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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'unit', 'result', 'marker', 'value'}) and 16 missing columns ({'EGFR_result', 'TTF1_result', 'ROS1_result', 'label', 'BRAF_result', 'P63_result', 'P40_result', 'valid', 'CK7_result', 'NAPSINA_result', 'ALK_result', 'HER2_result', 'CK5_6_result', 'PDL1_TPS_unit', 'PDL1_TPS', 'KRAS_result'}).
This happened while the csv dataset builder was generating data using
hf://datasets/andreasenz/TRUTH-LUNG/histo_markers_long.csv (at revision aefd6cf7b1d833faf2e6f4266943a6f401d0f67b), ['hf://datasets/andreasenz/TRUTH-LUNG@aefd6cf7b1d833faf2e6f4266943a6f401d0f67b/histo_dataset_wide.csv', 'hf://datasets/andreasenz/TRUTH-LUNG@aefd6cf7b1d833faf2e6f4266943a6f401d0f67b/histo_markers_long.csv']
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1887, in _prepare_split_single
writer.write_table(table)
File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 675, in write_table
pa_table = table_cast(pa_table, self._schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
return cast_table_to_schema(table, schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
id: int64
marker: string
result: string
value: double
unit: string
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 805
to
{'id': Value('int64'), 'valid': Value('bool'), 'label': Value('string'), 'PDL1_TPS': Value('float64'), 'PDL1_TPS_unit': Value('string'), 'TTF1_result': Value('string'), 'CK7_result': Value('string'), 'CK5_6_result': Value('string'), 'P40_result': Value('string'), 'P63_result': Value('float64'), 'NAPSINA_result': Value('string'), 'ALK_result': Value('float64'), 'ROS1_result': Value('float64'), 'EGFR_result': Value('float64'), 'HER2_result': Value('string'), 'KRAS_result': Value('float64'), 'BRAF_result': Value('float64')}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1342, in compute_config_parquet_and_info_response
parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 907, in stream_convert_to_parquet
builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1736, in _prepare_split
for job_id, done, content in self._prepare_split_single(
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1889, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'unit', 'result', 'marker', 'value'}) and 16 missing columns ({'EGFR_result', 'TTF1_result', 'ROS1_result', 'label', 'BRAF_result', 'P63_result', 'P40_result', 'valid', 'CK7_result', 'NAPSINA_result', 'ALK_result', 'HER2_result', 'CK5_6_result', 'PDL1_TPS_unit', 'PDL1_TPS', 'KRAS_result'}).
This happened while the csv dataset builder was generating data using
hf://datasets/andreasenz/TRUTH-LUNG/histo_markers_long.csv (at revision aefd6cf7b1d833faf2e6f4266943a6f401d0f67b), ['hf://datasets/andreasenz/TRUTH-LUNG@aefd6cf7b1d833faf2e6f4266943a6f401d0f67b/histo_dataset_wide.csv', 'hf://datasets/andreasenz/TRUTH-LUNG@aefd6cf7b1d833faf2e6f4266943a6f401d0f67b/histo_markers_long.csv']
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
id
int64 | valid
bool | label
string | PDL1_TPS
float64 | PDL1_TPS_unit
string | TTF1_result
string | CK7_result
string | CK5_6_result
string | P40_result
string | P63_result
null | NAPSINA_result
null | ALK_result
null | ROS1_result
null | EGFR_result
null | HER2_result
null | KRAS_result
null | BRAF_result
null |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3,332,610
| true
|
adenocarcinoma
| 50
|
%
|
positive
|
positive
|
negative
|
negative
| null | null | null | null | null | null | null | null |
3,332,844
| true
|
benign_or_inflammatory
| null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,333,767
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,338,147
| true
|
benign_or_inflammatory
| null | null |
positive
|
positive
| null | null | null | null | null | null | null | null | null | null |
3,338,169
| true
|
squamous_carcinoma
| null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,338,301
| true
|
squamous_carcinoma
| null | null |
positive
|
positive
|
positive
|
positive
| null | null | null | null | null | null | null | null |
3,338,347
| true
|
adenocarcinoma
| 50
|
%
|
positive
|
positive
|
positive
|
negative
| null | null | null | null | null | null | null | null |
3,339,821
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,339,822
| true
|
adenocarcinoma
| 50
|
%
|
positive
|
positive
|
positive
|
negative
| null | null | null | null | null | null | null | null |
3,341,362
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,343,137
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,344,707
| true
| null | null | null |
negative
| null |
negative
|
negative
| null | null | null | null | null | null | null | null |
3,345,400
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,350,015
| false
|
benign_or_inflammatory
| null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,350,385
| true
|
benign_or_inflammatory
| null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,350,963
| true
|
squamous_carcinoma
| 1
|
%
|
negative
| null |
positive
|
positive
| null | null | null | null | null | null | null | null |
3,352,180
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,355,627
| false
|
benign_or_inflammatory
| null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,356,038
| true
|
adenocarcinoma
| 50
|
%
|
positive
|
positive
| null |
negative
| null | null | null | null | null | null | null | null |
3,357,554
| true
|
adenocarcinoma
| 50
|
%
| null | null | null | null | null | null | null | null | null | null | null | null |
3,357,968
| true
|
adenocarcinoma
| 1
|
%
|
positive
|
positive
| null | null | null | null | null | null | null | null | null | null |
3,359,577
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,359,678
| true
| null | null | null |
negative
|
positive
|
positive
|
negative
| null | null | null | null | null | null | null | null |
3,362,859
| true
|
squamous_carcinoma
| null | null |
negative
|
positive
|
positive
|
positive
| null | null | null | null | null | null | null | null |
3,363,068
| true
|
adenocarcinoma
| null | null |
positive
| null | null |
positive
| null | null | null | null | null | null | null | null |
3,365,532
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,366,544
| true
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,368,239
| true
|
carcinoid_tumor
| null | null |
positive
| null | null | null | null | null | null | null | null | null | null | null |
3,369,153
| true
| null | null | null | null |
negative
| null | null | null | null | null | null | null | null | null | null |
3,369,976
| true
|
adenocarcinoma
| null | null |
positive
|
positive
|
positive
| null | null | null | null | null | null | null | null | null |
3,372,968
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,373,760
| true
|
adenocarcinoma
| 50
|
%
|
positive
|
positive
| null | null | null | null | null | null | null | null | null | null |
3,373,767
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,374,265
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,377,595
| true
|
adenocarcinoma
| null | null |
negative
|
negative
| null | null | null | null | null | null | null | null | null | null |
3,381,105
| true
|
benign_or_inflammatory
| null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,381,215
| true
| null | null | null | null | null |
negative
|
negative
| null | null | null | null | null | null | null | null |
3,383,921
| true
|
squamous_carcinoma
| null | null |
negative
| null |
positive
|
positive
| null | null | null | null | null | null | null | null |
3,388,132
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,389,412
| true
| null | null | null |
negative
|
positive
| null |
negative
| null | null | null | null | null | null | null | null |
3,389,592
| true
|
squamous_carcinoma
| null | null |
negative
| null |
positive
|
positive
| null | null | null | null | null | null | null | null |
3,389,695
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,391,619
| true
| null | null | null |
positive
|
positive
| null | null | null | null | null | null | null | null | null | null |
3,392,211
| true
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,392,678
| true
|
adenocarcinoma
| null | null |
negative
|
negative
| null |
negative
| null | null | null | null | null | null | null | null |
3,392,883
| true
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,397,524
| true
|
squamous_carcinoma
| null | null | null |
positive
|
positive
| null | null | null | null | null | null | null | null | null |
3,403,398
| true
|
adenocarcinoma
| 1
|
%
|
positive
| null | null |
negative
| null | null | null | null | null | null | null | null |
3,409,330
| true
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,409,849
| true
| null | null | null |
negative
|
positive
|
positive
|
negative
| null | null | null | null | null | null | null | null |
3,414,061
| true
| null | null | null |
positive
|
positive
| null | null | null | null | null | null | null | null | null | null |
3,415,502
| true
|
squamous_carcinoma
| 50
|
%
|
negative
| null |
positive
|
positive
| null | null | null | null | null | null | null | null |
3,415,604
| true
|
adenocarcinoma
| null | null |
negative
|
positive
| null | null | null | null | null | null | null | null | null | null |
3,416,527
| true
|
adenocarcinoma
| 50
|
%
|
positive
|
positive
|
positive
|
negative
| null | null | null | null | null | null | null | null |
3,418,663
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,419,159
| false
|
benign_or_inflammatory
| null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,420,749
| true
|
benign_or_inflammatory
| null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,420,788
| true
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,422,563
| true
|
squamous_carcinoma
| null | null | null | null |
positive
|
positive
| null | null | null | null | null | null | null | null |
3,422,566
| true
| null | null | null |
positive
|
positive
|
negative
|
negative
| null | null | null | null | null | null | null | null |
3,424,127
| true
|
squamous_carcinoma
| 1
|
%
| null | null |
positive
|
positive
| null | null | null | null | null | null | null | null |
3,424,388
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,429,369
| true
| null | 1
|
%
|
negative
|
positive
|
positive
|
negative
| null | null | null | null | null | null | null | null |
3,430,472
| true
|
benign_or_inflammatory
| null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,435,399
| true
|
benign_or_inflammatory
| null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,437,447
| true
|
benign_or_inflammatory
| null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,438,237
| true
|
benign_or_inflammatory
| null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,438,744
| true
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,444,716
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,444,963
| true
|
adenocarcinoma
| null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,449,262
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,452,952
| true
|
squamous_carcinoma
| null | null | null | null |
positive
|
positive
| null | null | null | null | null | null | null | null |
3,453,421
| true
|
metastasis
| null | null |
negative
|
negative
|
positive
| null | null | null | null | null | null | null | null | null |
3,466,708
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,466,709
| true
|
adenocarcinoma
| null | null |
positive
|
positive
| null | null | null | null | null | null | null | null | null | null |
3,470,803
| true
|
adenocarcinoma
| null | null |
positive
|
positive
|
negative
|
negative
| null | null | null | null | null | null | null | null |
3,471,977
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,472,498
| true
|
benign_or_inflammatory
| null | null |
positive
|
positive
| null | null | null | null | null | null | null | null | null | null |
3,478,237
| true
| null | null | null | null |
positive
| null | null | null | null | null | null | null | null | null | null |
3,486,353
| true
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,487,972
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,493,513
| true
|
benign_or_inflammatory
| null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,497,948
| true
|
adenocarcinoma
| null | null |
positive
|
positive
| null |
positive
| null | null | null | null | null | null | null | null |
3,501,614
| true
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,503,763
| true
| null | null | null | null | null |
positive
| null | null | null | null | null | null | null | null | null |
3,504,703
| true
|
adenocarcinoma
| null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,505,040
| true
|
benign_or_inflammatory
| null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,510,901
| true
|
adenocarcinoma
| null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,518,420
| true
| null | null | null | null |
positive
| null | null | null | null | null | null | null | null | null | null |
3,518,426
| true
|
adenocarcinoma
| null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,519,511
| false
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,522,989
| true
|
adenocarcinoma
| null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,525,774
| true
|
adenocarcinoma
| null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,526,249
| true
|
squamous_carcinoma
| 50
|
%
| null | null | null | null | null | null | null | null | null | null | null | null |
3,528,207
| true
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,528,724
| true
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,531,808
| true
| null | 1
|
%
| null | null | null | null | null | null | null | null | null | null | null | null |
3,534,966
| true
|
adenocarcinoma
| 50
|
%
| null | null | null | null | null | null | null | null | null | null | null | null |
3,536,529
| true
| null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
3,540,199
| true
|
adenocarcinoma
| 50
|
%
|
positive
|
positive
|
positive
|
negative
| null | null | null | null | null | null | null | null |
End of preview.