amylonidis commited on
Commit
63486ef
·
verified ·
1 Parent(s): 152aaaa

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +30 -18
README.md CHANGED
@@ -79,7 +79,7 @@ import pandas as pd
79
  from datetime import datetime
80
  import gc
81
 
82
- def load_csvs_from_huggingface(start_date, end_date, columns_to_keep=None):
83
  """
84
  Load only the necessary CSV files from a Hugging Face dataset repository.
85
 
@@ -113,6 +113,8 @@ def load_csvs_from_huggingface(start_date, end_date, columns_to_keep=None):
113
  "patent_number": "Int64",
114
  }
115
 
 
 
116
  dataset_years = [str(year) for year in range(1978, 2006)]
117
 
118
  start_date_int = int(datetime.strptime(start_date, "%Y-%m-%d").strftime("%Y%m%d"))
@@ -126,20 +128,20 @@ def load_csvs_from_huggingface(start_date, end_date, columns_to_keep=None):
126
  raise ValueError(f"No matching CSV files found for {start_date} to {end_date}")
127
 
128
  df_list = []
129
-
130
  for year in matching_years:
131
  filepath = f"data/years/{year}/clefip2011_en_classification_{year}_validated.csv"
132
 
133
  try:
134
  # 1. Load the dataset (This stays on disk as an Arrow memory-map, NOT in RAM)
135
  dataset = load_dataset(
136
- huggingface_dataset_name,
137
- data_files=filepath,
138
  split="train",
139
  sep=";",
140
  on_bad_lines="skip"
141
  )
142
-
143
  # Select Columns Before Chunking
144
  if columns_to_keep is not None:
145
  # Safety check: Only select columns that actually exist in this specific file
@@ -149,14 +151,14 @@ def load_csvs_from_huggingface(start_date, end_date, columns_to_keep=None):
149
 
150
  # 2. Tell HuggingFace to output Pandas dataframes when sliced
151
  dataset = dataset.with_format("pandas")
152
-
153
- # 3. CHUNKING: Process exactly 10,000 rows at a time
154
  chunk_size = 10000
155
  for i in range(0, len(dataset), chunk_size):
156
- # Only these 10,000 rows are loaded into RAM
157
  df_chunk = dataset[i : i + chunk_size]
158
  df_chunk.columns = df_chunk.columns.str.strip()
159
-
160
  # Filter this specific chunk
161
  if "date" in df_chunk.columns:
162
  temp_dates = pd.to_numeric(df_chunk["date"], errors="coerce")
@@ -164,13 +166,22 @@ def load_csvs_from_huggingface(start_date, end_date, columns_to_keep=None):
164
  df_filtered = df_chunk[mask].copy()
165
  else:
166
  df_filtered = df_chunk.copy()
167
-
168
  # Apply types and append
169
  if not df_filtered.empty:
170
- valid_column_types = {col: dtype for col, dtype in column_types.items() if col in df_filtered.columns}
 
 
 
 
 
 
 
 
 
171
  df_filtered = df_filtered.astype(valid_column_types)
172
  df_list.append(df_filtered)
173
-
174
  # Clear chunk from memory immediately
175
  del df_chunk, df_filtered
176
  gc.collect()
@@ -182,17 +193,18 @@ def load_csvs_from_huggingface(start_date, end_date, columns_to_keep=None):
182
  except Exception as e:
183
  print(f"Error processing {filepath}: {e}")
184
 
185
-
186
  if not df_list:
187
  return pd.DataFrame()
188
-
189
  # Combine chunks
190
  final_df = pd.concat(df_list, ignore_index=True)
191
-
 
 
192
  # Destroy the list
193
  del df_list
194
  gc.collect()
195
-
196
  return final_df
197
 
198
 
@@ -205,7 +217,7 @@ Load All Columns
205
  start_date = "1985-03-01"
206
  end_date = "1985-04-30"
207
 
208
- df = load_csvs_from_huggingface(start_date, end_date)
209
 
210
 
211
  ```
@@ -223,7 +235,7 @@ columns_to_keep = [
223
  start_date = "1985-03-01"
224
  end_date = "1985-04-30"
225
 
226
- df = load_csvs_from_huggingface(start_date, end_date, columns_to_keep)
227
 
228
  ```
229
 
 
79
  from datetime import datetime
80
  import gc
81
 
82
+ def load_temporal_optimized(start_date, end_date, columns_to_keep=None):
83
  """
84
  Load only the necessary CSV files from a Hugging Face dataset repository.
85
 
 
113
  "patent_number": "Int64",
114
  }
115
 
116
+ category_cols = {"country", "kind", "lang", "status"}
117
+
118
  dataset_years = [str(year) for year in range(1978, 2006)]
119
 
120
  start_date_int = int(datetime.strptime(start_date, "%Y-%m-%d").strftime("%Y%m%d"))
 
128
  raise ValueError(f"No matching CSV files found for {start_date} to {end_date}")
129
 
130
  df_list = []
131
+
132
  for year in matching_years:
133
  filepath = f"data/years/{year}/clefip2011_en_classification_{year}_validated.csv"
134
 
135
  try:
136
  # 1. Load the dataset (This stays on disk as an Arrow memory-map, NOT in RAM)
137
  dataset = load_dataset(
138
+ huggingface_dataset_name,
139
+ data_files=filepath,
140
  split="train",
141
  sep=";",
142
  on_bad_lines="skip"
143
  )
144
+
145
  # Select Columns Before Chunking
146
  if columns_to_keep is not None:
147
  # Safety check: Only select columns that actually exist in this specific file
 
151
 
152
  # 2. Tell HuggingFace to output Pandas dataframes when sliced
153
  dataset = dataset.with_format("pandas")
154
+
155
+ # 3. CHUNKING: Process exactly 40,000 rows at a time
156
  chunk_size = 10000
157
  for i in range(0, len(dataset), chunk_size):
158
+ # Only these 40,000 rows are loaded into RAM
159
  df_chunk = dataset[i : i + chunk_size]
160
  df_chunk.columns = df_chunk.columns.str.strip()
161
+
162
  # Filter this specific chunk
163
  if "date" in df_chunk.columns:
164
  temp_dates = pd.to_numeric(df_chunk["date"], errors="coerce")
 
166
  df_filtered = df_chunk[mask].copy()
167
  else:
168
  df_filtered = df_chunk.copy()
169
+
170
  # Apply types and append
171
  if not df_filtered.empty:
172
+ # Step 1: Cast category columns via string[pyarrow] first to handle None/mixed types
173
+ for col in category_cols:
174
+ if col in df_filtered.columns:
175
+ df_filtered[col] = pd.Categorical(df_filtered[col])
176
+
177
+ # Step 2: Apply remaining column types, skipping category cols already handled
178
+ valid_column_types = {
179
+ col: dtype for col, dtype in column_types.items()
180
+ if col in df_filtered.columns and col not in category_cols
181
+ }
182
  df_filtered = df_filtered.astype(valid_column_types)
183
  df_list.append(df_filtered)
184
+
185
  # Clear chunk from memory immediately
186
  del df_chunk, df_filtered
187
  gc.collect()
 
193
  except Exception as e:
194
  print(f"Error processing {filepath}: {e}")
195
 
 
196
  if not df_list:
197
  return pd.DataFrame()
198
+
199
  # Combine chunks
200
  final_df = pd.concat(df_list, ignore_index=True)
201
+ for col in category_cols:
202
+ if col in final_df.columns:
203
+ final_df[col] = pd.Categorical(final_df[col])
204
  # Destroy the list
205
  del df_list
206
  gc.collect()
207
+
208
  return final_df
209
 
210
 
 
217
  start_date = "1985-03-01"
218
  end_date = "1985-04-30"
219
 
220
+ df = load_temporal_optimized(start_date, end_date)
221
 
222
 
223
  ```
 
235
  start_date = "1985-03-01"
236
  end_date = "1985-04-30"
237
 
238
+ df = load_temporal_optimized(start_date, end_date, columns_to_keep)
239
 
240
  ```
241