File size: 9,312 Bytes
acd9628 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 | AgroNT Evaluation Task:
- chromatin_access_MH63_agront
- chromatin_access_ZS97_agront
- poly_a_japonica_agront
- poly_a_indica_agront
- bulk_gene_exp_agront
Short-sequence Task:
- chromatin_access_512
- Epigenetic_Marks_Prediction-Histone
- smallRNA
- splice_sites_labels
- RiceVar_512
- enhancer_strength
Long-sequence Task:
- enhancer_regions
- lncRNA
- rice_nlr
- RiceVar_6k
- RiceVar_8k
Single-nucleotide Task:
- CDS_multilabel
- bulk_single_base_Callus
Sweep Region Identification Task:
- sweep_region_psr
- sweep_region_sor
- sweep_region_8k
- sweep_region_32k
- sweep_region_100k
Varieties Classification Task:
- varieties_classification_8k
- varieties_classification_32k
- varieties_classification_128k
dataset_feature:
chromatin_access_MH63_agront:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: labels
data_split: ['train', 'test','eval']
sample_num: 100000
min_length: 1000
max_length: 1000
dataset_ratio: [0.8, 0.1, 0.1]
chromatin_access_ZS97_agront:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: labels
data_split: ['train', 'test','eval']
sample_num: 100000
min_length: 1000
max_length: 1000
dataset_ratio: [0.8, 0.1, 0.1]
poly_a_japonica_agront:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: classification
data_split: ['train', 'test']
sample_num: 140853
min_length: 400
max_length: 400
dataset_ratio: [0.86, 0.14]
label_train_counter: [(0, 80414), (1, 40207)]
label_test_counter: [(0, 13488), (1, 6744)]
poly_a_indica_agront:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: classification
data_split: ['train', 'test']
sample_num: 114915
min_length: 400
max_length: 400
dataset_ratio: [0.85, 0.15]
label_train_counter: [(0, 65426), (1, 32713)]
label_test_counter: [(0, 11184), (1, 5592)]
bulk_gene_exp_agront:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: regression
data_split: ['train', 'test','eval']
sample_num: 38648
min_length: 6000
max_length: 6000
dataset_ratio: [0.8, 0.1, 0.1]
chromatin_access_512:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: labels
data_split: ['train', 'test','eval']
sample_num: 9991
min_length: 511
max_length: 511
dataset_ratio: [0.8, 0.1, 0.1]
Epigenetic_Marks_Prediction-Histone:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: labels
data_split: ['train', 'test', 'eval']
sample_num: 100000
min_length: 708
max_length: 1024
dataset_ratio: [0.80, 0.10, 0.10]
smallRNA:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: classification
data_split: ['train', 'test', 'eval']
sample_num: 189654
min_length: 16
max_length: 366
dataset_ratio: [0.80, 0.10, 0.10]
label_train_counter: [(0, 79942), (1, 71780)]
label_test_counter: [(0, 10085), (1, 8880)]
label_eval_counter: [(0, 9973), (1, 8993)]
splice_sites_labels:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: classification
data_split: ['train', 'test', 'eval']
sample_num: 100000
min_length: 399
max_length: 399
dataset_ratio: [0.8, 0.1, 0.1]
label_train_counter: [(0, 72720), (1, 13788), (2, 13492)]
label_test_counter: [(0, 6652), (1, 1728), (2, 1620)]
label_eval_counter: [(0, 6603), (1, 1727), (2, 1670)]
RiceVar_512:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: classification
data_split: ['train', 'test']
sample_num: 14979
min_length: 512
max_length: 512
dataset_ratio: [0.90, 0.10]
label_train_counter: [(0, 11667), (1, 1813)]
label_test_counter: [(0, 1312), (1, 187)]
enhancer_strength:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: regression
data_split: ['train', 'test', 'eval']
sample_num: 12539
min_length: 700
max_length: 700
dataset_ratio: [0.8, 0.1, 0.1]
enhancer_regions:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: classification
data_split: ['train', 'test']
sample_num: 10822
min_length: 367
max_length: 5803
dataset_ratio: [0.71, 0.29]
label_train_counter: [(0, 3833), (1, 3833)]
label_test_counter: [(0, 1578), (1, 1578)]
lncRNA:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: classification
data_split: ['train', 'test', 'eval']
sample_num: 3238
min_length: 201
max_length: 6000
dataset_ratio: [0.80, 0.10, 0.10]
label_train_counter: [(0, 1643), (1, 947)]
label_test_counter: [(0, 201), (1, 124)]
label_eval_counter: [(0, 208), (1, 115)]
rice_nlr:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: classification
data_split: ['train', 'test','eval']
sample_num: 22114
min_length: 156
max_length: 6000
dataset_ratio: [0.8, 0.1, 0.1]
label_train_counter: [(0, 12974), (1, 4717)]
label_test_counter: [(0, 1630), (1, 582)]
label_eval_counter: [(0, 1616), (1, 595)]
RiceVar_6k:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: classification
data_split: ['train', 'test']
sample_num: 19979
min_length: 6000
max_length: 6000
dataset_ratio: [0.90, 0.10]
label_train_counter: [(0, 16209), (1, 1773)]
label_test_counter: [(0, 1773), (1, 224)]
RiceVar_8k:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: classification
data_split: ['train', 'test']
sample_num: 14955
min_length: 8192
max_length: 8192
dataset_ratio: [0.90, 0.10]
label_train_counter: [(0, 11658), (1, 1777)]
label_test_counter: [(0, 1300), (1, 220)]
CDS_multilabel:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: labels
data_split: ['train', 'test']
sample_num: 40396
min_length: 512
max_length: 512
dataset_ratio: [0.62, 0.38]
bulk_single_base_Callus:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: regression
data_split: ['train', 'test','eval']
sample_num: 123989
min_length: 6000
max_length: 6000
dataset_ratio: [0.8, 0.1, 0.1]
sweep_region_psr:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: classification
data_split: ['train', 'test', 'eval']
sample_num: 57836
min_length: 6000
max_length: 6000
dataset_ratio: [0.8, 0.1, 0.1]
label_train_counter: [(0, 30776), (1, 15492)]
label_test_counter: [(0, 3920), (1, 1865)]
label_eval_counter: [(0, 3858), (1, 1925)]
sweep_region_sor:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: classification
data_split: ['train', 'test', 'eval']
sample_num: 48620
min_length: 6000
max_length: 6000
dataset_ratio: [0.8, 0.1, 0.1]
label_train_counter: [(0, 25892), (1, 13004)]
label_test_counter: [(0, 3271), (1, 1591)]
label_eval_counter: [(0, 3249), (1, 1613)]
sweep_region_8k:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: classification
data_split: ['train', 'test']
sample_num: 21579
min_length: 8000
max_length: 8000
dataset_ratio: [0.8, 0.1, 0.1]
label_train_counter: [(0, 11498), (1, 5765)]
label_test_counter: [(0, 1413), (1, 744)]
label_eval_counter: [(0, 1475), (1, 684)]
sweep_region_32k:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: classification
data_split: ['train', 'test']
sample_num: 9840
min_length: 32000
max_length: 32000
dataset_ratio: [0.8, 0.1, 0.1]
label_train_counter: [(0, 5262), (1, 2610)]
label_test_counter: [(0, 656), (1, 328)]
label_eval_counter: [(0, 642), (1, 342)]
sweep_region_100k:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: classification
data_split: ['train', 'test']
sample_num: 7200
min_length: 100000
max_length: 100000
dataset_ratio: [0.8, 0.1, 0.1]
label_train_counter: [(0, 3859), (1, 1901)]
label_test_counter: [(0, 472), (1, 248)]
label_eval_counter: [(0, 469), (1, 251)]
varieties_classification_8k:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: labels
data_split: ['train', 'test','eval']
sample_num: 300013
min_length: 8000
max_length: 8000
dataset_ratio: [0.8, 0.1, 0.1]
varieties_classification_32k:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: labels
data_split: ['train', 'test','eval']
sample_num: 149906
min_length: 32000
max_length: 32000
dataset_ratio: [0.8, 0.1, 0.1]
varieties_classification_128k:
seq_for_item: 1
seq_key: sequence
label_key: label
eval_task: labels
data_split: ['train', 'test','eval']
sample_num: 149474
min_length: 128000
max_length: 128000
dataset_ratio: [0.8, 0.1, 0.1]
|