import pandas as pd import numpy as np import pyarrow as pa import pyarrow.parquet as pq import h2o from h2o.automl import H2OAutoML from h2o.frame import H2OFrame import pickle import os # Define the target target = "WEE1" # Replace with WEE1 or CXCR4 as needed # Start the H2O cluster h2o.init() # Load datasets data_train = pq.read_table("intermediate_data/data_train_joined.parquet").to_pandas() data_test = pq.read_table("intermediate_data/data_test_joined.parquet").to_pandas() # Filter data for the selected target data_train = data_train[data_train["Target Name"] == target] data_test = data_test[data_test["Target Name"] == target] # Define target column target_column = " RMSD_Energy" # Identify feature columns: all columns after "LF_score" (inclusive) start_idx = list(data_train.columns).index("LF_score") feature_columns = data_train.columns[start_idx:].tolist() feature_columns = [col for col in feature_columns if col != " RMSD_Energy"] # Convert to H2OFrame train_h2o = H2OFrame(data_train) test_h2o = H2OFrame(data_test) # train_h2o[target_column] = train_h2o[target_column].asnumeric() # test_h2o[target_column] = test_h2o[target_column].asnumeric() # train_h2o[target_column] = train_h2o[target_column].asfactor() # test_h2o[target_column] = test_h2o[target_column].asfactor() # Train AutoML model aml = H2OAutoML(max_models=1, seed=42) aml.train(x=feature_columns, y=target_column, training_frame=train_h2o) # Save the trained model top_model = aml.leader model_path = h2o.save_model(top_model, path = f"intermediate_data/top_model{target}", force=True) # Generate predictions for dataset_name, dataset_h2o, dataset_df in [ ("train", train_h2o, data_train), ("test", test_h2o, data_test), ]: predictions = aml.leader.predict(dataset_h2o).as_data_frame() dataset_df["predictions"] = predictions["predict"] # Save predictions output_path = f"intermediate_data/data_{dataset_name}_{target}_pred.parquet" pq.write_table(pa.Table.from_pandas(dataset_df), output_path) # Shutdown H2O cluster h2o.shutdown(prompt=False) print(f"Completed training and predictions for {target}")