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Datasets:
anglixue
/
TenK10K_multiome

Languages:
English
Size:
n>1T
Tags:
single-cell
multiome
caQTL
eQTL
colocalization
SMR
License:
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  1. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr1.parquet +3 -0
  2. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr10.parquet +3 -0
  3. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr11.parquet +3 -0
  4. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr12.parquet +3 -0
  5. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr13.parquet +3 -0
  6. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr14.parquet +3 -0
  7. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr15.parquet +3 -0
  8. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr16.parquet +3 -0
  9. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr17.parquet +3 -0
  10. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr18.parquet +3 -0
  11. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr19.parquet +3 -0
  12. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr2.parquet +3 -0
  13. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr20.parquet +3 -0
  14. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr21.parquet +3 -0
  15. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr22.parquet +3 -0
  16. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr3.parquet +3 -0
  17. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr4.parquet +3 -0
  18. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr5.parquet +3 -0
  19. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr6.parquet +3 -0
  20. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr7.parquet +3 -0
  21. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr8.parquet +3 -0
  22. caQTL_common_TensorQTL/Replication/pDC/TenK10K.cis_qtl_pairs.chr9.parquet +3 -0
  23. caQTL_common_TensorQTL/Replication/pDC/TenK10K.independent_cis_qtl_pairs.chr10.csv +2 -0
  24. caQTL_common_TensorQTL/Replication/pDC/TenK10K.independent_cis_qtl_pairs.chr15.csv +4 -0
  25. caQTL_common_TensorQTL/Replication/pDC/TenK10K.independent_cis_qtl_pairs.chr19.csv +2 -0
  26. caQTL_common_TensorQTL/Replication/pDC/TenK10K.independent_cis_qtl_pairs.chr20.csv +3 -0
  27. caQTL_common_TensorQTL/Replication/pDC/TenK10K.independent_cis_qtl_pairs.chr21.csv +2 -0
  28. caQTL_common_TensorQTL/Replication/pDC/TenK10K.independent_cis_qtl_pairs.chr22.csv +2 -0
  29. caQTL_common_TensorQTL/Replication/pDC/TenK10K.independent_cis_qtl_pairs.chr5.csv +3 -0
  30. caQTL_common_TensorQTL/Replication/pDC/TenK10K.independent_cis_qtl_pairs.chr6.csv +2 -0
  31. caQTL_common_TensorQTL/Replication/pDC/TenK10K.independent_cis_qtl_pairs.chr7.csv +5 -0
  32. caQTL_common_TensorQTL/Replication/pDC/TenK10K.independent_cis_qtl_pairs.chr9.csv +2 -0
  33. caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr1.csv +0 -0
  34. caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr10.csv +0 -0
  35. caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr11.csv +0 -0
  36. caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr12.csv +0 -0
  37. caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr13.csv +0 -0
  38. caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr14.csv +0 -0
  39. caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr15.csv +0 -0
  40. caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr16.csv +0 -0
  41. caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr17.csv +0 -0
  42. caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr18.csv +0 -0
  43. caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr19.csv +0 -0
  44. caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr2.csv +0 -0
  45. caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr20.csv +0 -0
  46. caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr21.csv +0 -0
  47. caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr22.csv +0 -0
  48. caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr3.csv +0 -0
  49. caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr4.csv +0 -0
  50. caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr5.csv +0 -0
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caQTL_common_TensorQTL/Replication/pDC/TenK10K.independent_cis_qtl_pairs.chr10.csv ADDED
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+ phenotype_id num_var beta_shape1 beta_shape2 true_df pval_true_df variant_id start_distance end_distance ma_samples ma_count af pval_nominal slope slope_se pval_perm pval_beta rank
2
+ 0 chr10:4514131-4515195 19 0.5206379 2.9228692 12.523954 0.0 10:4517464:G:A 2800 2800 7 7 0.20588236 0.0 -3.0110908 0.0 9.999000099990002e-05 0.0 1
caQTL_common_TensorQTL/Replication/pDC/TenK10K.independent_cis_qtl_pairs.chr15.csv ADDED
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+ phenotype_id num_var beta_shape1 beta_shape2 true_df pval_true_df variant_id start_distance end_distance ma_samples ma_count af pval_nominal slope slope_se pval_perm pval_beta rank
2
+ 0 chr15:88904371-88905273 45 0.8468595 6.121754 8.1878 4.670347177278242e-07 15:88902553:G:A -2270 -2270 2 3 0.0882353 4.239400943164293e-09 1.7660936 0.107220486 0.0072992700729927005 2.1155034196376447e-05 1
3
+ 1 chr15:101675775-101676714 27 1.0 2.972316 7.5114484 0.0 15:101672374:T:A -3871 -3871 1 2 0.05882353 0.0 2.0615525 0.0 0.05469453054694531 0.0 1
4
+ 2 chr15:101676764-101676981 25 1.0000001 3.013608 8.34032 0.0 15:101672374:T:A -4499 -4499 1 2 0.05882353 0.0 2.0615525 0.0 0.05469453054694531 0.0 1
caQTL_common_TensorQTL/Replication/pDC/TenK10K.independent_cis_qtl_pairs.chr19.csv ADDED
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+ phenotype_id num_var beta_shape1 beta_shape2 true_df pval_true_df variant_id start_distance end_distance ma_samples ma_count af pval_nominal slope slope_se pval_perm pval_beta rank
2
+ 0 chr19:530848-533693 58 0.19565865 2.2063391 7.536493 3.1129742786041385e-26 19:525413:G:A -6858 -6858 6 6 0.1764706 8.846213610867253e-38 4.1231046 0.0006070132 9.999000099990002e-05 1.2503656884935984e-05 1
caQTL_common_TensorQTL/Replication/pDC/TenK10K.independent_cis_qtl_pairs.chr20.csv ADDED
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+ phenotype_id num_var beta_shape1 beta_shape2 true_df pval_true_df variant_id start_distance end_distance ma_samples ma_count af pval_nominal slope slope_se pval_perm pval_beta rank
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+ 0 chr20:19014611-19014833 31 1.0 8.065532 7.9379935 9.085312574825837e-29 20:19016205:C:T 1482 1482 3 3 0.0882353 1.954755411434013e-39 -4.123106 0.00042922323 0.0580941905809419 7.327760490145519e-28 1
3
+ 1 chr20:57411597-57413010 21 1.0 6.0678377 7.799824 0.0 20:57413302:C:T 998 998 5 5 0.14705883 0.0 4.123106 0.0 0.05699430056994301 0.0 1
caQTL_common_TensorQTL/Replication/pDC/TenK10K.independent_cis_qtl_pairs.chr21.csv ADDED
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+ 0 chr21:41666514-41667225 57 0.99999994 5.2891564 7.6107035 0.0 21:41668583:T:C 1713 1713 3 3 0.0882353 0.0 -4.1231055 0.0 0.0580941905809419 0.0 1
caQTL_common_TensorQTL/Replication/pDC/TenK10K.independent_cis_qtl_pairs.chr22.csv ADDED
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+ phenotype_id num_var beta_shape1 beta_shape2 true_df pval_true_df variant_id start_distance end_distance ma_samples ma_count af pval_nominal slope slope_se pval_perm pval_beta rank
2
+ 0 chr22:29244990-29246247 43 0.7873426 5.0726805 11.820614 9.557089151430392e-08 22:29254703:A:G 9084 9084 15 16 0.47058824 2.746923747409379e-07 -2.4855556 0.2252974 0.007999200079992 1.1317791829393534e-05 1
caQTL_common_TensorQTL/Replication/pDC/TenK10K.independent_cis_qtl_pairs.chr5.csv ADDED
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+ phenotype_id num_var beta_shape1 beta_shape2 true_df pval_true_df variant_id start_distance end_distance ma_samples ma_count af pval_nominal slope slope_se pval_perm pval_beta rank
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+ 0 chr5:41896050-41897233 11 0.23381625 7.009142 37.83898 3.2199671718691647e-21 5:41887907:T:A -8735 -8735 5 9 0.2647059 4.838737403696626e-07 -1.7710611 0.1697775 0.056694330566943306 2.7652085580385655e-05 1
3
+ 1 chr5:137900392-137901810 12 0.14471284 0.5383549 9.634616 3.128826148298231e-33 5:137909606:G:A 8504 8504 1 2 0.05882353 8.846213610867253e-38 2.0615528 0.00030350665 0.06229377062293771 1.700224630245831e-05 1
caQTL_common_TensorQTL/Replication/pDC/TenK10K.independent_cis_qtl_pairs.chr6.csv ADDED
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2
+ 0 chr6:119181099-119181944 49 0.99999994 9.339715 12.529688 0.0 6:119179043:C:A -2479 -2479 1 2 0.05882353 0.0 2.0615528 0.0 0.056694330566943306 0.0 1
caQTL_common_TensorQTL/Replication/pDC/TenK10K.independent_cis_qtl_pairs.chr7.csv ADDED
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+ phenotype_id num_var beta_shape1 beta_shape2 true_df pval_true_df variant_id start_distance end_distance ma_samples ma_count af pval_nominal slope slope_se pval_perm pval_beta rank
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+ 0 chr7:115195-115942 104 1.0000001 13.85246 8.825918 0.0 7:112828:A:C -2741 -2741 3 3 0.0882353 0.0 -4.123105 0.0 0.06569343065693431 0.0 1
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+ 1 chr7:44986069-44987092 16 1.0009996 2.6428156 9.90415 9.308617999388703e-06 7:44980215:T:G -6366 -6366 4 5 0.14705883 2.8537514780862547e-06 1.6348388 0.18748884 0.0016998300169983002 2.4335205107467502e-05 1
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+ 2 chr7:90403051-90404503 10 0.8842205 2.4263842 11.804177 2.9598355138400957e-06 7:90395683:G:C -8095 -8095 2 2 0.05882353 6.613346246478631e-06 2.781244 0.3481072 0.000999900009999 2.900290103976098e-05 1
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+ 3 chr7:130069966-130071059 8 0.84691983 4.076322 12.160457 3.0749396811055956e-07 7:130067927:G:C -2586 -2586 3 3 0.0882353 1.1744727000425096e-06 2.0715954 0.21702492 0.0006999300069993001 1.0461177958121008e-05 1
caQTL_common_TensorQTL/Replication/pDC/TenK10K.independent_cis_qtl_pairs.chr9.csv ADDED
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+ phenotype_id num_var beta_shape1 beta_shape2 true_df pval_true_df variant_id start_distance end_distance ma_samples ma_count af pval_nominal slope slope_se pval_perm pval_beta rank
2
+ 0 chr9:81289451-81290130 35 0.13675225 1.1882439 10.92326 3.615820792442659e-39 9:81280938:C:T -8853 -8853 6 7 0.20588236 1.954755411434013e-39 2.0615525 0.00021461157 9.999000099990002e-05 5.7267340307876455e-06 1
caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr1.csv ADDED
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caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr10.csv ADDED
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caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr11.csv ADDED
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caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr12.csv ADDED
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caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr13.csv ADDED
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caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr14.csv ADDED
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caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr15.csv ADDED
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caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr16.csv ADDED
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caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr17.csv ADDED
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caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr18.csv ADDED
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caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr19.csv ADDED
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caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr2.csv ADDED
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caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr20.csv ADDED
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caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr21.csv ADDED
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caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr22.csv ADDED
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caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr3.csv ADDED
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caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr4.csv ADDED
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caQTL_common_TensorQTL/Replication/pDC/TenK10K.sig_cis_qtl_pairs.chr5.csv ADDED
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