import numpy as np from ..idw.idw import IDW from ..utils.distance import haversine, euclidean class SpatialFeatures: """Generate spatial features from N-closest locations Args: n_closest : 'N' closest locations idw : To use idw output as one of the feature idw_exponent : Exponent to be used in idw (if idw is False, ignore) coordinate_type : 'Eucleadian' or 'Geographic' (if idw is False, ignore) resolution : 'low', 'standard' or 'high' (if idw is False, ignore) """ def __init__( self, n_closest: int = 5, idw: bool = True, idw_exponent: float = 2, coordinate_type: str = "Euclidean", resolution: str = "standard", ) -> None: self.n_closest = n_closest self.idw = idw self.idw_exponent = idw_exponent self.coordinate_type = coordinate_type self.resolution = resolution if self.coordinate_type == "Eucledian": self.distance = euclidean elif self.coordinate_type == "Geographic": self.distance = haversine else: raise NotImplementedError( '"' + self.coordinate_type + '" is not implemented yet or invalid' ) def fit(self, X: np.ndarray, y: np.ndarray) -> object: """[summary] Args: X : Reference X data (longitude, latitude, time, ...) y : Reference y data Returns: self """ self.X = X self.y = y def transform(self, X: np.ndarray) -> np.ndarray: """Transform features Args: X (np.ndarray): (longitude, latitude, time, ...) Raises: Exception: If not already fitted Returns: np.ndarray: Transformed features """ try: self.X except AttributeError: raise Exception("Not fitted yet. first call the 'fit' method") Xflag = False if np.all(X == self.X): Xflag = True F = ( np.empty( (X.shape[0], (X.shape[1] - 3) + self.n_closest * 2 + self.idw) ) * np.nan ) for t in np.unique(X[:, 2]): # Iterating over time mask = X[:, 2] == t # rows with time t trn_mask = self.X[:, 2] == t X_local = X[mask] self_X_local = self.X[trn_mask] lonlat = X_local[:, :2] # locs self_lonlat = self_X_local[:, :2] # Reference locs dst = self.distance(lonlat, self_lonlat) if Xflag: idx = dst.argsort()[:, 1 : self.n_closest + 1] else: idx = dst.argsort()[:, : self.n_closest] # Feature set 1: closest distances f1 = dst[np.arange(lonlat.shape[0])[:, None], idx] self_y_local = self.y[trn_mask] # Train obs ymat = self_y_local[:, None].repeat(lonlat.shape[0], 1).T # Feature set 2: closest observations f2 = ymat[np.arange(lonlat.shape[0])[:, None], idx] if self.idw: def for_each_row(i): i = i[0] model = IDW(exponent=self.idw_exponent) model.resolution = self.resolution model.coordinate_type = self.coordinate_type model.fit(self_lonlat[idx[i]], self_y_local[idx[i]]) return model.predict(lonlat[i][None, :]) # Feature set 3: IDW observation f3 = np.apply_along_axis( for_each_row, axis=1, arr=np.arange(lonlat.shape[0]).reshape(-1, 1), ) F[mask] = np.concatenate([X_local[:, 3:], f1, f2, f3], axis=1) else: F[mask] = np.concatenate([X_local[:, 3:], f1, f2], axis=1) return F def fit_transform(self, X: np.ndarray, y: np.ndarray): self.fit(X, y) return self.transform(X)