Datasets:

angelolab
/

ark_example

Tasks:

Image Segmentation

Sub-tasks:

instance-segmentation

Size:

Tags:

Multiplexed-Imaging

License:

Dataset card Files Files and versions

Sricharan Reddy Varra commited on Sep 22, 2022

Commit

9fd97a0

·

1 Parent(s): d59b409

small changes

Files changed (1) hide show

ark_example.py +10 -9

ark_example.py CHANGED Viewed

@@ -44,24 +44,25 @@ _LICENSE = "https://github.com/angelolab/ark-analysis/blob/main/LICENSE"
 # TODO: Add link to the official dataset URLs here
 # The HuggingFace Datasets library doesn't host the datasets but only points to the original files.
 # This can be an arbitrary nested dict/list of URLs (see below in `_split_generators` method)
-_URL_REPO = "https://huggingface.co/datasets/angelolab/ark_example/"
-_URLS = {
-    "input_data": f"{_URL_REPO}/data/input_data.zip",
-    "segmentation/cell_table": f"{_URL_REPO}/data/segmentation/cell_table.zip",
-    "segmentation/deepcell_output": f"{_URL_REPO}/data/segmentation/deepcell_output.zip",
 }
 _URL_DATASET_CONFIGS = {
-    "nb1": {"input_data": _URLS["input_data"]},
     "nb2": {
-        "input_data": _URLS["input_data"],
-        "segmentation/cell_table": _URLS["segmentation/cell_table"],
-        "segmentation/deepcell_output": _URLS["segmentation/deepcell_output"],
     },
 }
 """
 Dataset Fov renaming:

 # TODO: Add link to the official dataset URLs here
 # The HuggingFace Datasets library doesn't host the datasets but only points to the original files.
 # This can be an arbitrary nested dict/list of URLs (see below in `_split_generators` method)
+# _URL_REPO = "https://huggingface.co/datasets/angelolab/ark_example"
+_URL_DATA = {
+    "input_data": "data/input_data.zip",
+    "segmentation/cell_table": "data/segmentation/cell_table.zip",
+    "segmentation/deepcell_output": "data/segmentation/deepcell_output.zip",
 }
 _URL_DATASET_CONFIGS = {
+    "nb1": {"input_data": _URL_DATA["input_data"]},
     "nb2": {
+        "input_data": _URL_DATA["input_data"],
+        "segmentation/cell_table": _URL_DATA["segmentation/cell_table"],
+        "segmentation/deepcell_output": _URL_DATA["segmentation/deepcell_output"],
     },
 }
 """
 Dataset Fov renaming: