#!/usr/bin/env python3 """Fine-tune one span-extraction arm with in-training validation & best checkpoint saving. Tracks Gate 2 criteria every epoch: - over_deletion_rate < 1.0% - lowest harmful_span_rate Saves the best epoch checkpoint, preventing overfit degradation. Usage: venv/bin/python train_span.py --model --out [--val ] [--epochs 4] """ import argparse import json import math import os import random import sys import time import numpy as np import torch import torch.nn as nn from torch.utils.data import DataLoader, Dataset from transformers import AutoConfig, AutoModelForTokenClassification, AutoTokenizer, get_linear_schedule_with_warmup sys.path.insert(0, "/opt/vox/sandbox/scripts") from span_common import ( LABELS, MAX_LEN, decode_bio, encode_bio, load_jsonl, split_words, sweep_thresholds ) THRESHOLDS = [0.05, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 0.95, 0.97, 0.99, 0.995] def set_seed(s: int): random.seed(s) np.random.seed(s) torch.manual_seed(s) torch.cuda.manual_seed_all(s) class SpanDataset(Dataset): """Char spans -> word BIO -> first-subword label alignment.""" def __init__(self, rows, tokenizer, max_len=MAX_LEN): self.ex = [] self.truncated = 0 for r in rows: words, _, _ = split_words(r["raw_text"]) if not words: continue word_labels = encode_bio(r["raw_text"], [s["span"] for s in r.get("spans", [])]) enc = tokenizer(words, is_split_into_words=True, truncation=True, max_length=max_len) wids = enc.word_ids() if wids is None or all(w is None for w in wids): raise RuntimeError(f"word_ids unavailable for {r[id]}: {words[:5]}") labels, prev = [], None for w in wids: if w is None: labels.append(-100) elif w != prev: labels.append(word_labels[w] if w < len(word_labels) else -100) else: labels.append(-100) prev = w if len(wids) and wids[-1] is not None and len(enc["input_ids"]) >= max_len: self.truncated += 1 self.ex.append((enc["input_ids"], enc["attention_mask"], labels, r["id"])) def __len__(self): return len(self.ex) def __getitem__(self, i): return self.ex[i] def collate(batch, pad_id): n = max(len(b[0]) for b in batch) ids, mask, lab = [], [], [] for input_ids, attn, labels, _ in batch: k = n - len(input_ids) ids.append(input_ids + [pad_id] * k) mask.append(attn + [0] * k) lab.append(labels + [-100] * k) return ( torch.tensor(ids, dtype=torch.long), torch.tensor(mask, dtype=torch.long), torch.tensor(lab, dtype=torch.long), ) class LFMForTokenClassification(nn.Module): def __init__(self, model_name="LiquidAI/LFM2.5-Encoder-230M", num_labels=3): super().__init__() from transformers import AutoModelForMaskedLM self.config = AutoConfig.from_pretrained(model_name, trust_remote_code=True) mlm = AutoModelForMaskedLM.from_pretrained(model_name, trust_remote_code=True) self.lfm2 = mlm.lfm2 self.classifier = nn.Linear(self.config.hidden_size, num_labels) self.num_labels = num_labels def forward(self, input_ids, attention_mask=None, labels=None): out = self.lfm2(input_ids=input_ids, attention_mask=attention_mask) seq = out.last_hidden_state logits = self.classifier(seq) loss = None if labels is not None: loss = nn.functional.cross_entropy(logits.view(-1, self.num_labels), labels.view(-1), ignore_index=-100) return type("Output", (), {"loss": loss, "logits": logits})() @torch.no_grad() def evaluate_val(val_rows, tok, model, device, max_len=MAX_LEN, batch_size=32): model.eval() probs = [] order = sorted(range(len(val_rows)), key=lambda i: len(val_rows[i]["raw_text"])) out = [None] * len(val_rows) for b in range(0, len(order), batch_size): chunk = order[b:b + batch_size] encs, wids_all = [], [] for i in chunk: words, _, _ = split_words(val_rows[i]["raw_text"]) e = tok(words, is_split_into_words=True, truncation=True, max_length=max_len) encs.append(e) wids_all.append(e.word_ids()) pad = tok.pad(encs, return_tensors="pt") pad = {k: v.to(device) for k, v in pad.items()} logits = model(**pad).logits.float() p = torch.softmax(logits, dim=-1).cpu().numpy() for j, i in enumerate(chunk): wids = wids_all[j] if wids is None: out[i] = ([], []) continue p_inspan = np.zeros(len(wids)) p_begin = np.zeros(len(wids)) for t, w in enumerate(wids): if w is None or t >= p.shape[1]: continue pr = p[j][t] p_inspan[w] = max(0.0, 1.0 - pr[0]) tot = pr[1] + pr[2] p_begin[w] = (pr[1] / tot) if tot > 1e-9 else 0.5 out[i] = (p_inspan, p_begin) for t in THRESHOLDS: preds = [decode_bio(val_rows[i]["raw_text"], out[i][0], out[i][1], t) for i in range(len(val_rows))] probs.append((t, preds)) res = sweep_thresholds(val_rows, dict(probs), THRESHOLDS) return res def save_checkpoint(out_dir, model, tok, is_lfm=False): os.makedirs(out_dir, exist_ok=True) if is_lfm: model.lfm2.save_pretrained(out_dir) torch.save(model.classifier.state_dict(), os.path.join(out_dir, "classifier_head.pt")) tok.save_pretrained(out_dir) model.config.save_pretrained(out_dir) else: model.save_pretrained(out_dir) tok.save_pretrained(out_dir) def main(): ap = argparse.ArgumentParser() ap.add_argument("--model", required=True) ap.add_argument("--out", required=True) ap.add_argument("--train", default="/opt/vox/sandbox/corpus/pilot_v2_train.jsonl") ap.add_argument("--val", default="/opt/vox/sandbox/corpus/pilot_v2_val_adjudicated.jsonl") ap.add_argument("--seed", type=int, default=42) ap.add_argument("--epochs", type=int, default=4) ap.add_argument("--max-steps", type=int, default=None) ap.add_argument("--batch-size", type=int, default=16) ap.add_argument("--lr-encoder", type=float, default=3e-5) ap.add_argument("--lr-head", type=float, default=1e-3) ap.add_argument("--weight-decay", type=float, default=0.01) ap.add_argument("--warmup-ratio", type=float, default=0.1) ap.add_argument("--max-len", type=int, default=MAX_LEN) ap.add_argument("--threads", type=int, default=4) ap.add_argument("--device", default="cuda" if torch.cuda.is_available() else "cpu") ap.add_argument("--dtype", default="float32", choices=["float32", "bfloat16", "float16"]) args = ap.parse_args() set_seed(args.seed) os.makedirs(args.out, exist_ok=True) t0 = time.time() is_lfm = "LiquidAI" in args.model or "lfm" in args.model.lower() tok = AutoTokenizer.from_pretrained(args.model, trust_remote_code=is_lfm) dt = {"float32": torch.float32, "bfloat16": torch.bfloat16, "float16": torch.float16}[args.dtype] if is_lfm: model = LFMForTokenClassification(args.model, num_labels=len(LABELS)).to(args.device) else: model = AutoModelForTokenClassification.from_pretrained( args.model, num_labels=len(LABELS), id2label={i: l for i, l in enumerate(LABELS)}, label2id={l: i for i, l in enumerate(LABELS)}, dtype=dt, ).to(args.device) train_rows = load_jsonl(args.train) val_rows = load_jsonl(args.val) if args.val and os.path.exists(args.val) else None ds = SpanDataset(train_rows, tok, args.max_len) pad_id = tok.pad_token_id if tok.pad_token_id is not None else 0 dl = DataLoader( ds, batch_size=args.batch_size, shuffle=True, num_workers=args.threads, collate_fn=lambda b: collate(b, pad_id), drop_last=False, ) def is_head(n): return "classifier" in n or "score" in n groups = [ {"params": [p for n, p in model.named_parameters() if not is_head(n) and p.ndim > 1], "lr": args.lr_encoder, "weight_decay": args.weight_decay}, {"params": [p for n, p in model.named_parameters() if not is_head(n) and p.ndim <= 1], "lr": args.lr_encoder, "weight_decay": 0.0}, {"params": [p for n, p in model.named_parameters() if is_head(n)], "lr": args.lr_head, "weight_decay": 0.0}, ] opt = torch.optim.AdamW(groups) total_steps = len(dl) * args.epochs if args.max_steps is not None and args.max_steps < total_steps: total_steps = args.max_steps sched = get_linear_schedule_with_warmup(opt, int(total_steps * args.warmup_ratio), total_steps) log = [] step = 0 best_harmful = 999.0 best_epoch = -1 best_res = None print(f"Starting training: {args.model} | {len(ds)} train rows | {args.epochs} epochs | total_steps={total_steps}") for ep in range(args.epochs): model.train() tot, ntok = 0.0, 0 for ids, mask, lab in dl: ids, mask, lab = ids.to(args.device), mask.to(args.device), lab.to(args.device) out = model(input_ids=ids, attention_mask=mask, labels=lab) out.loss.backward() torch.nn.utils.clip_grad_norm_(model.parameters(), 1.0) opt.step() sched.step() opt.zero_grad(set_to_none=True) k = int((lab != -100).sum()) tot += float(out.loss.detach()) * k ntok += k step += 1 if args.max_steps is not None and step >= args.max_steps: break train_loss = round(tot / max(ntok, 1), 5) rec = { "epoch": ep + 1, "train_loss": train_loss, "lr": sched.get_last_lr()[0], "elapsed_s": round(time.time() - t0, 1), "step": step } # Validation evaluation at every epoch if val_rows: v_res = evaluate_val(val_rows, tok, model, args.device, args.max_len) best_at_ep = v_res["best"] rec["val_em"] = best_at_ep["exact_match"] rec["val_overdel"] = best_at_ep["over_deletion_rate"] rec["val_harmful"] = best_at_ep["harmful_span_rate"] rec["val_f1"] = best_at_ep.get("span_word", {}).get("f1", 0.0) rec["val_thr"] = best_at_ep["threshold"] # Gate 2 selection: over_del < 1.0% AND minimal harmful_span_rate is_better = False if best_at_ep["over_deletion_rate"] <= 1.0: if best_at_ep["harmful_span_rate"] < best_harmful: is_better = True elif best_at_ep["harmful_span_rate"] == best_harmful and best_at_ep["exact_match"] > (best_res["exact_match"] if best_res else 0): is_better = True if is_better: best_harmful = best_at_ep["harmful_span_rate"] best_epoch = ep + 1 best_res = best_at_ep save_checkpoint(args.out, model, tok, is_lfm=is_lfm) with open(os.path.join(args.out, "best_val_eval.json"), "w") as f: json.dump({"epoch": best_epoch, "eval": v_res}, f, indent=2) rec["is_best"] = True log.append(rec) print(json.dumps(rec), flush=True) if args.max_steps is not None and step >= args.max_steps: print("Reached max_steps; stopping training early.") break # If no validation set was provided, save the final model if not val_rows or best_epoch == -1: save_checkpoint(args.out, model, tok, is_lfm=is_lfm) meta = { "base_model": args.model, "labels": LABELS, "seed": args.seed, "epochs": args.epochs, "batch_size": args.batch_size, "lr_encoder": args.lr_encoder, "lr_head": args.lr_head, "weight_decay": args.weight_decay, "warmup_ratio": args.warmup_ratio, "max_len": args.max_len, "dtype": args.dtype, "train_file": args.train, "n_train": len(ds), "best_epoch": best_epoch, "best_eval": best_res, "train_log": log, "wall_s": round(time.time() - t0, 1), } with open(os.path.join(args.out, "train_meta.json"), "w") as f: json.dump(meta, f, indent=2) print("FINISHED", args.out, f"Best Epoch: {best_epoch} (Harmful: {best_harmful}%)", flush=True) if __name__ == "__main__": main()