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Datasets:
anglixue
/
TenK10K_multiome

Languages:
English
Size:
n>1T
Tags:
single-cell
multiome
caQTL
eQTL
colocalization
SMR
License:
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anglixue commited on
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  1. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr1.parquet +3 -0
  2. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr10.parquet +3 -0
  3. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr11.parquet +3 -0
  4. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr12.parquet +3 -0
  5. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr13.parquet +3 -0
  6. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr14.parquet +3 -0
  7. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr15.parquet +3 -0
  8. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr16.parquet +3 -0
  9. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr17.parquet +3 -0
  10. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr18.parquet +3 -0
  11. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr19.parquet +3 -0
  12. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr2.parquet +3 -0
  13. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr20.parquet +3 -0
  14. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr21.parquet +3 -0
  15. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr22.parquet +3 -0
  16. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr3.parquet +3 -0
  17. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr4.parquet +3 -0
  18. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr5.parquet +3 -0
  19. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr6.parquet +3 -0
  20. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr7.parquet +3 -0
  21. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr8.parquet +3 -0
  22. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.cis_qtl_pairs.chr9.parquet +3 -0
  23. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.independent_cis_qtl_pairs.chr10.csv +5 -0
  24. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.independent_cis_qtl_pairs.chr13.csv +3 -0
  25. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.independent_cis_qtl_pairs.chr17.csv +2 -0
  26. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.independent_cis_qtl_pairs.chr18.csv +2 -0
  27. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.independent_cis_qtl_pairs.chr22.csv +4 -0
  28. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.independent_cis_qtl_pairs.chr5.csv +3 -0
  29. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.independent_cis_qtl_pairs.chr6.csv +2 -0
  30. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.independent_cis_qtl_pairs.chr8.csv +3 -0
  31. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr1.csv +0 -0
  32. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr10.csv +0 -0
  33. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr11.csv +0 -0
  34. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr12.csv +0 -0
  35. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr13.csv +0 -0
  36. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr14.csv +0 -0
  37. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr15.csv +0 -0
  38. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr16.csv +0 -0
  39. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr17.csv +0 -0
  40. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr18.csv +0 -0
  41. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr19.csv +0 -0
  42. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr2.csv +0 -0
  43. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr20.csv +0 -0
  44. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr21.csv +0 -0
  45. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr22.csv +0 -0
  46. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr3.csv +0 -0
  47. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr4.csv +0 -0
  48. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr5.csv +0 -0
  49. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr6.csv +0 -0
  50. caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr7.csv +0 -0
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caQTL_common_TensorQTL/Replication/B_naive/TenK10K.independent_cis_qtl_pairs.chr10.csv ADDED
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+ phenotype_id num_var beta_shape1 beta_shape2 true_df pval_true_df variant_id start_distance end_distance ma_samples ma_count af pval_nominal slope slope_se pval_perm pval_beta rank
2
+ 0 chr10:22054927-22055230 8 0.8662276 1.4672924 76.785095 8.58289428056185e-08 10:22047190:T:A -7889 -7889 18 20 0.16949153 8.904431850502823e-06 1.0227757 0.20803061 0.0006999300069993001 1.0702521928965644e-06 1
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+ 1 chr10:46264432-46264652 2 1.0 1.6215562 436.5734 1.2973078144283222e-07 10:46258692:C:A -5851 -5851 14 25 0.21186441 0.0669740322096233 -1.1102293 0.5936216 0.05119488051194881 2.103657162085522e-07 1
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+ 2 chr10:46291262-46291463 4 1.0 1.3433372 329.0902 0.0 10:46284758:C:G -6605 -6605 12 23 0.19491525 0.0 -7.6811457 0.0 0.032596740325967405 0.0 2
5
+ 3 chr10:47226323-47226542 7 1.0 3.0540545 129.15747 2.1047278114555217e-06 10:47217339:C:T -9094 -9094 13 24 0.20338982 0.002445097271167988 2.1946697 0.6896678 0.0675932406759324 6.427938523627759e-06 1
caQTL_common_TensorQTL/Replication/B_naive/TenK10K.independent_cis_qtl_pairs.chr13.csv ADDED
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+ phenotype_id num_var beta_shape1 beta_shape2 true_df pval_true_df variant_id start_distance end_distance ma_samples ma_count af pval_nominal slope slope_se pval_perm pval_beta rank
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+ 0 chr13:27026051-27027116 32 0.9423599 6.1601963 50.08397 2.3266282193188332e-07 13:27019165:T:C -7419 -7419 17 19 0.16101696 1.0322688766196053e-07 1.1892816 0.1932825 9.999000099990002e-05 3.17245451724803e-06 1
3
+ 1 chr13:49620067-49620689 41 0.85814494 5.11702 55.567383 1.7501939133012474e-07 13:49620258:G:A -121 -121 29 37 0.31355932 3.380288127836839e-07 0.3291847 0.056471188 9.999000099990002e-05 6.73173108347303e-06 1
caQTL_common_TensorQTL/Replication/B_naive/TenK10K.independent_cis_qtl_pairs.chr17.csv ADDED
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+ phenotype_id num_var beta_shape1 beta_shape2 true_df pval_true_df variant_id start_distance end_distance ma_samples ma_count af pval_nominal slope slope_se pval_perm pval_beta rank
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+ 0 chr17:20677440-20678186 3 1.0247024 1.486208 56.57095 1.6174120862791808e-07 17:20672384:T:C -5430 -5430 34 42 0.3559322 3.995265523338994e-07 -0.46495867 0.0803954 9.999000099990002e-05 1.644587067444138e-07 1
caQTL_common_TensorQTL/Replication/B_naive/TenK10K.independent_cis_qtl_pairs.chr18.csv ADDED
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+ phenotype_id num_var beta_shape1 beta_shape2 true_df pval_true_df variant_id start_distance end_distance ma_samples ma_count af pval_nominal slope slope_se pval_perm pval_beta rank
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+ 0 chr18:74264016-74264888 25 0.8656357 3.7238371 68.23379 3.358761646704845e-08 18:74254601:G:A -9852 -9852 32 39 0.33050847 1.1653253402106216e-06 0.49381787 0.08997981 9.999000099990002e-05 1.096931406928437e-06 1
caQTL_common_TensorQTL/Replication/B_naive/TenK10K.independent_cis_qtl_pairs.chr22.csv ADDED
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+ phenotype_id num_var beta_shape1 beta_shape2 true_df pval_true_df variant_id start_distance end_distance ma_samples ma_count af pval_nominal slope slope_se pval_perm pval_beta rank
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+ 0 chr22:22790918-22791163 10 0.9452117 3.6556547 59.03632 8.257438691944886e-07 22:22787003:A:G -4038 -4038 31 36 0.30508474 3.0382350671184353e-06 0.5035861 0.09645815 9.999000099990002e-05 6.150860848661895e-06 1
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+ 1 chr22:33221639-33222324 20 0.9483065 4.036504 52.62606 3.90014553970948e-07 22:33221815:T:C -167 -167 24 28 0.23728813 3.54444931667929e-07 0.9571159 0.16455898 9.999000099990002e-05 3.1888430954787862e-06 1
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+ 2 chr22:39388115-39389627 31 0.94992465 2.1506739 56.31068 1.8524895828296284e-07 22:39379042:C:A -9830 -9830 25 32 0.27118644 4.2671908825039736e-07 -0.33086616 0.057389043 9.999000099990002e-05 8.417206126385391e-07 1
caQTL_common_TensorQTL/Replication/B_naive/TenK10K.independent_cis_qtl_pairs.chr5.csv ADDED
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+ phenotype_id num_var beta_shape1 beta_shape2 true_df pval_true_df variant_id start_distance end_distance ma_samples ma_count af pval_nominal slope slope_se pval_perm pval_beta rank
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+ 0 chr5:74938309-74938897 6 0.954358 5.293752 60.66419 3.189701658096e-08 5:74934759:C:A -3845 -3845 19 21 0.1779661 2.384102416290107e-07 0.74161804 0.12517112 9.999000099990002e-05 3.4911956967441496e-07 1
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+ 1 chr5:176825768-176826329 1 0.42825937 21.433025 438.91196 2.859884450737185e-17 5:176829715:C:T 3666 3666 25 27 0.22881356 0.0034435067558524356 0.6762075 0.22079422 9.999000099990002e-05 3.4285939407064854e-07 1
caQTL_common_TensorQTL/Replication/B_naive/TenK10K.independent_cis_qtl_pairs.chr6.csv ADDED
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+ 0 chr6:524802-525552 14 0.80711615 4.5933466 70.50302 8.034146841728069e-09 6:529912:A:C 4734 4734 18 22 0.18644068 5.877910633729619e-07 0.7565817 0.1332658 9.999000099990002e-05 1.0557378419523796e-06 1
caQTL_common_TensorQTL/Replication/B_naive/TenK10K.independent_cis_qtl_pairs.chr8.csv ADDED
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+ 0 chr8:8227803-8229338 34 0.963259 3.6977768 59.725883 4.82231451239709e-07 8:8237150:T:C 8579 8579 30 40 0.33898306 2.14819453027736e-06 0.6299198 0.11845389 9.999000099990002e-05 2.9307392629707735e-06 1
3
+ 1 chr8:115625183-115625674 25 0.9838157 2.9456627 52.656494 9.672372337778211e-07 8:115621472:C:T -3957 -3957 24 26 0.22033899 8.910676527339482e-07 0.63663566 0.11445314 9.999000099990002e-05 3.5179268446394004e-06 1
caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr1.csv ADDED
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caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr10.csv ADDED
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caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr11.csv ADDED
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caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr12.csv ADDED
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caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr13.csv ADDED
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caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr14.csv ADDED
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caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr15.csv ADDED
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caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr16.csv ADDED
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caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr17.csv ADDED
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caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr18.csv ADDED
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caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr19.csv ADDED
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caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr2.csv ADDED
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caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr20.csv ADDED
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caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr21.csv ADDED
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caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr22.csv ADDED
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caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr3.csv ADDED
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caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr4.csv ADDED
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caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr5.csv ADDED
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caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr6.csv ADDED
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caQTL_common_TensorQTL/Replication/B_naive/TenK10K.sig_cis_qtl_pairs.chr7.csv ADDED
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