--- license: apache-2.0 pretty_name: Hippolv ADMET & Solubility Dataset size_categories: - 1K

๐Ÿ’Š Hippolv

A highly curated, instruction-tuning dataset for teaching AI how drugs behave in the human body (ADMET & Solubility).

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## ๐Ÿ’ก Overview Welcome to **Hippolv**, the third specialized dataset curated by [ZemResearch](https://huggingface.co/ZemResearch). While our previous datasets focused on general molecular structures and toxicology, Hippolv is engineered to bridge the gap between pure chemistry and clinical pharmacology. This dataset focuses on **ADMET** (Absorption, Distribution, Metabolism, Excretion, and Toxicity) and aqueous solubility. We sourced raw, high-quality clinical experimental data from the prestigious **OpenADMET Challenges** (`expansionrx` and `pxr-challenge`), and transformed them into a clean, instruction-following format. It's the perfect fuel to fine-tune your Chemical LLMs into expert pharmaceutical assistants. ## ๐Ÿงผ The "Deep Clean" Sterilization Process High-quality models require high-quality data. We didn't just scrape this data; we rigorously sterilized it using a strict RDKit pipeline: 1. **Chemical Validation:** Every molecule was passed through RDKit. If the SMILES string was broken or chemically invalid, it was instantly dropped. 2. **Canonicalization:** All valid molecules were converted into their standard **Canonical SMILES** (with isomeric properties preserved) to ensure structural consistency. 3. **Deduplication:** We aggressively dropped duplicates based on their true chemical structure, not just string similarity. We also removed any rows with missing ADMET values. 4. **Result:** A hyper-sterilized dataset of pure, instruction-ready ADMET data, free from data leakage and benchmark conflicts. ## ๐Ÿ“ฆ Why is the file so tiny? If you check the files, you might be surprised to see that thousands of rows of pharmaceutical data fit into a file of around **1 MB**. This is the magic of the **Apache Parquet** format paired with Google's **Snappy compression**. Since SMILES strings and repetitive text formats compress incredibly well, you get a feather-light file to download. Once loaded into your Python environment, it instantly decompresses to its full size, saving your bandwidth and keeping your GPU data-loading ultra-fast! ## ๐Ÿ’ป How to Use (Quick Start) You don't need to manually download anything. Just use the `datasets` library by Hugging Face to load it directly into your workflow: ```python from datasets import load_dataset # Load the dataset dataset = load_dataset("ZemResearch/Hippolv") # Check the total rows print(f"Total verified ADMET data: {len(dataset['train'])}") # Look at the first data point print(dataset['train'][0]) ``` ## ๐Ÿ“ Data Structure Hippolv is formatted for standard Instruction-Tuning (Alpaca/ChatML style). Each row contains three columns: * `instruction`: The prompt asking the AI to analyze the molecule's properties. * `input`: The verified Canonical SMILES string of the molecule. * `output`: A structured narrative detailing the compound's ADMET and solubility metrics. ### Example Row: ```json { "instruction": "Analyze the aqueous solubility and ADMET profile for the following chemical compound.", "input": "CC(=O)Nc1ccc(O)cc1", "output": "ADMET Metrics:\n- LogD: 0.46\n- Kinetic Solubility (KSOL): High\n- HLM CLint: 12.5\n- Caco-2 Permeability: Good" } ``` *(Note: The example output reflects the combined narrative format generated during our preprocessing pipeline).* ## ๐Ÿค Citation & Collaboration Created with โค๏ธ by [ZemResearch](https://huggingface.co/ZemResearch). If you use Hippolv for your academic research, drug discovery pipelines, or to train your own AI models, we'd love to hear about it! Feel free to open a discussion in the community tab.