="stat-label">Total Features (Genes)</div>
+                <div class="stat-value">46,944</div>
+                <div class="stat-subtext">In counts.h5ad matrix</div>
+            </div>
+            <div class="stat-card">
+                <div class="stat-label">Screening Devices</div>
+                <div class="stat-value">49</div>
+                <div class="stat-subtext">Numbered 0 to 48</div>
+            </div>
+            <div class="stat-card accent">
+                <div class="stat-label">Unique Compounds</div>
+                <div class="stat-value">142,227</div>
+                <div class="stat-subtext">Including 142.1k building blocks</div>
+            </div>
+        </div>
+
+        <!-- Nanowell Info Alert Box -->
+        <div class="panel" style="margin-bottom: 2rem; border-left: 4px solid var(--secondary); background: rgba(6, 182, 212, 0.04);">
+            <h3 style="color: var(--secondary); font-size: 1.1rem; margin-bottom: 0.5rem; display: flex; align-items: center; gap: 0.5rem;">
+                🔬 Nanowell Architecture Specification
+            </h3>
+            <p style="color: var(--text-color); font-size: 0.95rem; line-height: 1.5;">
+                Each observation (row) in the dataset corresponds to a single **nanowell** rather than a single cell. Each nanowell measures **90 microns in diameter by 120 microns tall** and holds approximately **2 to 10 cells**. The transcriptomic profiles represent the pooled expression of the cells inside each nanowell.
+            </p>
+        </div>
+
+        <div class="grid-2col">
+            <div class="panel">
+                <div class="panel-title">
+                    <span>Nanowells per Cell Line</span>
+                    <span class="panel-subtitle">Total profiled nanowells</span>
+                </div>
+                <div style="height: 300px; position: relative;">
+                    <canvas id="cellLineChart"></canvas>
+                </div>
+            </div>
+            <div class="panel">
+                <div class="panel-title">
+                    <span>Dataset Role Split</span>
+                    <span class="panel-subtitle">By screening category (wells)</span>
+                </div>
+                <div style="height: 300px; position: relative;">
+                    <canvas id="roleChart"></canvas>
+                </div>
+            </div>
+        </div>
+        
+        <div class="panel" style="margin-top: 2rem;">
+            <div class="panel-title">Key Structural Insights</div>
+            <div style="line-height: 1.6; display: grid; grid-template-columns: 1fr 1fr; gap: 2.5rem;">
+                <div>
+                    <h3 style="margin-bottom: 0.5rem; color: var(--secondary);">🔬 Multiplexed Chip Architecture</h3>
+                    <p style="color: var(--text-muted); margin-bottom: 1.25rem;">
+                        Each physical device runs exactly <strong>one cell line</strong>. This eliminates cell mixing within a single microfluidic chip, enabling clean downstream sorting. However, multiple chemical libraries are pooled on each chip (ranging from 2 to 8 libraries per device).
+                    </p>
+                </div>
+                <div>
+                    <h3 style="margin-bottom: 0.5rem; color: var(--accent);">🧪 Named Control Compounds vs. Combinatorial Libraries</h3>
+                    <p style="color: var(--text-muted); margin-bottom: 1.25rem;">
+                        The screen features a split between **One-Bead One-Compound (OBOC) combinatorial libraries** (testing 142.1k chemical precursor fragments across 353.3k wells) and **Named Control Compounds** (testing 78 fully synthesized target compounds across 311.3k wells).
+                    </p>
+                    <h3 style="margin-bottom: 0.5rem; color: var(--primary);">🛡️ No-Compound Control Beads</h3>
+                    <p style="color: var(--text-muted);">
+                        Out of 49 devices, <strong>24 devices</strong> contain no-compound controls (including capture-only control bead library `ZEL026-2` and water/vehicle controls like `ZIC005`). Only <strong>Device 11</strong> lacks control beads entirely, profiling named control compounds exclusively.
+                    </p>
+                </div>
+            </div>
+        </div>
+    </div>
+
+    <!-- MATRIX TAB -->
+    <div id="tab-matrix" class="tab-content">
+        <div class="panel">
+            <div class="panel-title">
+                <div>
+                    Screening Matrix Map
+                    <div class="panel-subtitle">Nanowell counts mapped per library (rows) and cell line (columns)</div>
+                </div>
+            </div>
+            <div class="heatmap-container">
+                <div class="heatmap-grid" id="heatmapGrid">
+                    <!-- JS populated -->
+                </div>
+                <div class="heatmap-legend">
+                    <div class="legend-item"><div class="legend-color" style="background: rgba(139, 92, 246, 0.05); border: 1px solid var(--border-color);"></div> Not Screened</div>
+                    <div class="legend-item"><div class="legend-color" style="background: rgba(139, 92, 246, 0.25);"></div> low (&lt; 2,000 wells)</div>
+                    <div class="legend-item"><div class="legend-color" style="background: rgba(139, 92, 246, 0.55);"></div> medium (2k - 25k wells)</div>
+                    <div class="legend-item"><div class="legend-color" style="background: rgba(139, 92, 246, 0.85);"></div> high (&gt; 25k wells)</div>
+                </div>
+            </div>
+        </div>
+    </div>
+
+    <!-- DEVICES TAB -->
+    <div id="tab-devices" class="tab-content">
+        <div class="panel">
+            <div class="panel-title">
+                <div>
+                    Device-Level Screen Map
+                    <div class="panel-subtitle">Search, filter, and inspect cell line labels and pooled libraries per device</div>
+                </div>
+            </div>
+            
+            <div class="search-box">
+                <input type="text" id="deviceSearch" class="search-input" placeholder="Search devices by ID, cell line, or library..." oninput="filterDevices()">
+                <select id="cellLineFilter" class="filter-select" onchange="filterDevices()">
+                    <option value="">All Cell Lines</option>
+                    <option value="HEK293">HEK293</option>
+                    <option value="HEK293-clone">HEK293-clone</option>
+                    <option value="A549">A549</option>
+                    <option value="H1650">H1650</option>
+                    <option value="THP1">THP1</option>
+                    <option value="AEC7">AEC7</option>
+                </select>
+            </div>
+
+            <div class="table-wrapper">
+                <table id="deviceTable">
+                    <thead>
+                        <tr>
+                            <th>Device ID</th>
+                            <th>Cell Line</th>
+                            <th>Libraries Screened</th>
+                            <th>Nanowell Count</th>
+                            <th>Treatment Split</th>
+                        </tr>
+                    </thead>
+                    <tbody id="deviceTableBody">
+                        <!-- JS populated -->
+                    </tbody>
+                </table>
+            </div>
+        </div>
+    </div>
+
+    <!-- LIBRARIES TAB -->
+    <div id="tab-libraries" class="tab-content">
+        <div class="panel">
+            <div class="panel-title">
+                <div>
+                    Screened Chemical Libraries & Control Sets
+                    <div class="panel-subtitle">Details of compound counts, SMILES configurations, and nomenclature types</div>
+                </div>
+            </div>
+            <div class="lib-grid" id="libGrid">
+                <!-- JS populated -->
+            </div>
+        </div>
+    </div>
+
+</div>
+
+<script>
+    // Embedded JSON structures
+    const results = {
+  "compounds_per_library": {
+    "ZIC008": {
+      "unique_public_compound_ids": 35,
+      "unique_smiles": 35,
+      "unique_names": 35,
+      "condition_roles": {
+        "compound_treatment": 256052
+      }
+    },
+    "ZEL026-2": {
+      "unique_public_compound_ids": 0,
+      "unique_smiles": 0,
+      "unique_names": 1,
+      "condition_roles": {
+        "capture_only": 95583
+      }
+    },
+    "ZEL031": {
+      "unique_public_compound_ids": 10265,
+      "unique_smiles": 10265,
+      "unique_names": 1,
+      "condition_roles": {
+        "building_block_treatment": 43241
+      }
+    },
+    "ZEL028-2": {
+      "unique_public_compound_ids": 117950,
+      "unique_smiles": 117950,
+      "unique_names": 1,
+      "condition_roles": {
+        "building_block_treatment": 134821
+      }
+    },
+    "ZIC004": {
+      "unique_public_compound_ids": 1,
+      "unique_smiles": 1,
+      "unique_names": 1,
+      "condition_roles": {
+        "compound_treatment": 1913
+      }
+    },
+    "ZIC006": {
+      "unique_public_compound_ids": 1,
+      "unique_smiles": 1,
+      "unique_names": 1,
+      "condition_roles": {
+        "compound_treatment": 2099
+      }
+    },
+    "ZIC003": {
+      "unique_public_compound_ids": 2,
+      "unique_smiles": 2,
+      "unique_names": 2,
+      "condition_roles": {
+        "compound_treatment": 1880
+      }
+    },
+    "ZIC002": {
+      "unique_public_compound_ids": 7,
+      "unique_smiles": 7,
+      "unique_names": 7,
+      "condition_roles": {
+        "compound_treatment": 10999
+      }
+    },
+    "ZIC001": {
+      "unique_public_compound_ids": 2,
+      "unique_smiles": 2,
+      "unique_names": 2,
+      "condition_roles": {
+        "compound_treatment": 6569
+      }
+    },
+    "ZEL024": {
+      "unique_public_compound_ids": 13934,
+      "unique_smiles": 13934,
+      "unique_names": 1,
+      "condition_roles": {
+        "building_block_treatment": 175285
+      }
+    },
+    "ZIC005": {
+      "unique_public_compound_ids": 1,
+      "unique_smiles": 0,
+      "unique_names": 1,
+      "condition_roles": {
+        "compound_treatment": 157
+      }
+    },
+    "ZIC007": {
+      "unique_public_compound_ids": 4,
+      "unique_smiles": 4,
+      "unique_names": 4,
+      "condition_roles": {
+        "compound_treatment": 565
+      }
+    },
+    "ZIC009": {
+      "unique_public_compound_ids": 31,
+      "unique_smiles": 31,
+      "unique_names": 31,
+      "condition_roles": {
+        "compound_treatment": 31107
+      }
+    },
+    "ZIC005-2": {
+      "unique_public_compound_ids": 0,
+      "unique_smiles": 0,
+      "unique_names": 1,
+      "condition_roles": {
+        "capture_only": 7891
+      }
+    }
+  },
+  "cell_lines": {
+    "list": [
+      "HEK293-clone",
+      "A549",
+      "H1650",
+      "HEK293",
+      "THP1",
+      "AEC7"
+    ],
+    "count": 6
+  },
+  "libraries_per_cell_line": {
+    "HEK293-clone": {
+      "libraries": [
+        "ZIC008",
+        "ZEL026-2"
+      ],
+      "count": 2
+    },
+    "A549": {
+      "libraries": [
+        "ZIC008",
+        "ZEL026-2",
+        "ZEL031",
+        "ZEL028-2",
+        "ZIC006",
+        "ZIC004"
+      ],
+      "count": 6
+    },
+    "H1650": {
+      "libraries": [
+        "ZIC008",
+        "ZEL031",
+        "ZEL028-2",
+        "ZEL024",
+        "ZIC003",
+        "ZIC005",
+        "ZIC002",
+        "ZIC001",
+        "ZEL026-2",
+        "ZIC006",
+        "ZIC004",
+        "ZIC007"
+      ],
+      "count": 12
+    },
+    "HEK293": {
+      "libraries": [
+        "ZIC008",
+        "ZEL028-2",
+        "ZEL024",
+        "ZIC002",
+        "ZIC001",
+        "ZIC003"
+      ],
+      "count": 6
+    },
+    "THP1": {
+      "libraries": [
+        "ZEL031",
+        "ZIC004",
+        "ZIC006",
+        "ZIC003",
+        "ZIC002",
+        "ZIC001",
+        "ZIC007",
+        "ZIC005"
+      ],
+      "count": 8
+    },
+    "AEC7": {
+      "libraries": [
+        "ZIC008",
+        "ZEL026-2",
+        "ZIC009",
+        "ZIC005-2"
+      ],
+      "count": 4
+    }
+  },
+  "devices": {
+    "list": [
+      0,
+      1,
+      2,
+      3,
+      4,
+      5,
+      6,
+      7,
+      8,
+      9,
+      10,
+      11,
+      12,
+      13,
+      14,
+      15,
+      16,
+      17,
+      18,
+      19,
+      20,
+      21,
+      22,
+      23,
+      24,
+      25,
+      26,
+      27,
+      28,
+      29,
+      30,
+      31,
+      32,
+      33,
+      34,
+      35,
+      36,
+      37,
+      38,
+      39,
+      40,
+      41,
+      42,
+      43,
+      44,
+      45,
+      46,
+      47,
+      48
+    ],
+    "count": 49
+  },
+  "device_cell_lines": {
+    "0": [
+      "HEK293"
+    ],
+    "1": [
+      "HEK293"
+    ],
+    "2": [
+      "HEK293"
+    ],
+    "3": [
+      "HEK293"
+    ],
+    "4": [
+      "HEK293"
+    ],
+    "5": [
+      "HEK293"
+    ],
+    "6": [
+      "H1650"
+    ],
+    "7": [
+      "H1650"
+    ],
+    "8": [
+      "H1650"
+    ],
+    "9": [
+      "H1650"
+    ],
+    "10": [
+      "THP1"
+    ],
+    "11": [
+      "A549"
+    ],
+    "12": [
+      "THP1"
+    ],
+    "13": [
+      "A549"
+    ],
+    "14": [
+      "A549"
+    ],
+    "15": [
+      "A549"
+    ],
+    "16": [
+      "A549"
+    ],
+    "17": [
+      "A549"
+    ],
+    "18": [
+      "A549"
+    ],
+    "19": [
+      "H1650"
+    ],
+    "20": [
+      "H1650"
+    ],
+    "21": [
+      "A549"
+    ],
+    "22": [
+      "A549"
+    ],
+    "23": [
+      "A549"
+    ],
+    "24": [
+      "H1650"
+    ],
+    "25": [
+      "A549"
+    ],
+    "26": [
+      "H1650"
+    ],
+    "27": [
+      "HEK293"
+    ],
+    "28": [
+      "HEK293"
+    ],
+    "29": [
+      "HEK293-clone"
+    ],
+    "30": [
+      "HEK293-clone"
+    ],
+    "31": [
+      "HEK293"
+    ],
+    "32": [
+      "HEK293"
+    ],
+    "33": [
+      "AEC7"
+    ],
+    "34": [
+      "AEC7"
+    ],
+    "35": [
+      "AEC7"
+    ],
+    "36": [
+      "AEC7"
+    ],
+    "37": [
+      "AEC7"
+    ],
+    "38": [
+      "AEC7"
+    ],
+    "39": [
+      "AEC7"
+    ],
+    "40": [
+      "AEC7"
+    ],
+    "41": [
+      "AEC7"
+    ],
+    "42": [
+      "AEC7"
+    ],
+    "43": [
+      "AEC7"
+    ],
+    "44": [
+      "AEC7"
+    ],
+    "45": [
+      "AEC7"
+    ],
+    "46": [
+      "AEC7"
+    ],
+    "47": [
+      "AEC7"
+    ],
+    "48": [
+      "AEC7"
+    ]
+  },
+  "is_each_device_single_cell_line": true,
+  "device_libraries": {
+    "0": [
+      "ZEL024",
+      "ZIC002",
+      "ZIC001"
+    ],
+    "1": [
+      "ZEL024",
+      "ZIC002",
+      "ZIC001"
+    ],
+    "2": [
+      "ZEL024",
+      "ZIC002",
+      "ZIC001"
+    ],
+    "3": [
+      "ZEL024",
+      "ZIC002",
+      "ZIC001"
+    ],
+    "4": [
+      "ZEL024",
+      "ZIC003",
+      "ZIC002",
+      "ZIC001"
+    ],
+    "5": [
+      "ZEL024",
+      "ZIC003",
+      "ZIC002",
+      "ZIC001"
+    ],
+    "6": [
+      "ZEL024",
+      "ZIC002",
+      "ZIC005",
+      "ZIC001",
+      "ZIC003"
+    ],
+    "7": [
+      "ZEL024",
+      "ZIC003",
+      "ZIC005",
+      "ZIC002",
+      "ZIC001"
+    ],
+    "8": [
+      "ZEL026-2",
+      "ZIC007",
+      "ZIC004",
+      "ZIC006",
+      "ZIC003",
+      "ZIC002",
+      "ZIC001"
+    ],
+    "9": [
+      "ZEL026-2",
+      "ZIC006",
+      "ZIC003",
+      "ZIC004",
+      "ZIC002",
+      "ZIC001",
+      "ZIC007"
+    ],
+    "10": [
+      "ZIC006",
+      "ZEL031",
+      "ZIC007",
+      "ZIC004",
+      "ZIC005",
+      "ZIC002",
+      "ZIC003",
+      "ZIC001"
+    ],
+    "11": [
+      "ZIC006",
+      "ZIC004"
+    ],
+    "12": [
+      "ZEL031",
+      "ZIC004",
+      "ZIC006",
+      "ZIC003",
+      "ZIC002",
+      "ZIC001"
+    ],
+    "13": [
+      "ZIC008",
+      "ZEL031"
+    ],
+    "14": [
+      "ZIC008",
+      "ZEL031"
+    ],
+    "15": [
+      "ZIC008",
+      "ZEL031"
+    ],
+    "16": [
+      "ZIC008",
+      "ZEL031"
+    ],
+    "17": [
+      "ZIC008",
+      "ZEL026-2",
+      "ZIC004"
+    ],
+    "18": [
+      "ZIC008",
+      "ZEL026-2",
+      "ZIC004"
+    ],
+    "19": [
+      "ZIC008",
+      "ZEL031"
+    ],
+    "20": [
+      "ZIC008",
+      "ZEL031"
+    ],
+    "21": [
+      "ZEL026-2",
+      "ZIC008"
+    ],
+    "22": [
+      "ZIC008",
+      "ZEL026-2"
+    ],
+    "23": [
+      "ZIC008",
+      "ZEL028-2"
+    ],
+    "24": [
+      "ZIC008",
+      "ZEL028-2"
+    ],
+    "25": [
+      "ZIC008",
+      "ZEL028-2"
+    ],
+    "26": [
+      "ZIC008",
+      "ZEL028-2"
+    ],
+    "27": [
+      "ZIC008",
+      "ZEL028-2"
+    ],
+    "28": [
+      "ZIC008",
+      "ZEL028-2"
+    ],
+    "29": [
+      "ZIC008",
+      "ZEL026-2"
+    ],
+    "30": [
+      "ZIC008",
+      "ZEL026-2"
+    ],
+    "31": [
+      "ZIC008",
+      "ZEL028-2"
+    ],
+    "32": [
+      "ZIC008",
+      "ZEL028-2"
+    ],
+    "33": [
+      "ZIC008",
+      "ZEL026-2",
+      "ZIC009"
+    ],
+    "34": [
+      "ZEL026-2",
+      "ZIC008",
+      "ZIC009"
+    ],
+    "35": [
+      "ZIC008",
+      "ZEL026-2",
+      "ZIC009"
+    ],
+    "36": [
+      "ZIC008",
+      "ZEL026-2",
+      "ZIC009"
+    ],
+    "37": [
+      "ZIC008",
+      "ZEL026-2",
+      "ZIC009"
+    ],
+    "38": [
+      "ZEL026-2",
+      "ZIC008",
+      "ZIC009"
+    ],
+    "39": [
+      "ZIC008",
+      "ZEL026-2",
+      "ZIC009"
+    ],
+    "40": [
+      "ZIC008",
+      "ZEL026-2",
+      "ZIC009"
+    ],
+    "41": [
+      "ZIC008",
+      "ZIC005-2",
+      "ZIC009"
+    ],
+    "42": [
+      "ZIC008",
+      "ZIC009",
+      "ZIC005-2"
+    ],
+    "43": [
+      "ZIC008",
+      "ZIC005-2",
+      "ZIC009"
+    ],
+    "44": [
+      "ZIC008",
+      "ZIC005-2",
+      "ZIC009"
+    ],
+    "45": [
+      "ZIC008",
+      "ZIC005-2",
+      "ZIC009"
+    ],
+    "46": [
+      "ZIC008",
+      "ZIC005-2",
+      "ZIC009"
+    ],
+    "47": [
+      "ZIC008",
+      "ZIC009",
+      "ZIC005-2"
+    ],
+    "48": [
+      "ZIC008",
+      "ZIC005-2",
+      "ZIC009"
+    ]
+  },
+  "is_each_device_single_library": false,
+  "device_condition_roles": {
+    "0": {
+      "building_block_treatment": 25310,
+      "compound_treatment": 2051
+    },
+    "1": {
+      "building_block_treatment": 20398,
+      "compound_treatment": 1613
+    },
+    "2": {
+      "building_block_treatment": 30307,
+      "compound_treatment": 2599
+    },
+    "3": {
+      "building_block_treatment": 28064,
+      "compound_treatment": 2454
+    },
+    "4": {
+      "building_block_treatment": 26973,
+      "compound_treatment": 3040
+    },
+    "5": {
+      "building_block_treatment": 22688,
+      "compound_treatment": 2578
+    },
+    "6": {
+      "building_block_treatment": 19253,
+      "compound_treatment": 846
+    },
+    "7": {
+      "building_block_treatment": 2292,
+      "compound_treatment": 263
+    },
+    "8": {
+      "capture_only": 10369,
+      "compound_treatment": 2053
+    },
+    "9": {
+      "capture_only": 6717,
+      "compound_treatment": 854
+    },
+    "10": {
+      "building_block_treatment": 2837,
+      "compound_treatment": 911
+    },
+    "11": {
+      "compound_treatment": 257
+    },
+    "12": {
+      "building_block_treatment": 19105,
+      "compound_treatment": 4591
+    },
+    "13": {
+      "compound_treatment": 7771,
+      "building_block_treatment": 5831
+    },
+    "14": {
+      "compound_treatment": 5583,
+      "building_block_treatment": 4295
+    },
+    "15": {
+      "compound_treatment": 11376,
+      "building_block_treatment": 5522
+    },
+    "16": {
+      "compound_treatment": 7041,
+      "building_block_treatment": 5220
+    },
+    "17": {
+      "compound_treatment": 9757,
+      "capture_only": 3918
+    },
+    "18": {
+      "compound_treatment": 8428,
+      "capture_only": 2904
+    },
+    "19": {
+      "compound_treatment": 6283,
+      "building_block_treatment": 107
+    },
+    "20": {
+      "compound_treatment": 13903,
+      "building_block_treatment": 324
+    },
+    "21": {
+      "compound_treatment": 15125,
+      "capture_only": 12714
+    },
+    "22": {
+      "compound_treatment": 11058,
+      "capture_only": 7182
+    },
+    "23": {
+      "building_block_treatment": 20152,
+      "compound_treatment": 3456
+    },
+    "24": {
+      "building_block_treatment": 12056,
+      "compound_treatment": 2122
+    },
+    "25": {
+      "building_block_treatment": 22283,
+      "compound_treatment": 5429
+    },
+    "26": {
+      "building_block_treatment": 14638,
+      "compound_treatment": 4074
+    },
+    "27": {
+      "building_block_treatment": 14494,
+      "compound_treatment": 3505
+    },
+    "28": {
+      "building_block_treatment": 12865,
+      "compound_treatment": 2943
+    },
+    "29": {
+      "compound_treatment": 19951,
+      "capture_only": 7878
+    },
+    "30": {
+      "compound_treatment": 14309,
+      "capture_only": 7074
+    },
+    "31": {
+      "building_block_treatment": 20770,
+      "compound_treatment": 6751
+    },
+    "32": {
+      "building_block_treatment": 17563,
+      "compound_treatment": 5811
+    },
+    "33": {
+      "compound_treatment": 7910,
+      "capture_only": 3588
+    },
+    "34": {
+      "compound_treatment": 7340,
+      "capture_only": 3910
+    },
+    "35": {
+      "compound_treatment": 6075,
+      "capture_only": 3090
+    },
+    "36": {
+      "compound_treatment": 8004,
+      "capture_only": 4107
+    },
+    "37": {
+      "compound_treatment": 9358,
+      "capture_only": 4032
+    },
+    "38": {
+      "compound_treatment": 12360,
+      "capture_only": 5144
+    },
+    "39": {
+      "compound_treatment": 13801,
+      "capture_only": 7391
+    },
+    "40": {
+      "compound_treatment": 10753,
+      "capture_only": 5565
+    },
+    "41": {
+      "compound_treatment": 2587,
+      "capture_only": 342
+    },
+    "42": {
+      "compound_treatment": 3990,
+      "capture_only": 670
+    },
+    "43": {
+      "compound_treatment": 9698,
+      "capture_only": 1839
+    },
+    "44": {
+      "compound_treatment": 8618,
+      "capture_only": 1854
+    },
+    "45": {
+      "compound_treatment": 6209,
+      "capture_only": 1014
+    },
+    "46": {
+      "compound_treatment": 7242,
+      "capture_only": 1016
+    },
+    "47": {
+      "compound_treatment": 5136,
+      "capture_only": 847
+    },
+    "48": {
+      "compound_treatment": 3474,
+      "capture_only": 309
+    }
+  },
+  "no_compound_control_summary": {
+    "devices_with_capture_only": {
+      "list": [
+        8,
+        9,
+        17,
+        18,
+        21,
+        22,
+        29,
+        30,
+        33,
+        34,
+        35,
+        36,
+        37,
+        38,
+        39,
+        40,
+        41,
+        42,
+        43,
+        44,
+        45,
+        46,
+        47,
+        48
+      ],
+      "count": 24
+    },
+    "devices_with_building_block_treatment": {
+      "list": [
+        0,
+        1,
+        2,
+        3,
+        4,
+        5,
+        6,
+        7,
+        10,
+        12,
+        13,
+        14,
+        15,
+        16,
+        19,
+        20,
+        23,
+        24,
+        25,
+        26,
+        27,
+        28,
+        31,
+        32
+      ],
+      "count": 24
+    }
+  }
+};
+    const crosstab = {
+  "ZEL024": {
+    "A549": 0,
+    "AEC7": 0,
+    "H1650": 21545,
+    "HEK293": 153740,
+    "HEK293-clone": 0,
+    "THP1": 0
+  },
+  "ZEL026-2": {
+    "A549": 26718,
+    "AEC7": 36827,
+    "H1650": 17086,
+    "HEK293": 0,
+    "HEK293-clone": 14952,
+    "THP1": 0
+  },
+  "ZEL028-2": {
+    "A549": 42435,
+    "AEC7": 0,
+    "H1650": 26694,
+    "HEK293": 65692,
+    "HEK293-clone": 0,
+    "THP1": 0
+  },
+  "ZEL031": {
+    "A549": 20868,
+    "AEC7": 0,
+    "H1650": 431,
+    "HEK293": 0,
+    "HEK293-clone": 0,
+    "THP1": 21942
+  },
+  "ZIC001": {
+    "A549": 0,
+    "AEC7": 0,
+    "H1650": 1229,
+    "HEK293": 3858,
+    "HEK293-clone": 0,
+    "THP1": 1482
+  },
+  "ZIC002": {
+    "A549": 0,
+    "AEC7": 0,
+    "H1650": 806,
+    "HEK293": 9558,
+    "HEK293-clone": 0,
+    "THP1": 635
+  },
+  "ZIC003": {
+    "A549": 0,
+    "AEC7": 0,
+    "H1650": 378,
+    "HEK293": 919,
+    "HEK293-clone": 0,
+    "THP1": 583
+  },
+  "ZIC004": {
+    "A549": 122,
+    "AEC7": 0,
+    "H1650": 411,
+    "HEK293": 0,
+    "HEK293-clone": 0,
+    "THP1": 1380
+  },
+  "ZIC005": {
+    "A549": 0,
+    "AEC7": 0,
+    "H1650": 109,
+    "HEK293": 0,
+    "HEK293-clone": 0,
+    "THP1": 48
+  },
+  "ZIC005-2": {
+    "A549": 0,
+    "AEC7": 7891,
+    "H1650": 0,
+    "HEK293": 0,
+    "HEK293-clone": 0,
+    "THP1": 0
+  },
+  "ZIC006": {
+    "A549": 207,
+    "AEC7": 0,
+    "H1650": 631,
+    "HEK293": 0,
+    "HEK293-clone": 0,
+    "THP1": 1261
+  },
+  "ZIC007": {
+    "A549": 0,
+    "AEC7": 0,
+    "H1650": 452,
+    "HEK293": 0,
+    "HEK293-clone": 0,
+    "THP1": 113
+  },
+  "ZIC008": {
+    "A549": 84952,
+    "AEC7": 91448,
+    "H1650": 26382,
+    "HEK293": 19010,
+    "HEK293-clone": 34260,
+    "THP1": 0
+  },
+  "ZIC009": {
+    "A549": 0,
+    "AEC7": 31107,
+    "H1650": 0,
+    "HEK293": 0,
+    "HEK293-clone": 0,
+    "THP1": 0
+  }
+};
+
+    function switchTab(tabId) {
+        document.querySelectorAll('.tab-content').forEach(el => el.classList.remove('active'));
+        document.querySelectorAll('.tab-btn').forEach(el => el.classList.remove('active'));
+        
+        document.getElementById(tabId).classList.add('active');
+        // Find corresponding button
+        const btnText = tabId.replace('tab-', '').toLowerCase();
+        document.querySelectorAll('.tab-btn').forEach(btn => {
+            if (btn.innerText.toLowerCase() === btnText || (btnText === 'matrix' && btn.innerText.toLowerCase() === 'screen matrix')) {
+                btn.classList.add('active');
+            }
+        });
+    }
+
+    // Initialize charts
+    window.onload = function() {
+        // Cell Line chart
+        const ctxCell = document.getElementById('cellLineChart').getContext('2d');
+        new Chart(ctxCell, {
+            type: 'bar',
+            data: {
+                labels: ['HEK293', 'A549', 'AEC7', 'H1650', 'HEK293-clone', 'THP1'],
+                datasets: [{
+                    label: 'Nanowells Profiled',
+                    data: [252777, 175302, 167273, 96154, 49212, 27444],
+                    backgroundColor: ['#8b5cf6', '#06b6d4', '#ec4899', '#f97316', '#e5e7eb', '#10b981'],
+                    borderColor: 'rgba(255, 255, 255, 0.1)',
+                    borderWidth: 1,
+                    borderRadius: 8
+                }]
+            },
+            options: {
+                responsive: true,
+                maintainAspectRatio: false,
+                plugins: {
+                    legend: { display: false }
+                },
+                scales: {
+                    y: {
+                        grid: { color: 'rgba(255, 255, 255, 0.05)' },
+                        ticks: { color: '#9ca3af', font: { family: 'Outfit' } }
+                    },
+                    x: {
+                        grid: { display: false },
+                        ticks: { color: '#9ca3af', font: { family: 'Outfit', weight: 'bold' } }
+                    }
+                }
+            }
+        });
+
+        // Role split chart
+        const ctxRole = document.getElementById('roleChart').getContext('2d');
+        new Chart(ctxRole, {
+            type: 'doughnut',
+            data: {
+                labels: ['OBOC Combinatorial Libraries', 'Named Control Compounds', 'No-Compound Controls'],
+                datasets: [{
+                    data: [353347, 311341, 103474],
+                    backgroundColor: ['#8b5cf6', '#06b6d4', '#f43f5e'],
+                    borderWidth: 0,
+                    hoverOffset: 10
+                }]
+            },
+            options: {
+                responsive: true,
+                maintainAspectRatio: false,
+                plugins: {
+                    legend: {
+                        position: 'bottom',
+                        labels: {
+                            color: '#e5e7eb',
+                            font: { family: 'Outfit', size: 12 },
+                            padding: 15
+                        }
+                    }
+                },
+                cutout: '65%'
+            }
+        });
+
+        buildHeatmap();
+        buildDeviceTable();
+        buildLibraryCards();
+    };
+
+    // Build the matrix heatmap
+    function buildHeatmap() {
+        const grid = document.getElementById('heatmapGrid');
+        const cellLines = ['A549', 'AEC7', 'H1650', 'HEK293', 'HEK293-clone', 'THP1'];
+        
+        // Header
+        grid.appendChild(createDiv('heatmap-header-cell', ''));
+        cellLines.forEach(cell => {
+            grid.appendChild(createDiv('heatmap-header-cell', cell));
+        });
+
+        // Grid rows
+        Object.keys(crosstab).sort().forEach(lib => {
+            // Label
+            grid.appendChild(createDiv('heatmap-label-cell', lib));
+            
+            // Values
+            cellLines.forEach(cell => {
+                const val = crosstab[lib][cell] || 0;
+                const cellEl = document.createElement('div');
+                cellEl.className = 'heatmap-cell';
+                
+                // Color scale
+                let bg = 'rgba(139, 92, 246, 0.03)';
+                let color = 'rgba(255, 255, 255, 0.15)';
+                let border = '1px solid var(--border-color)';
+                
+                if (val > 0) {
+                    border = 'none';
+                    if (val < 2000) {
+                        bg = 'rgba(139, 92, 246, 0.25)';
+                        color = '#d8b4fe';
+                    } else if (val < 25000) {
+                        bg = 'rgba(139, 92, 246, 0.55)';
+                        color = '#e9d5ff';
+                    } else {
+                        bg = 'rgba(139, 92, 246, 0.85)';
+                        color = '#ffffff';
+                    }
+                }
+                
+                cellEl.style.background = bg;
+                cellEl.style.color = color;
+                cellEl.style.border = border;
+                
+                const valSpan = document.createElement('span');
+                valSpan.className = 'heatmap-cell-value';
+                valSpan.innerText = val > 0 ? val.toLocaleString() : '-';
+                cellEl.appendChild(valSpan);
+                
+                if (val > 0) {
+                    const pctSpan = document.createElement('span');
+                    pctSpan.className = 'heatmap-cell-pct';
+                    pctSpan.innerText = ((val / 768162) * 100).toFixed(1) + '%';
+                    cellEl.appendChild(pctSpan);
+                }
+                
+                grid.appendChild(cellEl);
+            });
+        });
+    }
+
+    function createDiv(className, text) {
+        const el = document.createElement('div');
+        el.className = className;
+        el.innerText = text;
+        return el;
+    }
+
+    // Build the Device details table
+    function buildDeviceTable() {
+        const tbody = document.getElementById('deviceTableBody');
+        tbody.innerHTML = '';
+
+        const devices = results.devices.list;
+        devices.forEach(dev => {
+            const devStr = dev.toString();
+            const master_c = results.device_cell_lines[devStr][0];
+
+            const libs = results.device_libraries[devStr];
+            const libsBadges = libs.map(lib => {
+                let badgeClass = 'badge-purple';
+                if (lib === 'ZEL026-2') badgeClass = 'badge-rose';
+                else if (lib === 'ZIC005' || lib === 'ZIC005-2') badgeClass = 'badge-blue';
+                else if (lib.startsWith('ZEL')) badgeClass = 'badge-cyan';
+                return `<span class="badge ${badgeClass}" style="margin: 2px;">${lib}</span>`;
+            }).join(' ');
+
+            const roles = results.device_condition_roles[devStr];
+            const cellCount = Object.values(roles).reduce((a, b) => a + b, 0);
+            
+            const rolesSplit = Object.keys(roles).map(role => {
+                let colorClass = 'text-muted';
+                let displayName = role;
+                if (role === 'building_block_treatment') {
+                    displayName = 'OBOC Library';
+                    colorClass = 'color: #a78bfa;';
+                } else if (role === 'compound_treatment') {
+                    // Check if device contains ZIC005 (water control)
+                    if (libs.includes('ZIC005')) {
+                        displayName = 'Named Controls (+Water)';
+                    } else {
+                        displayName = 'Named Controls';
+                    }
+                    colorClass = 'color: #22d3ee;';
+                } else if (role === 'capture_only') {
+                    displayName = 'No-Compound Control';
+                    colorClass = 'color: #f43f5e;';
+                }
+                return `<span style="font-size: 0.8rem; font-family: var(--font-mono); ${colorClass} font-weight:500;">${displayName}: ${roles[role].toLocaleString()}</span>`;
+            }).join('<br>');
+
+            const tr = document.createElement('tr');
+            tr.setAttribute('data-device-id', devStr);
+            tr.setAttribute('data-cell-line-master', master_c);
+            tr.setAttribute('data-libraries', libs.join(','));
+
+            tr.innerHTML = `
+                <td style="font-family: var(--font-mono); font-weight:bold; padding-left: 1.5rem;">#${dev}</td>
+                <td>${master_c}</td>
+                <td>${libsBadges}</td>
+                <td style="font-family: var(--font-mono); font-weight: 500;">${cellCount.toLocaleString()}</td>
+                <td>${rolesSplit}</td>
+            `;
+            tbody.appendChild(tr);
+        });
+    }
+
+    // Filter devices in table
+    function filterDevices() {
+        const q = document.getElementById('deviceSearch').value.toLowerCase();
+        const cellFilter = document.getElementById('cellLineFilter').value;
+        
+        const rows = document.querySelectorAll('#deviceTableBody tr');
+        rows.forEach(row => {
+            const devId = row.getAttribute('data-device-id');
+            const masterCell = row.getAttribute('data-cell-line-master');
+            const libs = row.getAttribute('data-libraries').toLowerCase();
+            
+            const matchQuery = devId.includes(q) || masterCell.toLowerCase().includes(q) || libs.includes(q);
+            const matchCell = !cellFilter || masterCell === cellFilter;
+            
+            if (matchQuery && matchCell) {
+                row.style.display = '';
+            } else {
+                row.style.display = 'none';
+            }
+        });
+    }
+
+    // Build the chemical libraries cards
+    function buildLibraryCards() {
+        const grid = document.getElementById('libGrid');
+        grid.innerHTML = '';
+        
+        Object.keys(results.compounds_per_library).sort().forEach(lib => {
+            const details = results.compounds_per_library[lib];
+            const card = document.createElement('div');
+            card.className = 'lib-card';
+            
+            // Sum of cells
+            const sumCells = Object.values(details.condition_roles).reduce((a,b)=>a+b, 0);
+            
+            // Category label
+            let categoryLabel = '';
+            let badgeClass = 'badge-purple';
+            if (lib === 'ZEL026-2') {
+                categoryLabel = 'No-Compound Control Beads';
+                badgeClass = 'badge-rose';
+            } else if (lib === 'ZIC005' || lib === 'ZIC005-2') {
+                categoryLabel = lib === 'ZIC005' ? 'No-Compound Control (Water)' : 'No-Compound Control';
+                badgeClass = 'badge-blue';
+            } else if (lib.startsWith('ZEL')) {
+                categoryLabel = 'OBOC Combinatorial Library';
+                badgeClass = 'badge-cyan';
+            } else if (lib.startsWith('ZIC')) {
+                categoryLabel = 'Named Control Compounds';
+                badgeClass = 'badge-purple';
+            }
+            
+            let roleBadge = `<span class="badge ${badgeClass}">${categoryLabel}</span>`;
+
+            card.innerHTML = `
+                <div>
+                    <div class="lib-name">
+                        <span>${lib}</span>
+                        ${roleBadge}
+                    </div>
+                    <div style="margin-top: 1rem;">
+                        <div class="lib-details-row">
+                            <span class="lib-details-label">Unique Compound IDs</span>
+                            <span class="lib-details-val">${details.unique_public_compound_ids.toLocaleString()}</span>
+                        </div>
+                        <div class="lib-details-row">
+                            <span class="lib-details-label">Unique SMILES Structure Maps</span>
+                            <span class="lib-details-val">${details.unique_smiles.toLocaleString()}</span>
+                        </div>
+                        <div class="lib-details-row">
+                            <span class="lib-details-label">Unique Names</span>
+                            <span class="lib-details-val">${details.unique_names.toLocaleString()}</span>
+                        </div>
+                        <div class="lib-details-row">
+                            <span class="lib-details-label">Total Profiled Nanowells</span>
+                            <span class="lib-details-val" style="color: #fff;">${sumCells.toLocaleString()}</span>
+                        </div>
+                    </div>
+                </div>
+            `;
+            grid.appendChild(card);
+        });
+    }
+</script>
+</body>
+</html>