import pandas as pd import numpy as np import pyarrow as pa import pyarrow.parquet as pq import h2o from h2o.automl import H2OAutoML from h2o.frame import H2OFrame import pickle import os import matplotlib.pyplot as plt # Define the target target = "MK14" # Replace with WEE1 or CXCR4 as needed # Start the H2O cluster h2o.init() # Load datasets data_train = pq.read_table("intermediate_data/data_train_joined.parquet").to_pandas() data_test = pq.read_table("intermediate_data/data_test_joined.parquet").to_pandas() # Filter data for the selected target data_train = data_train[data_train["Target Name"] == target] data_test = data_test[data_test["Target Name"] == target] # Define target column target_column = " RMSD_Energy" # Identify feature columns: all columns after "LF_score" (inclusive) start_idx = list(data_train.columns).index("LF_score") feature_columns = data_train.columns[start_idx:].tolist() feature_columns = [col for col in feature_columns if col != " RMSD_Energy"] # Convert to H2OFrame train_h2o = H2OFrame(data_train) test_h2o = H2OFrame(data_test) # train_h2o[target_column] = train_h2o[target_column].asnumeric() # test_h2o[target_column] = test_h2o[target_column].asnumeric() # train_h2o[target_column] = train_h2o[target_column].asfactor() # test_h2o[target_column] = test_h2o[target_column].asfactor() # Train AutoML model aml = H2OAutoML(max_models=1, seed=42) aml.train(x=feature_columns, y=target_column, training_frame=train_h2o) # Save the trained model top_model = aml.leader model_path = h2o.save_model(top_model, path = f"intermediate_data/top_model{target}", force=True) # Generate predictions for dataset_name, dataset_h2o, dataset_df in [ ("train", train_h2o, data_train), ("test", test_h2o, data_test), ]: predictions = aml.leader.predict(dataset_h2o).as_data_frame() dataset_df["predictions"] = predictions["predict"] # Save predictions output_path = f"intermediate_data/data_{dataset_name}_{target}_pred.parquet" pq.write_table(pa.Table.from_pandas(dataset_df), output_path) test_h2o_no_smiles = test_h2o.drop("SMILES") # Analysis top_model.explain(test_h2o_no_smiles) plt.savefig( f"product/model_summary_{target}_{parameters["date_code"]}.pdf", format = "pdf", bbox_inches = "tight") # Shutdown H2O cluster h2o.shutdown(prompt=False) print(f"Completed training and predictions for {target}")