diff --git a/baselines/adapt/bayzid-system-2/results.csv b/baselines/adapt/bayzid-system-2/results.csv index f36fa28f9325fb708cd03667ebff67af614bb372..a2709495c33fb2cad62df5b941f15f8a152e0b71 100644 --- a/baselines/adapt/bayzid-system-2/results.csv +++ b/baselines/adapt/bayzid-system-2/results.csv @@ -55,3 +55,81 @@ mitochondria,kasthuri-pp,mtda@e10,10.0,1,10,0.8179366117529392,0.782983836786532 mitochondria,kasthuri-pp,mtda,10.0,1,15,0.8162848523049216,0.7803199444659836,0.8476743698092118,0.9134782854340804,0.0269804946588852,0.9494326526210303,0.9041470636584762,0.030688736821287987,2614.9,13.49 mitochondria,lucchi-pp,mtda@e10,10.0,1,10,0.8212021255222612,0.7718594224240988,0.8849639862227155,0.8619830979517811,0.0676814379109171,0.8940821940170339,0.8148660608357368,0.07669976978836533,1731.2,10.14 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b/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mldb_e15_b0_s2/log.txt @@ -0,0 +1,17 @@ +[14:18:30][ 0s] START mldb target=katz-lab-berghia-connective task=membrane budget=0% (0/636 labeled) seed=2 epochs=15 x 80 steps | sources (1): octopus-vulgaris-vertical-lobe-sfltract | val 10 test 36 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[14:19:04][ 35s] epoch 1/15 loss 0.3227 seg_src 0.3164 dom 0.2572 seg_tgt 0.0000 grl 0.05 +[14:19:37][ 67s] epoch 2/15 loss 0.2422 seg_src 0.2124 dom 0.2730 seg_tgt 0.0000 grl 0.34 +[14:20:09][ 100s] epoch 3/15 loss 0.2535 seg_src 0.1803 dom 0.1964 seg_tgt 0.0000 grl 0.61 +[14:20:42][ 133s] epoch 4/15 loss 0.2974 seg_src 0.1723 dom 0.1636 seg_tgt 0.0000 grl 0.79 +[14:21:15][ 166s] epoch 5/15 loss 0.2839 seg_src 0.1396 dom 0.1458 seg_tgt 0.0000 grl 0.89 val_dice 0.5050 +[14:21:48][ 199s] epoch 6/15 loss 0.2834 seg_src 0.1359 dom 0.1475 seg_tgt 0.0000 grl 0.95 +[14:22:21][ 231s] epoch 7/15 loss 0.2550 seg_src 0.1235 dom 0.1315 seg_tgt 0.0000 grl 0.97 +[14:22:53][ 264s] epoch 8/15 loss 0.2370 seg_src 0.1119 dom 0.1251 seg_tgt 0.0000 grl 0.99 +[14:23:26][ 297s] epoch 9/15 loss 0.2207 seg_src 0.1028 dom 0.1179 seg_tgt 0.0000 grl 0.99 +[14:24:00][ 330s] epoch 10/15 loss 0.2099 seg_src 0.0941 dom 0.1158 seg_tgt 0.0000 grl 1.00 val_dice 0.4378 | TEST patch_dice 0.3935 image_dice 0.3175 +[14:24:32][ 363s] epoch 11/15 loss 0.2093 seg_src 0.0953 dom 0.1140 seg_tgt 0.0000 grl 1.00 +[14:25:05][ 396s] epoch 12/15 loss 0.2198 seg_src 0.0962 dom 0.1236 seg_tgt 0.0000 grl 1.00 +[14:25:38][ 428s] epoch 13/15 loss 0.2080 seg_src 0.0916 dom 0.1164 seg_tgt 0.0000 grl 1.00 +[14:26:10][ 461s] epoch 14/15 loss 0.1970 seg_src 0.0841 dom 0.1129 seg_tgt 0.0000 grl 1.00 +[14:26:44][ 494s] epoch 15/15 loss 0.1915 seg_src 0.0785 dom 0.1130 seg_tgt 0.0000 grl 1.00 val_dice 0.4812 | TEST patch_dice 0.3846 image_dice 0.2930 +[14:26:44][ 495s] DONE test patch_dice 0.3846 image_dice 0.2930 patch_vi 0.7371 | cyclegan 0.0 min, train 8.2 min diff --git a/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mldb_e15_b0_s2/result.json b/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mldb_e15_b0_s2/result.json new file mode 100644 index 0000000000000000000000000000000000000000..9e753dc2cb616a68c38cc76aa9c0171863f0cfe9 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mldb_e15_b0_s2/result.json @@ -0,0 +1,249 @@ +{ + "task": "membrane", + "target": "katz-lab-berghia-connective", + "variant": "mldb", + "budget": 0.0, + "seed": 2, + "epochs": 15, + "steps_per_epoch": 80, + "labeled_patches": 0, + "train_pool": 636, + "sources": [ + "octopus-vulgaris-vertical-lobe-sfltract" + ], + "args": { + "macs_repo": "/mnt/sdc1/connectomics/MACS-2", + "method": "mldb", + "source": "octopus-vulgaris-vertical-lobe-sfltract", + "task": "membrane", + "target": "katz-lab-berghia-connective", + "budget": 0.0, + "seed": 2, + 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a/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mldb_e15_b0_s3/log.txt b/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mldb_e15_b0_s3/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..b67461dc0fe7b15e63a70f028453f19eabfc69ae --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mldb_e15_b0_s3/log.txt @@ -0,0 +1,17 @@ +[01:53:34][ 0s] START mldb target=katz-lab-berghia-connective task=membrane budget=0% (0/636 labeled) seed=3 epochs=15 x 80 steps | sources (1): octopus-vulgaris-vertical-lobe-sfltract | val 10 test 36 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[01:54:18][ 44s] epoch 1/15 loss 0.4454 seg_src 0.4406 dom 0.1949 seg_tgt 0.0000 grl 0.05 +[01:54:53][ 79s] epoch 2/15 loss 0.3434 seg_src 0.3174 dom 0.2314 seg_tgt 0.0000 grl 0.34 +[01:55:28][ 115s] epoch 3/15 loss 0.3006 seg_src 0.2291 dom 0.1941 seg_tgt 0.0000 grl 0.61 +[01:56:04][ 151s] epoch 4/15 loss 0.3252 seg_src 0.2075 dom 0.1540 seg_tgt 0.0000 grl 0.79 +[01:56:42][ 188s] epoch 5/15 loss 0.3139 seg_src 0.1761 dom 0.1392 seg_tgt 0.0000 grl 0.89 val_dice 0.3011 +[01:57:19][ 226s] epoch 6/15 loss 0.2789 seg_src 0.1472 dom 0.1317 seg_tgt 0.0000 grl 0.95 +[01:57:54][ 261s] epoch 7/15 loss 0.2743 seg_src 0.1438 dom 0.1305 seg_tgt 0.0000 grl 0.97 +[01:58:30][ 296s] epoch 8/15 loss 0.2584 seg_src 0.1296 dom 0.1288 seg_tgt 0.0000 grl 0.99 +[01:59:06][ 332s] epoch 9/15 loss 0.2531 seg_src 0.1261 dom 0.1271 seg_tgt 0.0000 grl 0.99 +[01:59:45][ 372s] epoch 10/15 loss 0.2444 seg_src 0.1186 dom 0.1258 seg_tgt 0.0000 grl 1.00 val_dice 0.5118 | TEST patch_dice 0.3563 image_dice 0.2738 +[02:00:20][ 407s] epoch 11/15 loss 0.2354 seg_src 0.1086 dom 0.1268 seg_tgt 0.0000 grl 1.00 +[02:00:58][ 445s] epoch 12/15 loss 0.2168 seg_src 0.0930 dom 0.1239 seg_tgt 0.0000 grl 1.00 +[02:01:33][ 480s] epoch 13/15 loss 0.2125 seg_src 0.0924 dom 0.1201 seg_tgt 0.0000 grl 1.00 +[02:02:09][ 516s] epoch 14/15 loss 0.2170 seg_src 0.1013 dom 0.1157 seg_tgt 0.0000 grl 1.00 +[02:02:49][ 556s] epoch 15/15 loss 0.2008 seg_src 0.0890 dom 0.1118 seg_tgt 0.0000 grl 1.00 val_dice 0.4904 | TEST patch_dice 0.4604 image_dice 0.4543 +[02:02:50][ 556s] DONE test patch_dice 0.4604 image_dice 0.4543 patch_vi 0.8778 | cyclegan 0.0 min, train 9.2 min diff --git a/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mldb_e15_b0_s3/result.json b/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mldb_e15_b0_s3/result.json new file mode 100644 index 0000000000000000000000000000000000000000..a35f1b2771827d9e08703748aac6fd5425dd931d --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mldb_e15_b0_s3/result.json @@ -0,0 +1,249 @@ +{ + "task": "membrane", + "target": "katz-lab-berghia-connective", + "variant": "mldb", + "budget": 0.0, + "seed": 3, + "epochs": 15, + "steps_per_epoch": 80, + 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"data_access": "sources: labeled train patches; target: unlabeled train pool + random upfront budget of train labels; val: logged only (no selection, final model); test: evaluation only", + "gpu": "NVIDIA GeForce RTX 3070", + "torch": "2.5.1+cu118" +} \ No newline at end of file diff --git a/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mtda_e15_b0_s2/log.txt b/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mtda_e15_b0_s2/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..8f0749176e69693580b5f1b4ff40dfeb31f2230c --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mtda_e15_b0_s2/log.txt @@ -0,0 +1,17 @@ +[14:12:30][ 0s] START mtda target=katz-lab-berghia-connective task=membrane budget=0% (0/636 labeled) seed=2 epochs=15 x 80 steps | sources (1): octopus-vulgaris-vertical-lobe-sfltract | val 10 test 36 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[14:12:55][ 25s] epoch 1/15 loss 0.2750 seg_src 0.2722 dom 0.1092 seg_tgt 0.0000 grl 0.05 +[14:13:19][ 49s] epoch 2/15 loss 0.2061 seg_src 0.1869 dom 0.1659 seg_tgt 0.0000 grl 0.34 +[14:13:42][ 72s] epoch 3/15 loss 0.1931 seg_src 0.1633 dom 0.0843 seg_tgt 0.0000 grl 0.61 +[14:14:06][ 95s] epoch 4/15 loss 0.2037 seg_src 0.1600 dom 0.0577 seg_tgt 0.0000 grl 0.79 +[14:14:29][ 119s] epoch 5/15 loss 0.1695 seg_src 0.1407 dom 0.0292 seg_tgt 0.0000 grl 0.89 val_dice 0.1782 +[14:14:53][ 143s] epoch 6/15 loss 0.1701 seg_src 0.1466 dom 0.0235 seg_tgt 0.0000 grl 0.95 +[14:15:17][ 167s] epoch 7/15 loss 0.1515 seg_src 0.1351 dom 0.0164 seg_tgt 0.0000 grl 0.97 +[14:15:41][ 190s] epoch 8/15 loss 0.1309 seg_src 0.1178 dom 0.0131 seg_tgt 0.0000 grl 0.99 +[14:16:04][ 214s] epoch 9/15 loss 0.1193 seg_src 0.1067 dom 0.0127 seg_tgt 0.0000 grl 0.99 +[14:16:28][ 238s] epoch 10/15 loss 0.1068 seg_src 0.0957 dom 0.0112 seg_tgt 0.0000 grl 1.00 val_dice 0.0983 | TEST patch_dice 0.2614 image_dice 0.2294 +[14:16:52][ 261s] epoch 11/15 loss 0.1228 seg_src 0.1109 dom 0.0118 seg_tgt 0.0000 grl 1.00 +[14:17:16][ 285s] epoch 12/15 loss 0.1150 seg_src 0.1045 dom 0.0105 seg_tgt 0.0000 grl 1.00 +[14:17:39][ 309s] epoch 13/15 loss 0.1084 seg_src 0.0990 dom 0.0094 seg_tgt 0.0000 grl 1.00 +[14:18:03][ 332s] epoch 14/15 loss 0.0900 seg_src 0.0805 dom 0.0095 seg_tgt 0.0000 grl 1.00 +[14:18:27][ 357s] epoch 15/15 loss 0.0883 seg_src 0.0791 dom 0.0092 seg_tgt 0.0000 grl 1.00 val_dice 0.0680 | TEST patch_dice 0.2342 image_dice 0.2047 +[14:18:27][ 357s] DONE test patch_dice 0.2342 image_dice 0.2047 patch_vi 0.6295 | cyclegan 0.0 min, train 5.9 min diff --git a/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mtda_e15_b0_s2/result.json b/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mtda_e15_b0_s2/result.json new file mode 100644 index 0000000000000000000000000000000000000000..fbb74f1ca81abefb4d210571c8cce9a346077651 --- /dev/null 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b/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mtda_e15_b0_s3/log.txt @@ -0,0 +1,17 @@ +[01:46:36][ 0s] START mtda target=katz-lab-berghia-connective task=membrane budget=0% (0/636 labeled) seed=3 epochs=15 x 80 steps | sources (1): octopus-vulgaris-vertical-lobe-sfltract | val 10 test 36 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[01:47:09][ 33s] epoch 1/15 loss 0.3652 seg_src 0.3629 dom 0.0851 seg_tgt 0.0000 grl 0.05 +[01:47:34][ 59s] epoch 2/15 loss 0.2451 seg_src 0.2268 dom 0.1605 seg_tgt 0.0000 grl 0.34 +[01:48:00][ 84s] epoch 3/15 loss 0.2345 seg_src 0.2098 dom 0.0687 seg_tgt 0.0000 grl 0.61 +[01:48:26][ 110s] epoch 4/15 loss 0.2253 seg_src 0.1807 dom 0.0582 seg_tgt 0.0000 grl 0.79 +[01:48:53][ 137s] epoch 5/15 loss 0.2095 seg_src 0.1744 dom 0.0356 seg_tgt 0.0000 grl 0.89 val_dice 0.2290 +[01:49:21][ 165s] epoch 6/15 loss 0.1780 seg_src 0.1532 dom 0.0247 seg_tgt 0.0000 grl 0.95 +[01:49:47][ 191s] epoch 7/15 loss 0.1743 seg_src 0.1518 dom 0.0224 seg_tgt 0.0000 grl 0.97 +[01:50:13][ 217s] epoch 8/15 loss 0.1508 seg_src 0.1321 dom 0.0188 seg_tgt 0.0000 grl 0.99 +[01:50:38][ 243s] epoch 9/15 loss 0.1440 seg_src 0.1269 dom 0.0171 seg_tgt 0.0000 grl 0.99 +[01:51:08][ 272s] epoch 10/15 loss 0.1500 seg_src 0.1323 dom 0.0178 seg_tgt 0.0000 grl 1.00 val_dice 0.0865 | TEST patch_dice 0.2676 image_dice 0.2386 +[01:51:33][ 298s] epoch 11/15 loss 0.1242 seg_src 0.1098 dom 0.0143 seg_tgt 0.0000 grl 1.00 +[01:52:02][ 326s] epoch 12/15 loss 0.1050 seg_src 0.0908 dom 0.0142 seg_tgt 0.0000 grl 1.00 +[01:52:28][ 352s] epoch 13/15 loss 0.1048 seg_src 0.0923 dom 0.0126 seg_tgt 0.0000 grl 1.00 +[01:52:53][ 378s] epoch 14/15 loss 0.1089 seg_src 0.0977 dom 0.0113 seg_tgt 0.0000 grl 1.00 +[01:53:23][ 407s] epoch 15/15 loss 0.1177 seg_src 0.1050 dom 0.0127 seg_tgt 0.0000 grl 1.00 val_dice 0.1244 | TEST patch_dice 0.2950 image_dice 0.2631 +[01:53:24][ 408s] DONE test patch_dice 0.2950 image_dice 0.2631 patch_vi 0.7246 | 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a/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mtda_e15_b100_s2/log.txt b/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mtda_e15_b100_s2/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..2530b5ad4e90f64051b6147b4885555d82fd1b11 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mtda_e15_b100_s2/log.txt @@ -0,0 +1,17 @@ +[14:04:12][ 0s] START mtda target=katz-lab-berghia-connective task=membrane budget=100% (636/636 labeled) seed=2 epochs=15 x 80 steps | sources (1): octopus-vulgaris-vertical-lobe-sfltract | val 10 test 36 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[14:04:45][ 34s] epoch 1/15 loss 0.6631 seg_src 0.3095 dom 0.1455 seg_tgt 0.3498 grl 0.05 +[14:05:18][ 66s] epoch 2/15 loss 0.4885 seg_src 0.2000 dom 0.2461 seg_tgt 0.2598 grl 0.34 +[14:05:51][ 99s] epoch 3/15 loss 0.4768 seg_src 0.1879 dom 0.1548 seg_tgt 0.2363 grl 0.61 +[14:06:24][ 132s] epoch 4/15 loss 0.4836 seg_src 0.1876 dom 0.0681 seg_tgt 0.2444 grl 0.79 +[14:06:57][ 165s] epoch 5/15 loss 0.3862 seg_src 0.1528 dom 0.0387 seg_tgt 0.1952 grl 0.89 val_dice 0.0610 +[14:07:30][ 198s] epoch 6/15 loss 0.3745 seg_src 0.1537 dom 0.0340 seg_tgt 0.1867 grl 0.95 +[14:08:03][ 231s] epoch 7/15 loss 0.3450 seg_src 0.1438 dom 0.0297 seg_tgt 0.1715 grl 0.97 +[14:08:36][ 264s] epoch 8/15 loss 0.3155 seg_src 0.1354 dom 0.0242 seg_tgt 0.1559 grl 0.99 +[14:09:09][ 297s] epoch 9/15 loss 0.3176 seg_src 0.1400 dom 0.0222 seg_tgt 0.1554 grl 0.99 +[14:09:42][ 331s] epoch 10/15 loss 0.2874 seg_src 0.1232 dom 0.0238 seg_tgt 0.1404 grl 1.00 val_dice 0.1221 | TEST patch_dice 0.3021 image_dice 0.2567 +[14:10:15][ 363s] epoch 11/15 loss 0.2477 seg_src 0.0976 dom 0.0212 seg_tgt 0.1290 grl 1.00 +[14:10:48][ 397s] epoch 12/15 loss 0.2571 seg_src 0.1152 dom 0.0202 seg_tgt 0.1218 grl 1.00 +[14:11:21][ 429s] epoch 13/15 loss 0.2377 seg_src 0.0981 dom 0.0221 seg_tgt 0.1176 grl 1.00 +[14:11:54][ 462s] epoch 14/15 loss 0.2272 seg_src 0.1011 dom 0.0206 seg_tgt 0.1055 grl 1.00 +[14:12:27][ 496s] epoch 15/15 loss 0.2220 seg_src 0.0973 dom 0.0189 seg_tgt 0.1059 grl 1.00 val_dice 0.2813 | TEST patch_dice 0.3377 image_dice 0.2812 +[14:12:28][ 496s] DONE test patch_dice 0.3377 image_dice 0.2812 patch_vi 0.6404 | cyclegan 0.0 min, train 8.2 min diff --git a/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mtda_e15_b100_s2/result.json b/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mtda_e15_b100_s2/result.json new file mode 100644 index 0000000000000000000000000000000000000000..ede5c1088b627029be42da4ba4ed05ea6a20b14e --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mtda_e15_b100_s2/result.json @@ -0,0 +1,249 @@ +{ + "task": "membrane", + "target": "katz-lab-berghia-connective", + "variant": "mtda", + "budget": 100.0, + "seed": 2, + "epochs": 15, + "steps_per_epoch": 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START mtda target=katz-lab-berghia-connective task=membrane budget=100% (636/636 labeled) seed=3 epochs=15 x 80 steps | sources (1): octopus-vulgaris-vertical-lobe-sfltract | val 10 test 36 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[01:37:47][ 47s] epoch 1/15 loss 0.8691 seg_src 0.4014 dom 0.0979 seg_tgt 0.4652 grl 0.05 +[01:38:22][ 83s] epoch 2/15 loss 0.6938 seg_src 0.2999 dom 0.1762 seg_tgt 0.3735 grl 0.34 +[01:38:58][ 119s] epoch 3/15 loss 0.6544 seg_src 0.2585 dom 0.1659 seg_tgt 0.3359 grl 0.61 +[01:39:34][ 155s] epoch 4/15 loss 0.6031 seg_src 0.2378 dom 0.0845 seg_tgt 0.3035 grl 0.79 +[01:40:13][ 194s] epoch 5/15 loss 0.5102 seg_src 0.2117 dom 0.0326 seg_tgt 0.2663 grl 0.89 val_dice 0.2777 +[01:40:51][ 232s] epoch 6/15 loss 0.4390 seg_src 0.1809 dom 0.0293 seg_tgt 0.2287 grl 0.95 +[01:41:27][ 268s] epoch 7/15 loss 0.3976 seg_src 0.1656 dom 0.0270 seg_tgt 0.2050 grl 0.97 +[01:42:03][ 304s] epoch 8/15 loss 0.3743 seg_src 0.1573 dom 0.0288 seg_tgt 0.1882 grl 0.99 +[01:42:40][ 340s] epoch 9/15 loss 0.3307 seg_src 0.1378 dom 0.0272 seg_tgt 0.1657 grl 0.99 +[01:43:20][ 380s] epoch 10/15 loss 0.3189 seg_src 0.1375 dom 0.0245 seg_tgt 0.1569 grl 1.00 val_dice 0.1248 | TEST patch_dice 0.2810 image_dice 0.2327 +[01:43:55][ 416s] epoch 11/15 loss 0.3113 seg_src 0.1398 dom 0.0242 seg_tgt 0.1474 grl 1.00 +[01:44:34][ 455s] epoch 12/15 loss 0.2572 seg_src 0.1109 dom 0.0217 seg_tgt 0.1246 grl 1.00 +[01:45:10][ 491s] epoch 13/15 loss 0.2419 seg_src 0.1005 dom 0.0220 seg_tgt 0.1194 grl 1.00 +[01:45:47][ 527s] epoch 14/15 loss 0.2419 seg_src 0.1103 dom 0.0205 seg_tgt 0.1112 grl 1.00 +[01:46:26][ 567s] epoch 15/15 loss 0.2421 seg_src 0.1099 dom 0.0227 seg_tgt 0.1094 grl 1.00 val_dice 0.1299 | TEST patch_dice 0.3711 image_dice 0.3571 +[01:46:27][ 568s] DONE test patch_dice 0.3711 image_dice 0.3571 patch_vi 0.6753 | cyclegan 0.0 min, train 9.4 min diff --git 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only (no selection, final model); test: evaluation only", + "gpu": "NVIDIA GeForce RTX 3070", + "torch": "2.5.1+cu118" +} \ No newline at end of file diff --git a/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mtda_e15_b10_s2/log.txt b/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mtda_e15_b10_s2/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..6e513f61d2aa325455d9832c6f96e5bf08279e8b --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mtda_e15_b10_s2/log.txt @@ -0,0 +1,17 @@ +[16:01:23][ 0s] START mtda target=katz-lab-berghia-connective task=membrane budget=10% (63/636 labeled) seed=2 epochs=15 x 80 steps | sources (1): octopus-vulgaris-vertical-lobe-sfltract | val 10 test 36 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[16:01:58][ 35s] epoch 1/15 loss 0.6054 seg_src 0.3018 dom 0.1665 seg_tgt 0.2992 grl 0.05 +[16:02:31][ 68s] epoch 2/15 loss 0.4647 seg_src 0.2022 dom 0.2632 seg_tgt 0.2320 grl 0.34 +[16:03:04][ 101s] epoch 3/15 loss 0.4550 seg_src 0.1854 dom 0.1789 seg_tgt 0.2055 grl 0.61 +[16:03:37][ 134s] epoch 4/15 loss 0.4102 seg_src 0.1771 dom 0.0627 seg_tgt 0.1867 grl 0.79 +[16:04:10][ 168s] epoch 5/15 loss 0.3526 seg_src 0.1482 dom 0.0391 seg_tgt 0.1658 grl 0.89 val_dice 0.2131 +[16:04:44][ 201s] epoch 6/15 loss 0.3231 seg_src 0.1404 dom 0.0349 seg_tgt 0.1478 grl 0.95 +[16:05:17][ 234s] epoch 7/15 loss 0.2993 seg_src 0.1321 dom 0.0309 seg_tgt 0.1363 grl 0.97 +[16:05:50][ 267s] epoch 8/15 loss 0.2601 seg_src 0.1193 dom 0.0270 seg_tgt 0.1139 grl 0.99 +[16:06:23][ 300s] epoch 9/15 loss 0.2561 seg_src 0.1219 dom 0.0253 seg_tgt 0.1088 grl 0.99 +[16:06:57][ 334s] epoch 10/15 loss 0.2367 seg_src 0.1116 dom 0.0252 seg_tgt 0.0999 grl 1.00 val_dice 0.0421 | TEST patch_dice 0.1091 image_dice 0.1124 +[16:07:30][ 367s] epoch 11/15 loss 0.2218 seg_src 0.1040 dom 0.0218 seg_tgt 0.0959 grl 1.00 +[16:08:03][ 401s] epoch 12/15 loss 0.2118 seg_src 0.1047 dom 0.0208 seg_tgt 0.0864 grl 1.00 +[16:08:36][ 434s] epoch 13/15 loss 0.2045 seg_src 0.1033 dom 0.0215 seg_tgt 0.0797 grl 1.00 +[16:09:09][ 467s] epoch 14/15 loss 0.1902 seg_src 0.0960 dom 0.0210 seg_tgt 0.0732 grl 1.00 +[16:09:43][ 501s] epoch 15/15 loss 0.1939 seg_src 0.0911 dom 0.0216 seg_tgt 0.0811 grl 1.00 val_dice 0.1248 | TEST patch_dice 0.3513 image_dice 0.3204 +[16:09:44][ 501s] DONE test patch_dice 0.3513 image_dice 0.3204 patch_vi 0.6313 | cyclegan 0.0 min, train 8.3 min diff --git a/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mtda_e15_b10_s2/result.json b/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mtda_e15_b10_s2/result.json new file mode 100644 index 0000000000000000000000000000000000000000..ff54334ea1d6d7ac1a3fb8f8bf7cee7986615279 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/membrane/katz-lab-berghia-connective/mtda_e15_b10_s2/result.json @@ -0,0 +1,249 @@ +{ + 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0000000000000000000000000000000000000000..c33144353256e5a5ab1257987372e43a0a61ebf9 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/membrane/octopus-vulgaris-vertical-lobe-sfltract/mldb_e15_b0_s2/log.txt @@ -0,0 +1,17 @@ +[17:14:36][ 0s] START mldb target=octopus-vulgaris-vertical-lobe-sfltract task=membrane budget=0% (0/3584 labeled) seed=2 epochs=15 x 400 steps | sources (1): octopus-vulgaris-vertical-lobe-glia-deep-neuropil | val 768 test 768 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[17:17:24][ 168s] epoch 1/15 loss 0.2231 seg_src 0.2150 dom 0.3955 seg_tgt 0.0000 grl 0.05 +[17:20:10][ 334s] epoch 2/15 loss 0.1441 seg_src 0.1223 dom 0.2060 seg_tgt 0.0000 grl 0.34 +[17:22:57][ 501s] epoch 3/15 loss 0.1400 seg_src 0.0948 dom 0.1233 seg_tgt 0.0000 grl 0.61 +[17:25:43][ 667s] epoch 4/15 loss 0.1394 seg_src 0.0785 dom 0.0800 seg_tgt 0.0000 grl 0.79 +[17:28:34][ 838s] epoch 5/15 loss 0.1304 seg_src 0.0690 dom 0.0621 seg_tgt 0.0000 grl 0.89 val_dice 0.6526 +[17:31:21][ 1006s] epoch 6/15 loss 0.1120 seg_src 0.0591 dom 0.0529 seg_tgt 0.0000 grl 0.95 +[17:34:08][ 1173s] epoch 7/15 loss 0.1073 seg_src 0.0569 dom 0.0504 seg_tgt 0.0000 grl 0.97 +[17:36:56][ 1340s] epoch 8/15 loss 0.0968 seg_src 0.0517 dom 0.0451 seg_tgt 0.0000 grl 0.99 +[17:39:46][ 1511s] epoch 9/15 loss 0.0940 seg_src 0.0500 dom 0.0440 seg_tgt 0.0000 grl 0.99 +[17:42:43][ 1688s] epoch 10/15 loss 0.0858 seg_src 0.0466 dom 0.0391 seg_tgt 0.0000 grl 1.00 val_dice 0.8490 | TEST patch_dice 0.8222 image_dice 0.6990 +[17:45:32][ 1857s] epoch 11/15 loss 0.0814 seg_src 0.0429 dom 0.0384 seg_tgt 0.0000 grl 1.00 +[17:48:21][ 2025s] epoch 12/15 loss 0.0807 seg_src 0.0422 dom 0.0385 seg_tgt 0.0000 grl 1.00 +[17:51:09][ 2193s] epoch 13/15 loss 0.0767 seg_src 0.0397 dom 0.0370 seg_tgt 0.0000 grl 1.00 +[17:53:59][ 2364s] epoch 14/15 loss 0.0749 seg_src 0.0366 dom 0.0384 seg_tgt 0.0000 grl 1.00 +[17:56:58][ 2542s] epoch 15/15 loss 0.0720 seg_src 0.0361 dom 0.0359 seg_tgt 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pool + random upfront budget of train labels; val: logged only (no selection, final model); test: evaluation only", + "gpu": "NVIDIA GeForce RTX 3070", + "torch": "2.5.1+cu118" +} \ No newline at end of file diff --git a/baselines/adapt/bayzid-system-2/runs/membrane/octopus-vulgaris-vertical-lobe-sfltract/mldb_e15_b10_s3/log.txt b/baselines/adapt/bayzid-system-2/runs/membrane/octopus-vulgaris-vertical-lobe-sfltract/mldb_e15_b10_s3/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..10dfbc37841e943c96a9449108f0a3b8ce4e38b7 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/membrane/octopus-vulgaris-vertical-lobe-sfltract/mldb_e15_b10_s3/log.txt @@ -0,0 +1 @@ +[04:03:37][ 1s] START mldb target=octopus-vulgaris-vertical-lobe-sfltract task=membrane budget=10% (358/3584 labeled) seed=3 epochs=15 x 400 steps | sources (1): octopus-vulgaris-vertical-lobe-glia-deep-neuropil | val 768 test 768 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 diff --git a/baselines/adapt/bayzid-system-2/runs/membrane/octopus-vulgaris-vertical-lobe-sfltract/mtda_e15_b0_s2/log.txt b/baselines/adapt/bayzid-system-2/runs/membrane/octopus-vulgaris-vertical-lobe-sfltract/mtda_e15_b0_s2/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..8a86c962c0b3aedfec6d2bd65bc30b0172ec6ddc --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/membrane/octopus-vulgaris-vertical-lobe-sfltract/mtda_e15_b0_s2/log.txt @@ -0,0 +1,17 @@ +[16:44:45][ 0s] START mtda target=octopus-vulgaris-vertical-lobe-sfltract task=membrane budget=0% (0/3584 labeled) seed=2 epochs=15 x 400 steps | sources (1): octopus-vulgaris-vertical-lobe-glia-deep-neuropil | val 768 test 768 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[16:46:46][ 121s] epoch 1/15 loss 0.1871 seg_src 0.1824 dom 0.1962 seg_tgt 0.0000 grl 0.05 +[16:48:42][ 237s] epoch 2/15 loss 0.1286 seg_src 0.1171 dom 0.1105 seg_tgt 0.0000 grl 0.34 +[16:50:39][ 354s] epoch 3/15 loss 0.1065 seg_src 0.0970 dom 0.0284 seg_tgt 0.0000 grl 0.61 +[16:52:36][ 471s] epoch 4/15 loss 0.0878 seg_src 0.0805 dom 0.0097 seg_tgt 0.0000 grl 0.79 +[16:54:37][ 592s] epoch 5/15 loss 0.0762 seg_src 0.0707 dom 0.0056 seg_tgt 0.0000 grl 0.89 val_dice 0.8237 +[16:56:34][ 709s] epoch 6/15 loss 0.0677 seg_src 0.0630 dom 0.0048 seg_tgt 0.0000 grl 0.95 +[16:58:31][ 826s] epoch 7/15 loss 0.0651 seg_src 0.0611 dom 0.0040 seg_tgt 0.0000 grl 0.97 +[17:00:29][ 944s] epoch 8/15 loss 0.0592 seg_src 0.0560 dom 0.0032 seg_tgt 0.0000 grl 0.99 +[17:02:27][ 1062s] epoch 9/15 loss 0.0577 seg_src 0.0546 dom 0.0032 seg_tgt 0.0000 grl 0.99 +[17:04:33][ 1188s] epoch 10/15 loss 0.0527 seg_src 0.0495 dom 0.0032 seg_tgt 0.0000 grl 1.00 val_dice 0.8267 | TEST patch_dice 0.7998 image_dice 0.6725 +[17:06:32][ 1306s] epoch 11/15 loss 0.0508 seg_src 0.0477 dom 0.0031 seg_tgt 0.0000 grl 1.00 +[17:08:29][ 1424s] epoch 12/15 loss 0.0511 seg_src 0.0482 dom 0.0029 seg_tgt 0.0000 grl 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+[22:55:36][ 1s] START mtda target=octopus-vulgaris-vertical-lobe-sfltract task=membrane budget=10% (358/3584 labeled) seed=2 epochs=15 x 400 steps | sources (1): octopus-vulgaris-vertical-lobe-glia-deep-neuropil | val 768 test 768 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[22:58:37][ 182s] epoch 1/15 loss 0.4109 seg_src 0.1956 dom 0.2506 seg_tgt 0.2092 grl 0.05 +[23:01:33][ 357s] epoch 2/15 loss 0.2604 seg_src 0.1138 dom 0.1908 seg_tgt 0.1272 grl 0.34 +[23:04:31][ 535s] epoch 3/15 loss 0.2260 seg_src 0.0923 dom 0.0721 seg_tgt 0.1101 grl 0.61 +[23:07:29][ 713s] epoch 4/15 loss 0.1772 seg_src 0.0763 dom 0.0120 seg_tgt 0.0920 grl 0.79 +[23:10:31][ 896s] epoch 5/15 loss 0.1763 seg_src 0.0790 dom 0.0075 seg_tgt 0.0899 grl 0.89 val_dice 0.8258 +[23:13:31][ 1075s] epoch 6/15 loss 0.1498 seg_src 0.0669 dom 0.0057 seg_tgt 0.0773 grl 0.95 +[23:16:33][ 1258s] epoch 7/15 loss 0.1382 seg_src 0.0623 dom 0.0052 seg_tgt 0.0708 grl 0.97 +[23:19:35][ 1439s] epoch 8/15 loss 0.1312 seg_src 0.0598 dom 0.0057 seg_tgt 0.0657 grl 0.99 +[23:22:42][ 1627s] epoch 9/15 loss 0.1197 seg_src 0.0569 dom 0.0055 seg_tgt 0.0574 grl 0.99 +[23:26:01][ 1825s] epoch 10/15 loss 0.1274 seg_src 0.0573 dom 0.0048 seg_tgt 0.0653 grl 1.00 val_dice 0.8712 | TEST patch_dice 0.8602 image_dice 0.7928 +[23:29:07][ 2012s] epoch 11/15 loss 0.1052 seg_src 0.0491 dom 0.0053 seg_tgt 0.0508 grl 1.00 +[23:32:11][ 2196s] epoch 12/15 loss 0.1100 seg_src 0.0488 dom 0.0054 seg_tgt 0.0558 grl 1.00 +[23:35:15][ 2379s] epoch 13/15 loss 0.1144 seg_src 0.0538 dom 0.0066 seg_tgt 0.0540 grl 1.00 +[23:38:22][ 2566s] epoch 14/15 loss 0.0942 seg_src 0.0454 dom 0.0054 seg_tgt 0.0434 grl 1.00 +[23:41:44][ 2768s] epoch 15/15 loss 0.0916 seg_src 0.0436 dom 0.0060 seg_tgt 0.0419 grl 1.00 val_dice 0.8802 | TEST patch_dice 0.8574 image_dice 0.8038 +[23:41:46][ 2770s] DONE test patch_dice 0.8574 image_dice 0.8038 patch_vi 0.1752 | cyclegan 0.0 min, train 46.1 min diff --git 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a/baselines/adapt/bayzid-system-2/runs/membrane/whole-mouse-brain/mtda_e15_b10_s2/log.txt b/baselines/adapt/bayzid-system-2/runs/membrane/whole-mouse-brain/mtda_e15_b10_s2/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..88db8efda9ebde2e433cede704c32d5072e57596 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/membrane/whole-mouse-brain/mtda_e15_b10_s2/log.txt @@ -0,0 +1,17 @@ +[22:11:52][ 6s] START mtda target=whole-mouse-brain task=membrane budget=10% (592/5925 labeled) seed=2 epochs=15 x 400 steps | sources (1): dhanyasi-P14-mouse-cerebellum | val 1250 test 1300 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[22:14:49][ 183s] epoch 1/15 loss 0.7185 seg_src 0.3610 dom 0.0496 seg_tgt 0.3563 grl 0.05 +[22:17:37][ 351s] epoch 2/15 loss 0.5389 seg_src 0.2765 dom 0.0380 seg_tgt 0.2582 grl 0.34 +[22:20:26][ 521s] epoch 3/15 loss 0.4610 seg_src 0.2465 dom 0.0289 seg_tgt 0.2040 grl 0.61 +[22:23:14][ 689s] epoch 4/15 loss 0.4180 seg_src 0.2304 dom 0.0226 seg_tgt 0.1702 grl 0.79 +[22:26:12][ 867s] epoch 5/15 loss 0.3673 seg_src 0.2161 dom 0.0210 seg_tgt 0.1304 grl 0.89 val_dice 0.6793 +[22:29:03][ 1037s] epoch 6/15 loss 0.3272 seg_src 0.2041 dom 0.0208 seg_tgt 0.1023 grl 0.95 +[22:31:54][ 1208s] epoch 7/15 loss 0.2874 seg_src 0.1888 dom 0.0203 seg_tgt 0.0783 grl 0.97 +[22:34:44][ 1378s] epoch 8/15 loss 0.2631 seg_src 0.1791 dom 0.0182 seg_tgt 0.0657 grl 0.99 +[22:37:35][ 1549s] epoch 9/15 loss 0.2384 seg_src 0.1677 dom 0.0161 seg_tgt 0.0547 grl 0.99 +[22:40:40][ 1734s] epoch 10/15 loss 0.2115 seg_src 0.1517 dom 0.0151 seg_tgt 0.0447 grl 1.00 val_dice 0.6590 | TEST patch_dice 0.6411 image_dice 0.7908 +[22:43:32][ 1906s] epoch 11/15 loss 0.2110 seg_src 0.1470 dom 0.0172 seg_tgt 0.0468 grl 1.00 +[22:46:27][ 2081s] epoch 12/15 loss 0.1817 seg_src 0.1299 dom 0.0148 seg_tgt 0.0370 grl 1.00 +[22:49:20][ 2254s] epoch 13/15 loss 0.1727 seg_src 0.1240 dom 0.0142 seg_tgt 0.0345 grl 1.00 +[22:52:17][ 2431s] epoch 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val 147 test 147 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[15:53:15][ 36s] epoch 1/15 loss 0.1658 seg_src 0.1564 dom 0.4121 seg_tgt 0.0000 grl 0.05 +[15:53:50][ 71s] epoch 2/15 loss 0.1180 seg_src 0.0799 dom 0.3460 seg_tgt 0.0000 grl 0.34 +[15:54:24][ 105s] epoch 3/15 loss 0.1532 seg_src 0.0656 dom 0.2384 seg_tgt 0.0000 grl 0.61 +[15:54:58][ 139s] epoch 4/15 loss 0.2084 seg_src 0.0542 dom 0.2010 seg_tgt 0.0000 grl 0.79 +[15:55:34][ 175s] epoch 5/15 loss 0.2078 seg_src 0.0475 dom 0.1621 seg_tgt 0.0000 grl 0.89 val_dice 0.1360 +[15:56:08][ 209s] epoch 6/15 loss 0.1871 seg_src 0.0421 dom 0.1449 seg_tgt 0.0000 grl 0.95 +[15:56:42][ 243s] epoch 7/15 loss 0.1743 seg_src 0.0437 dom 0.1306 seg_tgt 0.0000 grl 0.97 +[15:57:16][ 277s] epoch 8/15 loss 0.1593 seg_src 0.0376 dom 0.1217 seg_tgt 0.0000 grl 0.99 +[15:57:50][ 311s] epoch 9/15 loss 0.1347 seg_src 0.0344 dom 0.1003 seg_tgt 0.0000 grl 0.99 +[15:58:27][ 348s] epoch 10/15 loss 0.1263 seg_src 0.0323 dom 0.0940 seg_tgt 0.0000 grl 1.00 val_dice 0.0800 | TEST patch_dice 0.0947 image_dice 0.0976 +[15:59:01][ 382s] epoch 11/15 loss 0.1184 seg_src 0.0279 dom 0.0905 seg_tgt 0.0000 grl 1.00 +[15:59:35][ 416s] epoch 12/15 loss 0.1022 seg_src 0.0262 dom 0.0760 seg_tgt 0.0000 grl 1.00 +[16:00:09][ 451s] epoch 13/15 loss 0.1143 seg_src 0.0259 dom 0.0884 seg_tgt 0.0000 grl 1.00 +[16:00:43][ 485s] epoch 14/15 loss 0.1022 seg_src 0.0254 dom 0.0768 seg_tgt 0.0000 grl 1.00 +[16:01:20][ 521s] epoch 15/15 loss 0.1008 seg_src 0.0227 dom 0.0781 seg_tgt 0.0000 grl 1.00 val_dice 0.0609 | TEST patch_dice 0.0758 image_dice 0.0867 +[16:01:20][ 521s] DONE test patch_dice 0.0758 image_dice 0.0867 patch_vi 0.7009 | cyclegan 0.0 min, train 8.7 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mldb_e15_b0_s2/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mldb_e15_b0_s2/result.json new file mode 100644 index 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b/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mldb_e15_b0_s3/log.txt @@ -0,0 +1,17 @@ +[02:19:40][ 0s] START mldb target=drosophila-vnc task=mitochondria budget=0% (0/686 labeled) seed=3 epochs=15 x 86 steps | sources (1): lucchi-pp | val 147 test 147 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[02:20:25][ 45s] epoch 1/15 loss 0.1895 seg_src 0.1822 dom 0.2883 seg_tgt 0.0000 grl 0.05 +[02:21:01][ 81s] epoch 2/15 loss 0.1306 seg_src 0.0881 dom 0.3805 seg_tgt 0.0000 grl 0.34 +[02:21:38][ 118s] epoch 3/15 loss 0.1657 seg_src 0.0716 dom 0.2585 seg_tgt 0.0000 grl 0.61 +[02:22:14][ 155s] epoch 4/15 loss 0.2189 seg_src 0.0644 dom 0.2025 seg_tgt 0.0000 grl 0.79 +[02:22:54][ 194s] epoch 5/15 loss 0.2207 seg_src 0.0612 dom 0.1613 seg_tgt 0.0000 grl 0.89 val_dice 0.0855 +[02:23:31][ 231s] epoch 6/15 loss 0.1906 seg_src 0.0538 dom 0.1368 seg_tgt 0.0000 grl 0.95 +[02:24:09][ 269s] epoch 7/15 loss 0.1631 seg_src 0.0475 dom 0.1157 seg_tgt 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new file mode 100644 index 0000000000000000000000000000000000000000..5cfa26816a96302772c38d45a5f925fa27e35839 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mldb_e15_b10_s3/log.txt @@ -0,0 +1 @@ +[04:02:27][ 0s] START mldb target=drosophila-vnc task=mitochondria budget=10% (68/686 labeled) seed=3 epochs=15 x 86 steps | sources (1): lucchi-pp | val 147 test 147 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mtda_e15_b0_s2/log.txt b/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mtda_e15_b0_s2/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..10f30a93532fb72b7646cee0963855ec0c2888a2 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mtda_e15_b0_s2/log.txt @@ -0,0 +1,17 @@ +[15:46:21][ 0s] START mtda target=drosophila-vnc task=mitochondria budget=0% (0/686 labeled) seed=2 epochs=15 x 86 steps | sources (1): lucchi-pp | val 147 test 147 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[15:46:47][ 26s] epoch 1/15 loss 0.1872 seg_src 0.1844 dom 0.1178 seg_tgt 0.0000 grl 0.05 +[15:47:12][ 51s] epoch 2/15 loss 0.1095 seg_src 0.0966 dom 0.1168 seg_tgt 0.0000 grl 0.34 +[15:47:36][ 75s] epoch 3/15 loss 0.1139 seg_src 0.0801 dom 0.0922 seg_tgt 0.0000 grl 0.61 +[15:48:01][ 100s] epoch 4/15 loss 0.1137 seg_src 0.0769 dom 0.0488 seg_tgt 0.0000 grl 0.79 +[15:48:26][ 125s] epoch 5/15 loss 0.1077 seg_src 0.0740 dom 0.0341 seg_tgt 0.0000 grl 0.89 val_dice 0.2673 +[15:48:51][ 150s] epoch 6/15 loss 0.0951 seg_src 0.0672 dom 0.0279 seg_tgt 0.0000 grl 0.95 +[15:49:15][ 174s] epoch 7/15 loss 0.0784 seg_src 0.0552 dom 0.0232 seg_tgt 0.0000 grl 0.97 +[15:49:40][ 199s] epoch 8/15 loss 0.0670 seg_src 0.0466 dom 0.0204 seg_tgt 0.0000 grl 0.99 +[15:50:04][ 223s] epoch 9/15 loss 0.0550 seg_src 0.0399 dom 0.0151 seg_tgt 0.0000 grl 0.99 +[15:50:31][ 250s] epoch 10/15 loss 0.0496 seg_src 0.0365 dom 0.0131 seg_tgt 0.0000 grl 1.00 val_dice 0.4434 | TEST patch_dice 0.5554 image_dice 0.6785 +[15:50:55][ 274s] epoch 11/15 loss 0.0403 seg_src 0.0300 dom 0.0103 seg_tgt 0.0000 grl 1.00 +[15:51:20][ 299s] epoch 12/15 loss 0.0378 seg_src 0.0285 dom 0.0093 seg_tgt 0.0000 grl 1.00 +[15:51:44][ 323s] epoch 13/15 loss 0.0341 seg_src 0.0254 dom 0.0087 seg_tgt 0.0000 grl 1.00 +[15:52:09][ 348s] epoch 14/15 loss 0.0326 seg_src 0.0249 dom 0.0076 seg_tgt 0.0000 grl 1.00 +[15:52:36][ 375s] epoch 15/15 loss 0.0290 seg_src 0.0216 dom 0.0074 seg_tgt 0.0000 grl 1.00 val_dice 0.5653 | TEST patch_dice 0.6121 image_dice 0.7316 +[15:52:36][ 375s] DONE test patch_dice 0.6121 image_dice 0.7316 patch_vi 0.2057 | cyclegan 0.0 min, train 6.2 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mtda_e15_b0_s2/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mtda_e15_b0_s2/result.json new 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b/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mtda_e15_b0_s3/log.txt @@ -0,0 +1,17 @@ +[02:29:33][ 0s] START mtda target=drosophila-vnc task=mitochondria budget=0% (0/686 labeled) seed=3 epochs=15 x 86 steps | sources (1): lucchi-pp | val 147 test 147 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[02:30:09][ 36s] epoch 1/15 loss 0.2434 seg_src 0.2410 dom 0.0988 seg_tgt 0.0000 grl 0.05 +[02:30:36][ 63s] epoch 2/15 loss 0.1495 seg_src 0.1356 dom 0.1260 seg_tgt 0.0000 grl 0.34 +[02:31:03][ 90s] epoch 3/15 loss 0.1373 seg_src 0.1011 dom 0.0973 seg_tgt 0.0000 grl 0.61 +[02:31:30][ 118s] epoch 4/15 loss 0.1408 seg_src 0.0924 dom 0.0646 seg_tgt 0.0000 grl 0.79 +[02:32:01][ 148s] epoch 5/15 loss 0.1305 seg_src 0.0885 dom 0.0424 seg_tgt 0.0000 grl 0.89 val_dice 0.1934 +[02:32:28][ 175s] epoch 6/15 loss 0.1079 seg_src 0.0735 dom 0.0344 seg_tgt 0.0000 grl 0.95 +[02:32:55][ 203s] epoch 7/15 loss 0.0950 seg_src 0.0654 dom 0.0296 seg_tgt 0.0000 grl 0.97 +[02:33:23][ 230s] epoch 8/15 loss 0.0828 seg_src 0.0561 dom 0.0267 seg_tgt 0.0000 grl 0.99 +[02:33:51][ 258s] epoch 9/15 loss 0.0723 seg_src 0.0503 dom 0.0220 seg_tgt 0.0000 grl 0.99 +[02:34:24][ 291s] epoch 10/15 loss 0.0623 seg_src 0.0434 dom 0.0189 seg_tgt 0.0000 grl 1.00 val_dice 0.4187 | TEST patch_dice 0.4964 image_dice 0.5693 +[02:34:51][ 318s] epoch 11/15 loss 0.0595 seg_src 0.0424 dom 0.0171 seg_tgt 0.0000 grl 1.00 +[02:35:21][ 348s] epoch 12/15 loss 0.0531 seg_src 0.0387 dom 0.0143 seg_tgt 0.0000 grl 1.00 +[02:35:48][ 375s] epoch 13/15 loss 0.0441 seg_src 0.0323 dom 0.0118 seg_tgt 0.0000 grl 1.00 +[02:36:16][ 403s] epoch 14/15 loss 0.0402 seg_src 0.0295 dom 0.0107 seg_tgt 0.0000 grl 1.00 +[02:36:49][ 436s] epoch 15/15 loss 0.0375 seg_src 0.0278 dom 0.0097 seg_tgt 0.0000 grl 1.00 val_dice 0.3675 | TEST patch_dice 0.5089 image_dice 0.6048 +[02:36:50][ 437s] DONE test patch_dice 0.5089 image_dice 0.6048 patch_vi 0.3164 | cyclegan 0.0 min, train 7.2 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mtda_e15_b0_s3/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mtda_e15_b0_s3/result.json new file mode 100644 index 0000000000000000000000000000000000000000..2f871a8d7a771aa1d6ed507fe620a581e47af687 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mtda_e15_b0_s3/result.json @@ -0,0 +1,249 @@ +{ + "task": "mitochondria", + "target": "drosophila-vnc", + "variant": "mtda", + "budget": 0.0, + "seed": 3, + "epochs": 15, + "steps_per_epoch": 86, + "labeled_patches": 0, + "train_pool": 686, + "sources": [ + "lucchi-pp" + ], + "args": { + "macs_repo": "/mnt/sdc1/connectomics/MACS-2", + "method": "mtda", + "source": "lucchi-pp", + "task": "mitochondria", + "target": "drosophila-vnc", + "budget": 0.0, + "seed": 3, + "epochs": 15, + "max_steps": 400, + "bs": 8, + "src_bs": 8, + "lr": 0.0001, + "gamma": 10.0, + "mu": 0.1, + "gan_iters": 1500, + "gan_bs": 4, + 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b/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mtda_e15_b100_s2/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..c95952b5038a3d0d96eeeece85eb7a29eaa08fe5 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mtda_e15_b100_s2/log.txt @@ -0,0 +1,17 @@ +[15:37:35][ 0s] START mtda target=drosophila-vnc task=mitochondria budget=100% (686/686 labeled) seed=2 epochs=15 x 86 steps | sources (1): lucchi-pp | val 147 test 147 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[15:38:11][ 36s] epoch 1/15 loss 0.5034 seg_src 0.2376 dom 0.2090 seg_tgt 0.2604 grl 0.05 +[15:38:46][ 71s] epoch 2/15 loss 0.3333 seg_src 0.1495 dom 0.3031 seg_tgt 0.1499 grl 0.34 +[15:39:20][ 105s] epoch 3/15 loss 0.2713 seg_src 0.1148 dom 0.1599 seg_tgt 0.1003 grl 0.61 +[15:39:54][ 139s] epoch 4/15 loss 0.2554 seg_src 0.0923 dom 0.1151 seg_tgt 0.0745 grl 0.79 +[15:40:30][ 175s] epoch 5/15 loss 0.2468 seg_src 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+ "data_access": "sources: labeled train patches; target: unlabeled train pool + random upfront budget of train labels; val: logged only (no selection, final model); test: evaluation only", + "gpu": "NVIDIA GeForce RTX 3070", + "torch": "2.5.1+cu118" +} \ No newline at end of file diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mtda_e15_b100_s3/log.txt b/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mtda_e15_b100_s3/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..05f1a67ce7d09e9ce89e0fa532640fd8b5ed34d4 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mtda_e15_b100_s3/log.txt @@ -0,0 +1,17 @@ +[02:37:00][ 0s] START mtda target=drosophila-vnc task=mitochondria budget=100% (686/686 labeled) seed=3 epochs=15 x 86 steps | sources (1): lucchi-pp | val 147 test 147 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[02:37:47][ 47s] epoch 1/15 loss 0.6614 seg_src 0.3110 dom 0.1701 seg_tgt 0.3459 grl 0.05 +[02:38:26][ 85s] epoch 2/15 loss 0.4545 seg_src 0.2081 dom 0.3073 seg_tgt 0.2111 grl 0.34 +[02:39:05][ 124s] epoch 3/15 loss 0.3807 seg_src 0.1604 dom 0.1740 seg_tgt 0.1595 grl 0.61 +[02:39:43][ 163s] epoch 4/15 loss 0.3297 seg_src 0.1322 dom 0.1047 seg_tgt 0.1172 grl 0.79 +[02:40:25][ 205s] epoch 5/15 loss 0.2947 seg_src 0.1069 dom 0.0980 seg_tgt 0.0908 grl 0.89 val_dice 0.6335 +[02:41:04][ 243s] epoch 6/15 loss 0.2649 seg_src 0.0921 dom 0.0972 seg_tgt 0.0755 grl 0.95 +[02:41:43][ 282s] epoch 7/15 loss 0.2400 seg_src 0.0790 dom 0.0954 seg_tgt 0.0656 grl 0.97 +[02:42:21][ 321s] epoch 8/15 loss 0.2201 seg_src 0.0687 dom 0.0927 seg_tgt 0.0587 grl 0.99 +[02:43:01][ 360s] epoch 9/15 loss 0.2028 seg_src 0.0659 dom 0.0829 seg_tgt 0.0539 grl 0.99 +[02:43:45][ 405s] epoch 10/15 loss 0.1830 seg_src 0.0654 dom 0.0635 seg_tgt 0.0542 grl 1.00 val_dice 0.7767 | TEST patch_dice 0.7936 image_dice 0.8708 +[02:44:24][ 444s] epoch 11/15 loss 0.1655 seg_src 0.0613 dom 0.0528 seg_tgt 0.0514 grl 1.00 +[02:45:05][ 485s] epoch 12/15 loss 0.1460 seg_src 0.0541 dom 0.0456 seg_tgt 0.0463 grl 1.00 +[02:45:44][ 524s] epoch 13/15 loss 0.1288 seg_src 0.0509 dom 0.0359 seg_tgt 0.0420 grl 1.00 +[02:46:23][ 562s] epoch 14/15 loss 0.1202 seg_src 0.0471 dom 0.0331 seg_tgt 0.0401 grl 1.00 +[02:47:08][ 607s] epoch 15/15 loss 0.1057 seg_src 0.0411 dom 0.0294 seg_tgt 0.0352 grl 1.00 val_dice 0.7863 | TEST patch_dice 0.8386 image_dice 0.8605 +[02:47:09][ 609s] DONE test patch_dice 0.8386 image_dice 0.8605 patch_vi 0.1119 | cyclegan 0.0 min, train 10.1 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mtda_e15_b100_s3/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mtda_e15_b100_s3/result.json new file mode 100644 index 0000000000000000000000000000000000000000..15d0b50e216e746f4f7be5e55d91941e5ad695e9 --- /dev/null +++ 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0000000000000000000000000000000000000000..b5f3e6dd3328c5a50a1b0f90b44ed1fdfa650feb --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mtda_e15_b10_s2/log.txt @@ -0,0 +1,17 @@ +[16:35:35][ 0s] START mtda target=drosophila-vnc task=mitochondria budget=10% (68/686 labeled) seed=2 epochs=15 x 86 steps | sources (1): lucchi-pp | val 147 test 147 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[16:36:12][ 38s] epoch 1/15 loss 0.5052 seg_src 0.2401 dom 0.2080 seg_tgt 0.2598 grl 0.05 +[16:36:48][ 74s] epoch 2/15 loss 0.3178 seg_src 0.1484 dom 0.2908 seg_tgt 0.1370 grl 0.34 +[16:37:24][ 109s] epoch 3/15 loss 0.2680 seg_src 0.1195 dom 0.1668 seg_tgt 0.0894 grl 0.61 +[16:38:00][ 145s] epoch 4/15 loss 0.2427 seg_src 0.0893 dom 0.1164 seg_tgt 0.0638 grl 0.79 +[16:38:37][ 182s] epoch 5/15 loss 0.2422 seg_src 0.0739 dom 0.1173 seg_tgt 0.0522 grl 0.89 val_dice 0.7586 +[16:39:13][ 218s] epoch 6/15 loss 0.2302 seg_src 0.0696 dom 0.1083 seg_tgt 0.0522 grl 0.95 +[16:39:49][ 254s] epoch 7/15 loss 0.1997 seg_src 0.0693 dom 0.0775 seg_tgt 0.0529 grl 0.97 +[16:40:25][ 290s] epoch 8/15 loss 0.1769 seg_src 0.0663 dom 0.0624 seg_tgt 0.0482 grl 0.99 +[16:41:01][ 326s] epoch 9/15 loss 0.1597 seg_src 0.0616 dom 0.0544 seg_tgt 0.0438 grl 0.99 +[16:41:39][ 364s] epoch 10/15 loss 0.1392 seg_src 0.0518 dom 0.0487 seg_tgt 0.0387 grl 1.00 val_dice 0.6226 | TEST patch_dice 0.7114 image_dice 0.8042 +[16:42:15][ 400s] epoch 11/15 loss 0.1269 seg_src 0.0480 dom 0.0433 seg_tgt 0.0356 grl 1.00 +[16:42:51][ 437s] epoch 12/15 loss 0.1170 seg_src 0.0429 dom 0.0417 seg_tgt 0.0324 grl 1.00 +[16:43:27][ 473s] epoch 13/15 loss 0.1049 seg_src 0.0407 dom 0.0352 seg_tgt 0.0290 grl 1.00 +[16:44:04][ 509s] epoch 14/15 loss 0.0971 seg_src 0.0378 dom 0.0329 seg_tgt 0.0263 grl 1.00 +[16:44:42][ 548s] epoch 15/15 loss 0.0902 seg_src 0.0350 dom 0.0305 seg_tgt 0.0246 grl 1.00 val_dice 0.7738 | TEST patch_dice 0.8248 image_dice 0.8845 +[16:44:43][ 548s] DONE test patch_dice 0.8248 image_dice 0.8845 patch_vi 0.1143 | cyclegan 0.0 min, train 9.1 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mtda_e15_b10_s2/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mtda_e15_b10_s2/result.json new file mode 100644 index 0000000000000000000000000000000000000000..123105f118a4b7239ba65713297a2cf54003735f --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/drosophila-vnc/mtda_e15_b10_s2/result.json @@ -0,0 +1,249 @@ +{ + "task": "mitochondria", + "target": "drosophila-vnc", + "variant": "mtda", + "budget": 10.0, + "seed": 2, + "epochs": 15, + "steps_per_epoch": 86, + "labeled_patches": 68, + "train_pool": 686, + "sources": [ + "lucchi-pp" + ], + "args": { + "macs_repo": "/mnt/sdc1/connectomics/MACS-2", + "method": "mtda", + "source": "lucchi-pp", + "task": "mitochondria", + "target": "drosophila-vnc", + "budget": 10.0, + "seed": 2, + "epochs": 15, + "max_steps": 400, + "bs": 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budget of train labels; val: logged only (no selection, final model); test: evaluation only", + "gpu": "NVIDIA GeForce RTX 3070", + "torch": "2.5.1+cu118" +} \ No newline at end of file diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/fly-brain-mito-benchmark/mldb_e15_b0_s2/log.txt b/baselines/adapt/bayzid-system-2/runs/mitochondria/fly-brain-mito-benchmark/mldb_e15_b0_s2/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..8beeaf57403af80c895a9aaa25a621c9c369a75b --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/fly-brain-mito-benchmark/mldb_e15_b0_s2/log.txt @@ -0,0 +1,17 @@ +[14:31:07][ 0s] START mldb target=fly-brain-mito-benchmark task=mitochondria budget=0% (0/180 labeled) seed=2 epochs=15 x 23 steps | sources (1): lucchi-pp | val 38 test 38 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[14:31:18][ 11s] epoch 1/15 loss 0.2647 seg_src 0.2576 dom 0.3074 seg_tgt 0.0000 grl 0.05 +[14:31:27][ 21s] epoch 2/15 loss 0.1783 seg_src 0.1351 dom 0.3840 seg_tgt 0.0000 grl 0.34 +[14:31:37][ 30s] epoch 3/15 loss 0.2239 seg_src 0.1194 dom 0.2915 seg_tgt 0.0000 grl 0.61 +[14:31:46][ 40s] epoch 4/15 loss 0.2991 seg_src 0.1144 dom 0.2417 seg_tgt 0.0000 grl 0.79 +[14:31:56][ 50s] epoch 5/15 loss 0.3069 seg_src 0.1075 dom 0.2020 seg_tgt 0.0000 grl 0.89 val_dice 0.1873 +[14:32:06][ 59s] epoch 6/15 loss 0.2721 seg_src 0.0961 dom 0.1760 seg_tgt 0.0000 grl 0.95 +[14:32:15][ 68s] epoch 7/15 loss 0.2578 seg_src 0.0946 dom 0.1633 seg_tgt 0.0000 grl 0.97 +[14:32:24][ 78s] epoch 8/15 loss 0.2492 seg_src 0.0905 dom 0.1587 seg_tgt 0.0000 grl 0.99 +[14:32:34][ 87s] epoch 9/15 loss 0.2334 seg_src 0.0780 dom 0.1554 seg_tgt 0.0000 grl 0.99 +[14:32:44][ 97s] epoch 10/15 loss 0.2237 seg_src 0.0772 dom 0.1465 seg_tgt 0.0000 grl 1.00 val_dice 0.2167 | TEST patch_dice 0.2257 image_dice 0.2257 +[14:32:53][ 106s] epoch 11/15 loss 0.2050 seg_src 0.0677 dom 0.1373 seg_tgt 0.0000 grl 1.00 +[14:33:02][ 116s] epoch 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38 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[03:59:35][ 20s] epoch 1/15 loss 0.3443 seg_src 0.3409 dom 0.1526 seg_tgt 0.0000 grl 0.05 +[03:59:45][ 30s] epoch 2/15 loss 0.1793 seg_src 0.1548 dom 0.2092 seg_tgt 0.0000 grl 0.34 +[03:59:56][ 41s] epoch 3/15 loss 0.2565 seg_src 0.1541 dom 0.2720 seg_tgt 0.0000 grl 0.61 +[04:00:06][ 51s] epoch 4/15 loss 0.3413 seg_src 0.1321 dom 0.2750 seg_tgt 0.0000 grl 0.79 +[04:00:18][ 63s] epoch 5/15 loss 0.3798 seg_src 0.1332 dom 0.2495 seg_tgt 0.0000 grl 0.89 val_dice 0.1814 +[04:00:29][ 74s] epoch 6/15 loss 0.3626 seg_src 0.1239 dom 0.2388 seg_tgt 0.0000 grl 0.95 +[04:00:39][ 84s] epoch 7/15 loss 0.3173 seg_src 0.1118 dom 0.2055 seg_tgt 0.0000 grl 0.97 +[04:00:50][ 95s] epoch 8/15 loss 0.3034 seg_src 0.1088 dom 0.1945 seg_tgt 0.0000 grl 0.99 +[04:01:00][ 105s] epoch 9/15 loss 0.2878 seg_src 0.0996 dom 0.1882 seg_tgt 0.0000 grl 0.99 +[04:01:17][ 122s] epoch 10/15 loss 0.2660 seg_src 0.0948 dom 0.1712 seg_tgt 0.0000 grl 1.00 val_dice 0.1819 | TEST patch_dice 0.2133 image_dice 0.2133 +[04:01:28][ 133s] epoch 11/15 loss 0.2544 seg_src 0.0809 dom 0.1734 seg_tgt 0.0000 grl 1.00 +[04:01:38][ 143s] epoch 12/15 loss 0.2525 seg_src 0.0937 dom 0.1588 seg_tgt 0.0000 grl 1.00 +[04:01:49][ 154s] epoch 13/15 loss 0.2344 seg_src 0.0810 dom 0.1534 seg_tgt 0.0000 grl 1.00 +[04:02:00][ 165s] epoch 14/15 loss 0.2266 seg_src 0.0744 dom 0.1521 seg_tgt 0.0000 grl 1.00 +[04:02:15][ 180s] epoch 15/15 loss 0.2099 seg_src 0.0690 dom 0.1408 seg_tgt 0.0000 grl 1.00 val_dice 0.1734 | TEST patch_dice 0.2134 image_dice 0.2134 +[04:02:16][ 181s] DONE test patch_dice 0.2134 image_dice 0.2134 patch_vi 0.4445 | cyclegan 0.0 min, train 2.9 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/fly-brain-mito-benchmark/mldb_e15_b0_s3/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/fly-brain-mito-benchmark/mldb_e15_b0_s3/result.json new file mode 100644 index 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b/baselines/adapt/bayzid-system-2/runs/mitochondria/fly-brain-mito-benchmark/mtda_e15_b0_s2/log.txt @@ -0,0 +1,17 @@ +[14:29:20][ 0s] START mtda target=fly-brain-mito-benchmark task=mitochondria budget=0% (0/180 labeled) seed=2 epochs=15 x 23 steps | sources (1): lucchi-pp | val 38 test 38 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[14:29:28][ 9s] epoch 1/15 loss 0.3022 seg_src 0.3001 dom 0.0767 seg_tgt 0.0000 grl 0.05 +[14:29:35][ 15s] epoch 2/15 loss 0.1632 seg_src 0.1465 dom 0.1436 seg_tgt 0.0000 grl 0.34 +[14:29:41][ 22s] epoch 3/15 loss 0.1732 seg_src 0.1273 dom 0.1248 seg_tgt 0.0000 grl 0.61 +[14:29:48][ 28s] epoch 4/15 loss 0.1751 seg_src 0.1116 dom 0.0844 seg_tgt 0.0000 grl 0.79 +[14:29:55][ 36s] epoch 5/15 loss 0.1663 seg_src 0.0948 dom 0.0723 seg_tgt 0.0000 grl 0.89 val_dice 0.0446 +[14:30:02][ 42s] epoch 6/15 loss 0.1666 seg_src 0.0905 dom 0.0760 seg_tgt 0.0000 grl 0.95 +[14:30:08][ 49s] epoch 7/15 loss 0.1640 seg_src 0.0907 dom 0.0733 seg_tgt 0.0000 grl 0.97 +[14:30:15][ 56s] epoch 8/15 loss 0.1588 seg_src 0.0876 dom 0.0711 seg_tgt 0.0000 grl 0.99 +[14:30:22][ 62s] epoch 9/15 loss 0.1523 seg_src 0.0868 dom 0.0654 seg_tgt 0.0000 grl 0.99 +[14:30:29][ 70s] epoch 10/15 loss 0.1411 seg_src 0.0845 dom 0.0567 seg_tgt 0.0000 grl 1.00 val_dice 0.0574 | TEST patch_dice 0.0127 image_dice 0.0127 +[14:30:36][ 77s] epoch 11/15 loss 0.1304 seg_src 0.0779 dom 0.0525 seg_tgt 0.0000 grl 1.00 +[14:30:43][ 83s] epoch 12/15 loss 0.1218 seg_src 0.0760 dom 0.0458 seg_tgt 0.0000 grl 1.00 +[14:30:49][ 90s] epoch 13/15 loss 0.1131 seg_src 0.0709 dom 0.0422 seg_tgt 0.0000 grl 1.00 +[14:30:56][ 97s] epoch 14/15 loss 0.1085 seg_src 0.0694 dom 0.0391 seg_tgt 0.0000 grl 1.00 +[14:31:04][ 104s] epoch 15/15 loss 0.1068 seg_src 0.0701 dom 0.0367 seg_tgt 0.0000 grl 1.00 val_dice 0.1987 | TEST patch_dice 0.2846 image_dice 0.2846 +[14:31:04][ 105s] DONE test patch_dice 0.2846 image_dice 0.2846 patch_vi 0.9269 | cyclegan 0.0 min, train 1.7 min diff 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b/baselines/adapt/bayzid-system-2/runs/mitochondria/fly-brain-mito-benchmark/mtda_e15_b100_s2/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..feeb9877fb45f4404a32dc567b04549760a69b60 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/fly-brain-mito-benchmark/mtda_e15_b100_s2/log.txt @@ -0,0 +1,17 @@ +[14:26:48][ 1s] START mtda target=fly-brain-mito-benchmark task=mitochondria budget=100% (180/180 labeled) seed=2 epochs=15 x 23 steps | sources (1): lucchi-pp | val 38 test 38 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[14:27:00][ 14s] epoch 1/15 loss 0.7798 seg_src 0.3895 dom 0.1021 seg_tgt 0.3875 grl 0.05 +[14:27:10][ 23s] epoch 2/15 loss 0.4497 seg_src 0.2308 dom 0.2139 seg_tgt 0.1941 grl 0.34 +[14:27:19][ 32s] epoch 3/15 loss 0.4461 seg_src 0.2055 dom 0.2385 seg_tgt 0.1510 grl 0.61 +[14:27:28][ 42s] epoch 4/15 loss 0.4809 seg_src 0.1911 dom 0.1910 seg_tgt 0.1472 grl 0.79 +[14:27:40][ 53s] epoch 5/15 loss 0.4216 seg_src 0.1824 dom 0.1084 seg_tgt 0.1321 grl 0.89 val_dice 0.8732 +[14:27:49][ 62s] epoch 6/15 loss 0.3571 seg_src 0.1471 dom 0.0989 seg_tgt 0.1111 grl 0.95 +[14:27:58][ 72s] epoch 7/15 loss 0.3343 seg_src 0.1349 dom 0.1009 seg_tgt 0.0985 grl 0.97 +[14:28:08][ 81s] epoch 8/15 loss 0.3265 seg_src 0.1248 dom 0.1054 seg_tgt 0.0964 grl 0.99 +[14:28:17][ 91s] epoch 9/15 loss 0.3029 seg_src 0.1102 dom 0.1044 seg_tgt 0.0882 grl 0.99 +[14:28:29][ 102s] epoch 10/15 loss 0.2916 seg_src 0.1070 dom 0.1054 seg_tgt 0.0792 grl 1.00 val_dice 0.9035 | TEST patch_dice 0.9005 image_dice 0.9005 +[14:28:38][ 111s] epoch 11/15 loss 0.2783 seg_src 0.0976 dom 0.1058 seg_tgt 0.0749 grl 1.00 +[14:28:47][ 121s] epoch 12/15 loss 0.2780 seg_src 0.1000 dom 0.1074 seg_tgt 0.0706 grl 1.00 +[14:28:57][ 130s] epoch 13/15 loss 0.2598 seg_src 0.0835 dom 0.1088 seg_tgt 0.0675 grl 1.00 +[14:29:06][ 140s] epoch 14/15 loss 0.2561 seg_src 0.0818 dom 0.1117 seg_tgt 0.0626 grl 1.00 +[14:29:17][ 150s] epoch 15/15 loss 0.2491 seg_src 0.0774 dom 0.1118 seg_tgt 0.0599 grl 1.00 val_dice 0.9088 | TEST patch_dice 0.9119 image_dice 0.9119 +[14:29:17][ 151s] DONE test patch_dice 0.9119 image_dice 0.9119 patch_vi 0.1564 | cyclegan 0.0 min, train 2.5 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/fly-brain-mito-benchmark/mtda_e15_b100_s2/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/fly-brain-mito-benchmark/mtda_e15_b100_s2/result.json new file mode 100644 index 0000000000000000000000000000000000000000..f3abe0c106fbc47d6411577f8b4b65938d9c3e22 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/fly-brain-mito-benchmark/mtda_e15_b100_s2/result.json @@ -0,0 +1,249 @@ +{ + "task": "mitochondria", + "target": "fly-brain-mito-benchmark", + "variant": "mtda", + "budget": 100.0, + "seed": 2, + "epochs": 15, + "steps_per_epoch": 23, + "labeled_patches": 180, + "train_pool": 180, + "sources": [ + "lucchi-pp" + ], + "args": { + "macs_repo": 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(1): lucchi-pp | val 38 test 38 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[02:03:29][ 29s] epoch 1/15 loss 0.9822 seg_src 0.4925 dom 0.0726 seg_tgt 0.4877 grl 0.05 +[02:03:40][ 40s] epoch 2/15 loss 0.5447 seg_src 0.2906 dom 0.1662 seg_tgt 0.2348 grl 0.34 +[02:03:51][ 51s] epoch 3/15 loss 0.5701 seg_src 0.2927 dom 0.1862 seg_tgt 0.2082 grl 0.61 +[02:04:02][ 62s] epoch 4/15 loss 0.6072 seg_src 0.2522 dom 0.1961 seg_tgt 0.2055 grl 0.79 +[02:04:17][ 77s] epoch 5/15 loss 0.5531 seg_src 0.2421 dom 0.1295 seg_tgt 0.1833 grl 0.89 val_dice 0.8199 +[02:04:28][ 88s] epoch 6/15 loss 0.4927 seg_src 0.2321 dom 0.1000 seg_tgt 0.1607 grl 0.95 +[02:04:40][ 100s] epoch 7/15 loss 0.4346 seg_src 0.1930 dom 0.0925 seg_tgt 0.1491 grl 0.97 +[02:04:50][ 110s] epoch 8/15 loss 0.4195 seg_src 0.1971 dom 0.0893 seg_tgt 0.1330 grl 0.99 +[02:05:01][ 121s] epoch 9/15 loss 0.3913 seg_src 0.1769 dom 0.0899 seg_tgt 0.1245 grl 0.99 +[02:05:18][ 138s] epoch 10/15 loss 0.3660 seg_src 0.1565 dom 0.0903 seg_tgt 0.1192 grl 1.00 val_dice 0.8853 | TEST patch_dice 0.8974 image_dice 0.8974 +[02:05:29][ 149s] epoch 11/15 loss 0.3439 seg_src 0.1379 dom 0.0922 seg_tgt 0.1138 grl 1.00 +[02:05:40][ 160s] epoch 12/15 loss 0.3439 seg_src 0.1455 dom 0.0926 seg_tgt 0.1059 grl 1.00 +[02:05:51][ 171s] epoch 13/15 loss 0.3247 seg_src 0.1302 dom 0.0928 seg_tgt 0.1017 grl 1.00 +[02:06:03][ 183s] epoch 14/15 loss 0.3145 seg_src 0.1232 dom 0.0942 seg_tgt 0.0971 grl 1.00 +[02:06:18][ 198s] epoch 15/15 loss 0.2974 seg_src 0.1126 dom 0.0937 seg_tgt 0.0912 grl 1.00 val_dice 0.9137 | TEST patch_dice 0.9206 image_dice 0.9206 +[02:06:20][ 200s] DONE test patch_dice 0.9206 image_dice 0.9206 patch_vi 0.1625 | cyclegan 0.0 min, train 3.1 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/fly-brain-mito-benchmark/mtda_e15_b100_s3/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/fly-brain-mito-benchmark/mtda_e15_b100_s3/result.json new file mode 100644 index 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b/baselines/adapt/bayzid-system-2/runs/mitochondria/fly-brain-mito-benchmark/mtda_e15_b10_s2/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..7566b50a7ccdb4eb3ac25d6759a801be2694ad4b --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/fly-brain-mito-benchmark/mtda_e15_b10_s2/log.txt @@ -0,0 +1,17 @@ +[16:09:46][ 0s] START mtda target=fly-brain-mito-benchmark task=mitochondria budget=10% (18/180 labeled) seed=2 epochs=15 x 23 steps | sources (1): lucchi-pp | val 38 test 38 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[16:09:57][ 11s] epoch 1/15 loss 0.7677 seg_src 0.3921 dom 0.0934 seg_tgt 0.3729 grl 0.05 +[16:10:07][ 20s] epoch 2/15 loss 0.4360 seg_src 0.2219 dom 0.1991 seg_tgt 0.1910 grl 0.34 +[16:10:16][ 29s] epoch 3/15 loss 0.4237 seg_src 0.2030 dom 0.2200 seg_tgt 0.1380 grl 0.61 +[16:10:25][ 39s] epoch 4/15 loss 0.4781 seg_src 0.1895 dom 0.2088 seg_tgt 0.1306 grl 0.79 +[16:10:35][ 49s] epoch 5/15 loss 0.4414 seg_src 0.1922 dom 0.1265 seg_tgt 0.1243 grl 0.89 val_dice 0.8299 +[16:10:44][ 58s] epoch 6/15 loss 0.3567 seg_src 0.1524 dom 0.1004 seg_tgt 0.1039 grl 0.95 +[16:10:53][ 67s] epoch 7/15 loss 0.3318 seg_src 0.1417 dom 0.1004 seg_tgt 0.0897 grl 0.97 +[16:11:02][ 76s] epoch 8/15 loss 0.3112 seg_src 0.1274 dom 0.1025 seg_tgt 0.0814 grl 0.99 +[16:11:11][ 85s] epoch 9/15 loss 0.2850 seg_src 0.1118 dom 0.1019 seg_tgt 0.0713 grl 0.99 +[16:11:22][ 96s] epoch 10/15 loss 0.2769 seg_src 0.1072 dom 0.1014 seg_tgt 0.0683 grl 1.00 val_dice 0.8715 | TEST patch_dice 0.8909 image_dice 0.8909 +[16:11:31][ 105s] epoch 11/15 loss 0.2645 seg_src 0.0993 dom 0.1004 seg_tgt 0.0648 grl 1.00 +[16:11:40][ 114s] epoch 12/15 loss 0.2559 seg_src 0.0987 dom 0.0998 seg_tgt 0.0574 grl 1.00 +[16:11:49][ 123s] epoch 13/15 loss 0.2411 seg_src 0.0884 dom 0.0933 seg_tgt 0.0594 grl 1.00 +[16:11:58][ 132s] epoch 14/15 loss 0.2320 seg_src 0.0898 dom 0.0844 seg_tgt 0.0577 grl 1.00 +[16:12:09][ 143s] epoch 15/15 loss 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lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[19:34:07][ 170s] epoch 1/15 loss 0.0883 seg_src 0.0792 dom 0.4442 seg_tgt 0.0000 grl 0.05 +[19:36:55][ 339s] epoch 2/15 loss 0.0432 seg_src 0.0249 dom 0.1782 seg_tgt 0.0000 grl 0.34 +[19:39:44][ 507s] epoch 3/15 loss 0.0585 seg_src 0.0201 dom 0.1028 seg_tgt 0.0000 grl 0.61 +[19:42:32][ 675s] epoch 4/15 loss 0.0898 seg_src 0.0219 dom 0.0884 seg_tgt 0.0000 grl 0.79 +[19:45:33][ 857s] epoch 5/15 loss 0.0805 seg_src 0.0158 dom 0.0655 seg_tgt 0.0000 grl 0.89 val_dice 0.4856 +[19:48:21][ 1025s] epoch 6/15 loss 0.0740 seg_src 0.0128 dom 0.0611 seg_tgt 0.0000 grl 0.95 +[19:51:10][ 1193s] epoch 7/15 loss 0.0692 seg_src 0.0116 dom 0.0577 seg_tgt 0.0000 grl 0.97 +[19:53:59][ 1362s] epoch 8/15 loss 0.0626 seg_src 0.0107 dom 0.0519 seg_tgt 0.0000 grl 0.99 +[19:56:47][ 1530s] epoch 9/15 loss 0.0581 seg_src 0.0097 dom 0.0484 seg_tgt 0.0000 grl 0.99 +[20:00:02][ 1726s] epoch 10/15 loss 0.0533 seg_src 0.0088 dom 0.0445 seg_tgt 0.0000 grl 1.00 val_dice 0.7593 | TEST patch_dice 0.7158 image_dice 0.8702 +[20:02:51][ 1894s] epoch 11/15 loss 0.0503 seg_src 0.0077 dom 0.0427 seg_tgt 0.0000 grl 1.00 +[20:05:39][ 2062s] epoch 12/15 loss 0.0533 seg_src 0.0083 dom 0.0450 seg_tgt 0.0000 grl 1.00 +[20:08:27][ 2230s] epoch 13/15 loss 0.0489 seg_src 0.0069 dom 0.0420 seg_tgt 0.0000 grl 1.00 +[20:11:15][ 2399s] epoch 14/15 loss 0.0486 seg_src 0.0065 dom 0.0421 seg_tgt 0.0000 grl 1.00 +[20:14:29][ 2593s] epoch 15/15 loss 0.0513 seg_src 0.0066 dom 0.0447 seg_tgt 0.0000 grl 1.00 val_dice 0.6973 | TEST patch_dice 0.6880 image_dice 0.8235 +[20:14:30][ 2593s] DONE test patch_dice 0.6880 image_dice 0.8235 patch_vi 0.0697 | cyclegan 0.0 min, train 43.2 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/kasthuri-pp/mldb_e15_b0_s2/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/kasthuri-pp/mldb_e15_b0_s2/result.json new file mode 100644 index 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b/baselines/adapt/bayzid-system-2/runs/mitochondria/kasthuri-pp/mldb_e15_b10_s3/log.txt @@ -0,0 +1 @@ +[04:03:14][ 0s] START mldb target=kasthuri-pp task=mitochondria budget=10% (1202/12023 labeled) seed=3 epochs=15 x 400 steps | sources (1): drosophila-vnc | val 2376 test 2376 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/kasthuri-pp/mtda_e15_b0_s2/log.txt b/baselines/adapt/bayzid-system-2/runs/mitochondria/kasthuri-pp/mtda_e15_b0_s2/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..786cde044bc7a5eff2500f5f949ab6d6846dcf0f --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/kasthuri-pp/mtda_e15_b0_s2/log.txt @@ -0,0 +1,25 @@ +[18:40:34][ 0s] START mtda target=kasthuri-pp task=mitochondria budget=0% (0/12023 labeled) seed=2 epochs=15 x 400 steps | sources (1): drosophila-vnc | val 2376 test 2376 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[18:42:37][ 123s] epoch 1/15 loss 0.1027 seg_src 0.0995 dom 0.1521 seg_tgt 0.0000 grl 0.05 +[18:44:40][ 245s] epoch 2/15 loss 0.0414 seg_src 0.0288 dom 0.1120 seg_tgt 0.0000 grl 0.34 +[18:46:41][ 367s] epoch 3/15 loss 0.0395 seg_src 0.0272 dom 0.0360 seg_tgt 0.0000 grl 0.61 +[18:48:43][ 489s] epoch 4/15 loss 0.0314 seg_src 0.0207 dom 0.0144 seg_tgt 0.0000 grl 0.79 +[18:50:58][ 624s] epoch 5/15 loss 0.0208 seg_src 0.0136 dom 0.0073 seg_tgt 0.0000 grl 0.89 val_dice 0.4775 +[18:53:00][ 745s] epoch 6/15 loss 0.0170 seg_src 0.0108 dom 0.0062 seg_tgt 0.0000 grl 0.95 +[18:55:04][ 869s] epoch 7/15 loss 0.0126 seg_src 0.0077 dom 0.0049 seg_tgt 0.0000 grl 0.97 +[18:59:43][ 3s] START mtda target=kasthuri-pp task=mitochondria budget=0% (0/12023 labeled) seed=2 epochs=15 x 400 steps | sources (1): drosophila-vnc | val 2376 test 2376 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[19:01:48][ 128s] epoch 1/15 loss 0.1027 seg_src 0.0995 dom 0.1521 seg_tgt 0.0000 grl 0.05 +[19:03:49][ 249s] epoch 2/15 loss 0.0414 seg_src 0.0288 dom 0.1120 seg_tgt 0.0000 grl 0.34 +[19:05:50][ 370s] epoch 3/15 loss 0.0395 seg_src 0.0272 dom 0.0360 seg_tgt 0.0000 grl 0.61 +[19:07:52][ 492s] epoch 4/15 loss 0.0314 seg_src 0.0207 dom 0.0144 seg_tgt 0.0000 grl 0.79 +[19:10:07][ 627s] epoch 5/15 loss 0.0208 seg_src 0.0136 dom 0.0073 seg_tgt 0.0000 grl 0.89 val_dice 0.4775 +[19:12:09][ 749s] epoch 6/15 loss 0.0170 seg_src 0.0108 dom 0.0062 seg_tgt 0.0000 grl 0.95 +[19:14:10][ 870s] epoch 7/15 loss 0.0126 seg_src 0.0077 dom 0.0049 seg_tgt 0.0000 grl 0.97 +[19:16:11][ 991s] epoch 8/15 loss 0.0112 seg_src 0.0061 dom 0.0052 seg_tgt 0.0000 grl 0.99 +[19:18:12][ 1112s] epoch 9/15 loss 0.0082 seg_src 0.0041 dom 0.0041 seg_tgt 0.0000 grl 0.99 +[19:20:40][ 1260s] epoch 10/15 loss 0.0148 seg_src 0.0096 dom 0.0052 seg_tgt 0.0000 grl 1.00 val_dice 0.4783 | TEST patch_dice 0.5312 image_dice 0.4513 +[19:22:41][ 1381s] epoch 11/15 loss 0.0062 seg_src 0.0035 dom 0.0027 seg_tgt 0.0000 grl 1.00 +[19:24:43][ 1503s] epoch 12/15 loss 0.0060 seg_src 0.0029 dom 0.0031 seg_tgt 0.0000 grl 1.00 +[19:26:44][ 1624s] epoch 13/15 loss 0.0054 seg_src 0.0024 dom 0.0030 seg_tgt 0.0000 grl 1.00 +[19:28:45][ 1745s] epoch 14/15 loss 0.0060 seg_src 0.0028 dom 0.0032 seg_tgt 0.0000 grl 1.00 +[19:31:13][ 1893s] epoch 15/15 loss 0.0065 seg_src 0.0032 dom 0.0033 seg_tgt 0.0000 grl 1.00 val_dice 0.2857 | TEST patch_dice 0.3873 image_dice 0.2587 +[19:31:14][ 1894s] DONE test patch_dice 0.3873 image_dice 0.2587 patch_vi 0.1995 | cyclegan 0.0 min, train 31.5 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/kasthuri-pp/mtda_e15_b0_s2/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/kasthuri-pp/mtda_e15_b0_s2/result.json new file mode 100644 index 0000000000000000000000000000000000000000..4c76062cc087dc2ac74a9e7cd02fef8b481cec46 --- /dev/null +++ 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mtda target=kasthuri-pp task=mitochondria budget=100% (12023/12023 labeled) seed=2 epochs=15 x 400 steps | sources (1): drosophila-vnc | val 2376 test 2376 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[17:59:54][ 173s] epoch 1/15 loss 0.3499 seg_src 0.1801 dom 0.3137 seg_tgt 0.1623 grl 0.05 +[18:02:43][ 342s] epoch 2/15 loss 0.1352 seg_src 0.0589 dom 0.1692 seg_tgt 0.0590 grl 0.34 +[18:05:32][ 511s] epoch 3/15 loss 0.1125 seg_src 0.0405 dom 0.0907 seg_tgt 0.0408 grl 0.61 +[18:08:21][ 680s] epoch 4/15 loss 0.0677 seg_src 0.0282 dom 0.0142 seg_tgt 0.0289 grl 0.79 +[18:11:24][ 863s] epoch 5/15 loss 0.0500 seg_src 0.0206 dom 0.0083 seg_tgt 0.0212 grl 0.89 val_dice 0.8507 +[18:14:13][ 1032s] epoch 6/15 loss 0.0395 seg_src 0.0167 dom 0.0065 seg_tgt 0.0163 grl 0.95 +[18:17:02][ 1201s] epoch 7/15 loss 0.0316 seg_src 0.0129 dom 0.0055 seg_tgt 0.0133 grl 0.97 +[18:19:52][ 1371s] epoch 8/15 loss 0.0287 seg_src 0.0128 dom 0.0039 seg_tgt 0.0120 grl 0.99 +[18:22:42][ 1541s] epoch 9/15 loss 0.0263 seg_src 0.0119 dom 0.0036 seg_tgt 0.0107 grl 0.99 +[18:25:58][ 1738s] epoch 10/15 loss 0.0207 seg_src 0.0084 dom 0.0028 seg_tgt 0.0095 grl 1.00 val_dice 0.8896 | TEST patch_dice 0.8140 image_dice 0.9421 +[18:28:48][ 1907s] epoch 11/15 loss 0.0172 seg_src 0.0067 dom 0.0025 seg_tgt 0.0079 grl 1.00 +[18:31:37][ 2076s] epoch 12/15 loss 0.0180 seg_src 0.0073 dom 0.0025 seg_tgt 0.0082 grl 1.00 +[18:34:26][ 2246s] epoch 13/15 loss 0.0162 seg_src 0.0066 dom 0.0022 seg_tgt 0.0074 grl 1.00 +[18:37:16][ 2415s] epoch 14/15 loss 0.0197 seg_src 0.0088 dom 0.0025 seg_tgt 0.0084 grl 1.00 +[18:40:31][ 2611s] epoch 15/15 loss 0.0161 seg_src 0.0065 dom 0.0018 seg_tgt 0.0077 grl 1.00 val_dice 0.8955 | TEST patch_dice 0.8532 image_dice 0.9479 +[18:40:32][ 2611s] DONE test patch_dice 0.8532 image_dice 0.9479 patch_vi 0.0266 | cyclegan 0.0 min, train 43.5 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/kasthuri-pp/mtda_e15_b100_s2/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/kasthuri-pp/mtda_e15_b100_s2/result.json new file mode 100644 index 0000000000000000000000000000000000000000..d2eb24e4ba99ec02c0056deb9d00b9d71c73bf95 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/kasthuri-pp/mtda_e15_b100_s2/result.json @@ -0,0 +1,249 @@ +{ + "task": "mitochondria", + "target": "kasthuri-pp", + "variant": "mtda", + "budget": 100.0, + "seed": 2, + "epochs": 15, + "steps_per_epoch": 400, + "labeled_patches": 12023, + "train_pool": 12023, + "sources": [ + "drosophila-vnc" + ], + "args": { + "macs_repo": "/mnt/sdc1/connectomics/MACS-2", + "method": "mtda", + "source": "drosophila-vnc", + "task": "mitochondria", + "target": "kasthuri-pp", + "budget": 100.0, + "seed": 2, + "epochs": 15, + "max_steps": 400, + "bs": 8, + "src_bs": 8, + "lr": 0.0001, + "gamma": 10.0, + "mu": 0.1, + "gan_iters": 1500, + "gan_bs": 4, + "ngf": 32, + "sem_weight": 1.0, + "ema": 0.99, + "cons_weight": 1.0, + "mask_ratio": 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"torch": "2.5.1+cu118" +} \ No newline at end of file diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/kasthuri-pp/mtda_e15_b10_s2/log.txt b/baselines/adapt/bayzid-system-2/runs/mitochondria/kasthuri-pp/mtda_e15_b10_s2/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..32b38e2edeac74f8dc205f91a010caf95c9a6db0 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/kasthuri-pp/mtda_e15_b10_s2/log.txt @@ -0,0 +1,23 @@ +[23:41:59][ 1s] START mtda target=kasthuri-pp task=mitochondria budget=10% (1202/12023 labeled) seed=2 epochs=15 x 400 steps | sources (1): drosophila-vnc | val 2376 test 2376 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[23:45:17][ 199s] epoch 1/15 loss 0.3444 seg_src 0.1777 dom 0.3206 seg_tgt 0.1591 grl 0.05 +[23:48:27][ 389s] epoch 2/15 loss 0.1426 seg_src 0.0626 dom 0.1723 seg_tgt 0.0615 grl 0.34 +[23:51:38][ 579s] epoch 3/15 loss 0.1134 seg_src 0.0388 dom 0.1012 seg_tgt 0.0395 grl 0.61 +[23:54:49][ 771s] epoch 4/15 loss 0.0693 seg_src 0.0286 dom 0.0166 seg_tgt 0.0286 grl 0.79 +[23:58:15][ 976s] epoch 5/15 loss 0.0477 seg_src 0.0206 dom 0.0083 seg_tgt 0.0188 grl 0.89 val_dice 0.8694 +[00:03:10][ 3s] START mtda target=kasthuri-pp task=mitochondria budget=10% (1202/12023 labeled) seed=2 epochs=15 x 400 steps | sources (1): drosophila-vnc | val 2376 test 2376 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[00:06:06][ 179s] epoch 1/15 loss 0.3444 seg_src 0.1777 dom 0.3206 seg_tgt 0.1591 grl 0.05 +[00:08:55][ 348s] epoch 2/15 loss 0.1426 seg_src 0.0626 dom 0.1723 seg_tgt 0.0615 grl 0.34 +[00:11:55][ 527s] epoch 3/15 loss 0.1134 seg_src 0.0388 dom 0.1012 seg_tgt 0.0395 grl 0.61 +[00:15:01][ 713s] epoch 4/15 loss 0.0693 seg_src 0.0286 dom 0.0166 seg_tgt 0.0286 grl 0.79 +[00:18:21][ 913s] epoch 5/15 loss 0.0477 seg_src 0.0206 dom 0.0083 seg_tgt 0.0188 grl 0.89 val_dice 0.8694 +[00:21:19][ 1092s] epoch 6/15 loss 0.0377 seg_src 0.0168 dom 0.0064 seg_tgt 0.0145 grl 0.95 +[00:24:23][ 1276s] epoch 7/15 loss 0.0290 seg_src 0.0130 dom 0.0049 seg_tgt 0.0111 grl 0.97 +[00:27:27][ 1459s] epoch 8/15 loss 0.0269 seg_src 0.0123 dom 0.0048 seg_tgt 0.0098 grl 0.99 +[00:30:28][ 1640s] epoch 9/15 loss 0.0250 seg_src 0.0117 dom 0.0041 seg_tgt 0.0092 grl 0.99 +[00:34:08][ 1860s] epoch 10/15 loss 0.0167 seg_src 0.0073 dom 0.0031 seg_tgt 0.0063 grl 1.00 val_dice 0.8719 | TEST patch_dice 0.8252 image_dice 0.9458 +[00:37:11][ 2044s] epoch 11/15 loss 0.0139 seg_src 0.0058 dom 0.0027 seg_tgt 0.0054 grl 1.00 +[00:40:14][ 2226s] epoch 12/15 loss 0.0185 seg_src 0.0084 dom 0.0033 seg_tgt 0.0068 grl 1.00 +[00:43:17][ 2410s] epoch 13/15 loss 0.0169 seg_src 0.0074 dom 0.0028 seg_tgt 0.0066 grl 1.00 +[00:46:22][ 2595s] epoch 14/15 loss 0.0121 seg_src 0.0044 dom 0.0031 seg_tgt 0.0045 grl 1.00 +[00:50:00][ 2812s] epoch 15/15 loss 0.0102 seg_src 0.0037 dom 0.0024 seg_tgt 0.0040 grl 1.00 val_dice 0.8855 | TEST patch_dice 0.8540 image_dice 0.9478 +[00:50:02][ 2815s] DONE test patch_dice 0.8540 image_dice 0.9478 patch_vi 0.0269 | cyclegan 0.0 min, train 46.8 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/kasthuri-pp/mtda_e15_b10_s2/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/kasthuri-pp/mtda_e15_b10_s2/result.json new file mode 100644 index 0000000000000000000000000000000000000000..f385f59340c2d27f2edc1cf61f970de864a265c3 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/kasthuri-pp/mtda_e15_b10_s2/result.json @@ -0,0 +1,249 @@ +{ + "task": "mitochondria", + "target": "kasthuri-pp", + "variant": "mtda", + "budget": 10.0, + "seed": 2, + "epochs": 15, + "steps_per_epoch": 400, + "labeled_patches": 1202, + "train_pool": 12023, + "sources": [ + "drosophila-vnc" + ], + "args": { + "macs_repo": "/mnt/sdc1/connectomics/MACS-2", + "method": "mtda", + "source": "drosophila-vnc", + "task": "mitochondria", + "target": "kasthuri-pp", + "budget": 10.0, + "seed": 2, + "epochs": 15, + 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"data_access": "sources: labeled train patches; target: unlabeled train pool + random upfront budget of train labels; val: logged only (no selection, final model); test: evaluation only", + "gpu": "NVIDIA GeForce RTX 3070", + "torch": "2.5.1+cu118" +} \ No newline at end of file diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mldb_e15_b0_s2/log.txt b/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mldb_e15_b0_s2/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..b984b0882462ee567a4afc42826760e6ad913a89 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mldb_e15_b0_s2/log.txt @@ -0,0 +1,17 @@ +[21:28:38][ 0s] START mldb target=lucchi-pp task=mitochondria budget=0% (0/8050 labeled) seed=2 epochs=15 x 400 steps | sources (1): multiclass | val 1750 test 1750 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[21:31:27][ 169s] epoch 1/15 loss 0.1163 seg_src 0.1057 dom 0.5245 seg_tgt 0.0000 grl 0.05 +[21:34:14][ 337s] epoch 2/15 loss 0.0830 seg_src 0.0383 dom 0.3965 seg_tgt 0.0000 grl 0.34 +[21:37:03][ 505s] epoch 3/15 loss 0.1136 seg_src 0.0371 dom 0.2127 seg_tgt 0.0000 grl 0.61 +[21:39:50][ 672s] epoch 4/15 loss 0.1442 seg_src 0.0270 dom 0.1525 seg_tgt 0.0000 grl 0.79 +[21:42:49][ 852s] epoch 5/15 loss 0.1454 seg_src 0.0209 dom 0.1259 seg_tgt 0.0000 grl 0.89 val_dice 0.3418 +[21:45:38][ 1020s] epoch 6/15 loss 0.1248 seg_src 0.0165 dom 0.1083 seg_tgt 0.0000 grl 0.95 +[21:48:26][ 1188s] epoch 7/15 loss 0.1200 seg_src 0.0143 dom 0.1057 seg_tgt 0.0000 grl 0.97 +[21:51:17][ 1359s] epoch 8/15 loss 0.1106 seg_src 0.0128 dom 0.0978 seg_tgt 0.0000 grl 0.99 +[21:54:11][ 1533s] epoch 9/15 loss 0.1034 seg_src 0.0119 dom 0.0915 seg_tgt 0.0000 grl 0.99 +[21:57:20][ 1722s] epoch 10/15 loss 0.0955 seg_src 0.0111 dom 0.0844 seg_tgt 0.0000 grl 1.00 val_dice 0.6983 | TEST patch_dice 0.6720 image_dice 0.7460 +[22:00:09][ 1892s] epoch 11/15 loss 0.0905 seg_src 0.0105 dom 0.0800 seg_tgt 0.0000 grl 1.00 +[22:02:58][ 2060s] epoch 12/15 loss 0.0866 seg_src 0.0099 dom 0.0767 seg_tgt 0.0000 grl 1.00 +[22:05:46][ 2229s] epoch 13/15 loss 0.0854 seg_src 0.0096 dom 0.0757 seg_tgt 0.0000 grl 1.00 +[22:08:35][ 2397s] epoch 14/15 loss 0.0789 seg_src 0.0092 dom 0.0698 seg_tgt 0.0000 grl 1.00 +[22:11:43][ 2585s] epoch 15/15 loss 0.0826 seg_src 0.0092 dom 0.0734 seg_tgt 0.0000 grl 1.00 val_dice 0.6261 | TEST patch_dice 0.5656 image_dice 0.7174 +[22:11:43][ 2586s] DONE test patch_dice 0.5656 image_dice 0.7174 patch_vi 0.1490 | cyclegan 0.0 min, train 43.1 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mldb_e15_b0_s2/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mldb_e15_b0_s2/result.json new file mode 100644 index 0000000000000000000000000000000000000000..6a2f8199c0ed2068d422f54c50f015c4036e82e7 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mldb_e15_b0_s2/result.json @@ -0,0 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mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mtda_e15_b0_s2/log.txt b/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mtda_e15_b0_s2/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..9b668c8598c02897f3c33dcabafe24cc86bb5938 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mtda_e15_b0_s2/log.txt @@ -0,0 +1,17 @@ +[20:57:49][ 0s] START mtda target=lucchi-pp task=mitochondria budget=0% (0/8050 labeled) seed=2 epochs=15 x 400 steps | sources (1): multiclass | val 1750 test 1750 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[20:59:50][ 121s] epoch 1/15 loss 0.0922 seg_src 0.0889 dom 0.1597 seg_tgt 0.0000 grl 0.05 +[21:01:50][ 241s] epoch 2/15 loss 0.0388 seg_src 0.0262 dom 0.1089 seg_tgt 0.0000 grl 0.34 +[21:03:50][ 361s] epoch 3/15 loss 0.0389 seg_src 0.0235 dom 0.0461 seg_tgt 0.0000 grl 0.61 +[21:05:49][ 480s] epoch 4/15 loss 0.0309 seg_src 0.0195 dom 0.0153 seg_tgt 0.0000 grl 0.79 +[21:07:58][ 610s] epoch 5/15 loss 0.0198 seg_src 0.0138 dom 0.0061 seg_tgt 0.0000 grl 0.89 val_dice 0.7700 +[21:09:58][ 729s] epoch 6/15 loss 0.0149 seg_src 0.0114 dom 0.0035 seg_tgt 0.0000 grl 0.95 +[21:11:58][ 849s] epoch 7/15 loss 0.0140 seg_src 0.0106 dom 0.0034 seg_tgt 0.0000 grl 0.97 +[21:13:58][ 969s] epoch 8/15 loss 0.0136 seg_src 0.0103 dom 0.0033 seg_tgt 0.0000 grl 0.99 +[21:15:58][ 1089s] epoch 9/15 loss 0.0111 seg_src 0.0088 dom 0.0023 seg_tgt 0.0000 grl 0.99 +[21:18:17][ 1229s] epoch 10/15 loss 0.0116 seg_src 0.0091 dom 0.0025 seg_tgt 0.0000 grl 1.00 val_dice 0.7908 | TEST patch_dice 0.8189 image_dice 0.9136 +[21:20:17][ 1348s] epoch 11/15 loss 0.0099 seg_src 0.0080 dom 0.0019 seg_tgt 0.0000 grl 1.00 +[21:22:16][ 1468s] epoch 12/15 loss 0.0094 seg_src 0.0075 dom 0.0019 seg_tgt 0.0000 grl 1.00 +[21:24:16][ 1587s] epoch 13/15 loss 0.0085 seg_src 0.0070 dom 0.0015 seg_tgt 0.0000 grl 1.00 +[21:26:16][ 1707s] epoch 14/15 loss 0.0080 seg_src 0.0066 dom 0.0015 seg_tgt 0.0000 grl 1.00 +[21:28:35][ 1846s] epoch 15/15 loss 0.0080 seg_src 0.0066 dom 0.0014 seg_tgt 0.0000 grl 1.00 val_dice 0.7859 | TEST patch_dice 0.8414 image_dice 0.9109 +[21:28:35][ 1847s] DONE test patch_dice 0.8414 image_dice 0.9109 patch_vi 0.0589 | cyclegan 0.0 min, train 30.8 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mtda_e15_b0_s2/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mtda_e15_b0_s2/result.json new file mode 100644 index 0000000000000000000000000000000000000000..92329ee0af0e6ec096914ef26aca0037ccc04d2e --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mtda_e15_b0_s2/result.json @@ -0,0 +1,249 @@ +{ + "task": "mitochondria", + "target": "lucchi-pp", + "variant": "mtda", + "budget": 0.0, + "seed": 2, + "epochs": 15, + "steps_per_epoch": 400, + "labeled_patches": 0, + "train_pool": 8050, + "sources": [ 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unlabeled train pool + random upfront budget of train labels; val: logged only (no selection, final model); test: evaluation only", + "gpu": "NVIDIA GeForce RTX 3070", + "torch": "2.5.1+cu118" +} \ No newline at end of file diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mtda_e15_b100_s2/log.txt b/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mtda_e15_b100_s2/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..6c8ce19bfc3559773f15a4184b18cdae712863a5 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mtda_e15_b100_s2/log.txt @@ -0,0 +1,17 @@ +[20:14:37][ 5s] START mtda target=lucchi-pp task=mitochondria budget=100% (8050/8050 labeled) seed=2 epochs=15 x 400 steps | sources (1): multiclass | val 1750 test 1750 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[20:17:32][ 180s] epoch 1/15 loss 0.2370 seg_src 0.1120 dom 0.2222 seg_tgt 0.1207 grl 0.05 +[20:20:19][ 347s] epoch 2/15 loss 0.1001 seg_src 0.0392 dom 0.1286 seg_tgt 0.0459 grl 0.34 +[20:23:07][ 515s] epoch 3/15 loss 0.1033 seg_src 0.0263 dom 0.1211 seg_tgt 0.0325 grl 0.61 +[20:25:55][ 683s] epoch 4/15 loss 0.0811 seg_src 0.0279 dom 0.0294 seg_tgt 0.0319 grl 0.79 +[20:28:53][ 861s] epoch 5/15 loss 0.0488 seg_src 0.0183 dom 0.0093 seg_tgt 0.0214 grl 0.89 val_dice 0.8294 +[20:31:44][ 1032s] epoch 6/15 loss 0.0351 seg_src 0.0140 dom 0.0051 seg_tgt 0.0159 grl 0.95 +[20:34:34][ 1202s] epoch 7/15 loss 0.0292 seg_src 0.0121 dom 0.0035 seg_tgt 0.0135 grl 0.97 +[20:37:25][ 1373s] epoch 8/15 loss 0.0293 seg_src 0.0118 dom 0.0035 seg_tgt 0.0139 grl 0.99 +[20:40:16][ 1544s] epoch 9/15 loss 0.0236 seg_src 0.0101 dom 0.0020 seg_tgt 0.0116 grl 0.99 +[20:43:25][ 1733s] epoch 10/15 loss 0.0227 seg_src 0.0099 dom 0.0018 seg_tgt 0.0110 grl 1.00 val_dice 0.8328 | TEST patch_dice 0.8898 image_dice 0.9379 +[20:46:14][ 1902s] epoch 11/15 loss 0.0215 seg_src 0.0095 dom 0.0015 seg_tgt 0.0105 grl 1.00 +[20:49:02][ 2070s] epoch 12/15 loss 0.0198 seg_src 0.0087 dom 0.0011 seg_tgt 0.0099 grl 1.00 +[20:51:50][ 2238s] epoch 13/15 loss 0.0227 seg_src 0.0096 dom 0.0022 seg_tgt 0.0110 grl 1.00 +[20:54:39][ 2407s] epoch 14/15 loss 0.0197 seg_src 0.0086 dom 0.0011 seg_tgt 0.0099 grl 1.00 +[20:57:46][ 2594s] epoch 15/15 loss 0.0178 seg_src 0.0081 dom 0.0007 seg_tgt 0.0090 grl 1.00 val_dice 0.8412 | TEST patch_dice 0.8879 image_dice 0.9486 +[20:57:46][ 2594s] DONE test patch_dice 0.8879 image_dice 0.9486 patch_vi 0.0435 | cyclegan 0.0 min, train 43.1 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mtda_e15_b100_s2/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mtda_e15_b100_s2/result.json new file mode 100644 index 0000000000000000000000000000000000000000..f53c7c76cbfa52a3a91613fc6ebe0457d3162c65 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mtda_e15_b100_s2/result.json @@ -0,0 +1,249 @@ +{ + "task": 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b/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mtda_e15_b10_s2/log.txt @@ -0,0 +1,17 @@ +[00:50:19][ 6s] START mtda target=lucchi-pp task=mitochondria budget=10% (805/8050 labeled) seed=2 epochs=15 x 400 steps | sources (1): multiclass | val 1750 test 1750 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[00:53:33][ 201s] epoch 1/15 loss 0.2304 seg_src 0.1103 dom 0.2196 seg_tgt 0.1157 grl 0.05 +[00:56:32][ 380s] epoch 2/15 loss 0.0953 seg_src 0.0385 dom 0.1304 seg_tgt 0.0417 grl 0.34 +[00:59:33][ 561s] epoch 3/15 loss 0.0939 seg_src 0.0265 dom 0.1110 seg_tgt 0.0278 grl 0.61 +[01:02:31][ 739s] epoch 4/15 loss 0.0775 seg_src 0.0265 dom 0.0326 seg_tgt 0.0271 grl 0.79 +[01:05:45][ 933s] epoch 5/15 loss 0.0441 seg_src 0.0170 dom 0.0099 seg_tgt 0.0173 grl 0.89 val_dice 0.7839 +[01:08:46][ 1114s] epoch 6/15 loss 0.0365 seg_src 0.0149 dom 0.0063 seg_tgt 0.0153 grl 0.95 +[01:11:47][ 1294s] epoch 7/15 loss 0.0259 seg_src 0.0112 dom 0.0036 seg_tgt 0.0111 grl 0.97 +[01:14:46][ 1474s] epoch 8/15 loss 0.0235 seg_src 0.0103 dom 0.0031 seg_tgt 0.0100 grl 0.99 +[01:17:47][ 1655s] epoch 9/15 loss 0.0235 seg_src 0.0102 dom 0.0031 seg_tgt 0.0103 grl 0.99 +[01:21:18][ 1865s] epoch 10/15 loss 0.0190 seg_src 0.0088 dom 0.0018 seg_tgt 0.0084 grl 1.00 val_dice 0.8252 | TEST patch_dice 0.8869 image_dice 0.9375 +[01:24:17][ 2044s] epoch 11/15 loss 0.0191 seg_src 0.0088 dom 0.0019 seg_tgt 0.0085 grl 1.00 +[01:27:17][ 2225s] epoch 12/15 loss 0.0165 seg_src 0.0078 dom 0.0015 seg_tgt 0.0072 grl 1.00 +[01:30:20][ 2407s] epoch 13/15 loss 0.0151 seg_src 0.0072 dom 0.0013 seg_tgt 0.0066 grl 1.00 +[01:33:20][ 2588s] epoch 14/15 loss 0.0167 seg_src 0.0078 dom 0.0016 seg_tgt 0.0073 grl 1.00 +[01:36:48][ 2796s] epoch 15/15 loss 0.0132 seg_src 0.0063 dom 0.0011 seg_tgt 0.0058 grl 1.00 val_dice 0.8269 | TEST patch_dice 0.9055 image_dice 0.9445 +[01:36:49][ 2797s] DONE test patch_dice 0.9055 image_dice 0.9445 patch_vi 0.0458 | cyclegan 0.0 min, train 46.4 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mtda_e15_b10_s2/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mtda_e15_b10_s2/result.json new file mode 100644 index 0000000000000000000000000000000000000000..26090f35b2283b58d04a8d67bb58974d19bf5445 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/lucchi-pp/mtda_e15_b10_s2/result.json @@ -0,0 +1,249 @@ +{ + "task": "mitochondria", + "target": "lucchi-pp", + "variant": "mtda", + "budget": 10.0, + "seed": 2, + "epochs": 15, + "steps_per_epoch": 400, + "labeled_patches": 805, + "train_pool": 8050, + "sources": [ + "multiclass" + ], + "args": { + "macs_repo": "/mnt/sdc1/connectomics/MACS-2", + "method": "mtda", + "source": "multiclass", + "task": "mitochondria", + "target": "lucchi-pp", + "budget": 10.0, + "seed": 2, + "epochs": 15, + "max_steps": 400, + "bs": 8, + "src_bs": 8, + "lr": 0.0001, + "gamma": 10.0, + "mu": 0.1, + "gan_iters": 1500, + "gan_bs": 4, + "ngf": 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test: evaluation only", + "gpu": "NVIDIA GeForce RTX 3070", + "torch": "2.5.1+cu118" +} \ No newline at end of file diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mldb_e15_b0_s2/log.txt b/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mldb_e15_b0_s2/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..39c2a67d7e155ed0477b2cd78f002da648c9548e --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mldb_e15_b0_s2/log.txt @@ -0,0 +1,17 @@ +[15:14:13][ 0s] START mldb target=multiclass task=mitochondria budget=0% (0/1855 labeled) seed=2 epochs=15 x 232 steps | sources (1): lucchi-pp | val 350 test 175 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[15:15:48][ 95s] epoch 1/15 loss 0.1508 seg_src 0.1396 dom 0.5250 seg_tgt 0.0000 grl 0.05 +[15:17:20][ 188s] epoch 2/15 loss 0.0903 seg_src 0.0535 dom 0.3369 seg_tgt 0.0000 grl 0.34 +[15:18:53][ 280s] epoch 3/15 loss 0.1445 seg_src 0.0566 dom 0.2417 seg_tgt 0.0000 grl 0.61 +[15:20:26][ 373s] epoch 4/15 loss 0.1732 seg_src 0.0433 dom 0.1694 seg_tgt 0.0000 grl 0.79 +[15:22:01][ 468s] epoch 5/15 loss 0.1792 seg_src 0.0350 dom 0.1457 seg_tgt 0.0000 grl 0.89 val_dice 0.7020 +[15:23:33][ 561s] epoch 6/15 loss 0.1686 seg_src 0.0298 dom 0.1388 seg_tgt 0.0000 grl 0.95 +[15:25:06][ 653s] epoch 7/15 loss 0.1579 seg_src 0.0268 dom 0.1311 seg_tgt 0.0000 grl 0.97 +[15:26:38][ 746s] epoch 8/15 loss 0.1380 seg_src 0.0231 dom 0.1149 seg_tgt 0.0000 grl 0.99 +[15:28:12][ 839s] epoch 9/15 loss 0.1311 seg_src 0.0217 dom 0.1095 seg_tgt 0.0000 grl 0.99 +[15:29:48][ 935s] epoch 10/15 loss 0.1200 seg_src 0.0194 dom 0.1005 seg_tgt 0.0000 grl 1.00 val_dice 0.8600 | TEST patch_dice 0.8604 image_dice 0.8795 +[15:31:20][ 1027s] epoch 11/15 loss 0.1170 seg_src 0.0202 dom 0.0968 seg_tgt 0.0000 grl 1.00 +[15:32:52][ 1119s] epoch 12/15 loss 0.1067 seg_src 0.0175 dom 0.0892 seg_tgt 0.0000 grl 1.00 +[15:34:24][ 1212s] epoch 13/15 loss 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+ random upfront budget of train labels; val: logged only (no selection, final model); test: evaluation only", + "gpu": "NVIDIA GeForce RTX 3070", + "torch": "2.5.1+cu118" +} \ No newline at end of file diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mldb_e15_b0_s3/log.txt b/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mldb_e15_b0_s3/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..e507ec89f5c116eadabbbf53821265ea9c7e6bb0 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mldb_e15_b0_s3/log.txt @@ -0,0 +1,17 @@ +[02:47:20][ 1s] START mldb target=multiclass task=mitochondria budget=0% (0/1855 labeled) seed=3 epochs=15 x 232 steps | sources (1): lucchi-pp | val 350 test 175 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[02:49:10][ 111s] epoch 1/15 loss 0.1876 seg_src 0.1764 dom 0.4830 seg_tgt 0.0000 grl 0.05 +[02:50:51][ 212s] epoch 2/15 loss 0.1252 seg_src 0.0817 dom 0.3935 seg_tgt 0.0000 grl 0.34 +[02:52:33][ 314s] epoch 3/15 loss 0.1571 seg_src 0.0577 dom 0.2713 seg_tgt 0.0000 grl 0.61 +[02:54:15][ 416s] epoch 4/15 loss 0.2271 seg_src 0.0582 dom 0.2208 seg_tgt 0.0000 grl 0.79 +[02:56:04][ 525s] epoch 5/15 loss 0.2204 seg_src 0.0443 dom 0.1780 seg_tgt 0.0000 grl 0.89 val_dice 0.5844 +[02:57:46][ 627s] epoch 6/15 loss 0.1920 seg_src 0.0381 dom 0.1539 seg_tgt 0.0000 grl 0.95 +[02:59:28][ 729s] epoch 7/15 loss 0.1727 seg_src 0.0300 dom 0.1427 seg_tgt 0.0000 grl 0.97 +[03:01:10][ 831s] epoch 8/15 loss 0.1564 seg_src 0.0260 dom 0.1304 seg_tgt 0.0000 grl 0.99 +[03:02:55][ 936s] epoch 9/15 loss 0.1431 seg_src 0.0238 dom 0.1193 seg_tgt 0.0000 grl 0.99 +[03:04:44][ 1045s] epoch 10/15 loss 0.1377 seg_src 0.0231 dom 0.1145 seg_tgt 0.0000 grl 1.00 val_dice 0.7037 | TEST patch_dice 0.8185 image_dice 0.8760 +[03:06:27][ 1148s] epoch 11/15 loss 0.1205 seg_src 0.0204 dom 0.1001 seg_tgt 0.0000 grl 1.00 +[03:08:09][ 1250s] epoch 12/15 loss 0.1220 seg_src 0.0203 dom 0.1017 seg_tgt 0.0000 grl 1.00 +[03:09:52][ 1353s] epoch 13/15 loss 0.1094 seg_src 0.0188 dom 0.0906 seg_tgt 0.0000 grl 1.00 +[03:11:36][ 1457s] epoch 14/15 loss 0.0996 seg_src 0.0165 dom 0.0831 seg_tgt 0.0000 grl 1.00 +[03:13:26][ 1567s] epoch 15/15 loss 0.0963 seg_src 0.0173 dom 0.0790 seg_tgt 0.0000 grl 1.00 val_dice 0.7958 | TEST patch_dice 0.8874 image_dice 0.9156 +[03:13:27][ 1568s] DONE test patch_dice 0.8874 image_dice 0.9156 patch_vi 0.0854 | cyclegan 0.0 min, train 26.0 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mldb_e15_b0_s3/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mldb_e15_b0_s3/result.json new file mode 100644 index 0000000000000000000000000000000000000000..a23a9a82edc2a0c0738fbd7b960e7ea887984bb3 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mldb_e15_b0_s3/result.json @@ -0,0 +1,249 @@ +{ + "task": "mitochondria", + "target": "multiclass", + 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loss 0.0167 seg_src 0.0144 dom 0.0023 seg_tgt 0.0000 grl 1.00 +[15:10:46][ 810s] epoch 12/15 loss 0.0156 seg_src 0.0135 dom 0.0021 seg_tgt 0.0000 grl 1.00 +[15:11:52][ 876s] epoch 13/15 loss 0.0144 seg_src 0.0128 dom 0.0016 seg_tgt 0.0000 grl 1.00 +[15:12:59][ 943s] epoch 14/15 loss 0.0139 seg_src 0.0122 dom 0.0016 seg_tgt 0.0000 grl 1.00 +[15:14:10][ 1014s] epoch 15/15 loss 0.0130 seg_src 0.0115 dom 0.0015 seg_tgt 0.0000 grl 1.00 val_dice 0.9635 | TEST patch_dice 0.8901 image_dice 0.9146 +[15:14:10][ 1014s] DONE test patch_dice 0.8901 image_dice 0.9146 patch_vi 0.0811 | cyclegan 0.0 min, train 16.9 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mtda_e15_b0_s2/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mtda_e15_b0_s2/result.json new file mode 100644 index 0000000000000000000000000000000000000000..a0725bcc844782497bb54e2dba70ab0aace2febd --- /dev/null +++ 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(0/1855 labeled) seed=3 epochs=15 x 232 steps | sources (1): lucchi-pp | val 350 test 175 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[03:15:00][ 82s] epoch 1/15 loss 0.1801 seg_src 0.1751 dom 0.1980 seg_tgt 0.0000 grl 0.05 +[03:16:13][ 155s] epoch 2/15 loss 0.0937 seg_src 0.0768 dom 0.1622 seg_tgt 0.0000 grl 0.34 +[03:17:26][ 229s] epoch 3/15 loss 0.0867 seg_src 0.0509 dom 0.0957 seg_tgt 0.0000 grl 0.61 +[03:18:39][ 302s] epoch 4/15 loss 0.0819 seg_src 0.0514 dom 0.0413 seg_tgt 0.0000 grl 0.79 +[03:19:58][ 381s] epoch 5/15 loss 0.0571 seg_src 0.0399 dom 0.0174 seg_tgt 0.0000 grl 0.89 val_dice 0.9228 +[03:21:11][ 453s] epoch 6/15 loss 0.0405 seg_src 0.0304 dom 0.0101 seg_tgt 0.0000 grl 0.95 +[03:22:24][ 527s] epoch 7/15 loss 0.0334 seg_src 0.0262 dom 0.0073 seg_tgt 0.0000 grl 0.97 +[03:23:38][ 600s] epoch 8/15 loss 0.0261 seg_src 0.0206 dom 0.0055 seg_tgt 0.0000 grl 0.99 +[03:24:53][ 676s] epoch 9/15 loss 0.0243 seg_src 0.0197 dom 0.0045 seg_tgt 0.0000 grl 0.99 +[03:26:15][ 757s] epoch 10/15 loss 0.0200 seg_src 0.0167 dom 0.0034 seg_tgt 0.0000 grl 1.00 val_dice 0.9568 | TEST patch_dice 0.8826 image_dice 0.8978 +[03:27:28][ 830s] epoch 11/15 loss 0.0174 seg_src 0.0148 dom 0.0027 seg_tgt 0.0000 grl 1.00 +[03:28:42][ 904s] epoch 12/15 loss 0.0164 seg_src 0.0141 dom 0.0023 seg_tgt 0.0000 grl 1.00 +[03:29:55][ 978s] epoch 13/15 loss 0.0169 seg_src 0.0145 dom 0.0024 seg_tgt 0.0000 grl 1.00 +[03:31:11][ 1054s] epoch 14/15 loss 0.0146 seg_src 0.0125 dom 0.0021 seg_tgt 0.0000 grl 1.00 +[03:32:32][ 1135s] epoch 15/15 loss 0.0139 seg_src 0.0122 dom 0.0016 seg_tgt 0.0000 grl 1.00 val_dice 0.8896 | TEST patch_dice 0.9221 image_dice 0.9530 +[03:32:33][ 1136s] DONE test patch_dice 0.9221 image_dice 0.9530 patch_vi 0.0736 | cyclegan 0.0 min, train 18.8 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mtda_e15_b0_s3/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mtda_e15_b0_s3/result.json new file mode 100644 index 0000000000000000000000000000000000000000..ab477d675b18eee7de1a91ea3778ba437487718a --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mtda_e15_b0_s3/result.json @@ -0,0 +1,249 @@ +{ + "task": "mitochondria", + "target": "multiclass", + "variant": "mtda", + "budget": 0.0, + "seed": 3, + "epochs": 15, + "steps_per_epoch": 232, + "labeled_patches": 0, + "train_pool": 1855, + "sources": [ + "lucchi-pp" + ], + "args": { + "macs_repo": "/mnt/sdc1/connectomics/MACS-2", + "method": "mtda", + "source": "lucchi-pp", + "task": "mitochondria", + "target": "multiclass", + "budget": 0.0, + "seed": 3, + "epochs": 15, + "max_steps": 400, + "bs": 8, + "src_bs": 8, + "lr": 0.0001, + "gamma": 10.0, + "mu": 0.1, + "gan_iters": 1500, + "gan_bs": 4, + "ngf": 32, + "sem_weight": 1.0, + "ema": 0.99, + "cons_weight": 1.0, + "mask_ratio": 0.5, + "kd_weight": 0.1, + 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0000000000000000000000000000000000000000..1c5cd02766f504a714903730f98d87b2cd647f45 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mtda_e15_b100_s2/log.txt @@ -0,0 +1,17 @@ +[14:33:34][ 0s] START mtda target=multiclass task=mitochondria budget=100% (1855/1855 labeled) seed=2 epochs=15 x 232 steps | sources (1): lucchi-pp | val 350 test 175 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[14:35:10][ 96s] epoch 1/15 loss 0.2997 seg_src 0.1522 dom 0.2290 seg_tgt 0.1424 grl 0.05 +[14:36:43][ 190s] epoch 2/15 loss 0.1388 seg_src 0.0653 dom 0.1308 seg_tgt 0.0589 grl 0.34 +[14:38:17][ 283s] epoch 3/15 loss 0.1309 seg_src 0.0457 dom 0.1236 seg_tgt 0.0382 grl 0.61 +[14:39:51][ 377s] epoch 4/15 loss 0.1434 seg_src 0.0418 dom 0.0885 seg_tgt 0.0365 grl 0.79 +[14:41:27][ 473s] epoch 5/15 loss 0.1159 seg_src 0.0412 dom 0.0376 seg_tgt 0.0375 grl 0.89 val_dice 0.9504 +[14:43:01][ 567s] epoch 6/15 loss 0.0793 seg_src 0.0305 dom 0.0218 seg_tgt 0.0270 grl 0.95 +[14:44:34][ 661s] epoch 7/15 loss 0.0539 seg_src 0.0229 dom 0.0109 seg_tgt 0.0201 grl 0.97 +[14:46:08][ 754s] epoch 8/15 loss 0.0427 seg_src 0.0193 dom 0.0069 seg_tgt 0.0165 grl 0.99 +[14:47:42][ 848s] epoch 9/15 loss 0.0372 seg_src 0.0167 dom 0.0057 seg_tgt 0.0148 grl 0.99 +[14:49:20][ 946s] epoch 10/15 loss 0.0337 seg_src 0.0155 dom 0.0047 seg_tgt 0.0135 grl 1.00 val_dice 0.9647 | TEST patch_dice 0.9168 image_dice 0.9302 +[14:50:54][ 1040s] epoch 11/15 loss 0.0284 seg_src 0.0132 dom 0.0031 seg_tgt 0.0120 grl 1.00 +[14:52:28][ 1134s] epoch 12/15 loss 0.0267 seg_src 0.0126 dom 0.0027 seg_tgt 0.0113 grl 1.00 +[14:54:02][ 1228s] epoch 13/15 loss 0.0262 seg_src 0.0126 dom 0.0025 seg_tgt 0.0110 grl 1.00 +[14:55:36][ 1322s] epoch 14/15 loss 0.0266 seg_src 0.0130 dom 0.0028 seg_tgt 0.0108 grl 1.00 +[14:57:13][ 1419s] epoch 15/15 loss 0.0234 seg_src 0.0115 dom 0.0019 seg_tgt 0.0101 grl 1.00 val_dice 0.9600 | TEST patch_dice 0.9044 image_dice 0.9168 +[14:57:13][ 1420s] DONE test patch_dice 0.9044 image_dice 0.9168 patch_vi 0.0771 | cyclegan 0.0 min, train 23.6 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mtda_e15_b100_s2/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mtda_e15_b100_s2/result.json new file mode 100644 index 0000000000000000000000000000000000000000..84e4db24f14eee1dcdff8ff801a3c047baa15af8 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mtda_e15_b100_s2/result.json @@ -0,0 +1,249 @@ +{ + "task": "mitochondria", + "target": "multiclass", + "variant": "mtda", + "budget": 100.0, + "seed": 2, + "epochs": 15, + "steps_per_epoch": 232, + "labeled_patches": 1855, + "train_pool": 1855, + "sources": [ + "lucchi-pp" + ], + "args": { + "macs_repo": "/mnt/sdc1/connectomics/MACS-2", + "method": "mtda", + "source": "lucchi-pp", + "task": "mitochondria", + "target": "multiclass", + "budget": 100.0, + "seed": 2, + "epochs": 15, + "max_steps": 400, + "bs": 8, + 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random upfront budget of train labels; val: logged only (no selection, final model); test: evaluation only", + "gpu": "NVIDIA GeForce RTX 3070", + "torch": "2.5.1+cu118" +} \ No newline at end of file diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mtda_e15_b100_s3/log.txt b/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mtda_e15_b100_s3/log.txt new file mode 100644 index 0000000000000000000000000000000000000000..c10fb87ee5f151eafebefae860fd069e087362dd --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mtda_e15_b100_s3/log.txt @@ -0,0 +1,17 @@ +[03:32:43][ 0s] START mtda target=multiclass task=mitochondria budget=100% (1855/1855 labeled) seed=3 epochs=15 x 232 steps | sources (1): lucchi-pp | val 350 test 175 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[03:34:34][ 111s] epoch 1/15 loss 0.4219 seg_src 0.2139 dom 0.2591 seg_tgt 0.2016 grl 0.05 +[03:36:17][ 214s] epoch 2/15 loss 0.2074 seg_src 0.0989 dom 0.1628 seg_tgt 0.0917 grl 0.34 +[03:38:00][ 317s] epoch 3/15 loss 0.1660 seg_src 0.0649 dom 0.1126 seg_tgt 0.0588 grl 0.61 +[03:39:43][ 420s] epoch 4/15 loss 0.1617 seg_src 0.0485 dom 0.0944 seg_tgt 0.0416 grl 0.79 +[03:41:31][ 528s] epoch 5/15 loss 0.1323 seg_src 0.0455 dom 0.0456 seg_tgt 0.0418 grl 0.89 val_dice 0.9234 +[03:43:15][ 632s] epoch 6/15 loss 0.0995 seg_src 0.0371 dom 0.0291 seg_tgt 0.0333 grl 0.95 +[03:44:58][ 735s] epoch 7/15 loss 0.0766 seg_src 0.0303 dom 0.0196 seg_tgt 0.0266 grl 0.97 +[03:46:41][ 838s] epoch 8/15 loss 0.0563 seg_src 0.0229 dom 0.0125 seg_tgt 0.0208 grl 0.99 +[03:48:26][ 943s] epoch 9/15 loss 0.0482 seg_src 0.0208 dom 0.0093 seg_tgt 0.0181 grl 0.99 +[03:50:17][ 1054s] epoch 10/15 loss 0.0414 seg_src 0.0183 dom 0.0072 seg_tgt 0.0159 grl 1.00 val_dice 0.9576 | TEST patch_dice 0.8789 image_dice 0.9022 +[03:52:00][ 1157s] epoch 11/15 loss 0.0363 seg_src 0.0162 dom 0.0057 seg_tgt 0.0144 grl 1.00 +[03:53:43][ 1260s] epoch 12/15 loss 0.0332 seg_src 0.0150 dom 0.0047 seg_tgt 0.0134 grl 1.00 +[03:55:27][ 1364s] epoch 13/15 loss 0.0305 seg_src 0.0140 dom 0.0039 seg_tgt 0.0126 grl 1.00 +[03:57:13][ 1470s] epoch 14/15 loss 0.0270 seg_src 0.0128 dom 0.0028 seg_tgt 0.0114 grl 1.00 +[03:59:03][ 1580s] epoch 15/15 loss 0.0269 seg_src 0.0127 dom 0.0031 seg_tgt 0.0112 grl 1.00 val_dice 0.9349 | TEST patch_dice 0.8932 image_dice 0.9213 +[03:59:04][ 1581s] DONE test patch_dice 0.8932 image_dice 0.9213 patch_vi 0.0755 | cyclegan 0.0 min, train 26.3 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mtda_e15_b100_s3/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mtda_e15_b100_s3/result.json new file mode 100644 index 0000000000000000000000000000000000000000..f5a982e539e2b048b604e78f7345e7c468f499c3 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mtda_e15_b100_s3/result.json @@ -0,0 +1,249 @@ +{ + "task": "mitochondria", + "target": 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mtda target=multiclass task=mitochondria budget=10% (185/1855 labeled) seed=2 epochs=15 x 232 steps | sources (1): lucchi-pp | val 350 test 175 | bs=8 src_bs=8 lr=0.0001 mu=0.1 gamma=10.0 amp=True gpu=NVIDIA GeForce RTX 3070 +[16:13:46][ 95s] epoch 1/15 loss 0.3022 seg_src 0.1547 dom 0.2279 seg_tgt 0.1424 grl 0.05 +[16:15:19][ 188s] epoch 2/15 loss 0.1417 seg_src 0.0684 dom 0.1282 seg_tgt 0.0590 grl 0.34 +[16:16:52][ 280s] epoch 3/15 loss 0.1299 seg_src 0.0467 dom 0.1216 seg_tgt 0.0370 grl 0.61 +[16:18:24][ 372s] epoch 4/15 loss 0.1412 seg_src 0.0448 dom 0.0807 seg_tgt 0.0371 grl 0.79 +[16:19:58][ 467s] epoch 5/15 loss 0.1126 seg_src 0.0423 dom 0.0350 seg_tgt 0.0357 grl 0.89 val_dice 0.9332 +[16:21:30][ 558s] epoch 6/15 loss 0.0841 seg_src 0.0345 dom 0.0210 seg_tgt 0.0285 grl 0.95 +[16:23:02][ 651s] epoch 7/15 loss 0.0530 seg_src 0.0235 dom 0.0108 seg_tgt 0.0186 grl 0.97 +[16:24:34][ 742s] epoch 8/15 loss 0.0430 seg_src 0.0199 dom 0.0079 seg_tgt 0.0152 grl 0.99 +[16:26:06][ 835s] epoch 9/15 loss 0.0372 seg_src 0.0177 dom 0.0058 seg_tgt 0.0137 grl 0.99 +[16:27:42][ 931s] epoch 10/15 loss 0.0308 seg_src 0.0151 dom 0.0043 seg_tgt 0.0114 grl 1.00 val_dice 0.9699 | TEST patch_dice 0.9150 image_dice 0.9275 +[16:29:14][ 1023s] epoch 11/15 loss 0.0268 seg_src 0.0134 dom 0.0034 seg_tgt 0.0100 grl 1.00 +[16:30:47][ 1116s] epoch 12/15 loss 0.0259 seg_src 0.0134 dom 0.0030 seg_tgt 0.0095 grl 1.00 +[16:32:21][ 1209s] epoch 13/15 loss 0.0257 seg_src 0.0135 dom 0.0029 seg_tgt 0.0094 grl 1.00 +[16:33:55][ 1303s] epoch 14/15 loss 0.0217 seg_src 0.0116 dom 0.0020 seg_tgt 0.0082 grl 1.00 +[16:35:32][ 1400s] epoch 15/15 loss 0.0228 seg_src 0.0120 dom 0.0024 seg_tgt 0.0083 grl 1.00 val_dice 0.9679 | TEST patch_dice 0.9048 image_dice 0.9170 +[16:35:32][ 1401s] DONE test patch_dice 0.9048 image_dice 0.9170 patch_vi 0.0770 | cyclegan 0.0 min, train 23.3 min diff --git a/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mtda_e15_b10_s2/result.json b/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mtda_e15_b10_s2/result.json new file mode 100644 index 0000000000000000000000000000000000000000..9f415138c1f577ff604d7415217e55924b2f6552 --- /dev/null +++ b/baselines/adapt/bayzid-system-2/runs/mitochondria/multiclass/mtda_e15_b10_s2/result.json @@ -0,0 +1,249 @@ +{ + "task": "mitochondria", + "target": "multiclass", + "variant": "mtda", + "budget": 10.0, + "seed": 2, + "epochs": 15, + "steps_per_epoch": 232, + "labeled_patches": 185, + "train_pool": 1855, + "sources": [ + "lucchi-pp" + ], + "args": { + "macs_repo": "/mnt/sdc1/connectomics/MACS-2", + "method": "mtda", + "source": "lucchi-pp", + "task": "mitochondria", + "target": "multiclass", + "budget": 10.0, + "seed": 2, + "epochs": 15, + "max_steps": 400, + "bs": 8, + "src_bs": 8, + "lr": 0.0001, + "gamma": 10.0, + "mu": 0.1, + "gan_iters": 1500, + "gan_bs": 4, + "ngf": 32, + "sem_weight": 1.0, + "ema": 0.99, + "cons_weight": 1.0, + "mask_ratio": 0.5, + "kd_weight": 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