Datasets:
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README.md
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license: mit
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---
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--------------------
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GENERAL INFORMATION
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- WSI_path_*.zip: the colon biopsies described in the metadata (1-10). For each ID, the active/inactive label Y is stored in the filename, with the format: "ID-X_Y.ndpi".
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- TIFF-annotations.zip: the corresponding annotations to the WSIs. The filenames of the annotations are in the same structure as the corresponding WSIs, with the format: "ID-X_Y.tiff".
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- patch-dataset-*.zip: the corresponding patch images and labels, split into train/validation/test sets, relevant for the evaluation of the design in the publication. Both for HE and CD3
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- qupath-project-annotations.zip: the qupath project file, also containing the annotations of all WSIs, but can be directly read in QuPath (after renaming of WSI paths).
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license: mit
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language:
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- en
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pretty_name: IBDColEpi
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# 140 HE and 111 CD3-stained colon biopsies of active and inactivate inflammatory bowel disease with epithelium annotated: the IBDColEpi dataset
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Due to the large size of the dataset, the actual data is hosted elsewhere.
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To access the data, please, refer to [this google drive](https://drive.google.com/drive/u/0/folders/1eUVs1DA1UYayUYjr8_aY3O5xDgV1uLvH)
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or [this dataverseNO](https://dataverse.no/dataset.xhtml?persistentId=doi:10.18710/TLA01U) link.
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--------------------
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GENERAL INFORMATION
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--------------------
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- WSI_path_*.zip: the colon biopsies described in the metadata (1-10). For each ID, the active/inactive label Y is stored in the filename, with the format: "ID-X_Y.ndpi".
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- TIFF-annotations.zip: the corresponding annotations to the WSIs. The filenames of the annotations are in the same structure as the corresponding WSIs, with the format: "ID-X_Y.tiff".
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- patch-dataset-*.zip: the corresponding patch images and labels, split into train/validation/test sets, relevant for the evaluation of the design in the publication. Both for HE and CD3
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- qupath-project-annotations.zip: the qupath project file, also containing the annotations of all WSIs, but can be directly read in QuPath (after renaming of WSI paths).
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