amylonidis commited on
Commit
4dd4daa
·
verified ·
1 Parent(s): e588526

Update clefip2011.py

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Files changed (1) hide show
  1. clefip2011.py +11 -16
clefip2011.py CHANGED
@@ -15,19 +15,17 @@ class CLEFIP2011(datasets.GeneratorBasedBuilder):
15
  """Custom Dataset Loader"""
16
 
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  BUILDER_CONFIG_CLASS = CLEFIP2011Config
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-
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  BUILDER_CONFIGS = [
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  CLEFIP2011Config(
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  name="bibliographic",
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  version=datasets.Version("1.0.0"),
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  description="CLEF-IP 2011 Bibliographic Data",
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- data_url="https://huggingface.co/datasets/amylonidis/PatClass2011/resolve/main/clefip2011_bibliographic_clean.tar.gz",
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  dataset_type="bibliographic",
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  ),
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  ]
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  def _info(self):
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-
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  if self.config.dataset_type == "bibliographic":
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  features = datasets.Features(
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  {
@@ -65,13 +63,16 @@ class CLEFIP2011(datasets.GeneratorBasedBuilder):
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  )
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  def _split_generators(self, dl_manager):
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-
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  archive_path = dl_manager.download_and_extract(
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  "https://huggingface.co/datasets/amylonidis/PatClass2011/resolve/main/clefip2011_bibliographic_clean.tar.gz"
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  )
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  bibliographic_file = os.path.join(archive_path, "clefip2011_bibliographic.csv")
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  return [
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  datasets.SplitGenerator(
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  name=datasets.Split.TRAIN,
@@ -83,11 +84,8 @@ class CLEFIP2011(datasets.GeneratorBasedBuilder):
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  ]
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  def _generate_examples(self, filepaths, split):
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-
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  for filepath in filepaths:
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- df = pd.read_csv(filepath, header=None)
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-
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- column_names = [
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  "ucid",
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  "country",
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  "doc_number",
@@ -113,14 +111,10 @@ class CLEFIP2011(datasets.GeneratorBasedBuilder):
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  "claims_de_exist",
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  "claims_fr_exist",
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  "claims_en_exist",
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- ]
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- df.columns = column_names
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  df["date"] = pd.to_datetime(df["date"], format="%Y%m%d").astype(str)
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-
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- df["date_produced"] = pd.to_datetime(
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- df["date_produced"], format="%Y%m%d"
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- ).astype(str)
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  boolean_columns = [
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  "abstract_de_exist",
@@ -136,5 +130,6 @@ class CLEFIP2011(datasets.GeneratorBasedBuilder):
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  for col in boolean_columns:
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  df[col] = df[col].astype(bool)
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- for idx, row in df.iterrows():
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- yield idx, row.to_dict()
 
 
15
  """Custom Dataset Loader"""
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  BUILDER_CONFIG_CLASS = CLEFIP2011Config
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+
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  BUILDER_CONFIGS = [
20
  CLEFIP2011Config(
21
  name="bibliographic",
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  version=datasets.Version("1.0.0"),
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  description="CLEF-IP 2011 Bibliographic Data",
 
24
  dataset_type="bibliographic",
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  ),
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  ]
27
 
28
  def _info(self):
 
29
  if self.config.dataset_type == "bibliographic":
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  features = datasets.Features(
31
  {
 
63
  )
64
 
65
  def _split_generators(self, dl_manager):
 
66
  archive_path = dl_manager.download_and_extract(
67
  "https://huggingface.co/datasets/amylonidis/PatClass2011/resolve/main/clefip2011_bibliographic_clean.tar.gz"
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  )
69
 
70
  bibliographic_file = os.path.join(archive_path, "clefip2011_bibliographic.csv")
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+ # Check if the file exists
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+ if not os.path.isfile(bibliographic_file):
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+ raise FileNotFoundError(f"{bibliographic_file} not found in the extracted archive.")
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+
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  return [
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  datasets.SplitGenerator(
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  name=datasets.Split.TRAIN,
 
84
  ]
85
 
86
  def _generate_examples(self, filepaths, split):
 
87
  for filepath in filepaths:
88
+ df = pd.read_csv(filepath, names=[
 
 
89
  "ucid",
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  "country",
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  "doc_number",
 
111
  "claims_de_exist",
112
  "claims_fr_exist",
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  "claims_en_exist",
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+ ], header=None)
 
115
 
116
  df["date"] = pd.to_datetime(df["date"], format="%Y%m%d").astype(str)
117
+ df["date_produced"] = pd.to_datetime(df["date_produced"], format="%Y%m%d").astype(str)
 
 
 
118
 
119
  boolean_columns = [
120
  "abstract_de_exist",
 
130
  for col in boolean_columns:
131
  df[col] = df[col].astype(bool)
132
 
133
+ for idx, row in enumerate(df.to_dict(orient="records")):
134
+ yield idx, row
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+